Multiple sequence alignment - TraesCS3D01G180800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G180800 chr3D 100.000 2429 0 0 1 2429 162877116 162874688 0.000000e+00 4486.0
1 TraesCS3D01G180800 chr3D 86.280 1086 75 36 638 1684 163115500 163114450 0.000000e+00 1112.0
2 TraesCS3D01G180800 chr3B 90.189 1060 61 25 638 1687 239895963 239894937 0.000000e+00 1341.0
3 TraesCS3D01G180800 chr3A 88.023 1027 51 21 638 1613 195190099 195189094 0.000000e+00 1149.0
4 TraesCS3D01G180800 chr3A 85.466 633 72 12 1670 2284 491182094 491181464 2.040000e-180 641.0
5 TraesCS3D01G180800 chr5A 92.196 756 46 7 1684 2429 512711713 512710961 0.000000e+00 1057.0
6 TraesCS3D01G180800 chr1A 92.053 755 49 6 1685 2429 498537801 498538554 0.000000e+00 1051.0
7 TraesCS3D01G180800 chr7B 91.921 755 50 6 1685 2429 548474873 548474120 0.000000e+00 1046.0
8 TraesCS3D01G180800 chr7B 91.041 759 56 7 1681 2429 583623802 583624558 0.000000e+00 1014.0
9 TraesCS3D01G180800 chr7B 82.857 140 23 1 370 508 122696141 122696280 9.120000e-25 124.0
10 TraesCS3D01G180800 chr7B 89.552 67 7 0 79 145 586570029 586569963 4.300000e-13 86.1
11 TraesCS3D01G180800 chr7A 91.777 754 50 7 1686 2429 576150677 576151428 0.000000e+00 1038.0
12 TraesCS3D01G180800 chr7A 91.157 769 55 8 1674 2429 167819889 167819121 0.000000e+00 1031.0
13 TraesCS3D01G180800 chr7A 91.733 750 51 6 1690 2429 658782027 658781279 0.000000e+00 1031.0
14 TraesCS3D01G180800 chr7A 83.158 95 11 4 51 145 250342414 250342503 5.570000e-12 82.4
15 TraesCS3D01G180800 chr5B 91.327 761 51 9 1680 2429 582156554 582155798 0.000000e+00 1026.0
16 TraesCS3D01G180800 chr2B 91.391 755 54 6 1685 2429 27907598 27906845 0.000000e+00 1024.0
17 TraesCS3D01G180800 chr1D 88.028 426 38 7 1685 2099 377373938 377373515 2.170000e-135 492.0
18 TraesCS3D01G180800 chr4B 81.773 203 30 4 161 357 203889668 203889467 1.930000e-36 163.0
19 TraesCS3D01G180800 chr4B 91.667 72 5 1 75 145 296293430 296293501 5.530000e-17 99.0
20 TraesCS3D01G180800 chr2D 88.889 81 7 2 67 145 578886935 578886855 5.530000e-17 99.0
21 TraesCS3D01G180800 chr2D 90.278 72 6 1 75 145 59503350 59503279 2.570000e-15 93.5
22 TraesCS3D01G180800 chr6B 89.610 77 7 1 75 150 591252178 591252254 1.990000e-16 97.1
23 TraesCS3D01G180800 chr6B 90.278 72 6 1 75 145 457171853 457171924 2.570000e-15 93.5
24 TraesCS3D01G180800 chr6B 90.278 72 6 1 75 145 491918460 491918531 2.570000e-15 93.5
