Multiple sequence alignment - TraesCS3D01G187100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G187100 chr3D 100.000 4060 0 0 1 4060 173619317 173615258 0.000000e+00 7498
1 TraesCS3D01G187100 chr3D 97.541 244 6 0 3282 3525 535998125 535998368 6.280000e-113 418
2 TraesCS3D01G187100 chr3D 96.327 245 8 1 3280 3524 388340141 388339898 6.320000e-108 401
3 TraesCS3D01G187100 chr3D 95.851 241 10 0 3284 3524 417173243 417173483 1.370000e-104 390
4 TraesCS3D01G187100 chr3D 93.511 262 14 3 3284 3545 6990061 6990319 1.770000e-103 387
5 TraesCS3D01G187100 chr3D 83.667 300 45 4 1 298 98940785 98940488 3.090000e-71 279
6 TraesCS3D01G187100 chr3B 91.696 2589 99 46 758 3278 252359453 252356913 0.000000e+00 3483
7 TraesCS3D01G187100 chr3B 96.992 266 5 2 3523 3785 252356910 252356645 1.040000e-120 444
8 TraesCS3D01G187100 chr3B 93.571 280 5 3 3781 4057 252356612 252356343 4.890000e-109 405
9 TraesCS3D01G187100 chr3B 95.420 131 6 0 1605 1735 355437313 355437443 4.110000e-50 209
10 TraesCS3D01G187100 chr3B 81.366 161 18 5 1263 1411 32715897 32715737 1.980000e-23 121
11 TraesCS3D01G187100 chr3A 95.279 1525 50 8 1734 3251 212089461 212087952 0.000000e+00 2398
12 TraesCS3D01G187100 chr3A 91.191 1646 85 17 1 1610 212091081 212089460 0.000000e+00 2182
13 TraesCS3D01G187100 chr3A 88.561 542 25 16 3523 4057 212087934 212087423 1.240000e-174 623
14 TraesCS3D01G187100 chr3A 83.820 377 49 7 1 366 636397188 636396813 8.350000e-92 348
15 TraesCS3D01G187100 chr3A 81.915 376 55 9 1 366 643213601 643213229 5.100000e-79 305
16 TraesCS3D01G187100 chr3A 82.838 303 46 5 2 299 158163548 158163247 2.410000e-67 267
17 TraesCS3D01G187100 chr6D 95.918 245 10 0 3284 3528 340181468 340181224 8.180000e-107 398
18 TraesCS3D01G187100 chr6D 93.382 136 9 0 1600 1735 126108397 126108262 6.880000e-48 202
19 TraesCS3D01G187100 chr6D 93.382 136 9 0 1601 1736 160470638 160470773 6.880000e-48 202
20 TraesCS3D01G187100 chr7D 95.885 243 10 0 3283 3525 72121820 72122062 1.060000e-105 394
21 TraesCS3D01G187100 chr7D 80.851 376 61 8 1 366 25058282 25058656 6.640000e-73 285
22 TraesCS3D01G187100 chr2D 95.833 240 10 0 3287 3526 562752813 562752574 4.920000e-104 388
23 TraesCS3D01G187100 chr2D 95.102 245 10 2 3280 3524 30427600 30427358 6.370000e-103 385
24 TraesCS3D01G187100 chr2D 90.637 267 17 5 414 673 325807340 325807605 8.350000e-92 348
25 TraesCS3D01G187100 chr2D 81.977 172 13 9 1261 1414 79871133 79871304 3.290000e-26 130
26 TraesCS3D01G187100 chr2A 93.333 255 15 2 3280 3533 362446139 362445886 3.830000e-100 375
27 TraesCS3D01G187100 chr2A 91.463 82 7 0 1263 1344 52543088 52543169 3.320000e-21 113
28 TraesCS3D01G187100 chr5B 89.964 279 25 3 398 673 136056166 136056444 1.390000e-94 357
29 TraesCS3D01G187100 chr6A 90.637 267 19 2 412 673 436534232 436533967 2.320000e-92 350
30 TraesCS3D01G187100 chr6A 88.652 282 23 5 412 686 315391635 315391356 6.500000e-88 335
31 TraesCS3D01G187100 chr6A 82.943 299 42 6 7 297 452304435 452304138 1.120000e-65 261
32 TraesCS3D01G187100 chr1D 91.633 251 19 2 415 664 289963915 289963666 3.000000e-91 346
33 TraesCS3D01G187100 chr1D 94.074 135 8 0 1609 1743 478911800 478911666 5.320000e-49 206
34 TraesCS3D01G187100 chr1D 93.382 136 9 0 1600 1735 127143411 127143276 6.880000e-48 202
35 TraesCS3D01G187100 chr1A 90.000 270 19 5 412 674 478208978 478208710 3.890000e-90 342
36 TraesCS3D01G187100 chr1A 90.000 270 19 4 412 674 478212060 478211792 3.890000e-90 342
37 TraesCS3D01G187100 chr4D 89.630 270 22 2 412 675 313032371 313032102 5.030000e-89 339
38 TraesCS3D01G187100 chr4D 78.667 375 66 11 1 366 460665258 460664889 1.890000e-58 237
39 TraesCS3D01G187100 chr2B 82.181 376 52 11 2 366 513249966 513249595 3.940000e-80 309
40 TraesCS3D01G187100 chr2B 94.815 135 7 0 1601 1735 199013860 199013726 1.140000e-50 211
41 TraesCS3D01G187100 chr4A 80.376 372 58 12 10 370 467253910 467253543 6.690000e-68 268
42 TraesCS3D01G187100 chr4A 95.294 85 4 0 1263 1347 605088118 605088034 7.080000e-28 135
43 TraesCS3D01G187100 chr7A 96.899 129 4 0 1607 1735 454048956 454049084 2.460000e-52 217
44 TraesCS3D01G187100 chr5D 95.455 132 6 0 1607 1738 558898412 558898543 1.140000e-50 211
45 TraesCS3D01G187100 chr5D 94.161 137 8 0 1608 1744 241844205 241844069 4.110000e-50 209
46 TraesCS3D01G187100 chr5D 81.176 170 14 10 1263 1414 242969766 242969597 1.980000e-23 121


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G187100 chr3D 173615258 173619317 4059 True 7498.000000 7498 100.000000 1 4060 1 chr3D.!!$R2 4059
1 TraesCS3D01G187100 chr3B 252356343 252359453 3110 True 1444.000000 3483 94.086333 758 4057 3 chr3B.!!$R2 3299
2 TraesCS3D01G187100 chr3A 212087423 212091081 3658 True 1734.333333 2398 91.677000 1 4057 3 chr3A.!!$R4 4056
3 TraesCS3D01G187100 chr1A 478208710 478212060 3350 True 342.000000 342 90.000000 412 674 2 chr1A.!!$R1 262

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
38 39 0.037697 CGTGGATCCACCGAAGACAA 60.038 55.0 34.05 0.0 43.49 3.18 F
282 284 0.107017 CCATGGCCCTAAGACCACAG 60.107 60.0 0.00 0.0 39.19 3.66 F
332 338 0.321298 GCACGAGAAACCCTAGCCAA 60.321 55.0 0.00 0.0 0.00 4.52 F
2106 3733 0.726827 AATGCACGCTACACCATTCG 59.273 50.0 0.00 0.0 0.00 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1754 3371 0.972471 GGCCCAATTGCAAGCTAGGT 60.972 55.0 4.94 0.0 0.00 3.08 R
2277 3907 0.946221 CTCAGGTCACCGAACTGCAC 60.946 60.0 4.11 0.0 45.97 4.57 R
2288 3918 2.296471 GAGGAAGAAACGTCTCAGGTCA 59.704 50.0 0.00 0.0 30.70 4.02 R
3476 5335 0.032515 TCCTCTATCCCCGTGCTTCA 60.033 55.0 0.00 0.0 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 1.183030 ACGTGGATCCACCGAAGACA 61.183 55.000 34.05 0.00 43.49 3.41
38 39 0.037697 CGTGGATCCACCGAAGACAA 60.038 55.000 34.05 0.00 43.49 3.18
