Multiple sequence alignment - TraesCS3D01G194000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G194000 chr3D 100.000 3167 0 0 1 3167 185067035 185070201 0.000000e+00 5849
1 TraesCS3D01G194000 chr3A 93.114 2861 129 19 324 3167 243869938 243872747 0.000000e+00 4130
2 TraesCS3D01G194000 chr3A 91.935 310 22 3 21 327 243867907 243868216 6.280000e-117 431
3 TraesCS3D01G194000 chr3B 90.787 3202 132 39 18 3167 263786935 263790025 0.000000e+00 4128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G194000 chr3D 185067035 185070201 3166 False 5849.0 5849 100.0000 1 3167 1 chr3D.!!$F1 3166
1 TraesCS3D01G194000 chr3A 243867907 243872747 4840 False 2280.5 4130 92.5245 21 3167 2 chr3A.!!$F1 3146
2 TraesCS3D01G194000 chr3B 263786935 263790025 3090 False 4128.0 4128 90.7870 18 3167 1 chr3B.!!$F1 3149

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
385 2114 0.753479 ACGACCAGATGGCGAGAGAT 60.753 55.0 18.21 0.0 39.32 2.75 F
1257 3014 1.022451 GGAATTAGTTCGGGCGTGCA 61.022 55.0 0.00 0.0 35.10 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1435 3214 0.177141 GTAACGGTGGCCTATGCTCA 59.823 55.0 3.32 0.0 37.74 4.26 R
2670 4468 0.036765 TACTGGGCAGCGTAACCAAG 60.037 55.0 0.00 0.0 33.13 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 1.807165 GTCGCGCATGAGCTTCTCA 60.807 57.895 19.47 0.00 44.99 3.27
107 108 2.032528 CGCTCCCTCTTTGTGCCA 59.967 61.111 0.00 0.00 0.00 4.92
165 167 1.143305 CATCTTCGGCGTCCATGATC 58.857 55.000 6.85 0.00 0.00 2.92
173 175 2.223829 CGGCGTCCATGATCTTACTCTT 60.224 50.000 0.00 0.00 0.00 2.85
214 217 7.908827 TCCAATGATGAATTGTCCAAAAATG 57.091 32.000 0.00 0.00 43.66 2.32
231 234 6.352516 CAAAAATGGCTCTACTAGTGGATCT 58.647 40.000 9.62 0.00 0.00 2.75
307 311 9.660180 AAACTAAATTTACAAGAAAAGTTGGCA 57.340 25.926 0.00 0.00 30.87 4.92
313 317 7.546778 TTTACAAGAAAAGTTGGCAAAATCC 57.453 32.000 0.00 0.00 0.00 3.01
383 2112 1.226802 CACGACCAGATGGCGAGAG 60.227 63.158 18.21 7.49 39.32 3.20
385 2114 0.753479 ACGACCAGATGGCGAGAGAT 60.753 55.000 18.21 0.00 39.32 2.75
426 2155 2.738480 TGGGAAGTCCACGAACGG 59.262 61.111 0.00 0.00 41.46 4.44
435 2164 2.230940 CCACGAACGGCTCATAGCG 61.231 63.158 0.00 0.00 43.62 4.26
457 2186 4.796495 GGGCAGCGGGGGTAACAG 62.796 72.222 0.00 0.00 39.74 3.16
484 2213 1.717194 CGGCGGCTAAAGAAAGTGTA 58.283 50.000 7.61 0.00 0.00 2.90
490 2219 4.680975 GCGGCTAAAGAAAGTGTATCTCCT 60.681 45.833 0.00 0.00 0.00 3.69