25 TraesCS3D01G180800 chr6B 88.312 77 8 1 73 148 289577143 289577067 9.250000e-15 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G180800 chr3D 162874688 162877116 2428 True 4486 4486 100.000 1 2429 1 chr3D.!!$R1 2428
1 TraesCS3D01G180800 chr3D 163114450 163115500 1050 True 1112 1112 86.280 638 1684 1 chr3D.!!$R2 1046
2 TraesCS3D01G180800 chr3B 239894937 239895963 1026 True 1341 1341 90.189 638 1687 1 chr3B.!!$R1 1049
3 TraesCS3D01G180800 chr3A 195189094 195190099 1005 True 1149 1149 88.023 638 1613 1 chr3A.!!$R1 975
4 TraesCS3D01G180800 chr3A 491181464 491182094 630 True 641 641 85.466 1670 2284 1 chr3A.!!$R2 614
5 TraesCS3D01G180800 chr5A 512710961 512711713 752 True 1057 1057 92.196 1684 2429 1 chr5A.!!$R1 745
6 TraesCS3D01G180800 chr1A 498537801 498538554 753 False 1051 1051 92.053 1685 2429 1 chr1A.!!$F1 744
7 TraesCS3D01G180800 chr7B 548474120 548474873 753 True 1046 1046 91.921 1685 2429 1 chr7B.!!$R1 744
8 TraesCS3D01G180800 chr7B 583623802 583624558 756 False 1014 1014 91.041 1681 2429 1 chr7B.!!$F2 748
9 TraesCS3D01G180800 chr7A 576150677 576151428 751 False 1038 1038 91.777 1686 2429 1 chr7A.!!$F2 743
10 TraesCS3D01G180800 chr7A 167819121 167819889 768 True 1031 1031 91.157 1674 2429 1 chr7A.!!$R1 755
11 TraesCS3D01G180800 chr7A 658781279 658782027 748 True 1031 1031 91.733 1690 2429 1 chr7A.!!$R2 739
12 TraesCS3D01G180800 chr5B 582155798 582156554 756 True 1026 1026 91.327 1680 2429 1 chr5B.!!$R1 749
13 TraesCS3D01G180800 chr2B 27906845 27907598 753 True 1024 1024 91.391 1685 2429 1 chr2B.!!$R1 744

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
431 432 0.025513 GCGCTCGATCACACAATGAC 59.974 55.0 0.0 0.0 41.24 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1603 1687 1.072965 ACTATAGCAGGGCATCCAAGC 59.927 52.381 0.0 0.0 36.84 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.011540 GGGAACGTCTCATGGTCTTC 57.988 55.000 0.00 0.00 0.00 2.87
25 26 1.405661 GGGAACGTCTCATGGTCTTCC 60.406 57.143 0.00 0.00 0.00 3.46
26 27 1.630148 GAACGTCTCATGGTCTTCCG 58.370 55.000 0.00 0.00 36.30 4.30
27 28 1.201647 GAACGTCTCATGGTCTTCCGA 59.798 52.381 0.00 0.00 36.30 4.55
28 29 1.254026 ACGTCTCATGGTCTTCCGAA 58.746 50.000 0.00 0.00 36.30 4.30
29 30 1.202582 ACGTCTCATGGTCTTCCGAAG 59.797 52.381 1.30 1.30 36.30 3.79
30 31 1.202582 CGTCTCATGGTCTTCCGAAGT 59.797 52.381 8.01 0.00 36.30 3.01
31 32 2.732597 CGTCTCATGGTCTTCCGAAGTC 60.733 54.545 8.01 2.57 36.30 3.01
32 33 2.494073 GTCTCATGGTCTTCCGAAGTCT 59.506 50.000 8.01 0.00 36.30 3.24
33 34 3.056465 GTCTCATGGTCTTCCGAAGTCTT 60.056 47.826 8.01 0.00 36.30 3.01
