Multiple sequence alignment - TraesCS3D01G194300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G194300 chr3D 100.000 4193 0 0 1 4193 185331463 185335655 0.000000e+00 7744.0
1 TraesCS3D01G194300 chr3D 96.835 158 4 1 1926 2082 397162553 397162710 3.210000e-66 263.0
2 TraesCS3D01G194300 chr3D 95.679 162 6 1 1926 2086 520636830 520636991 4.160000e-65 259.0
3 TraesCS3D01G194300 chr3D 93.902 164 9 1 1917 2079 528190520 528190683 3.240000e-61 246.0
4 TraesCS3D01G194300 chr3A 93.769 1926 67 26 21 1923 244481432 244483327 0.000000e+00 2843.0
5 TraesCS3D01G194300 chr3A 91.289 1171 64 23 2839 3988 244484171 244485324 0.000000e+00 1563.0
6 TraesCS3D01G194300 chr3A 96.741 767 20 4 2078 2840 244483324 244484089 0.000000e+00 1273.0
7 TraesCS3D01G194300 chr3A 87.166 187 15 7 1924 2106 270483497 270483316 1.980000e-48 204.0
8 TraesCS3D01G194300 chr3B 92.963 1819 70 30 134 1918 264162701 264164495 0.000000e+00 2597.0
9 TraesCS3D01G194300 chr3B 91.580 1152 51 19 2839 3988 264165355 264166462 0.000000e+00 1548.0
10 TraesCS3D01G194300 chr3B 97.207 752 13 4 2094 2840 264164525 264165273 0.000000e+00 1266.0
11 TraesCS3D01G194300 chr3B 86.740 181 16 7 1926 2103 276607087 276607262 1.190000e-45 195.0
12 TraesCS3D01G194300 chr3B 86.740 181 16 6 1929 2106 323987669 323987494 1.190000e-45 195.0
13 TraesCS3D01G194300 chr3B 87.586 145 8 5 1 145 264016102 264016236 4.340000e-35 159.0
14 TraesCS3D01G194300 chr3B 93.333 105 6 1 3991 4095 264166415 264166518 2.020000e-33 154.0
15 TraesCS3D01G194300 chr3B 83.158 95 14 2 4100 4193 83902437 83902344 7.470000e-13 86.1
16 TraesCS3D01G194300 chr5D 97.531 162 4 0 1918 2079 438186104 438185943 1.150000e-70 278.0
17 TraesCS3D01G194300 chr7D 96.753 154 5 0 1926 2079 141292825 141292672 1.500000e-64 257.0
18 TraesCS3D01G194300 chr7D 89.011 91 9 1 4100 4190 633364072 633364161 1.230000e-20 111.0
19 TraesCS3D01G194300 chr7D 83.750 80 9 3 4098 4177 565486309 565486234 5.810000e-09 73.1
20 TraesCS3D01G194300 chr1D 96.753 154 5 0 1926 2079 73732409 73732256 1.500000e-64 257.0
21 TraesCS3D01G194300 chr4B 95.541 157 4 2 1926 2080 659784358 659784203 9.000000e-62 248.0
22 TraesCS3D01G194300 chr2D 92.353 170 11 2 1912 2079 305515038 305514869 1.510000e-59 241.0
23 TraesCS3D01G194300 chr6B 91.279 172 13 2 1913 2082 699977617 699977446 2.520000e-57 233.0
24 TraesCS3D01G194300 chr7A 87.845 181 14 7 1926 2103 269017003 269017178 5.500000e-49 206.0
25 TraesCS3D01G194300 chr7A 87.293 181 15 6 1926 2103 201931319 201931494 2.560000e-47 200.0
26 TraesCS3D01G194300 chr7A 86.885 183 14 8 1926 2103 152911305 152911482 3.310000e-46 196.0
27 TraesCS3D01G194300 chr7A 86.740 181 16 7 1926 2103 513657905 513658080 1.190000e-45 195.0
28 TraesCS3D01G194300 chr4A 86.957 184 16 6 1926 2106 333891012 333890834 2.560000e-47 200.0
29 TraesCS3D01G194300 chr4A 86.813 182 14 8 1926 2103 673594075 673594250 1.190000e-45 195.0
30 TraesCS3D01G194300 chr2A 94.253 87 5 0 4107 4193 180094916 180094830 2.630000e-27 134.0
31 TraesCS3D01G194300 chr1B 88.421 95 6 4 4096 4190 305419323 305419412 4.430000e-20 110.0
32 TraesCS3D01G194300 chr1B 89.474 76 6 1 4102 4177 9993713 9993786 1.240000e-15 95.3
33 TraesCS3D01G194300 chr5A 91.139 79 7 0 4112 4190 306889322 306889244 1.590000e-19 108.0
34 TraesCS3D01G194300 chr2B 89.744 78 8 0 4113 4190 461604338 461604415 2.670000e-17 100.0
35 TraesCS3D01G194300 chr5B 88.406 69 7 1 4107 4175 616028470 616028537 9.660000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G194300 chr3D 185331463 185335655 4192 False 7744.00 7744 100.00000 1 4193 1 chr3D.!!$F1 4192
1 TraesCS3D01G194300 chr3A 244481432 244485324 3892 False 1893.00 2843 93.93300 21 3988 3 chr3A.!!$F1 3967
2 TraesCS3D01G194300 chr3B 264162701 264166518 3817 False 1391.25 2597 93.77075 134 4095 4 chr3B.!!$F3 3961

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
770 774 0.178767 TAATCACATGCGGCTGCTCT 59.821 50.0 20.27 2.88 43.34 4.09 F
1769 1811 0.107897 CAGGCACGCTGGGTATGTAA 60.108 55.0 0.00 0.00 0.00 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2185 2246 0.110486 GGTCCAGAGCCAGGTTGAAA 59.890 55.0 0.00 0.00 0.00 2.69 R
3754 3939 0.663153 GGGAAATGCTATCGTGGCAC 59.337 55.0 7.79 7.79 42.69 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.937469 CAAGTGTTGGTTGCTCACAA 57.063 45.000 0.00 0.00 34.94 3.33
34 35 4.635765 TGCTCACAACATATGGAAAGTAGC 59.364 41.667 7.80 9.04 0.00 3.58
46 47 9.155975 CATATGGAAAGTAGCCATCTATTGTAC 57.844 37.037 0.00 0.00 44.70 2.90
60 61 8.950210 CCATCTATTGTACTGTTTGTCTTGATT 58.050 33.333 0.00 0.00 0.00 2.57
96 97 4.458989 TCCAAGCAAGTAAATAGGCAACAG 59.541 41.667 0.00 0.00 41.41 3.16
138 139 1.424403 CTATGTGGTGCAAACGACGA 58.576 50.000 0.00 0.00 0.00 4.20
227 228 7.304735 TCACATTTATTTTTCGACCATGTCAG 58.695 34.615 0.00 0.00 32.09 3.51
240 241 4.277476 ACCATGTCAGTGGAAACTTTTGA 58.723 39.130 0.00 0.00 42.02 2.69
261 262 8.422973 TTTGATCATTTCTTTTTGTGAAGTGG 57.577 30.769 0.00 0.00 33.73 4.00
263 264 7.954835 TGATCATTTCTTTTTGTGAAGTGGAT 58.045 30.769 0.00 0.00 33.73 3.41
265 266 9.264719 GATCATTTCTTTTTGTGAAGTGGATTT 57.735 29.630 0.00 0.00 33.73 2.17
316 317 0.249155 CGCATCATGGCCAATGTTCC 60.249 55.000 10.96 0.00 37.56 3.62
400 401 5.960105 GCATACATTCACGAGCTAAAAAGAC 59.040 40.000 0.00 0.00 0.00 3.01
440 441 0.598065 AAGAAAATTGCGCGCCTCTT 59.402 45.000 30.77 22.78 0.00 2.85
449 450 0.794605 GCGCGCCTCTTGTTCATTTC 60.795 55.000 23.24 0.00 0.00 2.17
456 457 5.280945 CGCCTCTTGTTCATTTCTTTTCAA 58.719 37.500 0.00 0.00 0.00 2.69
477 478 7.490657 TCAATTATATTACCCCGCTGACTAT 57.509 36.000 0.00 0.00 0.00 2.12
548 550 7.692705 GGTTCGATTGCAACTAAAAAGATACTC 59.307 37.037 0.00 0.00 0.00 2.59