491 2220 4.806247 CGGCTAAAGAAAGTGTATCTCCTG 59.194 45.833 0.00 0.00 0.00 3.86
492 2221 5.394224 CGGCTAAAGAAAGTGTATCTCCTGA 60.394 44.000 0.00 0.00 0.00 3.86
493 2222 6.407202 GGCTAAAGAAAGTGTATCTCCTGAA 58.593 40.000 0.00 0.00 0.00 3.02
494 2223 6.879458 GGCTAAAGAAAGTGTATCTCCTGAAA 59.121 38.462 0.00 0.00 0.00 2.69
495 2224 7.554476 GGCTAAAGAAAGTGTATCTCCTGAAAT 59.446 37.037 0.00 0.00 0.00 2.17
496 2225 8.394121 GCTAAAGAAAGTGTATCTCCTGAAATG 58.606 37.037 0.00 0.00 0.00 2.32
557 2286 1.534163 TCGTTATATCGCCTCGTCCAG 59.466 52.381 0.00 0.00 0.00 3.86
560 2289 1.583495 TATATCGCCTCGTCCAGCCG 61.583 60.000 0.00 0.00 0.00 5.52
641 2370 7.095102 GGTTAGAAACGTTTTGGTATGCTCTTA 60.095 37.037 15.89 0.00 0.00 2.10
642 2371 8.448615 GTTAGAAACGTTTTGGTATGCTCTTAT 58.551 33.333 15.89 0.00 0.00 1.73
650 2379 8.700644 CGTTTTGGTATGCTCTTATACACTATC 58.299 37.037 0.00 0.00 35.67 2.08
670 2399 5.633830 ATCTAAAATGCATATCAAGCGGG 57.366 39.130 0.00 0.00 33.85 6.13
719 2448 5.182380 CGAGAAACCCTAAAACAATAGCCAA 59.818 40.000 0.00 0.00 0.00 4.52
1033 2770 2.606519 CCCCCACCGTCTCCTTCA 60.607 66.667 0.00 0.00 0.00 3.02
1189 2946 3.181507 CGTTGATGTTCCATGGCTAAGTG 60.182 47.826 6.96 0.00 0.00 3.16
1257 3014 1.022451 GGAATTAGTTCGGGCGTGCA 61.022 55.000 0.00 0.00 35.10 4.57
1274 3031 2.010497 TGCATAATTTTAGTCGCGGCA 58.990 42.857 15.58 3.45 0.00 5.69
1373 3136 8.627208 AAGAATGTTCATTTTTCTCTGCTAGA 57.373 30.769 0.00 0.00 0.00 2.43
1423 3202 6.819146 GCTCCTTTCAAACTTAGTGCTACTAT 59.181 38.462 0.00 0.00 29.64 2.12
1424 3203 7.980099 GCTCCTTTCAAACTTAGTGCTACTATA 59.020 37.037 0.00 0.00 29.64 1.31
1425 3204 9.871238 CTCCTTTCAAACTTAGTGCTACTATAA 57.129 33.333 0.00 0.00 29.64 0.98
1451 3230 1.070758 CTTATGAGCATAGGCCACCGT 59.929 52.381 5.01 0.00 42.56 4.83
1521 3307 1.201647 GCAGGTTGCTACAGACGAGTA 59.798 52.381 0.00 0.00 40.96 2.59
1532 3318 7.027760 TGCTACAGACGAGTAATTGAGTTTAG 58.972 38.462 0.00 0.00 0.00 1.85
1609 3395 4.997905 ATTAGCTACTGCGCATTACATG 57.002 40.909 12.24 0.00 45.42 3.21
1642 3428 2.897436 TGTGACATACATGAGCTCAGC 58.103 47.619 22.96 5.76 33.42 4.26
1661 3447 4.392754 TCAGCATGTCAATGTGTACATCAC 59.607 41.667 0.00 0.00 41.71 3.06
1706 3492 6.748333 TCTTTTCTGTAGCAATTCCATCTG 57.252 37.500 0.00 0.00 0.00 2.90
1718 3504 7.613585 AGCAATTCCATCTGATGATAGTAGAG 58.386 38.462 18.92 0.00 0.00 2.43
1744 3530 5.452302 GCACAATAAATTTAGCTACTGCACG 59.548 40.000 3.94 0.00 42.74 5.34