34 35 3.193691 TCTCATGGTCTTCCGAAGTCTTC 59.806 47.826 8.01 2.18 36.30 2.87
35 36 2.897326 TCATGGTCTTCCGAAGTCTTCA 59.103 45.455 12.99 3.69 36.30 3.02
36 37 3.515502 TCATGGTCTTCCGAAGTCTTCAT 59.484 43.478 12.99 5.56 36.30 2.57
37 38 3.319137 TGGTCTTCCGAAGTCTTCATG 57.681 47.619 12.99 3.40 36.30 3.07
38 39 2.897326 TGGTCTTCCGAAGTCTTCATGA 59.103 45.455 12.99 5.67 36.30 3.07
39 40 3.323691 TGGTCTTCCGAAGTCTTCATGAA 59.676 43.478 12.99 8.12 36.30 2.57
40 41 3.929610 GGTCTTCCGAAGTCTTCATGAAG 59.070 47.826 26.56 26.56 38.52 3.02
41 42 4.561105 GTCTTCCGAAGTCTTCATGAAGT 58.439 43.478 29.80 14.96 38.41 3.01
42 43 4.991687 GTCTTCCGAAGTCTTCATGAAGTT 59.008 41.667 29.80 20.14 38.41 2.66
43 44 5.467063 GTCTTCCGAAGTCTTCATGAAGTTT 59.533 40.000 29.80 24.54 38.41 2.66
44 45 6.017852 GTCTTCCGAAGTCTTCATGAAGTTTT 60.018 38.462 29.80 24.24 38.41 2.43
45 46 5.924475 TCCGAAGTCTTCATGAAGTTTTC 57.076 39.130 29.80 28.00 39.38 2.29
46 47 5.611374 TCCGAAGTCTTCATGAAGTTTTCT 58.389 37.500 29.80 20.94 39.38 2.52
47 48 5.696724 TCCGAAGTCTTCATGAAGTTTTCTC 59.303 40.000 29.80 19.50 39.38 2.87
48 49 5.106908 CCGAAGTCTTCATGAAGTTTTCTCC 60.107 44.000 29.80 14.19 39.38 3.71
49 50 5.388890 CGAAGTCTTCATGAAGTTTTCTCCG 60.389 44.000 29.80 20.05 39.38 4.63
50 51 5.215252 AGTCTTCATGAAGTTTTCTCCGA 57.785 39.130 29.80 9.36 39.38 4.55
51 52 5.611374 AGTCTTCATGAAGTTTTCTCCGAA 58.389 37.500 29.80 8.45 39.38 4.30
52 53 6.055588 AGTCTTCATGAAGTTTTCTCCGAAA 58.944 36.000 29.80 7.97 39.38 3.46
53 54 6.712547 AGTCTTCATGAAGTTTTCTCCGAAAT 59.287 34.615 29.80 7.78 39.38 2.17
54 55 7.878127 AGTCTTCATGAAGTTTTCTCCGAAATA 59.122 33.333 29.80 7.37 39.38 1.40
55 56 7.958025 GTCTTCATGAAGTTTTCTCCGAAATAC 59.042 37.037 29.80 14.68 39.38 1.89
56 57 7.878127 TCTTCATGAAGTTTTCTCCGAAATACT 59.122 33.333 29.80 0.00 39.38 2.12
57 58 7.596749 TCATGAAGTTTTCTCCGAAATACTC 57.403 36.000 0.00 0.00 0.00 2.59
58 59 6.594159 TCATGAAGTTTTCTCCGAAATACTCC 59.406 38.462 0.00 0.00 0.00 3.85
59 60 5.243207 TGAAGTTTTCTCCGAAATACTCCC 58.757 41.667 0.00 0.00 0.00 4.30
60 61 5.012768 TGAAGTTTTCTCCGAAATACTCCCT 59.987 40.000 0.00 0.00 0.00 4.20
61 62 6.211986 TGAAGTTTTCTCCGAAATACTCCCTA 59.788 38.462 0.00 0.00 0.00 3.53
62 63 5.975282 AGTTTTCTCCGAAATACTCCCTAC 58.025 41.667 0.00 0.00 0.00 3.18
63 64 4.644103 TTTCTCCGAAATACTCCCTACG 57.356 45.455 0.00 0.00 0.00 3.51
64 65 3.287867 TCTCCGAAATACTCCCTACGT 57.712 47.619 0.00 0.00 0.00 3.57
65 66 4.422073 TCTCCGAAATACTCCCTACGTA 57.578 45.455 0.00 0.00 0.00 3.57
