>input_sequence_36413
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---------------------------------------------------------------------------ATGTC
AGCTCTCAGCAGCAGCTGCTCTGCTCTGCTCTGCTGCATATACACCGCTCCCTCTCCGTTCCCCCGAACTCTTCGCTCCC
GTTCCGCGCTGTCCGTCTCACACAGGATGGCGTCCGCCATGGAGCTCTCCCTCCTCAACCCCGCAATGCACCACCACGGC
ATCGCGGCCAAGACGGCCTCCCACCTCCCTGTTCTCCCCGCGCGCCGGGGCGCCGTCCGCTTCCGCGTGAGGGCCGCCGC
CGCGGCGCCGCCTGCACCCGCCGCGAAGCCCGGCTCGCCCAAGAAGCGGGGCAAGACGGAGGTCAACGAGTCGCTGCTCA
CGCCGCGCTTCTACACCACGGACTTCGACGAGATGGAGCAGCTGTTCAACGCCGAGATTAACAAGCAGCTCAACCAGGAC
GAGTTCGACGCGCTGCTGCAGGAGTTCAAGACGGACTACAACCAGACCCACTTCATCCGCAACCCCGAGTTCAAGGAGGC
CGCCGACAAGATGCAGGGCCCGCTCCGCCAGATCTTCGTCGAGTTCCTCGAGCGCTCCTGCACCGCCGAGTTCTCCGGGT
TCCTCCTCTACAAGGAGCTCGGCCGCAGGCTCAAGGTTCGTGTACCA---CTTCTTCTTCTTCTCTGCTCTTGCATGTGG
GCATTTCGTCGAGCAGCTGGTGGGTGTGCGCTGATGCCCGCGTTTCCTTTTTCAGAAAACCAACCCGGTGGTGGCTGAGA
TCTTCTCGCTCATGTCCAGGGACGAGGCCAGGCACGCTGGGTATG---TAA----TTCCGCTCTTATTCCCATCAATACA
ACGCAATACAATACAATTCGATTGGGCGTAGT-------CAGAACCCAAATGCATTGACTATGACCAGAAATGCCTTCTT
CTCTCATGTAAAAAGTTTAAGCTTCAACTCAATTTCGCAAGAATTATCAACTATTCATCCGTTCCTAAATATAAGTCTTT
GAAGAGATTTCACTATGGACTATATACGGAACAAAATTAGTGAATCATACTCTAAAATGCATCTATATACATCCGTATGT
GGTCCATAGTGGAATCTCTACAAAGACTTATATTTAGGAACGGAGGGAGTATTAACTACTACTACTAGTACTGTAGTTC-
-------AGTTCTCAGCATGATTTGTGTTATTCATAAAGAAACATGATTCGTGCTGTGTAGGTTCTTGAACAAGGGGCTG
TCCGATTTCAACCTGGCTCTGGACCTCGGCTTCTTGACCAAGGCTAGGAAGTACACCTTCTTCAAGCCAAAGTTCATCTT
CTACGCCACGTACCTGTCCGAGAAGATCGGCTACTGGAGGTACATCACCATCTTCAGGCACCTCAAGGCCAACCCGGAGT
ACCAGGTGTACCCCATCTTCAAGTACTTCGAGAACTGGTGCCAGGACGAGAACCGGCACGGCGATTTCTTCTCCGCGCTG
CTCAAGGCGCAGCCGCAGTTCCTCAATGACTGGAAGGCCAAGCTCTGGTCACGCTTCTTCTGCCTCTCGGTAAATTAAGC
TAATCCCTGCATTTTCTTCCATGGGAGTTTGCCATGTCCCTCTTTCTAACAGCTGCGTGCAATTGGATGACATTTCGCAG
GTGTATATAACCATGTACCTGAATGACTGCCAACGTAGTGCCTTCTACGAAGGAATTGGTCTCAACACCAAAGAATTCGA
CATGCATGTCATCTATGAGGTAAAATGAAGTGGCTTTT-CCTGTTTGTATACTCAATTATGA-CATGAATGACCTAGTTG
CTTCATTGAGTGTTTTATTAGGCAGTTTCTGGAGAGCTGCTCAACATGACAATAATGACCTTTCGTACAATAAACATCAC
CCCTATGAAGCATTATACTCTA----------------------------------------------------------
-------------------------GTTTATTTACATGCTTACTATGACAATATTTGAGCTTCGACGTGAATCAAGACCT
CTATTGATGATACTGTTGGTGCATATCTCTGCAGACCAACCGCACGACGGCGAGGATCTTCCCTGCTGTACCGGATGTTG
AGAACCCTGAATTCAAGAGGAAGCTAGACAGGATGGTAGATATCAACCTGAAGATCATTTCTATAGGAGAGTCCAACGAC
ATGCCCCTGGTGAAGAACCTGAAGAGGGTTCCTCTTATTGCCCAACTAGTGTCTGAGATCATCGCTGCGTACCTCATGCC