1789 3575 7.330262 TGTGACATACATGAGCTCAGAATTTA 58.670 34.615 22.96 8.54 33.42 1.40
1799 3585 9.003112 CATGAGCTCAGAATTTAAATGTTTACG 57.997 33.333 22.96 0.00 0.00 3.18
1829 3620 8.414778 GTGTAAGCATAGATCCTACTAAGTGTT 58.585 37.037 0.00 0.00 0.00 3.32
1957 3749 1.065926 CAGAGGCTGGTGCAACTGATA 60.066 52.381 13.47 0.00 42.12 2.15
2071 3863 1.272147 GGATGAAGGTGGCCAAGAAGT 60.272 52.381 7.24 0.00 0.00 3.01
2420 4218 6.097554 TCTGAAGCAAGTTTTGGGATGTTTTA 59.902 34.615 0.00 0.00 0.00 1.52
2421 4219 6.825610 TGAAGCAAGTTTTGGGATGTTTTAT 58.174 32.000 0.00 0.00 0.00 1.40
2422 4220 7.278875 TGAAGCAAGTTTTGGGATGTTTTATT 58.721 30.769 0.00 0.00 0.00 1.40
2423 4221 7.772757 TGAAGCAAGTTTTGGGATGTTTTATTT 59.227 29.630 0.00 0.00 0.00 1.40
2424 4222 7.728847 AGCAAGTTTTGGGATGTTTTATTTC 57.271 32.000 0.00 0.00 0.00 2.17
2449 4247 8.138712 TCTTTTGCCGTTTGTTATTCTGTAAAT 58.861 29.630 0.00 0.00 0.00 1.40
2670 4468 1.160137 ATCTCCGTTTGCTTGCTCAC 58.840 50.000 0.00 0.00 0.00 3.51
2750 4548 2.575532 TGCTCAAGGAAGGAACAACAG 58.424 47.619 0.00 0.00 0.00 3.16
2752 4550 2.487265 GCTCAAGGAAGGAACAACAGGA 60.487 50.000 0.00 0.00 0.00 3.86
2753 4551 3.820557 CTCAAGGAAGGAACAACAGGAA 58.179 45.455 0.00 0.00 0.00 3.36
2754 4552 3.551846 TCAAGGAAGGAACAACAGGAAC 58.448 45.455 0.00 0.00 0.00 3.62
2755 4553 3.053991 TCAAGGAAGGAACAACAGGAACA 60.054 43.478 0.00 0.00 0.00 3.18
2756 4554 3.662759 AGGAAGGAACAACAGGAACAA 57.337 42.857 0.00 0.00 0.00 2.83
2757 4555 3.288092 AGGAAGGAACAACAGGAACAAC 58.712 45.455 0.00 0.00 0.00 3.32
2758 4556 3.020984 GGAAGGAACAACAGGAACAACA 58.979 45.455 0.00 0.00 0.00 3.33
2759 4557 3.445805 GGAAGGAACAACAGGAACAACAA 59.554 43.478 0.00 0.00 0.00 2.83
2760 4558 4.421058 GAAGGAACAACAGGAACAACAAC 58.579 43.478 0.00 0.00 0.00 3.32
2778 4576 6.037610 ACAACAACAACAACAACAACAACAAT 59.962 30.769 0.00 0.00 0.00 2.71
2783 4581 5.343593 ACAACAACAACAACAACAATGTACG 59.656 36.000 0.00 0.00 39.40 3.67
2967 4766 0.764369 TCTGGGTCTGCTTGGTCAGT 60.764 55.000 0.00 0.00 35.63 3.41
2968 4767 0.321122 CTGGGTCTGCTTGGTCAGTC 60.321 60.000 0.00 0.00 35.63 3.51
2969 4768 1.053835 TGGGTCTGCTTGGTCAGTCA 61.054 55.000 0.00 0.00 35.63 3.41
2970 4769 0.321122 GGGTCTGCTTGGTCAGTCAG 60.321 60.000 0.00 0.00 35.63 3.51
2971 4770 0.394565 GGTCTGCTTGGTCAGTCAGT 59.605 55.000 0.00 0.00 35.63 3.41
2972 4771 1.618837 GGTCTGCTTGGTCAGTCAGTA 59.381 52.381 0.00 0.00 35.63 2.74
2973 4772 2.610727 GGTCTGCTTGGTCAGTCAGTAC 60.611 54.545 0.00 0.00 35.63 2.73