39 40 1.606994 CGTGGATCCACCGAAGACAAA 60.607 52.381 34.05 0.00 43.49 2.83
40 41 1.804748 GTGGATCCACCGAAGACAAAC 59.195 52.381 31.37 4.21 42.61 2.93
41 42 1.418264 TGGATCCACCGAAGACAAACA 59.582 47.619 11.44 0.00 42.61 2.83
42 43 1.804748 GGATCCACCGAAGACAAACAC 59.195 52.381 6.95 0.00 0.00 3.32
43 44 1.804748 GATCCACCGAAGACAAACACC 59.195 52.381 0.00 0.00 0.00 4.16
48 49 1.134610 ACCGAAGACAAACACCGAACT 60.135 47.619 0.00 0.00 0.00 3.01
77 78 0.250513 AGATCCGCCAGAGACAAACC 59.749 55.000 0.00 0.00 0.00 3.27
78 79 0.250513 GATCCGCCAGAGACAAACCT 59.749 55.000 0.00 0.00 0.00 3.50
80 81 1.376037 CCGCCAGAGACAAACCTCC 60.376 63.158 0.00 0.00 33.76 4.30
81 82 1.371183 CGCCAGAGACAAACCTCCA 59.629 57.895 0.00 0.00 33.76 3.86
82 83 0.951040 CGCCAGAGACAAACCTCCAC 60.951 60.000 0.00 0.00 33.76 4.02
83 84 0.108585 GCCAGAGACAAACCTCCACA 59.891 55.000 0.00 0.00 33.76 4.17
84 85 1.884235 CCAGAGACAAACCTCCACAC 58.116 55.000 0.00 0.00 33.76 3.82
85 86 1.502231 CAGAGACAAACCTCCACACG 58.498 55.000 0.00 0.00 33.76 4.49
86 87 1.120530 AGAGACAAACCTCCACACGT 58.879 50.000 0.00 0.00 33.76 4.49
111 112 3.496130 CCGATGATGCTAGAAACACCATC 59.504 47.826 0.00 0.00 35.74 3.51
112 113 3.183172 CGATGATGCTAGAAACACCATCG 59.817 47.826 10.11 10.11 43.36 3.84
118 119 3.055458 TGCTAGAAACACCATCGGAATGA 60.055 43.478 0.00 0.00 34.61 2.57
126 127 3.133003 ACACCATCGGAATGAAGACTAGG 59.867 47.826 0.00 0.00 34.61 3.02
157 158 6.900186 AGAACCTTATTCCATCTTCAGAGAGA 59.100 38.462 0.00 0.00 34.85 3.10
162 163 0.820226 CCATCTTCAGAGAGACGCCA 59.180 55.000 0.00 0.00 34.85 5.69
165 166 0.735471 TCTTCAGAGAGACGCCATCG 59.265 55.000 0.00 0.00 42.43 3.84
202 204 7.466804 TGAGAGGACATAAACCCTAACAAAAT 58.533 34.615 0.00 0.00 31.84 1.82
212 214 7.786178 AAACCCTAACAAAATTCAAGAAAGC 57.214 32.000 0.00 0.00 0.00 3.51
215 217 8.189119 ACCCTAACAAAATTCAAGAAAGCATA 57.811 30.769 0.00 0.00 0.00 3.14
234 236 1.003718 AAAAACCGGAGCTCTCCCG 60.004 57.895 9.46 9.68 46.96 5.14
282 284 0.107017 CCATGGCCCTAAGACCACAG 60.107 60.000 0.00 0.00 39.19 3.66
288 290 1.623811 GCCCTAAGACCACAGAAGACA 59.376 52.381 0.00 0.00 0.00 3.41
291 293 3.578716 CCCTAAGACCACAGAAGACAAGA 59.421 47.826 0.00 0.00 0.00 3.02
297 299 4.464597 AGACCACAGAAGACAAGATAGACC 59.535 45.833 0.00 0.00 0.00 3.85
298 300 4.160329 ACCACAGAAGACAAGATAGACCA 58.840 43.478 0.00 0.00 0.00 4.02
299 301 4.593206 ACCACAGAAGACAAGATAGACCAA 59.407 41.667 0.00 0.00 0.00 3.67
301 303 5.511373 CCACAGAAGACAAGATAGACCAACA 60.511 44.000 0.00 0.00 0.00 3.33
304 306 3.238108 AGACAAGATAGACCAACAGCG 57.762 47.619 0.00 0.00 0.00 5.18
306 308 1.623811 ACAAGATAGACCAACAGCGGT 59.376 47.619 0.00 0.00 43.91 5.68
308 310 3.119101 ACAAGATAGACCAACAGCGGTAG 60.119 47.826 0.00 0.00 40.22 3.18
310 312 1.068741 GATAGACCAACAGCGGTAGGG 59.931 57.143 6.15 6.15 40.22 3.53
325 331 1.262640 TAGGGAGGCACGAGAAACCC 61.263 60.000 0.00 0.00 37.79 4.11
332 338 0.321298 GCACGAGAAACCCTAGCCAA 60.321 55.000 0.00 0.00 0.00 4.52
349 355 3.829026 AGCCAAATGGTTCTCTTTCTTCC 59.171 43.478 0.71 0.00 37.57 3.46
350 356 3.573967 GCCAAATGGTTCTCTTTCTTCCA 59.426 43.478 0.71 0.00 37.57 3.53
351 357 4.559502 GCCAAATGGTTCTCTTTCTTCCAC 60.560 45.833 0.71 0.00 37.57 4.02
352 358 4.320494 CCAAATGGTTCTCTTTCTTCCACG 60.320 45.833 0.00 0.00 0.00 4.94
353 359 2.543777 TGGTTCTCTTTCTTCCACGG 57.456 50.000 0.00 0.00 0.00 4.94
354 360 1.071699 TGGTTCTCTTTCTTCCACGGG 59.928 52.381 0.00 0.00 0.00 5.28
355 361 1.346722 GGTTCTCTTTCTTCCACGGGA 59.653 52.381 0.00 0.00 0.00 5.14
356 362 2.224450 GGTTCTCTTTCTTCCACGGGAA 60.224 50.000 5.42 5.42 39.66 3.97
447 2007 1.263356 TCACCTTCTTCCCACTACCG 58.737 55.000 0.00 0.00 0.00 4.02
566 2126 7.716799 TCAAAATATAAGGCAATTCACAGGT 57.283 32.000 0.00 0.00 0.00 4.00
630 2190 7.561021 TTGACAAGTAAATCACAAGCTAACA 57.439 32.000 0.00 0.00 0.00 2.41
710 2275 6.990939 ACTAGGAAGTTTGACTTGGAAGTTAC 59.009 38.462 0.00 0.00 38.80 2.50
711 2276 5.751586 AGGAAGTTTGACTTGGAAGTTACA 58.248 37.500 0.00 0.00 38.80 2.41
712 2277 6.184789 AGGAAGTTTGACTTGGAAGTTACAA 58.815 36.000 0.00 0.00 38.80 2.41
721 2286 8.570068 TGACTTGGAAGTTACAAAACTAAAGT 57.430 30.769 1.35 10.93 45.37 2.66
813 2378 1.728971 GAGTCAGCGTCAATGTCCAAG 59.271 52.381 0.00 0.00 0.00 3.61
931 2500 4.518970 GCCAAGGATTGTCTTGTCAGTAAA 59.481 41.667 0.00 0.00 46.99 2.01
932 2501 5.009610 GCCAAGGATTGTCTTGTCAGTAAAA 59.990 40.000 0.00 0.00 46.99 1.52
933 2502 6.460953 GCCAAGGATTGTCTTGTCAGTAAAAA 60.461 38.462 0.00 0.00 46.99 1.94
1006 2575 4.363990 CGATCTCGGCGATGGGGG 62.364 72.222 11.27 0.00 35.37 5.40
1369 2950 4.653801 AGGGAAAAACAGCACATTTACCTT 59.346 37.500 3.08 0.00 43.36 3.50
1442 3024 5.620206 TGATTAGATGGCGGAATTATGTGT 58.380 37.500 0.00 0.00 0.00 3.72
1446 3028 3.753272 AGATGGCGGAATTATGTGTATGC 59.247 43.478 0.00 0.00 0.00 3.14
1566 3148 2.652941 CACCACATTATGTTGTGCCC 57.347 50.000 14.98 0.00 44.53 5.36
1580 3162 4.832266 TGTTGTGCCCATATTTTTGTCTCT 59.168 37.500 0.00 0.00 0.00 3.10
1617 3199 3.640029 TGGGTTTAGCTAATACTCCCTCG 59.360 47.826 23.98 0.00 35.00 4.63
1620 3202 4.261952 GGTTTAGCTAATACTCCCTCGGTC 60.262 50.000 7.08 0.00 0.00 4.79
1623 3205 1.756690 GCTAATACTCCCTCGGTCCCA 60.757 57.143 0.00 0.00 0.00 4.37
1627 3209 1.961133 TACTCCCTCGGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
1628 3210 1.073098 ACTCCCTCGGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
1629 3211 1.004394 ACTCCCTCGGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
1630 3212 1.282157 CTCCCTCGGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
1631 3213 1.708551 TCCCTCGGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
1637 3219 4.975631 TCGGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
1639 3221 5.001232 CGGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