CCCAATCGAGTCTGGCTCTGTTGATTTTGCCGAGTTTGAGCCCAAGCTTGTCTACTGA----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------
>chr3D_1_TraesCS3D01G194300
CAAGTGTTGGTTGCTCACAACATATGGAAAGTAGCCATCTATTGTACTGTTTGTCTTGATTCATACATATACATCCAAGC
AAGTAAATAGGCAACAGAATGCTAGTATTGCCTAACAAGCTATGTGGTGCAAACGACGAGGTAGGGACCTTCCCTATAGT
TTTTTCGTTCAAAGAAAAACTATGTGGTCCAAATGAGGTTTCTCACATTTATTTTTCGACCATGTCAGTGGAAACTTTTG
ATCATTTCTTTTTGTGAAGTGGATTTCGCTATTGATAATTCATGGCCAGATACTTGTCGCATCATGGCCAATGTTCCCAA
TGGTTTTAAAAGAAGGAGAAAAGCAACACCACCACCATCACCACTAATTTCCCTTCGCATACATTCACGAGCTAAAAAGA
CAGTAATCGATTTGTCCATAAAAGAAAATTGCGCGCCTCTTGTTCATTTCTTTTCAATTATATTACCCCGCTGACTATAA
ACTATGTAGCTTCGTATATTC-AACGTTAACTAGGTGCCTCGTGGTTCGATTGCAACTAAAAAGATACTCTGTTTCCTCG
TAAGAAAACCAAATACTAGCATATCTTTTTAGCCATTAAGATGTTACACTATATTTAGGTCACGGGAATGTCCATCTAGT
TGGTTAACAAGAAATTGATTGCATATAGTCAATCGGTTTTCACCTCAAACCATGGTTAG-AGGTCATAATTTAGTACATG
TTGCTTTGTTCTTCCGTGGA-TTTTACCCTAGTTTAATCACATGCGGCTGCTCTCCTTTTGTGTGTAAATAAACAATGAT
ACCAACTCTGAAACAACAATAATAAGCAAAGCAAAAGGGCCTTGCAAGAAGAAGAAGATATATAATTCCTT---------
-------------------AAATAAAGAGAATGATGAAAAAAGGTGAGATGGGCGTGTGGTT--AGATTGGCCTGCTGTA
CACATGGCGCGCGCCCATTTGAAGCCGAAGATTACACCTCATCACCGCCTTATCGCACCAC--CCTATCTCTTACATGTC
AGCTCTCAGCAGCAGCTGCTCTGCTCTGCTCTGCTGCATATACACCGCTCCCTCTCCGTTCCCCCGAACTCTTCGCTCCC
GTTCCGCGCTGTCCGTCTCACACAGGATGGCGTCCGCCATGGAGCTCTCCCTCCTCAACCCCGCAATGCACCACCACGGC
ATCGCGGCCAAGACGGCCTCCCACCTCCCTGTTCTCCCCGCGCGCCGGGGCGCCGTCCGCTTCCGCGTGAGGGCCGCCGC
CGCGGCGCCGCCTGCACCCGCCGCGAAGCCCGGCTCGCCCAAGAAGCGGGGCAAGACGGAGGTCAACGAGTCGCTGCTCA
CGCCGCGCTTCTACACCACGGACTTCGACGAGATGGAGCAGCTGTTCAACGCCGAGATTAACAAGCAGCTCAACCAGGAC
GAGTTCGACGCGCTGCTGCAGGAGTTCAAGACGGACTACAACCAGACCCACTTCATCCGCAACCCCGAGTTCAAGGAGGC
CGCCGACAAGATGCAGGGCCCGCTCCGCCAGATCTTCGTCGAGTTCCTCGAGCGCTCCTGCACCGCCGAGTTCTCCGGGT
TCCTCCTCTACAAGGAGCTCGGCCGCAGGCTCAAGGTTCGTGTACCA---CTTCTTCTTCTTCTCTGCTCTTGCATGTGG
GCATTTCGTCGAGCAGCTGGTGGGTGTGCGCTGATGCCCGCGTTTCCTTTTTCAGAAAACCAACCCGGTGGTGGCTGAGA
TCTTCTCGCTCATGTCCAGGGACGAGGCCAGGCACGCTGGGTATG---TAA----TTCCGCTCTTATTCCCATCAATACA
ACGCAATACAATACAATTCGATTGGGCGTAGT-------CAGAACCCAAATGCATTGACTATGACCAGAAATGCCTTCTT
CTCTCATGTAAAAAGTTTAAGCTTCAACTCAATTTCGCAAGAATTATCAACTATTCATCCGTTCCTAAATATAAGTCTTT
GAAGAGATTTCACTATGGACTATATACGGAACAAAATTAGTGAATCATACTCTAAAATGCATCTATATACATCCGTATGT
GGTCCATAGTGGAATCTCTACAAAGACTTATATTTAGGAACGGAGGGAGTATTAACTACTACTACTAGTACTGTAGTTC-
-------AGTTCTCAGCATGATTTGTGTTATTCATAAAGAAACATGATTCGTGCTGTGTAGGTTCTTGAACAAGGGGCTG
TCCGATTTCAACCTGGCTCTGGACCTCGGCTTCTTGACCAAGGCTAGGAAGTACACCTTCTTCAAGCCAAAGTTCATCTT