635 637 0.541863 GGTCACGGGAATGTCCATCT 59.458 55.000 0.00 0.00 38.64 2.90
699 702 4.286297 TCACCTCAAACCATGGTTAGAG 57.714 45.455 30.01 21.41 37.35 2.43
732 735 5.438761 AGTACATGTTGCTTTGTTCTTCC 57.561 39.130 2.30 0.00 0.00 3.46
766 770 3.002656 CCTAGTTTAATCACATGCGGCTG 59.997 47.826 0.00 0.00 0.00 4.85
767 771 1.133025 AGTTTAATCACATGCGGCTGC 59.867 47.619 11.65 11.65 43.20 5.25
768 772 1.133025 GTTTAATCACATGCGGCTGCT 59.867 47.619 20.27 0.83 43.34 4.24
770 774 0.178767 TAATCACATGCGGCTGCTCT 59.821 50.000 20.27 2.88 43.34 4.09
771 775 1.094073 AATCACATGCGGCTGCTCTC 61.094 55.000 20.27 0.00 43.34 3.20
772 776 2.937379 ATCACATGCGGCTGCTCTCC 62.937 60.000 20.27 0.00 43.34 3.71
773 777 3.397439 ACATGCGGCTGCTCTCCT 61.397 61.111 20.27 0.00 43.34 3.69
814 818 6.545666 ACAATGATACCAACTCTGAAACAACA 59.454 34.615 0.00 0.00 0.00 3.33
815 819 7.068103 ACAATGATACCAACTCTGAAACAACAA 59.932 33.333 0.00 0.00 0.00 2.83
816 820 7.765695 ATGATACCAACTCTGAAACAACAAT 57.234 32.000 0.00 0.00 0.00 2.71
847 851 1.875157 GCAAAAGGGCCTTGCAAGAAG 60.875 52.381 28.05 12.99 46.78 2.85
857 861 4.886489 GGCCTTGCAAGAAGAAGAAGATAT 59.114 41.667 28.05 0.00 0.00 1.63
858 862 6.058183 GGCCTTGCAAGAAGAAGAAGATATA 58.942 40.000 28.05 0.00 0.00 0.86
859 863 6.714356 GGCCTTGCAAGAAGAAGAAGATATAT 59.286 38.462 28.05 0.00 0.00 0.86
860 864 7.880195 GGCCTTGCAAGAAGAAGAAGATATATA 59.120 37.037 28.05 0.00 0.00 0.86
861 865 9.277783 GCCTTGCAAGAAGAAGAAGATATATAA 57.722 33.333 28.05 0.00 0.00 0.98
970 1004 2.766263 AGCCGAAGATTACACCTCATCA 59.234 45.455 0.00 0.00 0.00 3.07
1102 1138 4.719369 GTTCCGCGCTGTCCGTCT 62.719 66.667 5.56 0.00 39.71 4.18
1692 1731 1.175983 TGATGCCCGCGTTTCCTTTT 61.176 50.000 4.92 0.00 0.00 2.27
1769 1811 0.107897 CAGGCACGCTGGGTATGTAA 60.108 55.000 0.00 0.00 0.00 2.41
1772 1818 1.602377 GGCACGCTGGGTATGTAATTC 59.398 52.381 0.00 0.00 0.00 2.17
1791 1837 4.437682 TTCCGCTCTTATTCCCATCAAT 57.562 40.909 0.00 0.00 0.00 2.57
1796 1842 5.049405 CCGCTCTTATTCCCATCAATACAAC 60.049 44.000 0.00 0.00 0.00 3.32
1797 1843 5.333339 CGCTCTTATTCCCATCAATACAACG 60.333 44.000 0.00 0.00 0.00 4.10
1798 1844 5.560953 GCTCTTATTCCCATCAATACAACGC 60.561 44.000 0.00 0.00 0.00 4.84
1799 1845 5.432645 TCTTATTCCCATCAATACAACGCA 58.567 37.500 0.00 0.00 0.00 5.24
1800 1846 5.883115 TCTTATTCCCATCAATACAACGCAA 59.117 36.000 0.00 0.00 0.00 4.85
1801 1847 6.545666 TCTTATTCCCATCAATACAACGCAAT 59.454 34.615 0.00 0.00 0.00 3.56
1802 1848 7.717436 TCTTATTCCCATCAATACAACGCAATA 59.283 33.333 0.00 0.00 0.00 1.90
1803 1849 5.493133 TTCCCATCAATACAACGCAATAC 57.507 39.130 0.00 0.00 0.00 1.89
1804 1850 4.518249 TCCCATCAATACAACGCAATACA 58.482 39.130 0.00 0.00 0.00 2.29
1805 1851 4.944317 TCCCATCAATACAACGCAATACAA 59.056 37.500 0.00 0.00 0.00 2.41
1806 1852 5.592282 TCCCATCAATACAACGCAATACAAT 59.408 36.000 0.00 0.00 0.00 2.71
1817 1863 7.247728 ACAACGCAATACAATACAATTCGATT 58.752 30.769 0.00 0.00 0.00 3.34
1826 1872 2.396590 ACAATTCGATTGGGCGTAGT 57.603 45.000 10.82 0.00 44.42 2.73
1832 1885 1.135199 TCGATTGGGCGTAGTCAGAAC 60.135 52.381 0.00 0.00 0.00 3.01
1869 1922 3.795688 TGACCAGAAATGCCTTCTTCT 57.204 42.857 0.00 0.00 41.97 2.85
1928 1981 7.011773 CGCAAGAATTATCAACTATTCATCCG 58.988 38.462 0.00 0.00 43.02 4.18
1929 1982 7.307396 CGCAAGAATTATCAACTATTCATCCGT 60.307 37.037 0.00 0.00 43.02 4.69
1930 1983 8.345565 GCAAGAATTATCAACTATTCATCCGTT 58.654 33.333 0.00 0.00 34.06 4.44
1931 1984 9.869844 CAAGAATTATCAACTATTCATCCGTTC 57.130 33.333 0.00 0.00 34.06 3.95
1932 1985 8.608844 AGAATTATCAACTATTCATCCGTTCC 57.391 34.615 0.00 0.00 34.06 3.62
1933 1986 8.432805 AGAATTATCAACTATTCATCCGTTCCT 58.567 33.333 0.00 0.00 34.06 3.36
1934 1987 9.706691 GAATTATCAACTATTCATCCGTTCCTA 57.293 33.333 0.00 0.00 32.35 2.94
1948 2001 9.542462 TCATCCGTTCCTAAATATAAGTCTTTG 57.458 33.333 0.00 0.00 0.00 2.77
1949 2002 9.542462 CATCCGTTCCTAAATATAAGTCTTTGA 57.458 33.333 0.00 0.00 0.00 2.69
1951 2004 9.595823 TCCGTTCCTAAATATAAGTCTTTGAAG 57.404 33.333 0.00 0.00 0.00 3.02
1952 2005 9.595823 CCGTTCCTAAATATAAGTCTTTGAAGA 57.404 33.333 0.00 0.00 0.00 2.87
1965 2018 8.558973 AAGTCTTTGAAGAGATTTCACTATGG 57.441 34.615 0.00 0.00 35.32 2.74
1966 2019 7.911651 AGTCTTTGAAGAGATTTCACTATGGA 58.088 34.615 0.00 0.00 35.32 3.41
1967 2020 7.821846 AGTCTTTGAAGAGATTTCACTATGGAC 59.178 37.037 0.00 0.00 35.32 4.02
1968 2021 7.821846 GTCTTTGAAGAGATTTCACTATGGACT 59.178 37.037 0.00 0.00 35.32 3.85
1969 2022 9.035890 TCTTTGAAGAGATTTCACTATGGACTA 57.964 33.333 0.00 0.00 0.00 2.59
1970 2023 9.829507 CTTTGAAGAGATTTCACTATGGACTAT 57.170 33.333 0.00 0.00 0.00 2.12
1976 2029 9.179909 AGAGATTTCACTATGGACTATATACGG 57.820 37.037 0.00 0.00 0.00 4.02
1977 2030 9.175312 GAGATTTCACTATGGACTATATACGGA 57.825 37.037 0.00 0.00 0.00 4.69
1978 2031 9.529823 AGATTTCACTATGGACTATATACGGAA 57.470 33.333 0.00 0.00 0.00 4.30
1979 2032 9.570488 GATTTCACTATGGACTATATACGGAAC 57.430 37.037 0.00 0.00 0.00 3.62
1980 2033 8.467963 TTTCACTATGGACTATATACGGAACA 57.532 34.615 0.00 0.00 0.00 3.18
1981 2034 8.467963 TTCACTATGGACTATATACGGAACAA 57.532 34.615 0.00 0.00 0.00 2.83
1982 2035 8.467963 TCACTATGGACTATATACGGAACAAA 57.532 34.615 0.00 0.00 0.00 2.83
1983 2036 8.916062 TCACTATGGACTATATACGGAACAAAA 58.084 33.333 0.00 0.00 0.00 2.44
1984 2037 9.706691 CACTATGGACTATATACGGAACAAAAT 57.293 33.333 0.00 0.00 0.00 1.82
1989 2042 9.537192 TGGACTATATACGGAACAAAATTAGTG 57.463 33.333 0.00 0.00 0.00 2.74
1990 2043 9.754382 GGACTATATACGGAACAAAATTAGTGA 57.246 33.333 0.00 0.00 0.00 3.41
1998 2051 8.561738 ACGGAACAAAATTAGTGAATCATACT 57.438 30.769 0.00 0.00 0.00 2.12
1999 2052 8.665685 ACGGAACAAAATTAGTGAATCATACTC 58.334 33.333 0.00 0.00 0.00 2.59