3017 4816 2.592861 GCAGGCAGGCGGAATAGG 60.593 66.667 0.00 0.00 0.00 2.57
3039 4838 0.527565 GAACTGGATGCGGCATTGTT 59.472 50.000 17.78 19.88 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.106131 CGGATCGACGGCATGGAA 59.894 61.111 0.00 0.00 0.00 3.53
1 2 3.133767 GACGGATCGACGGCATGGA 62.134 63.158 0.00 0.00 42.70 3.41
2 3 2.658593 GACGGATCGACGGCATGG 60.659 66.667 0.00 0.00 42.70 3.66
12 13 3.696426 GCTCATGCGCGACGGATC 61.696 66.667 12.10 0.00 35.39 3.36
13 14 3.723235 AAGCTCATGCGCGACGGAT 62.723 57.895 12.10 0.89 45.42 4.18
14 15 4.435436 AAGCTCATGCGCGACGGA 62.435 61.111 12.10 1.39 45.42 4.69
15 16 3.918220 GAAGCTCATGCGCGACGG 61.918 66.667 12.10 0.00 45.42 4.79
16 17 2.854214 GAGAAGCTCATGCGCGACG 61.854 63.158 12.10 0.00 45.42 5.12
35 36 3.199727 ACCAAAACAGAACAAAAGGCCAT 59.800 39.130 5.01 0.00 0.00 4.40
43 44 5.098893 CGACATTTCACCAAAACAGAACAA 58.901 37.500 0.00 0.00 0.00 2.83
107 108 0.176680 CTGACTGGATAGCGGCAACT 59.823 55.000 1.45 0.00 0.00 3.16
165 167 3.729462 CGAGCTTCGAGTCCAAGAGTAAG 60.729 52.174 1.20 0.00 43.74 2.34
214 217 6.596497 GTGTAGATAGATCCACTAGTAGAGCC 59.404 46.154 3.59 0.00 34.35 4.70
231 234 8.531982 GGCATAGGATTACATTCTGTGTAGATA 58.468 37.037 0.00 0.00 43.79 1.98
383 2112 1.379642 GCTGCAGCCCCACAACTATC 61.380 60.000 28.76 0.00 34.31 2.08
385 2114 2.034066 GCTGCAGCCCCACAACTA 59.966 61.111 28.76 0.00 34.31 2.24
420 2149 0.933509 GTACCGCTATGAGCCGTTCG 60.934 60.000 0.00 0.00 38.18 3.95
426 2155 2.355956 GCCCGTACCGCTATGAGC 60.356 66.667 0.00 0.00 38.02 4.26
442 2171 4.715523 TGCTGTTACCCCCGCTGC 62.716 66.667 0.00 0.00 0.00 5.25
447 2176 1.897423 GCCATTTGCTGTTACCCCC 59.103 57.895 0.00 0.00 36.87 5.40
453 2182 4.054825 CCGCCGCCATTTGCTGTT 62.055 61.111 0.00 0.00 38.05 3.16
457 2186 3.349481 TTTAGCCGCCGCCATTTGC 62.349 57.895 0.00 0.00 34.57 3.68
484 2213 6.150641 CACAGACATTTCACATTTCAGGAGAT 59.849 38.462 0.00 0.00 0.00 2.75
490 2219 5.240623 GGTACCACAGACATTTCACATTTCA 59.759 40.000 7.15 0.00 0.00 2.69
491 2220 5.240623 TGGTACCACAGACATTTCACATTTC 59.759 40.000 11.60 0.00 0.00 2.17
492 2221 5.136828 TGGTACCACAGACATTTCACATTT 58.863 37.500 11.60 0.00 0.00 2.32
493 2222 4.724399 TGGTACCACAGACATTTCACATT 58.276 39.130 11.60 0.00 0.00 2.71
494 2223 4.365514 TGGTACCACAGACATTTCACAT 57.634 40.909 11.60 0.00 0.00 3.21
495 2224 3.847671 TGGTACCACAGACATTTCACA 57.152 42.857 11.60 0.00 0.00 3.58
496 2225 5.938125 AGTATTGGTACCACAGACATTTCAC 59.062 40.000 16.04 0.58 0.00 3.18