1640 3222 5.648092 CGGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
1641 3223 6.151144 CGGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
1642 3224 7.309194 CGGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
1644 3226 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
1645 3227 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
1655 3237 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
1656 3238 8.693120 TGTCTTAGATTTGTCTAGATACGGAT 57.307 34.615 0.00 0.00 0.00 4.18
1657 3239 8.568794 TGTCTTAGATTTGTCTAGATACGGATG 58.431 37.037 0.00 0.00 0.00 3.51
1659 3241 8.568794 TCTTAGATTTGTCTAGATACGGATGTG 58.431 37.037 0.00 0.00 0.00 3.21
1666 3271 8.454570 TTGTCTAGATACGGATGTGTATAACA 57.545 34.615 0.00 0.00 44.79 2.41
1710 3315 8.569641 ACATCCGTATCTAGACAAATCTAAGAC 58.430 37.037 0.00 0.00 36.98 3.01
1711 3316 8.568794 CATCCGTATCTAGACAAATCTAAGACA 58.431 37.037 0.00 0.00 36.98 3.41
1712 3317 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
1713 3318 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
1714 3319 8.622157 CCGTATCTAGACAAATCTAAGACAAGA 58.378 37.037 0.00 0.00 36.98 3.02
1722 3339 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
1754 3371 9.227777 GGGAGTAAAACTTAAGCTTTTGATCTA 57.772 33.333 3.20 0.00 0.00 1.98
1859 3476 6.697641 TTGGGATTCCCTATTGGTAGTATC 57.302 41.667 22.38 0.00 45.70 2.24
2106 3733 0.726827 AATGCACGCTACACCATTCG 59.273 50.000 0.00 0.00 0.00 3.34
2288 3918 0.951558 GAACATTGGTGCAGTTCGGT 59.048 50.000 0.63 0.00 33.24 4.69
2328 3958 3.007398 CCTCTCAGCTTTCTACCACTTGT 59.993 47.826 0.00 0.00 0.00 3.16
2395 4025 2.802247 GGGCAAAGCTTGAAACATCAAC 59.198 45.455 0.00 0.00 0.00 3.18
2396 4026 3.493176 GGGCAAAGCTTGAAACATCAACT 60.493 43.478 0.00 0.00 0.00 3.16
2741 4429 4.821589 CCAGAACGGCTCGCTCCC 62.822 72.222 0.00 0.00 0.00 4.30
3076 4764 3.599343 GATGATGTAGTCTGCACCAACA 58.401 45.455 0.00 0.00 0.00 3.33
3079 4937 2.238942 TGTAGTCTGCACCAACACAG 57.761 50.000 0.00 0.00 35.15 3.66
3106 4964 5.073008 TCCATAGGGAAGTAGCAATGCAATA 59.927 40.000 8.35 0.00 41.32 1.90
3128 4986 0.456312 CAAGTAGTCCGCACGGAGAC 60.456 60.000 12.96 13.36 46.16 3.36
3192 5050 7.165483 GTGATTCTTCGTTCTACCATTAGTACG 59.835 40.741 4.92 4.92 45.53 3.67
3193 5051 6.500684 TTCTTCGTTCTACCATTAGTACGT 57.499 37.500 9.66 0.00 44.85 3.57
3194 5052 7.609760 TTCTTCGTTCTACCATTAGTACGTA 57.390 36.000 9.66 0.00 44.85 3.57
3196 5054 8.213518 TCTTCGTTCTACCATTAGTACGTATT 57.786 34.615 0.00 0.00 44.85 1.89
3197 5055 9.325198 TCTTCGTTCTACCATTAGTACGTATTA 57.675 33.333 0.00 0.00 44.85 0.98
3198 5056 9.591404 CTTCGTTCTACCATTAGTACGTATTAG 57.409 37.037 0.00 0.00 44.85 1.73
3251 5109 5.086058 CGAAATTGGTCTTAATCACCGTTG 58.914 41.667 0.50 0.00 36.61 4.10
3278 5137 3.057456 CCCGAGTACTGGTGCTGATATAC 60.057 52.174 0.00 0.00 0.00 1.47
3280 5139 5.001874 CCGAGTACTGGTGCTGATATACTA 58.998 45.833 0.00 0.00 0.00 1.82
3281 5140 5.122554 CCGAGTACTGGTGCTGATATACTAG 59.877 48.000 0.00 0.00 0.00 2.57
3282 5141 5.701750 CGAGTACTGGTGCTGATATACTAGT 59.298 44.000 0.00 0.00 40.88 2.57
3283 5142 6.205076 CGAGTACTGGTGCTGATATACTAGTT 59.795 42.308 0.00 0.00 39.07 2.24
3284 5143 7.387122 CGAGTACTGGTGCTGATATACTAGTTA 59.613 40.741 0.00 0.00 39.07 2.24
3285 5144 8.393671 AGTACTGGTGCTGATATACTAGTTAC 57.606 38.462 0.00 0.00 39.07 2.50
3286 5145 8.219178 AGTACTGGTGCTGATATACTAGTTACT 58.781 37.037 0.00 0.00 39.07 2.24
3287 5146 7.513371 ACTGGTGCTGATATACTAGTTACTC 57.487 40.000 0.00 0.00 35.45 2.59
3288 5147 6.490721 ACTGGTGCTGATATACTAGTTACTCC 59.509 42.308 0.00 0.00 35.45 3.85
3289 5148 5.773680 TGGTGCTGATATACTAGTTACTCCC 59.226 44.000 0.00 0.00 0.00 4.30
3290 5149 6.011481 GGTGCTGATATACTAGTTACTCCCT 58.989 44.000 0.00 0.00 0.00 4.20
3291 5150 6.151480 GGTGCTGATATACTAGTTACTCCCTC 59.849 46.154 0.00 0.00 0.00 4.30
3292 5151 6.151480 GTGCTGATATACTAGTTACTCCCTCC 59.849 46.154 0.00 0.00 0.00 4.30
3293 5152 6.183361 TGCTGATATACTAGTTACTCCCTCCA 60.183 42.308 0.00 0.00 0.00 3.86
3294 5153 6.893005 GCTGATATACTAGTTACTCCCTCCAT 59.107 42.308 0.00 0.00 0.00 3.41
3295 5154 7.397761 GCTGATATACTAGTTACTCCCTCCATT 59.602 40.741 0.00 0.00 0.00 3.16
3296 5155 9.315363 CTGATATACTAGTTACTCCCTCCATTT 57.685 37.037 0.00 0.00 0.00 2.32
3297 5156 9.310449 TGATATACTAGTTACTCCCTCCATTTC 57.690 37.037 0.00 0.00 0.00 2.17
3298 5157 9.310449 GATATACTAGTTACTCCCTCCATTTCA 57.690 37.037 0.00 0.00 0.00 2.69
3299 5158 7.989947 ATACTAGTTACTCCCTCCATTTCAA 57.010 36.000 0.00 0.00 0.00 2.69
3300 5159 6.697641 ACTAGTTACTCCCTCCATTTCAAA 57.302 37.500 0.00 0.00 0.00 2.69
3301 5160 7.086685 ACTAGTTACTCCCTCCATTTCAAAA 57.913 36.000 0.00 0.00 0.00 2.44
3302 5161 7.699878 ACTAGTTACTCCCTCCATTTCAAAAT 58.300 34.615 0.00 0.00 0.00 1.82
3303 5162 8.832735 ACTAGTTACTCCCTCCATTTCAAAATA 58.167 33.333 0.00 0.00 0.00 1.40
3304 5163 9.853177 CTAGTTACTCCCTCCATTTCAAAATAT 57.147 33.333 0.00 0.00 0.00 1.28
3306 5165 9.853177 AGTTACTCCCTCCATTTCAAAATATAG 57.147 33.333 0.00 0.00 0.00 1.31
3307 5166 9.628500 GTTACTCCCTCCATTTCAAAATATAGT 57.372 33.333 0.00 0.00 0.00 2.12
3308 5167 9.627123 TTACTCCCTCCATTTCAAAATATAGTG 57.373 33.333 0.00 0.00 0.00 2.74
3309 5168 6.547510 ACTCCCTCCATTTCAAAATATAGTGC 59.452 38.462 0.00 0.00 0.00 4.40
3310 5169 5.530915 TCCCTCCATTTCAAAATATAGTGCG 59.469 40.000 0.00 0.00 0.00 5.34
3311 5170 5.215160 CCTCCATTTCAAAATATAGTGCGC 58.785 41.667 0.00 0.00 0.00 6.09
3312 5171 5.181690 TCCATTTCAAAATATAGTGCGCC 57.818 39.130 4.18 0.00 0.00 6.53
3313 5172 4.037446 TCCATTTCAAAATATAGTGCGCCC 59.963 41.667 4.18 0.00 0.00 6.13
3314 5173 3.684103 TTTCAAAATATAGTGCGCCCG 57.316 42.857 4.18 0.00 0.00 6.13
3315 5174 0.941542 TCAAAATATAGTGCGCCCGC 59.058 50.000 4.18 5.60 42.35 6.13
3316 5175 0.384230 CAAAATATAGTGCGCCCGCG 60.384 55.000 4.18 4.36 45.51 6.46
3331 5190 4.388499 GCGCTTCCCGAGGTCCAA 62.388 66.667 0.00 0.00 40.02 3.53