CTACGCCACGTACCTGTCCGAGAAGATCGGCTACTGGAGGTACATCACCATCTTCAGGCACCTCAAGGCCAACCCGGAGT
ACCAGGTGTACCCCATCTTCAAGTACTTCGAGAACTGGTGCCAGGACGAGAACCGGCACGGCGATTTCTTCTCCGCGCTG
CTCAAGGCGCAGCCGCAGTTCCTCAATGACTGGAAGGCCAAGCTCTGGTCACGCTTCTTCTGCCTCTCGGTAAATTAAGC
TAATCCCTGCATTTTCTTCCATGGGAGTTTGCCATGTCCCTCTTTCTAACAGCTGCGTGCAATTGGATGACATTTCGCAG
GTGTATATAACCATGTACCTGAATGACTGCCAACGTAGTGCCTTCTACGAAGGAATTGGTCTCAACACCAAAGAATTCGA
CATGCATGTCATCTATGAGGTAAAATGAAGTGGCTTTT-CCTGTTTGTATACTCAATTATGA-CATGAATGACCTAGTTG
CTTCATTGAGTGTTTTATTAGGCAGTTTCTGGAGAGCTGCTCAACATGACAATAATGACCTTTCGTACAATAAACATCAC
CCCTATGAAGCATTATACTCTA----------------------------------------------------------
-------------------------GTTTATTTACATGCTTACTATGACAATATTTGAGCTTCGACGTGAATCAAGACCT
CTATTGATGATACTGTTGGTGCATATCTCTGCAGACCAACCGCACGACGGCGAGGATCTTCCCTGCTGTACCGGATGTTG
AGAACCCTGAATTCAAGAGGAAGCTAGACAGGATGGTAGATATCAACCTGAAGATCATTTCTATAGGAGAGTCCAACGAC
ATGCCCCTGGTGAAGAACCTGAAGAGGGTTCCTCTTATTGCCCAACTAGTGTCTGAGATCATCGCTGCGTACCTCATGCC
CCCAATCGAGTCTGGCTCTGTTGATTTTGCCGAGTTTGAGCCCAAGCTTGTCTACTGAATTTGTAGAAAAAGGATCCATC
TCTGCCTTTCTTTTCAGACATAATCATGCATCATGCTCCTGGAGAGTCTCTGAATGAGCACATGATCCATGGTTAATTAA
CAGGATCTACATCCTCCTGTGCTCATCTGTAAAGTATTAAAACTCGGCAAGTTTTTGCTTAGTCACATCAACATGTAAGT
GGCGGTGAACTGCATCAGAGCATGTGTTCCGGTTTTGCTTCAGGTGGAGAAGCATATCTGAAGTTGTTATGTAACTTGTG
TCGATACTTGATTAAATAGCAATATAGCATCCGATTTTGTAGACATGTTATGTATCACACATGGCATGT-----------
--------------------------TGTTAGGTCAACAACGGCATTGACATTTTATTACCGTAAACGTATGCACAAAAT
TAAAGAGTAAAAAAAAGAAATTAAAGAGTAAAATTCATGAAAGTGCATCTATTTGTACAAAATATCACAAAACGATGCCC
TTAGGCAAAGTTTCAAGAAACTACATATGGCTTGGCAAAACATATGGAAAACTACACTTTTATGTGGAACTCCGT--AAC
AAAATGTGACCTCTTTTTGTGCCACGATAGCATTTCCCTACATGGATGGAGTGTGGTTAACATTGTGA-GTTGTTATGAC
CCAGGGGTGTCTT------ACCTTTCCAGAAGCCGGTCTCTATGGGCCGTTCTGGCCCCCTAGGTCGGTTACGCAATGGA
CCAATTAACCCGGCCATGGCCCCACGACTT-ATGGTCCCGGAAGGCTTGAAGTATAAGACAAGGTAACCGGCATCCGAAT
GACTCCTCTTAACCAACTTAAATACAAGACAAGGCAACCGGCATCTGAATGACTCCTCTTAACCAACTTAGAACATGAAA
CACTAGACACTGGCACCCCATAAAAGCCGGGGCTAGGCTGGTCGCATAGACTTTTTCGTTTGGAAAAGGAGGATAAACCC
CCAGCCTCTGCATCTAGACGATGCATGCGGCCATCTTAATAATTATTCATAGAGACCATACACAG
>chr3A_21
--------------------CATATGACAAGTAGTCATCTATTGTATTGTTTGTCTTGATCCATACATACACATCCAAGC
AAGTAAATAGGCAACAAAATGCTAGTATTGCCTAACAAGCTATGTGGTGCAAACGACGCGGTAGGGACCTTCCCTACAAT
TTTTTCGTTCAAAGAAAAACTATGTGGTCCAAATGAGGTTTCTCACATTTATTTTTCGACCATGTCAATGAAAACTTTTG
TTCATTT-TTTTTGTGAAGTGCAGTCCGCTATTGATAATTCATGGCCAAATACTTGTCGCATCATGGCCAATGTTCACAA