66 67 4.978099 TCTCCGAAATACTCCCTACGTAT 58.022 43.478 0.00 0.00 0.00 3.06
67 68 5.380043 TCTCCGAAATACTCCCTACGTATT 58.620 41.667 0.00 0.00 38.75 1.89
68 69 5.829924 TCTCCGAAATACTCCCTACGTATTT 59.170 40.000 0.00 7.62 45.31 1.40
69 70 6.998074 TCTCCGAAATACTCCCTACGTATTTA 59.002 38.462 0.00 0.00 43.68 1.40
70 71 7.173907 TCTCCGAAATACTCCCTACGTATTTAG 59.826 40.741 0.00 7.94 43.68 1.85
71 72 6.998074 TCCGAAATACTCCCTACGTATTTAGA 59.002 38.462 13.56 9.10 43.68 2.10
72 73 7.041098 TCCGAAATACTCCCTACGTATTTAGAC 60.041 40.741 13.56 2.19 43.68 2.59
73 74 7.255242 CCGAAATACTCCCTACGTATTTAGACA 60.255 40.741 13.56 0.00 43.68 3.41
74 75 8.131100 CGAAATACTCCCTACGTATTTAGACAA 58.869 37.037 0.00 0.00 43.68 3.18
75 76 9.807649 GAAATACTCCCTACGTATTTAGACAAA 57.192 33.333 0.00 0.00 43.68 2.83
77 78 9.978044 AATACTCCCTACGTATTTAGACAAATC 57.022 33.333 0.00 0.00 34.77 2.17
78 79 7.657023 ACTCCCTACGTATTTAGACAAATCT 57.343 36.000 0.00 0.00 35.88 2.40
79 80 8.757982 ACTCCCTACGTATTTAGACAAATCTA 57.242 34.615 0.00 0.00 35.88 1.98
80 81 9.193806 ACTCCCTACGTATTTAGACAAATCTAA 57.806 33.333 0.00 0.00 44.17 2.10
81 82 9.680315 CTCCCTACGTATTTAGACAAATCTAAG 57.320 37.037 0.00 0.00 45.93 2.18
82 83 9.412460 TCCCTACGTATTTAGACAAATCTAAGA 57.588 33.333 0.00 0.00 45.93 2.10
83 84 9.460906 CCCTACGTATTTAGACAAATCTAAGAC 57.539 37.037 0.00 0.83 45.93 3.01
140 141 9.722056 CTAAGATAAGAATTTTGAAACGGATGG 57.278 33.333 0.00 0.00 0.00 3.51
141 142 7.938140 AGATAAGAATTTTGAAACGGATGGA 57.062 32.000 0.00 0.00 0.00 3.41
142 143 7.989826 AGATAAGAATTTTGAAACGGATGGAG 58.010 34.615 0.00 0.00 0.00 3.86
143 144 7.611855 AGATAAGAATTTTGAAACGGATGGAGT 59.388 33.333 0.00 0.00 0.00 3.85
144 145 8.801882 ATAAGAATTTTGAAACGGATGGAGTA 57.198 30.769 0.00 0.00 0.00 2.59
145 146 6.743575 AGAATTTTGAAACGGATGGAGTAG 57.256 37.500 0.00 0.00 0.00 2.57
146 147 6.238648 AGAATTTTGAAACGGATGGAGTAGT 58.761 36.000 0.00 0.00 0.00 2.73
147 148 6.715264 AGAATTTTGAAACGGATGGAGTAGTT 59.285 34.615 0.00 0.00 0.00 2.24
148 149 5.682943 TTTTGAAACGGATGGAGTAGTTG 57.317 39.130 0.00 0.00 0.00 3.16
149 150 2.695359 TGAAACGGATGGAGTAGTTGC 58.305 47.619 0.00 0.00 0.00 4.17
150 151 2.007608 GAAACGGATGGAGTAGTTGCC 58.992 52.381 0.00 0.00 0.00 4.52
151 152 0.981183 AACGGATGGAGTAGTTGCCA 59.019 50.000 0.00 0.00 38.78 4.92
156 157 2.717639 ATGGAGTAGTTGCCATCACC 57.282 50.000 0.00 0.00 40.83 4.02
157 158 1.357137 TGGAGTAGTTGCCATCACCA 58.643 50.000 0.00 0.00 0.00 4.17
158 159 1.003118 TGGAGTAGTTGCCATCACCAC 59.997 52.381 0.00 0.00 0.00 4.16