3332 5191 2.434359 CGCTTCCCGAGGTCCAAC 60.434 66.667 0.00 0.00 40.02 3.77
3333 5192 2.943978 CGCTTCCCGAGGTCCAACT 61.944 63.158 0.00 0.00 40.02 3.16
3334 5193 1.375326 GCTTCCCGAGGTCCAACTT 59.625 57.895 0.00 0.00 0.00 2.66
3335 5194 0.250770 GCTTCCCGAGGTCCAACTTT 60.251 55.000 0.00 0.00 0.00 2.66
3336 5195 1.523758 CTTCCCGAGGTCCAACTTTG 58.476 55.000 0.00 0.00 0.00 2.77
3337 5196 1.071699 CTTCCCGAGGTCCAACTTTGA 59.928 52.381 0.00 0.00 0.00 2.69
3338 5197 0.395312 TCCCGAGGTCCAACTTTGAC 59.605 55.000 0.00 0.00 0.00 3.18
3339 5198 0.605589 CCCGAGGTCCAACTTTGACC 60.606 60.000 4.16 4.16 39.18 4.02
3340 5199 0.107831 CCGAGGTCCAACTTTGACCA 59.892 55.000 13.24 0.00 41.22 4.02
3341 5200 1.271379 CCGAGGTCCAACTTTGACCAT 60.271 52.381 13.24 0.72 41.22 3.55
3342 5201 2.027561 CCGAGGTCCAACTTTGACCATA 60.028 50.000 13.24 0.00 41.22 2.74
3343 5202 3.558321 CCGAGGTCCAACTTTGACCATAA 60.558 47.826 13.24 0.00 41.22 1.90
3344 5203 4.069304 CGAGGTCCAACTTTGACCATAAA 58.931 43.478 13.24 0.00 41.22 1.40
3345 5204 4.700213 CGAGGTCCAACTTTGACCATAAAT 59.300 41.667 13.24 0.00 41.22 1.40
3346 5205 5.183140 CGAGGTCCAACTTTGACCATAAATT 59.817 40.000 13.24 0.00 41.22 1.82
3347 5206 6.294508 CGAGGTCCAACTTTGACCATAAATTT 60.295 38.462 13.24 0.00 41.22 1.82
3348 5207 7.094549 CGAGGTCCAACTTTGACCATAAATTTA 60.095 37.037 13.24 0.00 41.22 1.40
3349 5208 8.122472 AGGTCCAACTTTGACCATAAATTTAG 57.878 34.615 13.24 0.00 41.22 1.85
3350 5209 6.811665 GGTCCAACTTTGACCATAAATTTAGC 59.188 38.462 7.09 0.00 38.76 3.09
3351 5210 6.811665 GTCCAACTTTGACCATAAATTTAGCC 59.188 38.462 3.94 0.00 0.00 3.93
3352 5211 6.495181 TCCAACTTTGACCATAAATTTAGCCA 59.505 34.615 3.94 0.00 0.00 4.75
3353 5212 7.015682 TCCAACTTTGACCATAAATTTAGCCAA 59.984 33.333 3.94 2.96 0.00 4.52
3354 5213 7.117667 CCAACTTTGACCATAAATTTAGCCAAC 59.882 37.037 3.94 0.00 0.00 3.77
3355 5214 6.386654 ACTTTGACCATAAATTTAGCCAACG 58.613 36.000 3.94 5.66 0.00 4.10
3356 5215 6.207810 ACTTTGACCATAAATTTAGCCAACGA 59.792 34.615 3.94 0.00 0.00 3.85
3357 5216 5.811399 TGACCATAAATTTAGCCAACGAG 57.189 39.130 3.94 0.00 0.00 4.18
3358 5217 5.492895 TGACCATAAATTTAGCCAACGAGA 58.507 37.500 3.94 0.00 0.00 4.04
3359 5218 5.353123 TGACCATAAATTTAGCCAACGAGAC 59.647 40.000 3.94 0.00 0.00 3.36
3360 5219 4.638865 ACCATAAATTTAGCCAACGAGACC 59.361 41.667 3.94 0.00 0.00 3.85
3361 5220 4.260620 CCATAAATTTAGCCAACGAGACCG 60.261 45.833 3.94 0.00 42.50 4.79
3362 5221 2.754946 AATTTAGCCAACGAGACCGA 57.245 45.000 0.00 0.00 39.50 4.69
3363 5222 2.981859 ATTTAGCCAACGAGACCGAT 57.018 45.000 0.00 0.00 39.50 4.18
3364 5223 2.754946 TTTAGCCAACGAGACCGATT 57.245 45.000 0.00 0.00 39.50 3.34
3365 5224 2.004583 TTAGCCAACGAGACCGATTG 57.995 50.000 0.00 0.00 39.50 2.67
3366 5225 0.459585 TAGCCAACGAGACCGATTGC 60.460 55.000 0.00 0.00 39.50 3.56
3367 5226 3.081133 CCAACGAGACCGATTGCG 58.919 61.111 0.00 0.00 39.50 4.85
3377 5236 2.817834 CGATTGCGGCGGGAGAAA 60.818 61.111 9.78 0.00 0.00 2.52
3378 5237 2.395360 CGATTGCGGCGGGAGAAAA 61.395 57.895 9.78 0.00 0.00 2.29
3379 5238 1.880186 GATTGCGGCGGGAGAAAAA 59.120 52.632 9.78 0.00 0.00 1.94
3380 5239 0.179163 GATTGCGGCGGGAGAAAAAG 60.179 55.000 9.78 0.00 0.00 2.27
3381 5240 0.893727 ATTGCGGCGGGAGAAAAAGT 60.894 50.000 9.78 0.00 0.00 2.66
3382 5241 1.104577 TTGCGGCGGGAGAAAAAGTT 61.105 50.000 9.78 0.00 0.00 2.66
3383 5242 0.250381 TGCGGCGGGAGAAAAAGTTA 60.250 50.000 9.78 0.00 0.00 2.24
3384 5243 1.092348 GCGGCGGGAGAAAAAGTTAT 58.908 50.000 9.78 0.00 0.00 1.89
3385 5244 2.282407 GCGGCGGGAGAAAAAGTTATA 58.718 47.619 9.78 0.00 0.00 0.98
3386 5245 2.876550 GCGGCGGGAGAAAAAGTTATAT 59.123 45.455 9.78 0.00 0.00 0.86
3387 5246 4.060205 GCGGCGGGAGAAAAAGTTATATA 58.940 43.478 9.78 0.00 0.00 0.86
3388 5247 4.512571 GCGGCGGGAGAAAAAGTTATATAA 59.487 41.667 9.78 0.00 0.00 0.98
3389 5248 5.180680 GCGGCGGGAGAAAAAGTTATATAAT 59.819 40.000 9.78 0.00 0.00 1.28
3390 5249 6.293790 GCGGCGGGAGAAAAAGTTATATAATT 60.294 38.462 9.78 0.00 0.00 1.40
3391 5250 7.075741 CGGCGGGAGAAAAAGTTATATAATTG 58.924 38.462 0.00 0.00 0.00 2.32
3392 5251 7.041644 CGGCGGGAGAAAAAGTTATATAATTGA 60.042 37.037 0.00 0.00 0.00 2.57
3393 5252 8.626526 GGCGGGAGAAAAAGTTATATAATTGAA 58.373 33.333 0.00 0.00 0.00 2.69
3427 5286 6.808829 TGAATACGAATTCACGGGTATAACT 58.191 36.000 6.22 0.00 45.17 2.24
3428 5287 7.267128 TGAATACGAATTCACGGGTATAACTT 58.733 34.615 6.22 0.00 45.17 2.66
3429 5288 7.765360 TGAATACGAATTCACGGGTATAACTTT 59.235 33.333 6.22 0.00 45.17 2.66
3430 5289 8.496707 AATACGAATTCACGGGTATAACTTTT 57.503 30.769 6.22 0.00 37.61 2.27
3431 5290 6.173191 ACGAATTCACGGGTATAACTTTTG 57.827 37.500 6.22 0.00 37.61 2.44
3432 5291 5.025826 CGAATTCACGGGTATAACTTTTGC 58.974 41.667 6.22 0.00 0.00 3.68
3433 5292 5.163794 CGAATTCACGGGTATAACTTTTGCT 60.164 40.000 6.22 0.00 0.00 3.91
3434 5293 5.813080 ATTCACGGGTATAACTTTTGCTC 57.187 39.130 0.00 0.00 0.00 4.26
3435 5294 3.602483 TCACGGGTATAACTTTTGCTCC 58.398 45.455 0.00 0.00 0.00 4.70
3436 5295 2.681344 CACGGGTATAACTTTTGCTCCC 59.319 50.000 0.00 0.00 0.00 4.30
3438 5297 1.674441 GGGTATAACTTTTGCTCCCGC 59.326 52.381 0.00 0.00 0.00 6.13
3439 5298 1.674441 GGTATAACTTTTGCTCCCGCC 59.326 52.381 0.00 0.00 34.43 6.13
3440 5299 1.329599 GTATAACTTTTGCTCCCGCCG 59.670 52.381 0.00 0.00 34.43 6.46
3441 5300 0.322187 ATAACTTTTGCTCCCGCCGT 60.322 50.000 0.00 0.00 34.43 5.68
3442 5301 0.321021 TAACTTTTGCTCCCGCCGTA 59.679 50.000 0.00 0.00 34.43 4.02
3443 5302 0.535553 AACTTTTGCTCCCGCCGTAA 60.536 50.000 0.00 0.00 34.43 3.18
3444 5303 0.322187 ACTTTTGCTCCCGCCGTAAT 60.322 50.000 0.00 0.00 34.43 1.89
3445 5304 0.377203 CTTTTGCTCCCGCCGTAATC 59.623 55.000 0.00 0.00 34.43 1.75
3446 5305 1.363145 TTTTGCTCCCGCCGTAATCG 61.363 55.000 0.00 0.00 34.43 3.34
3464 5323 8.496872 CGTAATCGGTCTTGTTTGTTAAATTT 57.503 30.769 0.00 0.00 0.00 1.82