TGGTTTTAAAAGAAGGAGAAAAGCAACACCACCACCATCACCACTAATTTCCCTTCGCATACATTCACGAGCTAAAAATA
TAGTAATCAATTTGTCCATAAAAGAAACTTGCGCACCTCTCGTCCATTTGTTTTCACTTATATTACCCCGCTGACTACAA
ACTATGTAGCTTCGTATATTCAAACGTTAACCAGGTGCCTCGTGGTTCGATAGCAACTAAAAATATACTTTGTTTCCTCG
TAAGAAAACCAAA---TAGCATATCTTTTTAGCCATCAAGATGTTACACTATATTTACGTCACGGGAATGTCCATCCAGT
TGGTTAACAAGAAATTGATTGCATATACCCAGTCGGTTTTCACCTCAATCCATGGCTAGAAAGTCAGAATTTAGTACATG
TTGCTTTGTTCTTCTGTGGA-TTTTACCCTAGTTTAATCACATGCGGCTCTCC----TTTGTGTGTAAATAAACAATGGC
ACCAACTCTGAAACAAC---AATAAGCAAAGTACAAGGGCCTTGCAAGAATAAGAAGGAAA--------TT---------
-------------------AAATAAAGAGAATGATGAAAAGAGGTGAGATGGGCGTGTGGTTAGAGATTGGCCTGCTGTA
CACATGGCGCGCGCCCATTTGAAGCCGAAGATTACACCTCATCGCCGCCTTATCGCACCACACCCTATCTCTTACATGTC
AGCTCTCAGCAGCAGCTGCTCTGCTCTGCTCTGCTGCATATACAGCGCTCCCTCTCCGTTCCCCCGAACTCTTCGCTCCC
GTTCCGCGCTGTCCGTCACACACAGGATGGCGTCCGCCATGGAGCTCTCCCTCCTCAACCCCGCAATGCACCACCACGGC
ATCGCGGCCAAGACGGCCTCCCCCCTCCCGGTTCTCCCCGCGCGCCGGGGCGCCGTCCGCTTCCGCGTGAGGGCCGCCGC
CGCGGCGCCGCCCGCACCCGCCGCGAAGCCCGGCTCGCCCAAGAAGCGGGGCAAGACGGAGGTCAACGAGTCGCTGCTCA
CGCCGCGCTTCTACACCACGGACTTCGACGAGATGGAGCAGCTATTCAACGCCGAGATTAACAAGCAGCTCAACCAGGAC
GAGTTCGACGCGCTGCTGCAGGAGTTCAAGACGGACTACAACCAGACCCACTTCATCCGCAACCCCGAGTTCAAGGAAGC
TGCCGACAAGATGCAGGGCCCGCTCCGCCAGATCTTCGTCGAGTTCCTCGAGCGCTCCTGCACCGCCGAGTTCTCCGGGT
TCCTCCTCTACAAGGAGCTCGGCCGCAGGCTCAAGGTTCGTGTACCACTTCTTCTTCTTCTTCTCTGCTCTTGCATGTGG
GCATTTCGTAGAGCAGCTGGTGGGTGTGCGCTGATGCCCGCGTTTCCTTT-TCAGAAAACCAACCCGGTGGTGGCTGAGA
TCTTCTCGCTCATGTCCAGGGACGAGGCCCGGCACGCTGGGTATGGAGTACTTGCTTGCACTCTTATTCCCATCAAAACA
AA----------ACAATTCGATCGGGCGTAGCCACTAACCAGAAGCCAAATGCATTGACTATGACCAGAAATGCCTTCTT
CCCTCATGTAAAAAGTTTAAGCTTCAACTCAATTTCGAAAGAATTATCAACTATTA------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------ACTACTAGTACTGTAGTTTA
CTACTCTAGTTCTCAGCATGATTTGTGTTATTCATCAAGAAACATGATTCGTGCTGTGTAGGTTCTTGAACAAGGGGCTG
TCCGACTTCAACCTGGCTCTGGACCTCGGCTTCTTGACCAAGGCTAGGAAGTACACCTTCTTCAAGCCAAAGTTCATCTT
CTACGCCACATACCTGTCCGAGAAGATCGGCTACTGGAGGTACATCACCATCTTCAGGCACCTAAAGGCCAACCCGGAGT
ACCAGGTGTACCCCATCTTCAAGTACTTCGAGAACTGGTGTCAGGACGAGAACCGGCATGGCGATTTCTTCTCCGCGCTG
CTCAAGGCGCAGCCGCAGTTCCTCAATGACTGGAAGGCCAAGCTCTGGTCACGCTTCTTCTGCCTCTCGGTAAAGCAAGC
TAATCCCTGCATTTTCTTCGATGGGAGTTTGCCATGTCCCTCTTTCTAACAGCTGCGTGCAATTGGACGACATTTCGCAG
GTGTATATAACCATGTACCTGAATGACTGCCAACGTAGTGCCTTCTACGAAGGAATTGGTCTCAACACCAAAGAATTCGA
CATGCATGTCATCTATGAGGTAAAATGAAGTGACTTTT-CCTGTTTGTATACTCAATTAATGGCATGCATGCCCTAGTTG
CTTCATTGAGTGTTTTATCAGGCGGTTTCTGGAGAGCTGCTCAACATGACAATAATGACCTTTCGTACAATAAACATCAC