2000 2053 8.883731 CGGAACAAAATTAGTGAATCATACTCT 58.116 33.333 0.00 0.00 0.00 3.24
2022 2075 9.809096 ACTCTAAAATGCATCTATATACATCCG 57.191 33.333 0.00 0.00 0.00 4.18
2023 2076 9.809096 CTCTAAAATGCATCTATATACATCCGT 57.191 33.333 0.00 0.00 0.00 4.69
2028 2081 8.877808 AATGCATCTATATACATCCGTATGTG 57.122 34.615 3.56 0.00 45.99 3.21
2029 2082 6.805713 TGCATCTATATACATCCGTATGTGG 58.194 40.000 3.56 0.00 45.99 4.17
2030 2083 6.379988 TGCATCTATATACATCCGTATGTGGT 59.620 38.462 3.56 0.00 45.99 4.16
2031 2084 6.918569 GCATCTATATACATCCGTATGTGGTC 59.081 42.308 3.56 0.00 45.99 4.02
2032 2085 7.426410 CATCTATATACATCCGTATGTGGTCC 58.574 42.308 3.56 0.00 45.99 4.46
2033 2086 6.486941 TCTATATACATCCGTATGTGGTCCA 58.513 40.000 3.56 0.00 45.99 4.02
2034 2087 7.123383 TCTATATACATCCGTATGTGGTCCAT 58.877 38.462 3.56 0.00 45.99 3.41
2035 2088 8.276477 TCTATATACATCCGTATGTGGTCCATA 58.724 37.037 3.56 0.00 45.99 2.74
2036 2089 5.661056 ATACATCCGTATGTGGTCCATAG 57.339 43.478 3.56 0.00 45.99 2.23
2037 2090 3.305720 ACATCCGTATGTGGTCCATAGT 58.694 45.455 0.00 0.00 44.79 2.12
2038 2091 3.069586 ACATCCGTATGTGGTCCATAGTG 59.930 47.826 0.00 0.00 44.79 2.74
2039 2092 2.036387 TCCGTATGTGGTCCATAGTGG 58.964 52.381 0.00 0.00 36.71 4.00
2040 2093 2.036387 CCGTATGTGGTCCATAGTGGA 58.964 52.381 0.00 0.00 45.98 4.02
2079 2132 7.954620 ACTTATATTTAGGAACGGAGGGAGTAT 59.045 37.037 0.00 0.00 0.00 2.12
2082 2135 8.731591 ATATTTAGGAACGGAGGGAGTATTAA 57.268 34.615 0.00 0.00 0.00 1.40
2083 2136 5.859205 TTAGGAACGGAGGGAGTATTAAC 57.141 43.478 0.00 0.00 0.00 2.01
2084 2137 3.991683 AGGAACGGAGGGAGTATTAACT 58.008 45.455 0.00 0.00 39.21 2.24
2085 2138 5.134725 AGGAACGGAGGGAGTATTAACTA 57.865 43.478 0.00 0.00 35.56 2.24
2086 2139 4.892345 AGGAACGGAGGGAGTATTAACTAC 59.108 45.833 0.00 0.00 35.56 2.73
2087 2140 4.892345 GGAACGGAGGGAGTATTAACTACT 59.108 45.833 0.00 0.00 43.57 2.57
2185 2246 1.299976 GAACAAGGGGCTGTCCGAT 59.700 57.895 0.00 0.00 36.01 4.18
2494 2555 3.680196 GCTTCTTCTGCCTCTCGGTAAAT 60.680 47.826 0.00 0.00 0.00 1.40
2495 2556 4.508662 CTTCTTCTGCCTCTCGGTAAATT 58.491 43.478 0.00 0.00 0.00 1.82
2519 2580 3.956848 AGCTAATCCCTGCATTTTCTTCC 59.043 43.478 0.00 0.00 0.00 3.46
2567 2628 1.246056 ACAGCTGCGTGCAATTGGAT 61.246 50.000 15.27 0.00 45.94 3.41
2692 2753 7.770433 TGTCATCTATGAGGTAAAATGAAGTGG 59.230 37.037 0.00 0.00 37.51 4.00
2756 2819 8.299570 CCTAGTTGCTTCATTGAGTGTTTTATT 58.700 33.333 0.00 0.00 0.00 1.40
2883 3029 4.091365 TGACAATATTTGAGCTTCGACGTG 59.909 41.667 0.00 0.00 0.00 4.49
3153 3299 1.333636 CCCCAATCGAGTCTGGCTCT 61.334 60.000 7.78 0.00 41.98 4.09
3255 3401 4.459337 ACATAATCATGCATCATGCTCCTG 59.541 41.667 11.84 6.16 45.31 3.86
3378 3524 2.741517 TCACATCAACATGTAAGTGGCG 59.258 45.455 15.41 3.34 41.69 5.69
3498 3644 7.118390 AGCAATATAGCATCCGATTTTGTAGAC 59.882 37.037 0.00 0.00 36.85 2.59
3564 3747 7.044576 CGGCATTGACATTTTATTACCGTAAAC 60.045 37.037 0.00 0.00 32.53 2.01
3573 3756 6.957984 TTTATTACCGTAAACGTATGCACA 57.042 33.333 1.41 0.00 37.74 4.57
3574 3757 6.957984 TTATTACCGTAAACGTATGCACAA 57.042 33.333 1.41 0.00 37.74 3.33
3575 3758 5.859521 ATTACCGTAAACGTATGCACAAA 57.140 34.783 1.41 0.00 37.74 2.83
3576 3759 5.663795 TTACCGTAAACGTATGCACAAAA 57.336 34.783 1.41 0.00 37.74 2.44
3577 3760 4.752661 ACCGTAAACGTATGCACAAAAT 57.247 36.364 1.41 0.00 37.74 1.82
3578 3761 5.110940 ACCGTAAACGTATGCACAAAATT 57.889 34.783 1.41 0.00 37.74 1.82
3579 3762 6.238610 ACCGTAAACGTATGCACAAAATTA 57.761 33.333 1.41 0.00 37.74 1.40
3580 3763 6.666417 ACCGTAAACGTATGCACAAAATTAA 58.334 32.000 1.41 0.00 37.74 1.40
3581 3764 7.137426 ACCGTAAACGTATGCACAAAATTAAA 58.863 30.769 1.41 0.00 37.74 1.52
3582 3765 7.324135 ACCGTAAACGTATGCACAAAATTAAAG 59.676 33.333 1.41 0.00 37.74 1.85
3583 3766 7.534578 CCGTAAACGTATGCACAAAATTAAAGA 59.465 33.333 1.41 0.00 37.74 2.52
3584 3767 8.563949 CGTAAACGTATGCACAAAATTAAAGAG 58.436 33.333 0.00 0.00 34.11 2.85
3585 3768 9.389570 GTAAACGTATGCACAAAATTAAAGAGT 57.610 29.630 0.00 0.00 0.00 3.24
3587 3770 9.953697 AAACGTATGCACAAAATTAAAGAGTAA 57.046 25.926 0.00 0.00 0.00 2.24
3588 3771 9.953697 AACGTATGCACAAAATTAAAGAGTAAA 57.046 25.926 0.00 0.00 0.00 2.01
3589 3772 9.953697 ACGTATGCACAAAATTAAAGAGTAAAA 57.046 25.926 0.00 0.00 0.00 1.52
3661 3844 6.377327 AATATCACAAAACGATGCCCTTAG 57.623 37.500 0.00 0.00 0.00 2.18
3662 3845 2.432444 TCACAAAACGATGCCCTTAGG 58.568 47.619 0.00 0.00 0.00 2.69
3724 3907 9.787532 CATATGGAAAACTACACTTTTATGTGG 57.212 33.333 0.00 0.00 41.84 4.17
3730 3913 7.506328 AAACTACACTTTTATGTGGAACTCC 57.494 36.000 0.00 0.00 41.84 3.85
3731 3914 5.235516 ACTACACTTTTATGTGGAACTCCG 58.764 41.667 0.00 0.00 41.84 4.63
3754 3939 6.198216 CCGTAACAAAATGTGACCTCTTTTTG 59.802 38.462 15.38 15.38 42.60 2.44
3764 3949 3.071479 GACCTCTTTTTGTGCCACGATA 58.929 45.455 0.00 0.00 0.00 2.92
3765 3950 3.074412 ACCTCTTTTTGTGCCACGATAG 58.926 45.455 0.00 0.00 46.19 2.08
3809 3995 5.417580 AGTGTGGTTAACATTGTGAGTTGTT 59.582 36.000 8.10 0.00 41.97 2.83
3813 3999 7.283354 TGTGGTTAACATTGTGAGTTGTTATGA 59.717 33.333 8.10 0.00 37.94 2.15
3846 4038 0.611714 TACCTTTCCAGAAGCCGGTC 59.388 55.000 1.90 0.00 0.00 4.79
3847 4039 1.128188 ACCTTTCCAGAAGCCGGTCT 61.128 55.000 1.90 0.00 0.00 3.85
3848 4040 0.391793 CCTTTCCAGAAGCCGGTCTC 60.392 60.000 1.90 0.00 0.00 3.36
3849 4041 0.610687 CTTTCCAGAAGCCGGTCTCT 59.389 55.000 1.90 1.91 0.00 3.10
3850 4042 1.825474 CTTTCCAGAAGCCGGTCTCTA 59.175 52.381 1.90 0.00 0.00 2.43
3851 4043 2.160721 TTCCAGAAGCCGGTCTCTAT 57.839 50.000 1.90 0.00 0.00 1.98
3852 4044 1.403814 TCCAGAAGCCGGTCTCTATG 58.596 55.000 1.90 0.70 0.00 2.23
3853 4045 0.390860 CCAGAAGCCGGTCTCTATGG 59.609 60.000 1.90 6.47 0.00 2.74