560 2289 2.555757 CCAGCTAGCCTTCATATTTGGC 59.444 50.000 12.13 0.00 46.42 4.52
642 2371 8.925700 CGCTTGATATGCATTTTAGATAGTGTA 58.074 33.333 3.54 0.00 0.00 2.90
650 2379 3.004629 TGCCCGCTTGATATGCATTTTAG 59.995 43.478 3.54 0.23 0.00 1.85
866 2603 0.515564 TTAGTCGCGCTTGAAAAGGC 59.484 50.000 5.56 0.00 46.35 4.35
1257 3014 4.449068 CAGAGATGCCGCGACTAAAATTAT 59.551 41.667 8.23 0.00 0.00 1.28
1274 3031 1.411977 CCATCGAGGACAAGCAGAGAT 59.588 52.381 0.00 0.00 41.22 2.75
1423 3202 6.486657 GTGGCCTATGCTCATAAGACAATTTA 59.513 38.462 3.32 0.00 37.74 1.40
1424 3203 5.300286 GTGGCCTATGCTCATAAGACAATTT 59.700 40.000 3.32 0.00 37.74 1.82
1425 3204 4.823989 GTGGCCTATGCTCATAAGACAATT 59.176 41.667 3.32 0.00 37.74 2.32
1426 3205 4.392940 GTGGCCTATGCTCATAAGACAAT 58.607 43.478 3.32 0.00 37.74 2.71
1427 3206 3.433598 GGTGGCCTATGCTCATAAGACAA 60.434 47.826 3.32 0.00 37.74 3.18
1428 3207 2.104792 GGTGGCCTATGCTCATAAGACA 59.895 50.000 3.32 0.00 37.74 3.41
1429 3208 2.772287 GGTGGCCTATGCTCATAAGAC 58.228 52.381 3.32 0.00 37.74 3.01
1430 3209 1.344438 CGGTGGCCTATGCTCATAAGA 59.656 52.381 3.32 0.00 37.74 2.10
1431 3210 1.070758 ACGGTGGCCTATGCTCATAAG 59.929 52.381 3.32 0.00 37.74 1.73
1432 3211 1.128200 ACGGTGGCCTATGCTCATAA 58.872 50.000 3.32 0.00 37.74 1.90
1433 3212 1.128200 AACGGTGGCCTATGCTCATA 58.872 50.000 3.32 0.00 37.74 2.15
1434 3213 1.128200 TAACGGTGGCCTATGCTCAT 58.872 50.000 3.32 0.00 37.74 2.90
1435 3214 0.177141 GTAACGGTGGCCTATGCTCA 59.823 55.000 3.32 0.00 37.74 4.26
1436 3215 0.874607 CGTAACGGTGGCCTATGCTC 60.875 60.000 3.32 0.00 37.74 4.26
1437 3216 1.143183 CGTAACGGTGGCCTATGCT 59.857 57.895 3.32 0.00 37.74 3.79
1451 3230 3.930229 CGGATTTCATCAAGTGTCCGTAA 59.070 43.478 3.63 0.00 42.54 3.18
1521 3307 9.807649 GAAAACATATGGCATCTAAACTCAATT 57.192 29.630 1.65 0.00 0.00 2.32
1532 3318 5.334724 GCTGCTAGAGAAAACATATGGCATC 60.335 44.000 1.65 1.96 0.00 3.91
1609 3395 4.571984 TGTATGTCACATTGCTCATAGCAC 59.428 41.667 0.00 0.00 41.10 4.40
1661 3447 2.988010 TGGCCTGTCTATGCTTACAG 57.012 50.000 3.32 0.00 42.25 2.74
1718 3504 6.688813 GTGCAGTAGCTAAATTTATTGTGCTC 59.311 38.462 11.66 8.04 42.74 4.26
1744 3530 7.169140 TGTCACATGATTCGTAGCATATGTAAC 59.831 37.037 0.00 2.29 27.26 2.50
1789 3575 5.994887 TGCTTACACTGACGTAAACATTT 57.005 34.783 0.00 0.00 31.19 2.32
1799 3585 6.642707 AGTAGGATCTATGCTTACACTGAC 57.357 41.667 0.00 0.00 0.00 3.51