3465 5324 8.960075 CGTAATCGGTCTTGTTTGTTAAATTTT 58.040 29.630 0.00 0.00 0.00 1.82
3468 5327 7.527084 TCGGTCTTGTTTGTTAAATTTTTGG 57.473 32.000 0.00 0.00 0.00 3.28
3469 5328 7.097834 TCGGTCTTGTTTGTTAAATTTTTGGT 58.902 30.769 0.00 0.00 0.00 3.67
3470 5329 7.275999 TCGGTCTTGTTTGTTAAATTTTTGGTC 59.724 33.333 0.00 0.00 0.00 4.02
3471 5330 7.063544 CGGTCTTGTTTGTTAAATTTTTGGTCA 59.936 33.333 0.00 0.00 0.00 4.02
3472 5331 8.722394 GGTCTTGTTTGTTAAATTTTTGGTCAA 58.278 29.630 0.00 0.00 0.00 3.18
3477 5336 9.884465 TGTTTGTTAAATTTTTGGTCAAAGTTG 57.116 25.926 0.00 0.00 0.00 3.16
3481 5340 8.447053 TGTTAAATTTTTGGTCAAAGTTGAAGC 58.553 29.630 0.00 0.00 39.21 3.86
3482 5341 8.447053 GTTAAATTTTTGGTCAAAGTTGAAGCA 58.553 29.630 0.00 0.00 39.21 3.91
3483 5342 6.421377 AATTTTTGGTCAAAGTTGAAGCAC 57.579 33.333 0.00 0.00 39.21 4.40
3484 5343 2.842208 TTGGTCAAAGTTGAAGCACG 57.158 45.000 0.00 0.00 39.21 5.34
3485 5344 1.021202 TGGTCAAAGTTGAAGCACGG 58.979 50.000 0.00 0.00 39.21 4.94
3486 5345 0.310854 GGTCAAAGTTGAAGCACGGG 59.689 55.000 0.00 0.00 39.21 5.28
3487 5346 0.310854 GTCAAAGTTGAAGCACGGGG 59.689 55.000 0.00 0.00 39.21 5.73
3488 5347 0.181587 TCAAAGTTGAAGCACGGGGA 59.818 50.000 0.00 0.00 33.55 4.81
3489 5348 1.202879 TCAAAGTTGAAGCACGGGGAT 60.203 47.619 0.00 0.00 33.55 3.85
3490 5349 2.039216 TCAAAGTTGAAGCACGGGGATA 59.961 45.455 0.00 0.00 33.55 2.59
3491 5350 2.403252 AAGTTGAAGCACGGGGATAG 57.597 50.000 0.00 0.00 0.00 2.08
3492 5351 1.568504 AGTTGAAGCACGGGGATAGA 58.431 50.000 0.00 0.00 0.00 1.98
3493 5352 1.482593 AGTTGAAGCACGGGGATAGAG 59.517 52.381 0.00 0.00 0.00 2.43
3494 5353 0.830648 TTGAAGCACGGGGATAGAGG 59.169 55.000 0.00 0.00 0.00 3.69
3495 5354 0.032515 TGAAGCACGGGGATAGAGGA 60.033 55.000 0.00 0.00 0.00 3.71
3496 5355 1.120530 GAAGCACGGGGATAGAGGAA 58.879 55.000 0.00 0.00 0.00 3.36
3497 5356 1.694696 GAAGCACGGGGATAGAGGAAT 59.305 52.381 0.00 0.00 0.00 3.01
3498 5357 1.343069 AGCACGGGGATAGAGGAATC 58.657 55.000 0.00 0.00 0.00 2.52
3499 5358 1.048601 GCACGGGGATAGAGGAATCA 58.951 55.000 0.00 0.00 0.00 2.57
3500 5359 1.270358 GCACGGGGATAGAGGAATCAC 60.270 57.143 0.00 0.00 0.00 3.06
3501 5360 2.320781 CACGGGGATAGAGGAATCACT 58.679 52.381 0.00 0.00 29.59 3.41
3502 5361 3.497332 CACGGGGATAGAGGAATCACTA 58.503 50.000 0.00 0.00 29.59 2.74
3503 5362 4.090090 CACGGGGATAGAGGAATCACTAT 58.910 47.826 0.00 0.00 31.09 2.12
3504 5363 5.262009 CACGGGGATAGAGGAATCACTATA 58.738 45.833 0.00 0.00 29.09 1.31
3505 5364 5.894393 CACGGGGATAGAGGAATCACTATAT 59.106 44.000 0.00 0.00 29.09 0.86
3506 5365 6.381420 CACGGGGATAGAGGAATCACTATATT 59.619 42.308 0.00 0.00 29.09 1.28
3507 5366 6.960542 ACGGGGATAGAGGAATCACTATATTT 59.039 38.462 0.00 0.00 29.09 1.40
3508 5367 7.458170 ACGGGGATAGAGGAATCACTATATTTT 59.542 37.037 0.00 0.00 29.09 1.82
3509 5368 7.766278 CGGGGATAGAGGAATCACTATATTTTG 59.234 40.741 0.00 0.00 29.09 2.44
3510 5369 8.826765 GGGGATAGAGGAATCACTATATTTTGA 58.173 37.037 0.00 0.00 29.09 2.69
3515 5374 8.438676 AGAGGAATCACTATATTTTGAAACGG 57.561 34.615 0.00 0.00 0.00 4.44
3516 5375 8.265055 AGAGGAATCACTATATTTTGAAACGGA 58.735 33.333 0.00 0.00 0.00 4.69
3517 5376 8.438676 AGGAATCACTATATTTTGAAACGGAG 57.561 34.615 0.00 0.00 0.00 4.63
3518 5377 7.499232 AGGAATCACTATATTTTGAAACGGAGG 59.501 37.037 0.00 0.00 0.00 4.30
3519 5378 7.255139 GGAATCACTATATTTTGAAACGGAGGG 60.255 40.741 0.00 0.00 0.00 4.30
3520 5379 6.302535 TCACTATATTTTGAAACGGAGGGA 57.697 37.500 0.00 0.00 0.00 4.20
3521 5380 6.346096 TCACTATATTTTGAAACGGAGGGAG 58.654 40.000 0.00 0.00 0.00 4.30
3544 5403 8.394121 GGAGTATGTTCTTTAGCTTGAATCTTG 58.606 37.037 0.00 0.00 0.00 3.02
3826 5726 2.424601 TGAAAGCACTTGCATAGCATCC 59.575 45.455 3.62 0.00 45.16 3.51
3983 5886 6.477053 TTCATGGTTTGGAACTCATGAAAA 57.523 33.333 21.61 10.68 45.34 2.29
3984 5887 5.841810 TCATGGTTTGGAACTCATGAAAAC 58.158 37.500 15.88 10.26 41.61 2.43
3985 5888 5.598005 TCATGGTTTGGAACTCATGAAAACT 59.402 36.000 15.85 0.00 41.61 2.66
3986 5889 5.514274 TGGTTTGGAACTCATGAAAACTC 57.486 39.130 15.85 9.28 32.60 3.01
3987 5890 4.952957 TGGTTTGGAACTCATGAAAACTCA 59.047 37.500 15.85 11.06 32.60 3.41
3988 5891 5.598005 TGGTTTGGAACTCATGAAAACTCAT 59.402 36.000 15.85 0.00 32.60 2.90
3989 5892 6.152379 GGTTTGGAACTCATGAAAACTCATC 58.848 40.000 15.85 1.11 32.60 2.92
3990 5893 6.239008 GGTTTGGAACTCATGAAAACTCATCA 60.239 38.462 15.85 0.00 32.60 3.07
3991 5894 6.957920 TTGGAACTCATGAAAACTCATCAA 57.042 33.333 0.00 0.00 0.00 2.57
3992 5895 6.317789 TGGAACTCATGAAAACTCATCAAC 57.682 37.500 0.00 0.00 0.00 3.18
4011 5914 8.075574 TCATCAACTTGCACAATTTTGTACTAG 58.924 33.333 0.00 0.19 39.91 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 1.445871 GCGGGATTAGTTCGGTGTTT 58.554 50.000 0.00 0.00 0.00 2.83
38 39 0.738412 CGCGGGATTAGTTCGGTGTT 60.738 55.000 0.00 0.00 0.00 3.32
39 40 1.153706 CGCGGGATTAGTTCGGTGT 60.154 57.895 0.00 0.00 0.00 4.16
40 41 0.870307 CTCGCGGGATTAGTTCGGTG 60.870 60.000 0.00 0.00 0.00 4.94
41 42 1.033746 TCTCGCGGGATTAGTTCGGT 61.034 55.000 3.45 0.00 0.00 4.69
42 43 0.314302 ATCTCGCGGGATTAGTTCGG 59.686 55.000 17.66 0.00 0.00 4.30
43 44 1.666311 GGATCTCGCGGGATTAGTTCG 60.666 57.143 24.71 0.00 0.00 3.95
85 86 3.799420 GTGTTTCTAGCATCATCGGAGAC 59.201 47.826 0.00 0.00 42.51 3.36
86 87 3.181475 GGTGTTTCTAGCATCATCGGAGA 60.181 47.826 0.00 0.00 45.75 3.71
111 112 3.024547 TCTCCACCTAGTCTTCATTCCG 58.975 50.000 0.00 0.00 0.00 4.30
112 113 4.282496 TCTCTCCACCTAGTCTTCATTCC 58.718 47.826 0.00 0.00 0.00 3.01
118 119 3.837399 AGGTTCTCTCCACCTAGTCTT 57.163 47.619 0.00 0.00 43.34 3.01
126 127 5.622346 AGATGGAATAAGGTTCTCTCCAC 57.378 43.478 0.00 0.00 38.95 4.02
157 158 3.296709 AAAGTCGAGGCGATGGCGT 62.297 57.895 0.00 0.00 41.24 5.68
162 163 1.403679 CTCTCAGAAAGTCGAGGCGAT 59.596 52.381 0.00 0.00 38.42 4.58