159 160 1.003118 GGAGTAGTTGCCATCACCACA 59.997 52.381 0.00 0.00 0.00 4.17
160 161 2.552155 GGAGTAGTTGCCATCACCACAA 60.552 50.000 0.00 0.00 0.00 3.33
161 162 3.347216 GAGTAGTTGCCATCACCACAAT 58.653 45.455 0.00 0.00 0.00 2.71
162 163 3.758554 GAGTAGTTGCCATCACCACAATT 59.241 43.478 0.00 0.00 0.00 2.32
163 164 4.151883 AGTAGTTGCCATCACCACAATTT 58.848 39.130 0.00 0.00 0.00 1.82
164 165 4.588528 AGTAGTTGCCATCACCACAATTTT 59.411 37.500 0.00 0.00 0.00 1.82
165 166 3.731089 AGTTGCCATCACCACAATTTTG 58.269 40.909 0.00 0.00 0.00 2.44
166 167 3.387374 AGTTGCCATCACCACAATTTTGA 59.613 39.130 0.00 0.00 0.00 2.69
167 168 4.125703 GTTGCCATCACCACAATTTTGAA 58.874 39.130 0.00 0.00 0.00 2.69
168 169 4.412796 TGCCATCACCACAATTTTGAAA 57.587 36.364 0.00 0.00 0.00 2.69
169 170 4.774124 TGCCATCACCACAATTTTGAAAA 58.226 34.783 0.00 0.00 0.00 2.29
170 171 4.574013 TGCCATCACCACAATTTTGAAAAC 59.426 37.500 0.00 0.00 0.00 2.43
171 172 4.815846 GCCATCACCACAATTTTGAAAACT 59.184 37.500 0.00 0.00 0.00 2.66
172 173 5.988561 GCCATCACCACAATTTTGAAAACTA 59.011 36.000 0.00 0.00 0.00 2.24
173 174 6.650390 GCCATCACCACAATTTTGAAAACTAT 59.350 34.615 0.00 0.00 0.00 2.12
174 175 7.148590 GCCATCACCACAATTTTGAAAACTATC 60.149 37.037 0.00 0.00 0.00 2.08
175 176 7.062138 CCATCACCACAATTTTGAAAACTATCG 59.938 37.037 0.00 0.00 0.00 2.92
176 177 7.265647 TCACCACAATTTTGAAAACTATCGA 57.734 32.000 0.00 0.00 0.00 3.59
177 178 7.136119 TCACCACAATTTTGAAAACTATCGAC 58.864 34.615 0.00 0.00 0.00 4.20
178 179 6.086241 CACCACAATTTTGAAAACTATCGACG 59.914 38.462 0.00 0.00 0.00 5.12
179 180 6.140110 CCACAATTTTGAAAACTATCGACGT 58.860 36.000 0.00 0.00 0.00 4.34
180 181 6.086241 CCACAATTTTGAAAACTATCGACGTG 59.914 38.462 0.00 0.00 0.00 4.49
181 182 6.086241 CACAATTTTGAAAACTATCGACGTGG 59.914 38.462 0.00 0.00 0.00 4.94
182 183 3.799137 TTTGAAAACTATCGACGTGGC 57.201 42.857 0.00 0.00 0.00 5.01
183 184 2.442212 TGAAAACTATCGACGTGGCA 57.558 45.000 0.00 0.00 0.00 4.92
184 185 2.063266 TGAAAACTATCGACGTGGCAC 58.937 47.619 7.79 7.79 0.00 5.01
185 186 1.392510 GAAAACTATCGACGTGGCACC 59.607 52.381 12.86 0.00 0.00 5.01
186 187 0.734942 AAACTATCGACGTGGCACCG 60.735 55.000 12.86 11.02 0.00 4.94
187 188 1.588824 AACTATCGACGTGGCACCGA 61.589 55.000 18.69 18.69 36.72 4.69
188 189 1.359117 CTATCGACGTGGCACCGAT 59.641 57.895 26.72 26.72 44.10 4.18
189 190 0.248907 CTATCGACGTGGCACCGATT 60.249 55.000 28.03 16.58 42.23 3.34
190 191 0.173935 TATCGACGTGGCACCGATTT 59.826 50.000 28.03 14.51 42.23 2.17
191 192 0.672401 ATCGACGTGGCACCGATTTT 60.672 50.000 21.03 5.72 39.66 1.82