3854 4046 0.390860 CAGAAGCCGGTCTCTATGGG 59.609 60.000 1.90 0.00 0.00 4.00
3855 4047 1.069935 GAAGCCGGTCTCTATGGGC 59.930 63.158 1.90 0.00 45.91 5.36
3856 4048 2.384653 GAAGCCGGTCTCTATGGGCC 62.385 65.000 1.90 0.00 46.75 5.80
3857 4049 4.301027 GCCGGTCTCTATGGGCCG 62.301 72.222 1.90 0.21 43.40 6.13
3858 4050 2.838225 CCGGTCTCTATGGGCCGT 60.838 66.667 2.58 2.58 42.36 5.68
3859 4051 2.432300 CCGGTCTCTATGGGCCGTT 61.432 63.158 2.17 0.00 42.36 4.44
3860 4052 1.067582 CGGTCTCTATGGGCCGTTC 59.932 63.158 2.17 0.00 39.41 3.95
3861 4053 1.392710 CGGTCTCTATGGGCCGTTCT 61.393 60.000 2.17 0.00 39.41 3.01
3862 4054 0.105039 GGTCTCTATGGGCCGTTCTG 59.895 60.000 2.17 0.00 0.00 3.02
3863 4055 0.105039 GTCTCTATGGGCCGTTCTGG 59.895 60.000 2.17 0.00 42.50 3.86
3888 4080 1.135527 CTAGGTCGGTTACGCAATGGA 59.864 52.381 0.00 0.00 40.69 3.41
3894 4086 1.470890 CGGTTACGCAATGGACCAATT 59.529 47.619 0.00 0.00 32.41 2.32
3952 4145 5.763876 AGGCTTGAAGTATAAGACAAGGT 57.236 39.130 0.00 0.00 39.70 3.50
3960 4153 3.770933 AGTATAAGACAAGGTAACCGGCA 59.229 43.478 0.00 0.00 37.17 5.69
3988 4181 6.872020 CGAATGACTCCTCTTAACCAACTTAA 59.128 38.462 0.00 0.00 0.00 1.85
3989 4182 7.386848 CGAATGACTCCTCTTAACCAACTTAAA 59.613 37.037 0.00 0.00 0.00 1.52
3990 4183 9.232473 GAATGACTCCTCTTAACCAACTTAAAT 57.768 33.333 0.00 0.00 0.00 1.40
3992 4185 9.668497 ATGACTCCTCTTAACCAACTTAAATAC 57.332 33.333 0.00 0.00 0.00 1.89
3993 4186 8.653191 TGACTCCTCTTAACCAACTTAAATACA 58.347 33.333 0.00 0.00 0.00 2.29
3994 4187 9.498176 GACTCCTCTTAACCAACTTAAATACAA 57.502 33.333 0.00 0.00 0.00 2.41
3995 4188 9.503399 ACTCCTCTTAACCAACTTAAATACAAG 57.497 33.333 0.00 0.00 0.00 3.16
3996 4189 9.720769 CTCCTCTTAACCAACTTAAATACAAGA 57.279 33.333 0.00 0.00 0.00 3.02
3997 4190 9.498176 TCCTCTTAACCAACTTAAATACAAGAC 57.502 33.333 0.00 0.00 0.00 3.01
3998 4191 9.280174 CCTCTTAACCAACTTAAATACAAGACA 57.720 33.333 0.00 0.00 0.00 3.41
4001 4194 9.893305 CTTAACCAACTTAAATACAAGACAAGG 57.107 33.333 0.00 0.00 0.00 3.61
4002 4195 6.327279 ACCAACTTAAATACAAGACAAGGC 57.673 37.500 0.00 0.00 0.00 4.35
4003 4196 5.830991 ACCAACTTAAATACAAGACAAGGCA 59.169 36.000 0.00 0.00 0.00 4.75
4004 4197 6.322712 ACCAACTTAAATACAAGACAAGGCAA 59.677 34.615 0.00 0.00 0.00 4.52
4005 4198 6.640907 CCAACTTAAATACAAGACAAGGCAAC 59.359 38.462 0.00 0.00 0.00 4.17
4006 4199 6.327279 ACTTAAATACAAGACAAGGCAACC 57.673 37.500 0.00 0.00 37.17 3.77
4007 4200 3.915437 AAATACAAGACAAGGCAACCG 57.085 42.857 0.00 0.00 37.17 4.44
4008 4201 1.821216 ATACAAGACAAGGCAACCGG 58.179 50.000 0.00 0.00 37.17 5.28
4009 4202 0.887387 TACAAGACAAGGCAACCGGC 60.887 55.000 0.00 0.00 43.74 6.13
4019 4212 2.481212 GCAACCGGCATCTGAATGA 58.519 52.632 0.00 0.00 43.97 2.57
4020 4213 0.099436 GCAACCGGCATCTGAATGAC 59.901 55.000 0.00 0.00 43.97 3.06
4021 4214 1.742761 CAACCGGCATCTGAATGACT 58.257 50.000 0.00 0.00 38.93 3.41
4022 4215 1.667724 CAACCGGCATCTGAATGACTC 59.332 52.381 0.00 0.00 38.93 3.36
4023 4216 0.179000 ACCGGCATCTGAATGACTCC 59.821 55.000 0.00 0.00 38.93 3.85
4024 4217 0.467384 CCGGCATCTGAATGACTCCT 59.533 55.000 0.00 0.00 38.93 3.69
4025 4218 1.539929 CCGGCATCTGAATGACTCCTC 60.540 57.143 0.00 0.00 38.93 3.71
4026 4219 1.411977 CGGCATCTGAATGACTCCTCT 59.588 52.381 0.00 0.00 38.93 3.69
4027 4220 2.158986 CGGCATCTGAATGACTCCTCTT 60.159 50.000 0.00 0.00 38.93 2.85
4028 4221 3.068732 CGGCATCTGAATGACTCCTCTTA 59.931 47.826 0.00 0.00 38.93 2.10
4029 4222 4.442052 CGGCATCTGAATGACTCCTCTTAA 60.442 45.833 0.00 0.00 38.93 1.85
4030 4223 4.813697 GGCATCTGAATGACTCCTCTTAAC 59.186 45.833 0.00 0.00 37.97 2.01
4031 4224 4.813697 GCATCTGAATGACTCCTCTTAACC 59.186 45.833 0.00 0.00 34.61 2.85
4032 4225 5.627735 GCATCTGAATGACTCCTCTTAACCA 60.628 44.000 0.00 0.00 34.61 3.67
4033 4226 6.409704 CATCTGAATGACTCCTCTTAACCAA 58.590 40.000 0.00 0.00 34.61 3.67
4034 4227 5.794894 TCTGAATGACTCCTCTTAACCAAC 58.205 41.667 0.00 0.00 0.00 3.77
4035 4228 5.544176 TCTGAATGACTCCTCTTAACCAACT 59.456 40.000 0.00 0.00 0.00 3.16
4036 4229 6.043243 TCTGAATGACTCCTCTTAACCAACTT 59.957 38.462 0.00 0.00 0.00 2.66
4037 4230 7.234782 TCTGAATGACTCCTCTTAACCAACTTA 59.765 37.037 0.00 0.00 0.00 2.24
4045 4238 7.016268 ACTCCTCTTAACCAACTTAGAACATGA 59.984 37.037 0.00 0.00 0.00 3.07
4058 4251 7.727181 ACTTAGAACATGAAACACTAGACACT 58.273 34.615 0.00 0.00 0.00 3.55
4063 4256 2.833794 TGAAACACTAGACACTGGCAC 58.166 47.619 0.00 0.00 0.00 5.01
4077 4270 2.423064 GGCACCCCATAAAAGCCGG 61.423 63.158 0.00 0.00 35.42 6.13
4095 4288 2.507854 GGGCTAGGCTGGTCGCATA 61.508 63.158 16.80 0.00 41.67 3.14
4110 4303 4.148891 GTCGCATAGACTTTTTCGTTTGG 58.851 43.478 0.00 0.00 46.13 3.28
4111 4304 4.059511 TCGCATAGACTTTTTCGTTTGGA 58.940 39.130 0.00 0.00 0.00 3.53
4112 4305 4.512198 TCGCATAGACTTTTTCGTTTGGAA 59.488 37.500 0.00 0.00 0.00 3.53
4113 4306 5.007823 TCGCATAGACTTTTTCGTTTGGAAA 59.992 36.000 0.00 0.00 42.75 3.13
4114 4307 8.407259 GTCGCATAGACTTTTTCGTTTGGAAAA 61.407 37.037 0.00 0.00 46.50 2.29
4123 4316 6.963083 TTTTCGTTTGGAAAAGGAGGATAA 57.037 33.333 0.00 0.00 46.80 1.75
4124 4317 6.963083 TTTCGTTTGGAAAAGGAGGATAAA 57.037 33.333 0.00 0.00 41.55 1.40
4125 4318 5.952526 TCGTTTGGAAAAGGAGGATAAAC 57.047 39.130 0.00 0.00 0.00 2.01
4126 4319 4.763279 TCGTTTGGAAAAGGAGGATAAACC 59.237 41.667 0.00 0.00 39.35 3.27
4127 4320 4.082408 CGTTTGGAAAAGGAGGATAAACCC 60.082 45.833 0.00 0.00 40.05 4.11
4128 4321 3.750501 TGGAAAAGGAGGATAAACCCC 57.249 47.619 0.00 0.00 40.05 4.95
4129 4322 2.313643 TGGAAAAGGAGGATAAACCCCC 59.686 50.000 0.00 0.00 40.05 5.40
4130 4323 2.313643 GGAAAAGGAGGATAAACCCCCA 59.686 50.000 0.00 0.00 40.05 4.96
4131 4324 3.627492 GGAAAAGGAGGATAAACCCCCAG 60.627 52.174 0.00 0.00 40.05 4.45