1829 3620 5.277974 GCTACAAGAAGAGCAATGACAAACA 60.278 40.000 0.00 0.00 38.62 2.83
1957 3749 4.379243 CTCTGGTTGCTCCGCGGT 62.379 66.667 27.15 0.00 39.52 5.68
2420 4218 6.983890 ACAGAATAACAAACGGCAAAAGAAAT 59.016 30.769 0.00 0.00 0.00 2.17
2421 4219 6.334202 ACAGAATAACAAACGGCAAAAGAAA 58.666 32.000 0.00 0.00 0.00 2.52
2422 4220 5.897050 ACAGAATAACAAACGGCAAAAGAA 58.103 33.333 0.00 0.00 0.00 2.52
2423 4221 5.508200 ACAGAATAACAAACGGCAAAAGA 57.492 34.783 0.00 0.00 0.00 2.52
2424 4222 7.687005 TTTACAGAATAACAAACGGCAAAAG 57.313 32.000 0.00 0.00 0.00 2.27
2569 4367 5.920840 CACGAGACTTGTCTGAAAACTGATA 59.079 40.000 8.11 0.00 0.00 2.15
2648 4446 1.131315 GAGCAAGCAAACGGAGATTCC 59.869 52.381 0.00 0.00 0.00 3.01
2670 4468 0.036765 TACTGGGCAGCGTAACCAAG 60.037 55.000 0.00 0.00 33.13 3.61
2750 4548 4.508124 TGTTGTTGTTGTTGTTGTTGTTCC 59.492 37.500 0.00 0.00 0.00 3.62
2752 4550 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
2753 4551 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
2754 4552 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
2755 4553 6.037610 ACATTGTTGTTGTTGTTGTTGTTGTT 59.962 30.769 0.00 0.00 29.55 2.83
2756 4554 5.525378 ACATTGTTGTTGTTGTTGTTGTTGT 59.475 32.000 0.00 0.00 29.55 3.32
2757 4555 5.983475 ACATTGTTGTTGTTGTTGTTGTTG 58.017 33.333 0.00 0.00 29.55 3.33
2758 4556 6.129062 CGTACATTGTTGTTGTTGTTGTTGTT 60.129 34.615 0.00 0.00 37.28 2.83
2759 4557 5.343593 CGTACATTGTTGTTGTTGTTGTTGT 59.656 36.000 0.00 0.00 37.28 3.32
2760 4558 5.719895 GCGTACATTGTTGTTGTTGTTGTTG 60.720 40.000 0.00 0.00 37.28 3.33
2778 4576 0.834687 AGAGTTTGAGGGGGCGTACA 60.835 55.000 0.00 0.00 0.00 2.90
2783 4581 2.224793 ACTGTAAAGAGTTTGAGGGGGC 60.225 50.000 0.00 0.00 0.00 5.80
2967 4766 1.475403 GCCTGCCTACTGAGTACTGA 58.525 55.000 0.00 0.00 0.00 3.41
2968 4767 0.461961 GGCCTGCCTACTGAGTACTG 59.538 60.000 0.00 0.00 0.00 2.74
2969 4768 0.336737 AGGCCTGCCTACTGAGTACT 59.663 55.000 9.42 0.00 46.14 2.73
2970 4769 0.461961 CAGGCCTGCCTACTGAGTAC 59.538 60.000 22.33 0.00 46.28 2.73
2971 4770 0.335019 TCAGGCCTGCCTACTGAGTA 59.665 55.000 28.91 3.28 46.28 2.59
2972 4771 0.545309 TTCAGGCCTGCCTACTGAGT 60.545 55.000 28.91 0.00 46.28 3.41
2973 4772 0.615331 TTTCAGGCCTGCCTACTGAG 59.385 55.000 28.91 0.46 46.28 3.35
2995 4794 2.283143 ATTCCGCCTGCCTGCCATTA 62.283 55.000 0.00 0.00 0.00 1.90
3017 4816 0.749454 AATGCCGCATCCAGTTCTCC 60.749 55.000 6.27 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.