165 166 1.135228 GTCCTCTCAGAAAGTCGAGGC 60.135 57.143 0.00 0.00 42.15 4.70
237 239 0.321996 GATAGATCCCGACCCTTGCC 59.678 60.000 0.00 0.00 0.00 4.52
248 250 1.016130 CATGGTGGCGCGATAGATCC 61.016 60.000 12.10 0.00 39.76 3.36
249 251 1.016130 CCATGGTGGCGCGATAGATC 61.016 60.000 12.10 0.00 39.76 2.75
282 284 3.614616 CGCTGTTGGTCTATCTTGTCTTC 59.385 47.826 0.00 0.00 0.00 2.87
288 290 2.431057 CCTACCGCTGTTGGTCTATCTT 59.569 50.000 0.66 0.00 42.62 2.40
291 293 1.120530 CCCTACCGCTGTTGGTCTAT 58.879 55.000 7.85 0.00 42.62 1.98
297 299 2.125106 GCCTCCCTACCGCTGTTG 60.125 66.667 0.00 0.00 0.00 3.33
298 300 2.606519 TGCCTCCCTACCGCTGTT 60.607 61.111 0.00 0.00 0.00 3.16
299 301 3.391382 GTGCCTCCCTACCGCTGT 61.391 66.667 0.00 0.00 0.00 4.40
301 303 4.753662 TCGTGCCTCCCTACCGCT 62.754 66.667 0.00 0.00 0.00 5.52
304 306 0.108281 GTTTCTCGTGCCTCCCTACC 60.108 60.000 0.00 0.00 0.00 3.18
306 308 1.262640 GGGTTTCTCGTGCCTCCCTA 61.263 60.000 0.00 0.00 32.89 3.53
308 310 1.262640 TAGGGTTTCTCGTGCCTCCC 61.263 60.000 0.00 0.00 35.56 4.30
310 312 0.460459 GCTAGGGTTTCTCGTGCCTC 60.460 60.000 0.00 0.00 0.00 4.70
325 331 5.124617 GGAAGAAAGAGAACCATTTGGCTAG 59.875 44.000 0.00 0.00 39.32 3.42
332 338 3.412386 CCGTGGAAGAAAGAGAACCATT 58.588 45.455 0.00 0.00 33.19 3.16
349 355 8.986477 AATTTATCATTTTCTTTCTTCCCGTG 57.014 30.769 0.00 0.00 0.00 4.94
447 2007 1.880027 ACATGAAAGGTTGGACGAAGC 59.120 47.619 0.00 0.00 0.00 3.86
813 2378 2.061028 CTTTGGCAAGAAAACATCGCC 58.939 47.619 0.00 0.00 43.28 5.54
880 2449 4.768583 CCCTTTCTCTCTTCAGATTCAGG 58.231 47.826 0.00 0.00 0.00 3.86
1261 2830 3.706086 CACCTGCCATTAGCCCTAAAAAT 59.294 43.478 0.00 0.00 42.71 1.82
1369 2950 6.702449 ACATACTTGGATATGGCCTATTCA 57.298 37.500 3.32 1.49 36.95 2.57
1442 3024 6.542005 TCCATCGCAAAAGAAAAGATAGCATA 59.458 34.615 0.00 0.00 0.00 3.14
1446 3028 9.956720 ATAATTCCATCGCAAAAGAAAAGATAG 57.043 29.630 0.00 0.00 0.00 2.08
1566 3148 4.414852 CGGCAACCAGAGACAAAAATATG 58.585 43.478 0.00 0.00 0.00 1.78
1580 3162 2.733301 CCAACAATGCGGCAACCA 59.267 55.556 6.82 0.00 0.00 3.67
1617 3199 7.468141 AATCTAAGACAAGAATTTTGGGACC 57.532 36.000 5.68 0.00 0.00 4.46
1620 3202 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
1628 3210 8.622157 CCGTATCTAGACAAATCTAAGACAAGA 58.378 37.037 0.00 0.00 36.98 3.02
1629 3211 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
1630 3212 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
1631 3213 8.568794 CATCCGTATCTAGACAAATCTAAGACA 58.431 37.037 0.00 0.00 36.98 3.41
1637 3219 6.716934 ACACATCCGTATCTAGACAAATCT 57.283 37.500 0.00 0.00 39.15 2.40
1639 3221 9.909644 GTTATACACATCCGTATCTAGACAAAT 57.090 33.333 0.00 0.00 34.03 2.32
1640 3222 8.905850 TGTTATACACATCCGTATCTAGACAAA 58.094 33.333 0.00 0.00 34.03 2.83
1641 3223 8.454570 TGTTATACACATCCGTATCTAGACAA 57.545 34.615 0.00 0.00 34.03 3.18
1666 3271 8.008513 ACGGATGTATCTAGTGACATTTTAGT 57.991 34.615 11.79 8.18 36.42 2.24
1696 3301 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
1698 3303 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
1700 3305 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
1702 3307 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
1703 3308 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
1706 3311 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
1708 3313 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
1710 3315 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
1711 3316 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
1712 3317 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
1713 3318 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
1714 3319 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
1719 3336 0.978907 GTTTTACTCCCTCCGTCCCA 59.021 55.000 0.00 0.00 0.00 4.37
1722 3339 3.931468 GCTTAAGTTTTACTCCCTCCGTC 59.069 47.826 4.02 0.00 0.00 4.79
1754 3371 0.972471 GGCCCAATTGCAAGCTAGGT 60.972 55.000 4.94 0.00 0.00 3.08
2106 3733 1.610522 ACAGGAGAAGCACAACATTGC 59.389 47.619 0.00 0.00 43.34 3.56
2277 3907 0.946221 CTCAGGTCACCGAACTGCAC 60.946 60.000 4.11 0.00 45.97 4.57
2288 3918 2.296471 GAGGAAGAAACGTCTCAGGTCA 59.704 50.000 0.00 0.00 30.70 4.02
2395 4025 0.250640 AGCAAACTCAGGACTGCCAG 60.251 55.000 0.00 0.00 35.33 4.85
2396 4026 0.183492 AAGCAAACTCAGGACTGCCA 59.817 50.000 0.00 0.00 35.33 4.92
2741 4429 3.916172 CGTCTGCAATTCCTGAAAACATG 59.084 43.478 0.00 0.00 0.00 3.21
2852 4540 1.600636 CCCAACCTCTTCTTGCGCA 60.601 57.895 5.66 5.66 0.00 6.09
3099 4957 3.181455 TGCGGACTACTTGGATATTGCAT 60.181 43.478 0.00 0.00 0.00 3.96
3106 4964 0.968901 TCCGTGCGGACTACTTGGAT 60.969 55.000 9.48 0.00 39.76 3.41
3222 5080 7.201574 CGGTGATTAAGACCAATTTCGATTACA 60.202 37.037 7.13 0.00 32.45 2.41
3251 5109 2.363925 ACCAGTACTCGGGCCTCC 60.364 66.667 0.84 0.00 32.18 4.30
3278 5137 9.853177 ATATTTTGAAATGGAGGGAGTAACTAG 57.147 33.333 0.00 0.00 0.00 2.57
3280 5139 9.853177 CTATATTTTGAAATGGAGGGAGTAACT 57.147 33.333 0.00 0.00 0.00 2.24
3281 5140 9.628500 ACTATATTTTGAAATGGAGGGAGTAAC 57.372 33.333 0.00 0.00 0.00 2.50
3282 5141 9.627123 CACTATATTTTGAAATGGAGGGAGTAA 57.373 33.333 0.00 0.00 0.00 2.24
3283 5142 7.719633 GCACTATATTTTGAAATGGAGGGAGTA 59.280 37.037 0.00 0.00 0.00 2.59
3284 5143 6.547510 GCACTATATTTTGAAATGGAGGGAGT 59.452 38.462 0.00 0.00 0.00 3.85
3285 5144 6.293626 CGCACTATATTTTGAAATGGAGGGAG 60.294 42.308 0.00 0.00 0.00 4.30
3286 5145 5.530915 CGCACTATATTTTGAAATGGAGGGA 59.469 40.000 0.00 0.00 0.00 4.20
3287 5146 5.762045 CGCACTATATTTTGAAATGGAGGG 58.238 41.667 0.00 0.00 0.00 4.30
3288 5147 5.215160 GCGCACTATATTTTGAAATGGAGG 58.785 41.667 0.30 0.00 0.00 4.30
3289 5148 5.215160 GGCGCACTATATTTTGAAATGGAG 58.785 41.667 10.83 0.06 0.00 3.86
3290 5149 4.037446 GGGCGCACTATATTTTGAAATGGA 59.963 41.667 10.83 0.00 0.00 3.41