4132 4325 0.927029 AAGGAGGATAAACCCCCAGC 59.073 55.000 0.00 0.00 40.05 4.85
4133 4326 0.994050 AGGAGGATAAACCCCCAGCC 60.994 60.000 0.00 0.00 40.05 4.85
4134 4327 0.994050 GGAGGATAAACCCCCAGCCT 60.994 60.000 0.00 0.00 40.05 4.58
4135 4328 0.474614 GAGGATAAACCCCCAGCCTC 59.525 60.000 0.00 0.00 39.93 4.70
4136 4329 0.046397 AGGATAAACCCCCAGCCTCT 59.954 55.000 0.00 0.00 40.05 3.69
4137 4330 0.183731 GGATAAACCCCCAGCCTCTG 59.816 60.000 0.00 0.00 0.00 3.35
4138 4331 0.466372 GATAAACCCCCAGCCTCTGC 60.466 60.000 0.00 0.00 37.95 4.26
4139 4332 1.214305 ATAAACCCCCAGCCTCTGCA 61.214 55.000 0.00 0.00 41.13 4.41
4140 4333 1.214305 TAAACCCCCAGCCTCTGCAT 61.214 55.000 0.00 0.00 41.13 3.96
4141 4334 2.505364 AAACCCCCAGCCTCTGCATC 62.505 60.000 0.00 0.00 41.13 3.91
4142 4335 3.095163 CCCCCAGCCTCTGCATCT 61.095 66.667 0.00 0.00 41.13 2.90
4143 4336 1.767672 CCCCCAGCCTCTGCATCTA 60.768 63.158 0.00 0.00 41.13 1.98
4144 4337 1.753470 CCCCAGCCTCTGCATCTAG 59.247 63.158 0.00 0.00 41.13 2.43
4145 4338 0.762082 CCCCAGCCTCTGCATCTAGA 60.762 60.000 0.00 0.00 41.13 2.43
4146 4339 0.392336 CCCAGCCTCTGCATCTAGAC 59.608 60.000 0.00 0.00 41.13 2.59
4147 4340 0.031857 CCAGCCTCTGCATCTAGACG 59.968 60.000 0.00 0.00 41.13 4.18
4148 4341 1.028130 CAGCCTCTGCATCTAGACGA 58.972 55.000 0.00 0.00 41.13 4.20
4149 4342 1.612950 CAGCCTCTGCATCTAGACGAT 59.387 52.381 0.00 0.00 41.13 3.73
4157 4350 1.066136 CATCTAGACGATGCATGCGG 58.934 55.000 14.09 7.44 42.75 5.69
4158 4351 0.668706 ATCTAGACGATGCATGCGGC 60.669 55.000 14.09 10.26 45.13 6.53
4159 4352 2.280119 TAGACGATGCATGCGGCC 60.280 61.111 14.09 3.42 43.89 6.13
4160 4353 2.976692 CTAGACGATGCATGCGGCCA 62.977 60.000 14.09 6.57 43.89 5.36
4161 4354 2.381838 TAGACGATGCATGCGGCCAT 62.382 55.000 14.09 0.00 43.89 4.40
4162 4355 3.245948 GACGATGCATGCGGCCATC 62.246 63.158 14.09 9.35 43.89 3.51
4163 4356 2.976350 CGATGCATGCGGCCATCT 60.976 61.111 14.09 0.00 43.89 2.90
4164 4357 2.549198 CGATGCATGCGGCCATCTT 61.549 57.895 14.09 0.00 43.89 2.40
4165 4358 1.229975 CGATGCATGCGGCCATCTTA 61.230 55.000 14.09 0.00 43.89 2.10
4166 4359 0.953727 GATGCATGCGGCCATCTTAA 59.046 50.000 14.09 0.00 43.89 1.85
4167 4360 1.542915 GATGCATGCGGCCATCTTAAT 59.457 47.619 14.09 0.00 43.89 1.40
4168 4361 2.268762 TGCATGCGGCCATCTTAATA 57.731 45.000 14.09 0.00 43.89 0.98
4169 4362 2.580962 TGCATGCGGCCATCTTAATAA 58.419 42.857 14.09 0.00 43.89 1.40
4170 4363 3.156293 TGCATGCGGCCATCTTAATAAT 58.844 40.909 14.09 0.00 43.89 1.28
4171 4364 3.573538 TGCATGCGGCCATCTTAATAATT 59.426 39.130 14.09 0.00 43.89 1.40
4172 4365 4.764308 TGCATGCGGCCATCTTAATAATTA 59.236 37.500 14.09 0.00 43.89 1.40
4173 4366 5.418524 TGCATGCGGCCATCTTAATAATTAT 59.581 36.000 14.09 0.00 43.89 1.28
4174 4367 6.071447 TGCATGCGGCCATCTTAATAATTATT 60.071 34.615 14.09 14.86 43.89 1.40
4175 4368 6.473455 GCATGCGGCCATCTTAATAATTATTC 59.527 38.462 13.95 0.00 36.11 1.75
4176 4369 7.537715 CATGCGGCCATCTTAATAATTATTCA 58.462 34.615 13.95 3.06 0.00 2.57
4177 4370 7.701539 TGCGGCCATCTTAATAATTATTCAT 57.298 32.000 13.95 3.23 0.00 2.57
4178 4371 8.800370 TGCGGCCATCTTAATAATTATTCATA 57.200 30.769 13.95 1.96 0.00 2.15
4179 4372 8.892723 TGCGGCCATCTTAATAATTATTCATAG 58.107 33.333 13.95 10.27 0.00 2.23
4180 4373 9.109393 GCGGCCATCTTAATAATTATTCATAGA 57.891 33.333 13.95 14.45 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.939460 GTTGTGAGCAACCAACACTT 57.061 45.000 7.31 0.00 46.81 3.16
10 11 5.123820 GCTACTTTCCATATGTTGTGAGCAA 59.876 40.000 1.24 0.00 0.00 3.91
11 12 4.635765 GCTACTTTCCATATGTTGTGAGCA 59.364 41.667 1.24 0.00 0.00 4.26
12 13 4.035675 GGCTACTTTCCATATGTTGTGAGC 59.964 45.833 1.24 3.49 0.00 4.26
13 14 5.185454 TGGCTACTTTCCATATGTTGTGAG 58.815 41.667 1.24 0.00 0.00 3.51
14 15 5.172687 TGGCTACTTTCCATATGTTGTGA 57.827 39.130 1.24 0.00 0.00 3.58
15 16 5.824624 AGATGGCTACTTTCCATATGTTGTG 59.175 40.000 1.24 0.00 43.90 3.33
16 17 6.006275 AGATGGCTACTTTCCATATGTTGT 57.994 37.500 1.24 0.00 43.90 3.32
17 18 8.509690 CAATAGATGGCTACTTTCCATATGTTG 58.490 37.037 10.21 10.21 43.06 3.33
18 19 8.220559 ACAATAGATGGCTACTTTCCATATGTT 58.779 33.333 1.24 0.00 43.90 2.71
19 20 7.749666 ACAATAGATGGCTACTTTCCATATGT 58.250 34.615 1.24 0.00 43.90 2.29
26 27 8.391106 CAAACAGTACAATAGATGGCTACTTTC 58.609 37.037 0.00 0.00 0.00 2.62
27 28 7.883311 ACAAACAGTACAATAGATGGCTACTTT 59.117 33.333 0.00 0.00 0.00 2.66
34 35 7.905604 TCAAGACAAACAGTACAATAGATGG 57.094 36.000 0.00 0.00 0.00 3.51
69 70 5.750524 TGCCTATTTACTTGCTTGGATGTA 58.249 37.500 0.00 0.00 0.00 2.29
96 97 5.529060 AGCTTGTTAGGCAATACTAGCATTC 59.471 40.000 16.96 0.75 42.80 2.67
227 228 9.706846 CAAAAAGAAATGATCAAAAGTTTCCAC 57.293 29.630 13.42 0.00 32.43 4.02
240 241 9.264719 GAAATCCACTTCACAAAAAGAAATGAT 57.735 29.630 0.00 0.00 0.00 2.45
261 262 6.749118 GGCCATGAATTATCAATAGCGAAATC 59.251 38.462 0.00 0.00 39.49 2.17
263 264 5.534278 TGGCCATGAATTATCAATAGCGAAA 59.466 36.000 0.00 0.00 39.49 3.46
265 266 4.650734 TGGCCATGAATTATCAATAGCGA 58.349 39.130 0.00 0.00 39.49 4.93
316 317 8.956533 TTTTCTCCTTCTTTTAAAACCATTGG 57.043 30.769 0.00 0.00 0.00 3.16
449 450 7.228706 AGTCAGCGGGGTAATATAATTGAAAAG 59.771 37.037 0.00 0.00 0.00 2.27
456 457 9.043548 AGTTTATAGTCAGCGGGGTAATATAAT 57.956 33.333 0.00 0.00 0.00 1.28
635 637 8.417106 TGCAATCAATTTCTTGTTAACCAACTA 58.583 29.630 2.48 0.00 35.56 2.24
667 669 3.316868 GGTTTGAGGTGAAAACCGATTGA 59.683 43.478 2.56 0.00 45.15 2.57
699 702 9.289303 CAAAGCAACATGTACTAAATTATGACC 57.711 33.333 0.00 0.00 0.00 4.02
732 735 7.334921 TGTGATTAAACTAGGGTAAAATCCACG 59.665 37.037 0.00 0.00 31.35 4.94
766 770 7.422399 TGTTTATTTACACACAAAAGGAGAGC 58.578 34.615 0.00 0.00 0.00 4.09
767 771 9.965824 ATTGTTTATTTACACACAAAAGGAGAG 57.034 29.630 0.00 0.00 33.02 3.20