CCCTATGAAGCATTATACTCTACTCCCTCTGTCCCATAATATAAAAGTGTTTTTGACACTACATTAATATCAAAAACATT
CTTGTATTATGGGACGGCGGGAGTAGTTTATTTATATGCTTATTATGACAATATTAGAGCTTCGACGTAAATCAAGACCT
CTATTGATGATACTGTTGGTGCATATCTCTGCAGACAAACCGCACGACGGCGAGGATCTTCCCTGCTGTACCGGATGTTG
AGAACCCTGAATTCAAGAGGAAGCTAGACAGGATGGTAGATATCAACCTGAAGATCATTTCTATAGGAGAGTCCAACGAC
ATGCCCCTGGTGAAGAACCTGAAGAGGGTTCCTCTTATTGCCCAACTAGTGTCTGAGATCATCGCTGCGTACCTCATGCC
CCCAATCGAGTCTGGCTCCGTTGATTTTGCCGAGTTTGAGCCCAAGCTTGTCTACTGAATTTGTAGAAGAAGGATCCATC
TATGCCTTTCTTTTCAGACATAATCATGCATCATGCTCCTCGAGAGTCTCTGAATGAGCACATGATCCATGGTTAATTAA
CAGGATCTACATCCTCCTGTGCTCATCTGTAAAGTATTAAAACTCGGCAAGTTTTTGCTTAGTCACATCAACATGTAAGT
GGCAGTGAACTGCATCAGAGCATGTGTTCCGGTTTTGCTTCAGGTGGAGAAGCATATCTGAAGTTGTTATGTAACTTGTG
TCGATACTTGATTAAATAGCAATATAGCATCCGATTTTGTAGATATGTTATGTATCACACATGGCATGTTTGTTAAGTAT
ATGTTATGTATCACACATGGCATGTTTGTTAGGTCAACAACGGCATTGACATTTTGTTACCGTAAATGTATGCAT-----
----------------GAAATTAAAGAGTAAAATTCATGAAACTGCATCTATTTGTACAAAATATCACAAAACGATGCCC
TTACACAAAGTTTCAAGAAACTACATATGGCTAGGCAAAACATATGGAAAACTACACTTTTATGTGCAACTC--T--AAC
AAAATGTGACCTCTTTTTATGCCACGATGTCATTTTCCTACATGGATGGAATGTGGTTAACATTGTGACGCTGTCATGCC
CCAGGGGTGTCTCATTCTCACCTTACCAGAAGCCGGT------------------CCCCCTAGGTCGGTTACGCAATGGG
CCAATCAACCCGGCCATGGCCCCACGGCATAATGGTCCCGGAAGGCTTGAAGTACAAGACAAAGCAACCGGCGTCCGAAT
GGCTCCTCTTAACCAACTTA------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------
>chr3B_134
CGACA---------------------------------------------------------------------------
------------------------------------------------------------GTAGGGACCTTCCCTACAGT
TTTTTCGTTCAAAGAAAAACTATGTGATCCAAATGAGGTTTCTCACATTTATTTTTCAACCACGTCAATGGAAACTTTTG
TTCATTTCTTTTTCTGAAATGCAGTCCGCTATTGATAATTCATGGCCAGATACTTGCCGCATCATGGCCAATGTTTACAA
TGGTTTTAAAAGAAGGAGAAAAGCAACACCACCACCATCACCACTAATTTCCCTTCGCATACATTCACGAGCTAAAAAGA
TAGTAATCGATTTGTCCATAAAAGAAAATTGTGTGCTTCTCGTTTGTTTGTTTTCAGCTATATTACCCCGCTGACTACAT
ACTATGTAGCTTCGTATATTCAAACGTTAACTAGGTGCCTCGTGGTTCGATTGCAACTAAAAAGATACCTTGTTTCCTCG
TAAAAACACAAAA---TAGCATATATTTTTAGCCATCAAGATGTTACACTATATGCAGGTCACGGGAATGTCCATCCAGT
TGGTTAACAAGAAACTGATTGCATATAGCCAATCGGGTTTCACCTCAAACCATGGTTAG-AAGTCATAATTTAGTACATG
TTGCTTTGTTCTTCTGTGGATTTTTACCCTAGTATAATCACACGCGGCTCTCC----TTTGTGTGTAAATAAACAATGAT
ACAAACTCTGAAACAAC---AATAAGCAAAGCAAAAGGGCCTTGCAAGAAAAAGAAGATAA--------TTTTGAATGTG
AAGAAGAAGATATATAATTAAATAAAGAGAATGATGAAAAGTGGTGAGATGGGCGTGTGGTT--AGATTGGCCTGCTGTA
CACATGGCGCGCGCCCATTTGAAGCCGAAGATTACACCTCATCGCCGCCTTATCGCACCAC--CCTATCTCTTGCATGTC