192 193 1.154488 CGACGTGGCACCGATTTTG 60.154 57.895 12.86 0.00 0.00 2.44
193 194 1.837538 CGACGTGGCACCGATTTTGT 61.838 55.000 12.86 1.50 0.00 2.83
194 195 0.309612 GACGTGGCACCGATTTTGTT 59.690 50.000 12.86 0.00 0.00 2.83
195 196 0.309612 ACGTGGCACCGATTTTGTTC 59.690 50.000 12.86 0.00 0.00 3.18
196 197 0.591170 CGTGGCACCGATTTTGTTCT 59.409 50.000 12.86 0.00 0.00 3.01
197 198 1.662876 CGTGGCACCGATTTTGTTCTG 60.663 52.381 12.86 0.00 0.00 3.02
198 199 0.313672 TGGCACCGATTTTGTTCTGC 59.686 50.000 0.00 0.00 0.00 4.26
199 200 0.598065 GGCACCGATTTTGTTCTGCT 59.402 50.000 0.00 0.00 0.00 4.24
200 201 1.666888 GGCACCGATTTTGTTCTGCTG 60.667 52.381 0.00 0.00 0.00 4.41
201 202 1.001378 GCACCGATTTTGTTCTGCTGT 60.001 47.619 0.00 0.00 0.00 4.40
202 203 2.653890 CACCGATTTTGTTCTGCTGTG 58.346 47.619 0.00 0.00 0.00 3.66
203 204 1.001378 ACCGATTTTGTTCTGCTGTGC 60.001 47.619 0.00 0.00 0.00 4.57
204 205 1.666888 CCGATTTTGTTCTGCTGTGCC 60.667 52.381 0.00 0.00 0.00 5.01
205 206 1.666888 CGATTTTGTTCTGCTGTGCCC 60.667 52.381 0.00 0.00 0.00 5.36
206 207 0.314935 ATTTTGTTCTGCTGTGCCCG 59.685 50.000 0.00 0.00 0.00 6.13
207 208 1.733402 TTTTGTTCTGCTGTGCCCGG 61.733 55.000 0.00 0.00 0.00 5.73
208 209 2.902423 TTTGTTCTGCTGTGCCCGGT 62.902 55.000 0.00 0.00 0.00 5.28
209 210 3.357079 GTTCTGCTGTGCCCGGTG 61.357 66.667 0.00 0.00 0.00 4.94
210 211 3.555324 TTCTGCTGTGCCCGGTGA 61.555 61.111 0.00 0.00 0.00 4.02
211 212 3.113514 TTCTGCTGTGCCCGGTGAA 62.114 57.895 0.00 0.00 0.00 3.18
212 213 3.052082 CTGCTGTGCCCGGTGAAG 61.052 66.667 0.00 0.00 0.00 3.02
215 216 2.743928 CTGTGCCCGGTGAAGCTC 60.744 66.667 0.00 0.00 0.00 4.09
216 217 4.329545 TGTGCCCGGTGAAGCTCC 62.330 66.667 0.00 0.00 0.00 4.70
222 223 4.452733 CGGTGAAGCTCCGGGTCC 62.453 72.222 0.00 0.00 43.68 4.46
223 224 3.003763 GGTGAAGCTCCGGGTCCT 61.004 66.667 0.00 0.00 0.00 3.85
224 225 2.579738 GTGAAGCTCCGGGTCCTC 59.420 66.667 0.00 0.00 0.00 3.71
225 226 2.683933 TGAAGCTCCGGGTCCTCC 60.684 66.667 0.00 0.00 0.00 4.30
226 227 2.683933 GAAGCTCCGGGTCCTCCA 60.684 66.667 0.00 0.00 34.36 3.86
227 228 2.041265 AAGCTCCGGGTCCTCCAT 59.959 61.111 0.00 0.00 34.36 3.41
228 229 2.317149 GAAGCTCCGGGTCCTCCATG 62.317 65.000 0.00 0.00 34.36 3.66
229 230 3.083997 GCTCCGGGTCCTCCATGT 61.084 66.667 0.00 0.00 34.36 3.21
230 231 1.760875 GCTCCGGGTCCTCCATGTA 60.761 63.158 0.00 0.00 34.36 2.29
231 232 1.335132 GCTCCGGGTCCTCCATGTAA 61.335 60.000 0.00 0.00 34.36 2.41
232 233 1.424638 CTCCGGGTCCTCCATGTAAT 58.575 55.000 0.00 0.00 34.36 1.89