3291 5150 4.298332 GGGCGCACTATATTTTGAAATGG 58.702 43.478 10.83 0.00 0.00 3.16
3292 5151 3.974401 CGGGCGCACTATATTTTGAAATG 59.026 43.478 8.62 0.00 0.00 2.32
3293 5152 3.550030 GCGGGCGCACTATATTTTGAAAT 60.550 43.478 8.62 0.00 41.49 2.17
3294 5153 2.223386 GCGGGCGCACTATATTTTGAAA 60.223 45.455 8.62 0.00 41.49 2.69
3295 5154 1.332375 GCGGGCGCACTATATTTTGAA 59.668 47.619 8.62 0.00 41.49 2.69
3296 5155 0.941542 GCGGGCGCACTATATTTTGA 59.058 50.000 8.62 0.00 41.49 2.69
3297 5156 0.384230 CGCGGGCGCACTATATTTTG 60.384 55.000 8.62 0.00 42.06 2.44
3298 5157 1.938861 CGCGGGCGCACTATATTTT 59.061 52.632 8.62 0.00 42.06 1.82
3299 5158 3.637714 CGCGGGCGCACTATATTT 58.362 55.556 8.62 0.00 42.06 1.40
3314 5173 4.388499 TTGGACCTCGGGAAGCGC 62.388 66.667 0.00 0.00 0.00 5.92
3315 5174 2.434359 GTTGGACCTCGGGAAGCG 60.434 66.667 0.00 0.00 0.00 4.68
3316 5175 0.250770 AAAGTTGGACCTCGGGAAGC 60.251 55.000 0.00 0.00 0.00 3.86
3317 5176 1.071699 TCAAAGTTGGACCTCGGGAAG 59.928 52.381 0.00 0.00 0.00 3.46
3318 5177 1.133363 TCAAAGTTGGACCTCGGGAA 58.867 50.000 0.00 0.00 0.00 3.97
3319 5178 0.395312 GTCAAAGTTGGACCTCGGGA 59.605 55.000 0.00 0.00 0.00 5.14
3320 5179 2.928416 GTCAAAGTTGGACCTCGGG 58.072 57.895 0.00 0.00 0.00 5.14
3326 5185 6.811665 GGCTAAATTTATGGTCAAAGTTGGAC 59.188 38.462 1.31 1.31 28.95 4.02
3327 5186 6.495181 TGGCTAAATTTATGGTCAAAGTTGGA 59.505 34.615 0.00 0.00 28.95 3.53
3328 5187 6.696411 TGGCTAAATTTATGGTCAAAGTTGG 58.304 36.000 0.00 0.00 30.24 3.77
3329 5188 7.148820 CGTTGGCTAAATTTATGGTCAAAGTTG 60.149 37.037 6.17 0.00 29.44 3.16
3330 5189 6.866248 CGTTGGCTAAATTTATGGTCAAAGTT 59.134 34.615 6.17 0.00 31.36 2.66
3331 5190 6.207810 TCGTTGGCTAAATTTATGGTCAAAGT 59.792 34.615 13.40 0.00 0.00 2.66
3332 5191 6.616947 TCGTTGGCTAAATTTATGGTCAAAG 58.383 36.000 6.17 8.14 0.00 2.77
3333 5192 6.431543 TCTCGTTGGCTAAATTTATGGTCAAA 59.568 34.615 6.17 0.00 0.00 2.69
3334 5193 5.941058 TCTCGTTGGCTAAATTTATGGTCAA 59.059 36.000 0.00 0.00 0.00 3.18
3335 5194 5.353123 GTCTCGTTGGCTAAATTTATGGTCA 59.647 40.000 0.00 0.00 0.00 4.02
3336 5195 5.220796 GGTCTCGTTGGCTAAATTTATGGTC 60.221 44.000 0.00 0.00 0.00 4.02
3337 5196 4.638865 GGTCTCGTTGGCTAAATTTATGGT 59.361 41.667 0.00 0.00 0.00 3.55
3338 5197 4.260620 CGGTCTCGTTGGCTAAATTTATGG 60.261 45.833 0.00 0.00 0.00 2.74
3339 5198 4.569162 TCGGTCTCGTTGGCTAAATTTATG 59.431 41.667 0.00 0.00 37.69 1.90
3340 5199 4.761975 TCGGTCTCGTTGGCTAAATTTAT 58.238 39.130 0.00 0.00 37.69 1.40
3341 5200 4.191033 TCGGTCTCGTTGGCTAAATTTA 57.809 40.909 0.00 0.00 37.69 1.40
3342 5201 3.048337 TCGGTCTCGTTGGCTAAATTT 57.952 42.857 0.00 0.00 37.69 1.82
3343 5202 2.754946 TCGGTCTCGTTGGCTAAATT 57.245 45.000 0.00 0.00 37.69 1.82
3344 5203 2.936498 CAATCGGTCTCGTTGGCTAAAT 59.064 45.455 0.00 0.00 37.69 1.40
3345 5204 2.343101 CAATCGGTCTCGTTGGCTAAA 58.657 47.619 0.00 0.00 37.69 1.85
3346 5205 2.004583 CAATCGGTCTCGTTGGCTAA 57.995 50.000 0.00 0.00 37.69 3.09
3347 5206 0.459585 GCAATCGGTCTCGTTGGCTA 60.460 55.000 0.00 0.00 37.69 3.93
3348 5207 1.741770 GCAATCGGTCTCGTTGGCT 60.742 57.895 0.00 0.00 37.69 4.75
3349 5208 2.785258 GCAATCGGTCTCGTTGGC 59.215 61.111 0.00 0.00 37.69 4.52
3350 5209 3.081133 CGCAATCGGTCTCGTTGG 58.919 61.111 0.00 0.00 37.69 3.77
3360 5219 1.917782 TTTTTCTCCCGCCGCAATCG 61.918 55.000 0.00 0.00 0.00 3.34
3361 5220 0.179163 CTTTTTCTCCCGCCGCAATC 60.179 55.000 0.00 0.00 0.00 2.67
3362 5221 0.893727 ACTTTTTCTCCCGCCGCAAT 60.894 50.000 0.00 0.00 0.00 3.56
3363 5222 1.104577 AACTTTTTCTCCCGCCGCAA 61.105 50.000 0.00 0.00 0.00 4.85
3364 5223 0.250381 TAACTTTTTCTCCCGCCGCA 60.250 50.000 0.00 0.00 0.00 5.69
3365 5224 1.092348 ATAACTTTTTCTCCCGCCGC 58.908 50.000 0.00 0.00 0.00 6.53
3366 5225 6.796705 ATTATATAACTTTTTCTCCCGCCG 57.203 37.500 0.00 0.00 0.00 6.46
3367 5226 8.161699 TCAATTATATAACTTTTTCTCCCGCC 57.838 34.615 0.00 0.00 0.00 6.13
3403 5262 6.808829 AGTTATACCCGTGAATTCGTATTCA 58.191 36.000 12.80 12.80 45.99 2.57
3404 5263 7.704789 AAGTTATACCCGTGAATTCGTATTC 57.295 36.000 7.74 7.74 40.50 1.75
3405 5264 8.392612 CAAAAGTTATACCCGTGAATTCGTATT 58.607 33.333 8.44 0.00 0.00 1.89
3406 5265 7.466320 GCAAAAGTTATACCCGTGAATTCGTAT 60.466 37.037 0.04 5.16 0.00 3.06
3407 5266 6.183360 GCAAAAGTTATACCCGTGAATTCGTA 60.183 38.462 0.04 0.00 0.00 3.43
3408 5267 5.391203 GCAAAAGTTATACCCGTGAATTCGT 60.391 40.000 0.04 0.00 0.00 3.85
3409 5268 5.025826 GCAAAAGTTATACCCGTGAATTCG 58.974 41.667 0.04 0.00 0.00 3.34
3410 5269 6.190954 AGCAAAAGTTATACCCGTGAATTC 57.809 37.500 0.00 0.00 0.00 2.17
3411 5270 5.124936 GGAGCAAAAGTTATACCCGTGAATT 59.875 40.000 0.00 0.00 0.00 2.17
3412 5271 4.638865 GGAGCAAAAGTTATACCCGTGAAT 59.361 41.667 0.00 0.00 0.00 2.57
3413 5272 4.004982 GGAGCAAAAGTTATACCCGTGAA 58.995 43.478 0.00 0.00 0.00 3.18
3414 5273 3.602483 GGAGCAAAAGTTATACCCGTGA 58.398 45.455 0.00 0.00 0.00 4.35
3415 5274 2.681344 GGGAGCAAAAGTTATACCCGTG 59.319 50.000 0.00 0.00 0.00 4.94
3416 5275 2.995283 GGGAGCAAAAGTTATACCCGT 58.005 47.619 0.00 0.00 0.00 5.28
3439 5298 8.496872 AAATTTAACAAACAAGACCGATTACG 57.503 30.769 0.00 0.00 39.43 3.18
3442 5301 8.608317 CCAAAAATTTAACAAACAAGACCGATT 58.392 29.630 0.00 0.00 0.00 3.34
3443 5302 7.766738 ACCAAAAATTTAACAAACAAGACCGAT 59.233 29.630 0.00 0.00 0.00 4.18
3444 5303 7.097834 ACCAAAAATTTAACAAACAAGACCGA 58.902 30.769 0.00 0.00 0.00 4.69
3445 5304 7.063544 TGACCAAAAATTTAACAAACAAGACCG 59.936 33.333 0.00 0.00 0.00 4.79
3446 5305 8.257830 TGACCAAAAATTTAACAAACAAGACC 57.742 30.769 0.00 0.00 0.00 3.85
3451 5310 9.884465 CAACTTTGACCAAAAATTTAACAAACA 57.116 25.926 0.00 0.00 0.00 2.83
3455 5314 8.447053 GCTTCAACTTTGACCAAAAATTTAACA 58.553 29.630 0.00 0.00 36.83 2.41
3456 5315 8.447053 TGCTTCAACTTTGACCAAAAATTTAAC 58.553 29.630 0.00 0.00 36.83 2.01
3457 5316 8.447053 GTGCTTCAACTTTGACCAAAAATTTAA 58.553 29.630 0.00 0.00 36.83 1.52