AGCTCTGAGCAGCAGCTGCTCTGCTCTGCTCTGCTGCATATACACGGCTCCCTCTCCATTCCCCCGAACTCTTCGCTCCC
GTTCCGCGGTGTCAGTCATACACAGGATGGCGTCCGCCATGGAGCTCTCCCTCCTCAACCCCGCAATGCACCACCACGGC
ATCGCGGCCAAGACGGCCTCCCACCTCCCGCTTCTCCCCGCGCGCCGGGGCGCCGTCCGCTTCCGCGTGAGGGCCGCCGC
CGCGGCGCCGCCCGCACCCGCCGCGAAGCCCGGCTCGCCCAAGAAGCGGGGCAAGACGGAGGTCAACGAGTCGCTGCTCA
CGCCGCGCTTCTACACCACGGACTTCGACGAGATGGAGCAGCTGTTCAACGCCGAGATTAACAAGCAGCTCAATCAGGAC
GAGTTCGACGCGCTGCTGCAGGAGTTCAAGACGGACTACAACCAGACCCACTTCATCCGCAACCCCGAGTTCAAGGAGGC
CGCCGACAAGATGCAGGGCCCGCTCCGCCAGATCTTCGTCGAGTTCCTCGAGCGCTCCTGCACCGCCGAGTTCTCCGGGT
TCCTCCTCTACAAGGAGCTCGGCCGCAGGCTCAAGGTTCGTGTACCA---CTTCTTCTTCTTCTCTGCTCTTGCATGTGG
GCATTTCGTCGAGCAGCTGGTGGGTGTGCGCTGATGCCAGCGTTTCCTTT-TCAGAAAACCAACCCGGTGGTGGCTGAGA
TCTTCTCGCTCATGTCCAGGGACGAGGCCCGGCACGCTGGGTATG---TACTTGCTTGCGCTCTTACTCCCATCAAAACA
AA----------ACAATTCGATCGGGCGTAACCACTAACCAGAAGCCAAATGCATTGACTATGACCAGAAATGCCTTCTC
CCCTCATGTAAAAAATTTAGGCTTCAACTCAATTTCGCAAGAATTATCAAAACGTT------------------------
--------------------------------------------------------------------------------
--------------------------CTTATATTATGGGACGGAGGGAGTAGTACTGTAGTTGTTCTCAGCATAT-----
-----------------ATGATTTGTGTTATTCATAAAGAAGCATGATTCGTGCTGTGTAGGTTCTTGAACAAGGGGCTG
TCCGACTTCAACCTGGCTCTGGACCTCGGCTTCTTGACCAAGGCTAGGAAGTACACCTTCTTCAAGCCAAAGTTCATCTT
CTACGCCACGTACCTGTCCGAGAAGATCGGCTACTGGAGGTACATCACCATCTTCAGGCACCTCAAGGCCAACCCGGAGT
ACCAGGTGTACCCCATCTTCAAGTACTTCGAGAACTGGTGCCAGGACGAGAACCGGCACGGCGATTTCTTCTCCGCGCTG
CTCAAGGCGCAGCCGCAGTTCCTCAATGACTGGAAGGCCAAGCTCTGGTCACGCTTCTTCTGCCTCTCGGTAAAGCAAGT
TAAT-CCTGCATTTTCTTCGATGGGAGTTTGCCATGTTCCTCTTTCTAACAGCTGCGTGCAATTGGACGACATTTCGCAG
GTGTATATAACCATGTACCTGAATGACTGCCAACGTAGTGCCTTCTACGAAGGAATTGGTCTCAACACCAAAGAATTCGA
CATGCATGTCATCTATGAGGTAAAATGAAGTGACTTTTTCCTGTTTGTATACTCAATTATGA-CATGCATGCCCTAGTTG
CTTCATTGAGTGTTTTATCAGGCAGTTTCTGGAGAGCTGCTCAACATGACAATAATGACCTGTCGTACAATAAACATCAC
CCCTATGAAGCATTATACTCTACTCCCTCTGTTCCATAATATAAAAGCGTTTTTGACACTACATTAATATCAAAAATGTT
CTTGTATTATGGGACGGAGGGAGTAGTTTATTTATATGCTTATTATGACAATATTAGAGCTTCGACGTAAACCAAGACCT
CTATTGATGATACTGTTGGTGCATATCTCTGCAGACCAACCGCACGACGGCGAGGATCTTCCCTGCTGTACCGGATGTTG
AGAACCCTGAATTCAAGAGGAAGCTAGACAGGATGGTAGATATCAACCTGAAGATCATTTCTATAGGAGAGTCCAACGAC
ATGCCCCTGGTGAAGAACCTAAAGAGGGTTCCTCTTATTGCCCAACTAGTGTCTGAGATCATCGCTGCGTACCTCATGCC
CTCAATCGAGTCTGGCTCCGTTGATTTTGCCGAGTTTGAGCCCAAGCTTGTCTACTGAATTTGTAGAAAAAGGATCCATC
TCTGCCTTTCTTCTCAGACATAATCATGCTCCTCA-------AGAGTCTCTGAATGAGCACATGATCCATGGTTAATTAA