768 772 9.743057 CATTGTTTATTTACACACAAAAGGAGA 57.257 29.630 0.00 0.00 33.02 3.71
814 818 5.045651 AGGCCCTTTTGCTTTGCTTATTATT 60.046 36.000 0.00 0.00 0.00 1.40
815 819 4.471025 AGGCCCTTTTGCTTTGCTTATTAT 59.529 37.500 0.00 0.00 0.00 1.28
816 820 3.837731 AGGCCCTTTTGCTTTGCTTATTA 59.162 39.130 0.00 0.00 0.00 0.98
889 921 1.003355 CACACGCCCATCTCACCTT 60.003 57.895 0.00 0.00 0.00 3.50
970 1004 2.125269 GTGGTGCGATAAGGCGGT 60.125 61.111 0.00 0.00 35.06 5.68
1102 1138 2.662596 GGACGCCATCCTGTGTGA 59.337 61.111 0.00 0.00 45.22 3.58
1751 1790 0.837272 ATTACATACCCAGCGTGCCT 59.163 50.000 0.00 0.00 0.00 4.75
1769 1811 4.437682 TTGATGGGAATAAGAGCGGAAT 57.562 40.909 0.00 0.00 0.00 3.01
1772 1818 4.641396 TGTATTGATGGGAATAAGAGCGG 58.359 43.478 0.00 0.00 0.00 5.52
1791 1837 7.292129 TCGAATTGTATTGTATTGCGTTGTA 57.708 32.000 0.00 0.00 0.00 2.41
1796 1842 5.624900 CCCAATCGAATTGTATTGTATTGCG 59.375 40.000 0.00 0.00 38.59 4.85
1797 1843 5.402270 GCCCAATCGAATTGTATTGTATTGC 59.598 40.000 0.00 3.42 38.59 3.56
1798 1844 5.624900 CGCCCAATCGAATTGTATTGTATTG 59.375 40.000 0.00 0.00 38.59 1.90
1799 1845 5.298276 ACGCCCAATCGAATTGTATTGTATT 59.702 36.000 0.00 0.00 38.59 1.89
1800 1846 4.819630 ACGCCCAATCGAATTGTATTGTAT 59.180 37.500 0.00 0.00 38.59 2.29
1801 1847 4.193090 ACGCCCAATCGAATTGTATTGTA 58.807 39.130 0.00 0.00 38.59 2.41
1802 1848 3.013921 ACGCCCAATCGAATTGTATTGT 58.986 40.909 0.00 0.00 38.59 2.71
1803 1849 3.691049 ACGCCCAATCGAATTGTATTG 57.309 42.857 0.00 3.39 38.59 1.90
1804 1850 4.448210 ACTACGCCCAATCGAATTGTATT 58.552 39.130 0.00 0.00 38.59 1.89
1805 1851 4.056050 GACTACGCCCAATCGAATTGTAT 58.944 43.478 0.00 0.00 38.59 2.29
1806 1852 3.119065 TGACTACGCCCAATCGAATTGTA 60.119 43.478 0.00 0.00 38.59 2.41
1817 1863 1.122632 TTGGGTTCTGACTACGCCCA 61.123 55.000 0.00 0.00 46.59 5.36
1826 1872 3.499338 AGTCAATGCATTTGGGTTCTGA 58.501 40.909 9.83 0.00 35.92 3.27
1832 1885 3.700539 TGGTCATAGTCAATGCATTTGGG 59.299 43.478 9.83 0.00 35.92 4.12
1869 1922 9.730420 GTTGAAGCTTAAACTTTTTACATGAGA 57.270 29.630 18.12 0.00 0.00 3.27
1923 1976 9.542462 TCAAAGACTTATATTTAGGAACGGATG 57.458 33.333 0.00 0.00 0.00 3.51
1925 1978 9.595823 CTTCAAAGACTTATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
1926 1979 9.595823 TCTTCAAAGACTTATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
1939 1992 9.658799 CCATAGTGAAATCTCTTCAAAGACTTA 57.341 33.333 0.00 0.00 0.00 2.24
1940 1993 8.378565 TCCATAGTGAAATCTCTTCAAAGACTT 58.621 33.333 0.00 0.00 0.00 3.01
1941 1994 7.821846 GTCCATAGTGAAATCTCTTCAAAGACT 59.178 37.037 0.00 0.00 0.00 3.24
1942 1995 7.821846 AGTCCATAGTGAAATCTCTTCAAAGAC 59.178 37.037 0.00 0.00 0.00 3.01
1943 1996 7.911651 AGTCCATAGTGAAATCTCTTCAAAGA 58.088 34.615 0.00 0.00 0.00 2.52
1944 1997 9.829507 ATAGTCCATAGTGAAATCTCTTCAAAG 57.170 33.333 0.00 0.00 0.00 2.77
1950 2003 9.179909 CCGTATATAGTCCATAGTGAAATCTCT 57.820 37.037 0.00 0.00 0.00 3.10
1951 2004 9.175312 TCCGTATATAGTCCATAGTGAAATCTC 57.825 37.037 0.00 0.00 0.00 2.75
1952 2005 9.529823 TTCCGTATATAGTCCATAGTGAAATCT 57.470 33.333 0.00 0.00 0.00 2.40
1953 2006 9.570488 GTTCCGTATATAGTCCATAGTGAAATC 57.430 37.037 0.00 0.00 0.00 2.17
1954 2007 9.085645 TGTTCCGTATATAGTCCATAGTGAAAT 57.914 33.333 0.00 0.00 0.00 2.17
1955 2008 8.467963 TGTTCCGTATATAGTCCATAGTGAAA 57.532 34.615 0.00 0.00 0.00 2.69
1956 2009 8.467963 TTGTTCCGTATATAGTCCATAGTGAA 57.532 34.615 0.00 0.00 0.00 3.18
1957 2010 8.467963 TTTGTTCCGTATATAGTCCATAGTGA 57.532 34.615 0.00 0.00 0.00 3.41
1958 2011 9.706691 ATTTTGTTCCGTATATAGTCCATAGTG 57.293 33.333 0.00 0.00 0.00 2.74
1963 2016 9.537192 CACTAATTTTGTTCCGTATATAGTCCA 57.463 33.333 0.00 0.00 0.00 4.02
1964 2017 9.754382 TCACTAATTTTGTTCCGTATATAGTCC 57.246 33.333 0.00 0.00 0.00 3.85
1972 2025 9.661563 AGTATGATTCACTAATTTTGTTCCGTA 57.338 29.630 0.00 0.00 0.00 4.02
1973 2026 8.561738 AGTATGATTCACTAATTTTGTTCCGT 57.438 30.769 0.00 0.00 0.00 4.69
1974 2027 8.883731 AGAGTATGATTCACTAATTTTGTTCCG 58.116 33.333 0.00 0.00 0.00 4.30
1996 2049 9.809096 CGGATGTATATAGATGCATTTTAGAGT 57.191 33.333 11.19 0.00 38.38 3.24
1997 2050 9.809096 ACGGATGTATATAGATGCATTTTAGAG 57.191 33.333 11.19 0.00 38.38 2.43
2001 2054 9.890629 ACATACGGATGTATATAGATGCATTTT 57.109 29.630 12.79 0.00 44.77 1.82
2002 2055 9.317936 CACATACGGATGTATATAGATGCATTT 57.682 33.333 14.23 0.00 44.82 2.32
2003 2056 7.928167 CCACATACGGATGTATATAGATGCATT 59.072 37.037 14.23 1.23 44.82 3.56
2004 2057 7.069950 ACCACATACGGATGTATATAGATGCAT 59.930 37.037 14.23 0.00 44.82 3.96
2005 2058 6.379988 ACCACATACGGATGTATATAGATGCA 59.620 38.462 14.23 0.00 44.82 3.96
2006 2059 6.806751 ACCACATACGGATGTATATAGATGC 58.193 40.000 14.23 0.00 44.82 3.91
2007 2060 7.068226 TGGACCACATACGGATGTATATAGATG 59.932 40.741 14.23 0.00 44.82 2.90
2008 2061 7.123383 TGGACCACATACGGATGTATATAGAT 58.877 38.462 14.23 0.00 44.82 1.98
2009 2062 6.486941 TGGACCACATACGGATGTATATAGA 58.513 40.000 14.23 0.00 44.82 1.98
2010 2063 6.769134 TGGACCACATACGGATGTATATAG 57.231 41.667 14.23 0.00 44.82 1.31
2011 2064 8.057011 ACTATGGACCACATACGGATGTATATA 58.943 37.037 14.23 7.10 44.82 0.86
2012 2065 6.895756 ACTATGGACCACATACGGATGTATAT 59.104 38.462 14.23 1.16 44.82 0.86
2013 2066 6.152154 CACTATGGACCACATACGGATGTATA 59.848 42.308 14.23 6.48 44.82 1.47
2014 2067 5.047306 CACTATGGACCACATACGGATGTAT 60.047 44.000 14.23 4.48 44.82 2.29
2015 2068 4.279922 CACTATGGACCACATACGGATGTA 59.720 45.833 14.23 0.00 44.82 2.29
2016 2069 6.014967 CCACTATGGACCACATACGGATGT 62.015 50.000 7.68 7.68 43.21 3.06
2017 2070 3.554960 CCACTATGGACCACATACGGATG 60.555 52.174 5.94 5.94 40.96 3.51
2018 2071 2.632996 CCACTATGGACCACATACGGAT 59.367 50.000 0.00 0.00 40.96 4.18