3458 5317 7.201478 CGTGCTTCAACTTTGACCAAAAATTTA 60.201 33.333 0.00 0.00 36.83 1.40
3459 5318 6.402011 CGTGCTTCAACTTTGACCAAAAATTT 60.402 34.615 0.00 0.00 36.83 1.82
3460 5319 5.063312 CGTGCTTCAACTTTGACCAAAAATT 59.937 36.000 0.00 0.00 36.83 1.82
3461 5320 4.566360 CGTGCTTCAACTTTGACCAAAAAT 59.434 37.500 0.00 0.00 36.83 1.82
3462 5321 3.923461 CGTGCTTCAACTTTGACCAAAAA 59.077 39.130 0.00 0.00 36.83 1.94
3463 5322 3.506810 CGTGCTTCAACTTTGACCAAAA 58.493 40.909 0.00 0.00 36.83 2.44
3464 5323 2.159310 CCGTGCTTCAACTTTGACCAAA 60.159 45.455 0.00 0.00 36.83 3.28
3465 5324 1.403679 CCGTGCTTCAACTTTGACCAA 59.596 47.619 0.00 0.00 36.83 3.67
3466 5325 1.021202 CCGTGCTTCAACTTTGACCA 58.979 50.000 0.00 0.00 36.83 4.02
3467 5326 0.310854 CCCGTGCTTCAACTTTGACC 59.689 55.000 0.00 0.00 36.83 4.02
3468 5327 0.310854 CCCCGTGCTTCAACTTTGAC 59.689 55.000 0.00 0.00 36.83 3.18
3469 5328 0.181587 TCCCCGTGCTTCAACTTTGA 59.818 50.000 0.00 0.00 34.92 2.69
3470 5329 1.247567 ATCCCCGTGCTTCAACTTTG 58.752 50.000 0.00 0.00 0.00 2.77
3471 5330 2.304761 TCTATCCCCGTGCTTCAACTTT 59.695 45.455 0.00 0.00 0.00 2.66
3472 5331 1.906574 TCTATCCCCGTGCTTCAACTT 59.093 47.619 0.00 0.00 0.00 2.66
3473 5332 1.482593 CTCTATCCCCGTGCTTCAACT 59.517 52.381 0.00 0.00 0.00 3.16
3474 5333 1.473434 CCTCTATCCCCGTGCTTCAAC 60.473 57.143 0.00 0.00 0.00 3.18
3475 5334 0.830648 CCTCTATCCCCGTGCTTCAA 59.169 55.000 0.00 0.00 0.00 2.69
3476 5335 0.032515 TCCTCTATCCCCGTGCTTCA 60.033 55.000 0.00 0.00 0.00 3.02
3477 5336 1.120530 TTCCTCTATCCCCGTGCTTC 58.879 55.000 0.00 0.00 0.00 3.86
3478 5337 1.694696 GATTCCTCTATCCCCGTGCTT 59.305 52.381 0.00 0.00 0.00 3.91
3479 5338 1.343069 GATTCCTCTATCCCCGTGCT 58.657 55.000 0.00 0.00 0.00 4.40
3480 5339 1.048601 TGATTCCTCTATCCCCGTGC 58.951 55.000 0.00 0.00 0.00 5.34
3481 5340 2.320781 AGTGATTCCTCTATCCCCGTG 58.679 52.381 0.00 0.00 0.00 4.94
3482 5341 2.777459 AGTGATTCCTCTATCCCCGT 57.223 50.000 0.00 0.00 0.00 5.28
3483 5342 7.425224 AAATATAGTGATTCCTCTATCCCCG 57.575 40.000 0.00 0.00 32.93 5.73
3484 5343 8.826765 TCAAAATATAGTGATTCCTCTATCCCC 58.173 37.037 0.00 0.00 32.93 4.81
3489 5348 9.542462 CCGTTTCAAAATATAGTGATTCCTCTA 57.458 33.333 0.00 0.00 0.00 2.43
3490 5349 8.265055 TCCGTTTCAAAATATAGTGATTCCTCT 58.735 33.333 0.00 0.00 0.00 3.69
3491 5350 8.433421 TCCGTTTCAAAATATAGTGATTCCTC 57.567 34.615 0.00 0.00 0.00 3.71
3492 5351 7.499232 CCTCCGTTTCAAAATATAGTGATTCCT 59.501 37.037 0.00 0.00 0.00 3.36
3493 5352 7.255139 CCCTCCGTTTCAAAATATAGTGATTCC 60.255 40.741 0.00 0.00 0.00 3.01
3494 5353 7.497909 TCCCTCCGTTTCAAAATATAGTGATTC 59.502 37.037 0.00 0.00 0.00 2.52
3495 5354 7.343357 TCCCTCCGTTTCAAAATATAGTGATT 58.657 34.615 0.00 0.00 0.00 2.57
3496 5355 6.895782 TCCCTCCGTTTCAAAATATAGTGAT 58.104 36.000 0.00 0.00 0.00 3.06
3497 5356 6.070424 ACTCCCTCCGTTTCAAAATATAGTGA 60.070 38.462 0.00 0.00 0.00 3.41
3498 5357 6.113411 ACTCCCTCCGTTTCAAAATATAGTG 58.887 40.000 0.00 0.00 0.00 2.74
3499 5358 6.309389 ACTCCCTCCGTTTCAAAATATAGT 57.691 37.500 0.00 0.00 0.00 2.12
3500 5359 7.931948 ACATACTCCCTCCGTTTCAAAATATAG 59.068 37.037 0.00 0.00 0.00 1.31
3501 5360 7.798071 ACATACTCCCTCCGTTTCAAAATATA 58.202 34.615 0.00 0.00 0.00 0.86
3502 5361 6.659824 ACATACTCCCTCCGTTTCAAAATAT 58.340 36.000 0.00 0.00 0.00 1.28
3503 5362 6.057321 ACATACTCCCTCCGTTTCAAAATA 57.943 37.500 0.00 0.00 0.00 1.40
3504 5363 4.918588 ACATACTCCCTCCGTTTCAAAAT 58.081 39.130 0.00 0.00 0.00 1.82
3505 5364 4.360951 ACATACTCCCTCCGTTTCAAAA 57.639 40.909 0.00 0.00 0.00 2.44
3506 5365 4.041198 AGAACATACTCCCTCCGTTTCAAA 59.959 41.667 0.00 0.00 0.00 2.69
3507 5366 3.581332 AGAACATACTCCCTCCGTTTCAA 59.419 43.478 0.00 0.00 0.00 2.69
3508 5367 3.170717 AGAACATACTCCCTCCGTTTCA 58.829 45.455 0.00 0.00 0.00 2.69
3509 5368 3.889520 AGAACATACTCCCTCCGTTTC 57.110 47.619 0.00 0.00 0.00 2.78
3510 5369 4.635699 AAAGAACATACTCCCTCCGTTT 57.364 40.909 0.00 0.00 0.00 3.60
3511 5370 4.382793 GCTAAAGAACATACTCCCTCCGTT 60.383 45.833 0.00 0.00 0.00 4.44
3512 5371 3.132467 GCTAAAGAACATACTCCCTCCGT 59.868 47.826 0.00 0.00 0.00 4.69
3513 5372 3.385111 AGCTAAAGAACATACTCCCTCCG 59.615 47.826 0.00 0.00 0.00 4.63
3514 5373 5.104900 TCAAGCTAAAGAACATACTCCCTCC 60.105 44.000 0.00 0.00 0.00 4.30
3515 5374 5.978814 TCAAGCTAAAGAACATACTCCCTC 58.021 41.667 0.00 0.00 0.00 4.30
3516 5375 6.374417 TTCAAGCTAAAGAACATACTCCCT 57.626 37.500 0.00 0.00 0.00 4.20
3517 5376 7.051000 AGATTCAAGCTAAAGAACATACTCCC 58.949 38.462 0.00 0.00 0.00 4.30
3518 5377 8.394121 CAAGATTCAAGCTAAAGAACATACTCC 58.606 37.037 0.00 0.00 0.00 3.85
3519 5378 8.394121 CCAAGATTCAAGCTAAAGAACATACTC 58.606 37.037 0.00 0.00 0.00 2.59
3520 5379 8.103305 TCCAAGATTCAAGCTAAAGAACATACT 58.897 33.333 0.00 0.00 0.00 2.12
3521 5380 8.178313 GTCCAAGATTCAAGCTAAAGAACATAC 58.822 37.037 0.00 0.00 0.00 2.39
3544 5403 2.034685 GGAAACTGCTTTCTGGTTGTCC 59.965 50.000 0.00 0.00 36.71 4.02
3983 5886 5.663456 ACAAAATTGTGCAAGTTGATGAGT 58.337 33.333 7.16 2.03 40.49 3.41
3984 5887 6.919662 AGTACAAAATTGTGCAAGTTGATGAG 59.080 34.615 15.17 1.58 44.73 2.90
3985 5888 6.804677 AGTACAAAATTGTGCAAGTTGATGA 58.195 32.000 15.17 0.00 44.73 2.92
3986 5889 7.862372 ACTAGTACAAAATTGTGCAAGTTGATG 59.138 33.333 15.17 6.66 44.73 3.07
3987 5890 7.940850 ACTAGTACAAAATTGTGCAAGTTGAT 58.059 30.769 15.17 0.00 44.73 2.57
3988 5891 7.328277 ACTAGTACAAAATTGTGCAAGTTGA 57.672 32.000 15.17 0.00 44.73 3.18
3989 5892 8.126074 TGTACTAGTACAAAATTGTGCAAGTTG 58.874 33.333 29.20 0.00 44.73 3.16
3990 5893 8.215926 TGTACTAGTACAAAATTGTGCAAGTT 57.784 30.769 29.20 0.00 44.73 2.66
3991 5894 7.795482 TGTACTAGTACAAAATTGTGCAAGT 57.205 32.000 29.20 13.02 44.73 3.16
4011 5914 3.120782 CGTACCAACTCGAAGCTTTGTAC 59.879 47.826 13.49 6.69 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.