CATGATCTACATCCTCCTGTGCTCATCTGTAAAGTATTAAAACTCGGCAAGTTTTTGCTTAGTCACATCAACATGTAAGT
GGCAGTGAACTGCATCAGAGCATGTGTTCCGGTTTTGCTTCAGGTGGAGAAGCATATCTGAAGTTGTTATGTAACTTGTG
TTGATAC----TTAAATAGCAATATAGCATCCGATTTTGTAGATATGTTATGTATCACACATGGCATGT-----------
--------------------------TGTTAGGTCAACAACGGCATTGATATTTTATTACCGTAAATGCATGCAC-----
----------------GAAATTAAAGAGTAAAATTCATGAAACTGCATCTATTTGTACAAAATATCACAAAACGATGCCC
TTACACAAAGTCTCAAGAAACTACATATGGCTAGGCGAAATATATGGAAAACTACACTTTTATGTGCAACTC--TGTAAC
ATAATGTGACCTCTTTTTATGCCACGATGTCATTTCCCTACATGGATGGAGTGTGGTTAACATTGTGACGTTGTCATGCC
CTAGGGGTGTCTCACTGTCACCTTACCAGAAGCCGGT------------------CCCCCTAGGTCGGTTACGCAATGTG
CCAATCAACCCGGCCATGGCCCCACGACATGATGGTCCCGCAAGGCTTGATGTACAAGACAAGGCAACCGGCGTCCGAAT
GACTCCTCTTAACCAACTTA--------------------------------------------------GAACATGTAA
CACTAGACACCGGCA-CCCATAAAAGCCGAGGCTAGGCTAGTCGCAT---------------------------------
-----------------------------------------------------------------
>SNPs
-S-SSSSSSSSSSSSSSSSS------SS------S-----------S-------------S--------S----------
----------------S-----------------------------------------S-----------------S---
-------------------------------------------------------------------S------------
S--------------------S-S-S--------------------------------------------------S---
--------------------------------------------------------------------------------
S---------------------------------------S--------S------S--------------------S--
---------------------------------------------------------------------S----------
-------------SSS--------------------S---------------------------------------S---
----------------------------S--------------------------------S------------------
--------------S----------------------------------SSS-SSSS-----------------------
-----------------SSS------------------------------S---------SSSSSSSSS-----------
----------------------------------------S---------------------------------------
-------------------------------------------S------------------------------------
--------------------------------------------------------------------------------
-----------------S--------------------------------------------------------------
-----------------------------S--------------------------------------------------
------------S-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------S-----------------------------
-----------------------------S--------------------S------S------------------S---