2019 2072 2.036387 CCACTATGGACCACATACGGA 58.964 52.381 0.00 0.00 40.96 4.69
2020 2073 2.036387 TCCACTATGGACCACATACGG 58.964 52.381 0.00 0.00 42.67 4.02
2030 2083 6.897966 AGTCTTTGTAGAGATTCCACTATGGA 59.102 38.462 0.00 0.00 46.61 3.41
2031 2084 7.118496 AGTCTTTGTAGAGATTCCACTATGG 57.882 40.000 0.00 0.00 39.43 2.74
2047 2100 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
2048 2101 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
2049 2102 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2050 2103 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2051 2104 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2052 2105 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2053 2106 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2062 2115 5.134725 AGTTAATACTCCCTCCGTTCCTA 57.865 43.478 0.00 0.00 0.00 2.94
2063 2116 3.991683 AGTTAATACTCCCTCCGTTCCT 58.008 45.455 0.00 0.00 0.00 3.36
2066 2119 6.667661 AGTAGTAGTTAATACTCCCTCCGTT 58.332 40.000 0.00 0.00 43.90 4.44
2106 2159 4.761235 ACACAAATCATGCTGAGAACTG 57.239 40.909 0.00 0.00 0.00 3.16
2185 2246 0.110486 GGTCCAGAGCCAGGTTGAAA 59.890 55.000 0.00 0.00 0.00 2.69
2494 2555 6.096846 GGAAGAAAATGCAGGGATTAGCTTAA 59.903 38.462 0.00 0.00 0.00 1.85
2495 2556 5.594317 GGAAGAAAATGCAGGGATTAGCTTA 59.406 40.000 0.00 0.00 0.00 3.09
2567 2628 5.756347 GGTTATATACACCTGCGAAATGTCA 59.244 40.000 0.00 0.00 0.00 3.58
2725 2788 5.413833 CACTCAATGAAGCAACTAGGTCATT 59.586 40.000 0.00 0.00 0.00 2.57
2729 2792 4.357918 ACACTCAATGAAGCAACTAGGT 57.642 40.909 0.00 0.00 0.00 3.08
2756 2819 1.552337 CAGCTCTCCAGAAACTGCCTA 59.448 52.381 0.00 0.00 0.00 3.93
2849 2995 8.781196 AGCTCAAATATTGTCATAGTAAGCATG 58.219 33.333 0.00 0.00 30.09 4.06
2857 3003 6.199154 ACGTCGAAGCTCAAATATTGTCATAG 59.801 38.462 0.00 0.00 0.00 2.23
2870 3016 2.030274 TCTTGATTCACGTCGAAGCTCA 60.030 45.455 14.08 8.05 40.79 4.26
2883 3029 9.421806 CAGTATCATCAATAGAGGTCTTGATTC 57.578 37.037 0.00 0.00 39.47 2.52
3153 3299 3.795150 GCTCAAACTCGGCAAAATCAACA 60.795 43.478 0.00 0.00 0.00 3.33
3378 3524 1.400846 CATGCTCTGATGCAGTTCACC 59.599 52.381 0.00 0.00 46.71 4.02
3661 3844 7.542130 CCATATGTAGTTTCTTGAAACTTTGCC 59.458 37.037 26.86 15.94 42.48 4.52
3662 3845 7.062255 GCCATATGTAGTTTCTTGAAACTTTGC 59.938 37.037 26.86 19.06 42.48 3.68
3690 3873 6.266558 AGTGTAGTTTTCCATATGTTTTGCCA 59.733 34.615 1.24 0.00 0.00 4.92
3724 3907 4.514066 AGGTCACATTTTGTTACGGAGTTC 59.486 41.667 0.00 0.00 37.78 3.01
3730 3913 7.148733 CAAAAAGAGGTCACATTTTGTTACG 57.851 36.000 0.00 0.00 37.75 3.18
3754 3939 0.663153 GGGAAATGCTATCGTGGCAC 59.337 55.000 7.79 7.79 42.69 5.01
3764 3949 2.785269 TCCATCCATGTAGGGAAATGCT 59.215 45.455 0.00 0.00 41.12 3.79
3765 3950 3.152341 CTCCATCCATGTAGGGAAATGC 58.848 50.000 0.00 0.00 41.12 3.56
3827 4013 0.611714 GACCGGCTTCTGGAAAGGTA 59.388 55.000 0.00 0.00 31.35 3.08
3833 4025 1.403814 CATAGAGACCGGCTTCTGGA 58.596 55.000 16.36 0.52 0.00 3.86
3855 4047 3.480133 CCTAGGGGGCCAGAACGG 61.480 72.222 4.39 0.00 38.11 4.44
3856 4048 2.687566 ACCTAGGGGGCCAGAACG 60.688 66.667 14.81 0.00 39.10 3.95
3857 4049 2.732619 CGACCTAGGGGGCCAGAAC 61.733 68.421 14.81 0.00 37.32 3.01
3858 4050 2.365105 CGACCTAGGGGGCCAGAA 60.365 66.667 14.81 0.00 37.32 3.02
3859 4051 4.475444 CCGACCTAGGGGGCCAGA 62.475 72.222 14.81 0.00 37.32 3.86
3860 4052 2.884179 TAACCGACCTAGGGGGCCAG 62.884 65.000 14.81 0.00 37.32 4.85
3861 4053 2.945904 TAACCGACCTAGGGGGCCA 61.946 63.158 14.81 2.65 37.32 5.36
3862 4054 2.041612 TAACCGACCTAGGGGGCC 60.042 66.667 14.81 0.00 37.32 5.80
3863 4055 2.789715 CGTAACCGACCTAGGGGGC 61.790 68.421 14.81 0.84 39.10 5.80
3888 4080 0.686112 CCATGGCCGGGTTAATTGGT 60.686 55.000 2.18 0.00 0.00 3.67
3917 4109 0.254747 CAAGCCTTCCGGGACCATAA 59.745 55.000 0.00 0.00 37.23 1.90
3942 4135 2.093341 GGATGCCGGTTACCTTGTCTTA 60.093 50.000 1.90 0.00 0.00 2.10
3960 4153 4.030913 TGGTTAAGAGGAGTCATTCGGAT 58.969 43.478 0.00 0.00 0.00 4.18
3988 4181 2.159382 CCGGTTGCCTTGTCTTGTATT 58.841 47.619 0.00 0.00 0.00 1.89
3989 4182 1.821216 CCGGTTGCCTTGTCTTGTAT 58.179 50.000 0.00 0.00 0.00 2.29
3990 4183 0.887387 GCCGGTTGCCTTGTCTTGTA 60.887 55.000 1.90 0.00 0.00 2.41
3991 4184 2.193536 GCCGGTTGCCTTGTCTTGT 61.194 57.895 1.90 0.00 0.00 3.16
3992 4185 1.526575 ATGCCGGTTGCCTTGTCTTG 61.527 55.000 1.90 0.00 40.16 3.02
3993 4186 1.228552 ATGCCGGTTGCCTTGTCTT 60.229 52.632 1.90 0.00 40.16 3.01
3994 4187 1.675641 GATGCCGGTTGCCTTGTCT 60.676 57.895 1.90 0.00 40.16 3.41
3995 4188 1.675641 AGATGCCGGTTGCCTTGTC 60.676 57.895 1.90 0.00 40.16 3.18
3996 4189 1.973281 CAGATGCCGGTTGCCTTGT 60.973 57.895 1.90 0.00 40.16 3.16
3997 4190 1.243342 TTCAGATGCCGGTTGCCTTG 61.243 55.000 1.90 0.00 40.16 3.61
3998 4191 0.323725 ATTCAGATGCCGGTTGCCTT 60.324 50.000 1.90 0.00 40.16 4.35
3999 4192 1.033746 CATTCAGATGCCGGTTGCCT 61.034 55.000 1.90 0.00 40.16 4.75
4000 4193 1.031571 TCATTCAGATGCCGGTTGCC 61.032 55.000 1.90 0.00 40.16 4.52
4001 4194 0.099436 GTCATTCAGATGCCGGTTGC 59.901 55.000 1.90 0.00 41.77 4.17
4002 4195 1.667724 GAGTCATTCAGATGCCGGTTG 59.332 52.381 1.90 0.00 33.14 3.77
4003 4196 1.407437 GGAGTCATTCAGATGCCGGTT 60.407 52.381 1.90 0.00 33.14 4.44
4004 4197 0.179000 GGAGTCATTCAGATGCCGGT 59.821 55.000 1.90 0.00 33.14 5.28
4005 4198 0.467384 AGGAGTCATTCAGATGCCGG 59.533 55.000 0.00 0.00 33.14 6.13
4006 4199 1.411977 AGAGGAGTCATTCAGATGCCG 59.588 52.381 0.00 0.00 33.14 5.69
4007 4200 3.557228 AAGAGGAGTCATTCAGATGCC 57.443 47.619 0.00 0.00 33.14 4.40
4008 4201 4.813697 GGTTAAGAGGAGTCATTCAGATGC 59.186 45.833 0.00 0.00 33.14 3.91
4009 4202 5.982356 TGGTTAAGAGGAGTCATTCAGATG 58.018 41.667 0.00 0.00 34.46 2.90
4010 4203 6.214412 AGTTGGTTAAGAGGAGTCATTCAGAT 59.786 38.462 0.00 0.00 0.00 2.90