-SSSSSSSSSSS----------S--------S------------S-----------------------------------
-S-----------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS--------SS--S------------S--SSSSSS------------------S-
--------------------------------------------------------------------------------
-----S--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------SS----
-------------------S-----------------------------------------------S------------
--------------------------------------------------------------------------------
--------------------------------S----------------------------------S---S--------
------------------S-------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------S-------S------------S------------S-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------S-------------------------------------------------------------
----------------------------------------S---------------------------------------
--------------------------------------------------------------------------------
---S----------------------------------------------------------------------------
-------------------------------------------S------------------------------------
------------------------------------------------------------------S--------SSSSS
SSSSSSSSSSSSSSSS--------------------------S-------------------------------------
---SS---------------------------S---------------------------------S-----SS------
------------------S---------SS--------------------------------------------S---S-
------------S-----------S------------SSSSSSSSSSSSSSSSSS------------------------S
-----S----------------------S-------------------------S---------S-------S-------
--------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S--
----------S----S-------------S---------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_774
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------TAATCACATGCGGCTGCTCT--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------
>reverse_2246
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----TTTCAACCTGGCTCTGGACC-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------
>forward_1811
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------CAGGCACGCTGGGTATGTAA-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------
>reverse_3939
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------GTGCCACGATAGCATTTCCC------------------------------------------
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