4011 4204 5.544176 AGTTGGTTAAGAGGAGTCATTCAGA 59.456 40.000 0.00 0.00 0.00 3.27
4012 4205 5.799213 AGTTGGTTAAGAGGAGTCATTCAG 58.201 41.667 0.00 0.00 0.00 3.02
4013 4206 5.825593 AGTTGGTTAAGAGGAGTCATTCA 57.174 39.130 0.00 0.00 0.00 2.57
4014 4207 7.612677 TCTAAGTTGGTTAAGAGGAGTCATTC 58.387 38.462 0.00 0.00 0.00 2.67
4015 4208 7.554959 TCTAAGTTGGTTAAGAGGAGTCATT 57.445 36.000 0.00 0.00 0.00 2.57
4016 4209 7.016268 TGTTCTAAGTTGGTTAAGAGGAGTCAT 59.984 37.037 0.00 0.00 0.00 3.06
4017 4210 6.325545 TGTTCTAAGTTGGTTAAGAGGAGTCA 59.674 38.462 0.00 0.00 0.00 3.41
4018 4211 6.756221 TGTTCTAAGTTGGTTAAGAGGAGTC 58.244 40.000 0.00 0.00 0.00 3.36
4019 4212 6.742559 TGTTCTAAGTTGGTTAAGAGGAGT 57.257 37.500 0.00 0.00 0.00 3.85
4020 4213 7.386851 TCATGTTCTAAGTTGGTTAAGAGGAG 58.613 38.462 0.00 0.00 0.00 3.69
4021 4214 7.311092 TCATGTTCTAAGTTGGTTAAGAGGA 57.689 36.000 0.00 0.00 0.00 3.71
4022 4215 7.979444 TTCATGTTCTAAGTTGGTTAAGAGG 57.021 36.000 0.00 0.00 0.00 3.69
4023 4216 8.836413 TGTTTCATGTTCTAAGTTGGTTAAGAG 58.164 33.333 0.00 0.00 0.00 2.85
4024 4217 8.617809 GTGTTTCATGTTCTAAGTTGGTTAAGA 58.382 33.333 0.00 0.00 0.00 2.10
4025 4218 8.621286 AGTGTTTCATGTTCTAAGTTGGTTAAG 58.379 33.333 0.00 0.00 0.00 1.85
4026 4219 8.514330 AGTGTTTCATGTTCTAAGTTGGTTAA 57.486 30.769 0.00 0.00 0.00 2.01
4027 4220 9.268268 CTAGTGTTTCATGTTCTAAGTTGGTTA 57.732 33.333 0.00 0.00 0.00 2.85
4028 4221 7.990886 TCTAGTGTTTCATGTTCTAAGTTGGTT 59.009 33.333 0.00 0.00 0.00 3.67
4029 4222 7.441458 GTCTAGTGTTTCATGTTCTAAGTTGGT 59.559 37.037 0.00 0.00 0.00 3.67
4030 4223 7.441157 TGTCTAGTGTTTCATGTTCTAAGTTGG 59.559 37.037 0.00 0.00 0.00 3.77
4031 4224 8.276325 GTGTCTAGTGTTTCATGTTCTAAGTTG 58.724 37.037 0.00 0.00 0.00 3.16
4032 4225 8.204836 AGTGTCTAGTGTTTCATGTTCTAAGTT 58.795 33.333 0.00 0.00 0.00 2.66
4033 4226 7.653713 CAGTGTCTAGTGTTTCATGTTCTAAGT 59.346 37.037 0.00 0.00 0.00 2.24
4034 4227 7.116948 CCAGTGTCTAGTGTTTCATGTTCTAAG 59.883 40.741 0.00 0.00 0.00 2.18
4035 4228 6.929049 CCAGTGTCTAGTGTTTCATGTTCTAA 59.071 38.462 0.00 0.00 0.00 2.10
4036 4229 6.455647 CCAGTGTCTAGTGTTTCATGTTCTA 58.544 40.000 0.00 0.00 0.00 2.10
4037 4230 5.300752 CCAGTGTCTAGTGTTTCATGTTCT 58.699 41.667 0.00 0.00 0.00 3.01
4045 4238 1.202770 GGGTGCCAGTGTCTAGTGTTT 60.203 52.381 0.00 0.00 0.00 2.83
4058 4251 1.680651 CGGCTTTTATGGGGTGCCA 60.681 57.895 0.00 0.00 43.38 4.92
4087 4280 4.148891 CAAACGAAAAAGTCTATGCGACC 58.851 43.478 0.00 0.00 43.91 4.79
4100 4293 6.963083 TTATCCTCCTTTTCCAAACGAAAA 57.037 33.333 0.00 0.00 46.01 2.29
4101 4294 6.239092 GGTTTATCCTCCTTTTCCAAACGAAA 60.239 38.462 0.00 0.00 38.74 3.46
4102 4295 5.242171 GGTTTATCCTCCTTTTCCAAACGAA 59.758 40.000 0.00 0.00 0.00 3.85
4103 4296 4.763279 GGTTTATCCTCCTTTTCCAAACGA 59.237 41.667 0.00 0.00 0.00 3.85
4104 4297 4.082408 GGGTTTATCCTCCTTTTCCAAACG 60.082 45.833 0.00 0.00 36.25 3.60
4105 4298 4.222145 GGGGTTTATCCTCCTTTTCCAAAC 59.778 45.833 0.00 0.00 36.25 2.93
4106 4299 4.422057 GGGGTTTATCCTCCTTTTCCAAA 58.578 43.478 0.00 0.00 36.25 3.28
4107 4300 4.055710 GGGGTTTATCCTCCTTTTCCAA 57.944 45.455 0.00 0.00 36.25 3.53
4108 4301 3.750501 GGGGTTTATCCTCCTTTTCCA 57.249 47.619 0.00 0.00 36.25 3.53
4116 4309 0.474614 GAGGCTGGGGGTTTATCCTC 59.525 60.000 0.00 0.00 36.25 3.71
4117 4310 0.046397 AGAGGCTGGGGGTTTATCCT 59.954 55.000 0.00 0.00 36.25 3.24
4118 4311 0.183731 CAGAGGCTGGGGGTTTATCC 59.816 60.000 0.00 0.00 0.00 2.59
4119 4312 0.466372 GCAGAGGCTGGGGGTTTATC 60.466 60.000 0.00 0.00 36.96 1.75
4120 4313 1.214305 TGCAGAGGCTGGGGGTTTAT 61.214 55.000 0.00 0.00 41.91 1.40
4121 4314 1.214305 ATGCAGAGGCTGGGGGTTTA 61.214 55.000 0.00 0.00 41.91 2.01
4122 4315 2.505364 GATGCAGAGGCTGGGGGTTT 62.505 60.000 0.00 0.00 41.91 3.27
4123 4316 2.943265 ATGCAGAGGCTGGGGGTT 60.943 61.111 0.00 0.00 41.91 4.11
4124 4317 2.551856 TAGATGCAGAGGCTGGGGGT 62.552 60.000 0.00 0.00 41.91 4.95
4125 4318 1.766625 CTAGATGCAGAGGCTGGGGG 61.767 65.000 0.00 0.00 41.91 5.40
4126 4319 0.762082 TCTAGATGCAGAGGCTGGGG 60.762 60.000 0.00 0.00 41.91 4.96
4127 4320 0.392336 GTCTAGATGCAGAGGCTGGG 59.608 60.000 0.00 0.00 41.91 4.45
4128 4321 0.031857 CGTCTAGATGCAGAGGCTGG 59.968 60.000 0.00 0.00 41.91 4.85
4129 4322 1.028130 TCGTCTAGATGCAGAGGCTG 58.972 55.000 7.11 0.00 41.91 4.85
4130 4323 1.993956 ATCGTCTAGATGCAGAGGCT 58.006 50.000 7.11 0.00 41.91 4.58
4139 4332 0.668706 GCCGCATGCATCGTCTAGAT 60.669 55.000 19.57 0.00 41.01 1.98
4140 4333 1.300156 GCCGCATGCATCGTCTAGA 60.300 57.895 19.57 0.00 40.77 2.43
4141 4334 2.313172 GGCCGCATGCATCGTCTAG 61.313 63.158 19.57 0.00 43.89 2.43
4142 4335 2.280119 GGCCGCATGCATCGTCTA 60.280 61.111 19.57 0.00 43.89 2.59
4143 4336 3.762429 ATGGCCGCATGCATCGTCT 62.762 57.895 19.57 0.00 43.89 4.18
4144 4337 3.245948 GATGGCCGCATGCATCGTC 62.246 63.158 19.57 12.62 43.89 4.20
4145 4338 3.282157 GATGGCCGCATGCATCGT 61.282 61.111 19.57 7.41 43.89 3.73
4146 4339 1.229975 TAAGATGGCCGCATGCATCG 61.230 55.000 19.57 5.23 43.89 3.84
4147 4340 0.953727 TTAAGATGGCCGCATGCATC 59.046 50.000 19.57 12.80 43.89 3.91
4148 4341 1.624336 ATTAAGATGGCCGCATGCAT 58.376 45.000 19.57 2.77 43.89 3.96
4149 4342 2.268762 TATTAAGATGGCCGCATGCA 57.731 45.000 19.57 0.00 43.89 3.96
4150 4343 3.855689 ATTATTAAGATGGCCGCATGC 57.144 42.857 7.91 7.91 40.16 4.06
4151 4344 7.537715 TGAATAATTATTAAGATGGCCGCATG 58.462 34.615 10.68 0.00 0.00 4.06
4152 4345 7.701539 TGAATAATTATTAAGATGGCCGCAT 57.298 32.000 10.68 0.00 0.00 4.73
4153 4346 7.701539 ATGAATAATTATTAAGATGGCCGCA 57.298 32.000 10.68 1.72 0.00 5.69
4154 4347 9.109393 TCTATGAATAATTATTAAGATGGCCGC 57.891 33.333 10.68 0.00 0.00 6.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.