233 234 1.344763 CTCCGGGTCCTCCATGTAATC 59.655 57.143 0.00 0.00 34.36 1.75
234 235 1.062428 TCCGGGTCCTCCATGTAATCT 60.062 52.381 0.00 0.00 34.36 2.40
235 236 1.070758 CCGGGTCCTCCATGTAATCTG 59.929 57.143 0.00 0.00 34.36 2.90
236 237 1.762957 CGGGTCCTCCATGTAATCTGT 59.237 52.381 0.00 0.00 34.36 3.41
237 238 2.963101 CGGGTCCTCCATGTAATCTGTA 59.037 50.000 0.00 0.00 34.36 2.74
238 239 3.005897 CGGGTCCTCCATGTAATCTGTAG 59.994 52.174 0.00 0.00 34.36 2.74
239 240 3.325135 GGGTCCTCCATGTAATCTGTAGG 59.675 52.174 0.00 0.00 35.00 3.18
240 241 3.244249 GGTCCTCCATGTAATCTGTAGGC 60.244 52.174 0.00 0.00 0.00 3.93
241 242 3.643792 GTCCTCCATGTAATCTGTAGGCT 59.356 47.826 0.00 0.00 0.00 4.58
242 243 4.833380 GTCCTCCATGTAATCTGTAGGCTA 59.167 45.833 0.00 0.00 0.00 3.93
243 244 5.482175 GTCCTCCATGTAATCTGTAGGCTAT 59.518 44.000 0.00 0.00 0.00 2.97
244 245 5.717178 TCCTCCATGTAATCTGTAGGCTATC 59.283 44.000 0.00 0.00 0.00 2.08
245 246 5.719085 CCTCCATGTAATCTGTAGGCTATCT 59.281 44.000 0.00 0.00 0.00 1.98
246 247 6.127479 CCTCCATGTAATCTGTAGGCTATCTC 60.127 46.154 0.00 0.00 0.00 2.75
247 248 6.556639 TCCATGTAATCTGTAGGCTATCTCT 58.443 40.000 0.00 0.00 0.00 3.10
248 249 7.699878 TCCATGTAATCTGTAGGCTATCTCTA 58.300 38.462 0.00 0.00 0.00 2.43
249 250 8.340002 TCCATGTAATCTGTAGGCTATCTCTAT 58.660 37.037 0.00 0.00 0.00 1.98
250 251 8.412456 CCATGTAATCTGTAGGCTATCTCTATG 58.588 40.741 0.00 0.00 0.00 2.23
251 252 8.965819 CATGTAATCTGTAGGCTATCTCTATGT 58.034 37.037 0.00 0.00 0.00 2.29
252 253 8.568676 TGTAATCTGTAGGCTATCTCTATGTC 57.431 38.462 0.00 0.00 0.00 3.06
253 254 7.612244 TGTAATCTGTAGGCTATCTCTATGTCC 59.388 40.741 0.00 0.00 0.00 4.02
254 255 5.584551 TCTGTAGGCTATCTCTATGTCCA 57.415 43.478 0.00 0.00 0.00 4.02
255 256 6.146140 TCTGTAGGCTATCTCTATGTCCAT 57.854 41.667 0.00 0.00 0.00 3.41
256 257 6.556639 TCTGTAGGCTATCTCTATGTCCATT 58.443 40.000 0.00 0.00 0.00 3.16
257 258 7.699878 TCTGTAGGCTATCTCTATGTCCATTA 58.300 38.462 0.00 0.00 0.00 1.90
258 259 8.340002 TCTGTAGGCTATCTCTATGTCCATTAT 58.660 37.037 0.00 0.00 0.00 1.28
259 260 9.634021 CTGTAGGCTATCTCTATGTCCATTATA 57.366 37.037 0.00 0.00 0.00 0.98
275 276 9.905713 TGTCCATTATATTAAGATAGCAATCCC 57.094 33.333 0.00 0.00 31.98 3.85
276 277 9.046296 GTCCATTATATTAAGATAGCAATCCCG 57.954 37.037 0.00 0.00 31.98 5.14
277 278 8.768397 TCCATTATATTAAGATAGCAATCCCGT 58.232 33.333 0.00 0.00 31.98 5.28
278 279 8.830580 CCATTATATTAAGATAGCAATCCCGTG 58.169 37.037 0.00 0.00 31.98 4.94
279 280 8.830580 CATTATATTAAGATAGCAATCCCGTGG 58.169 37.037 0.00 0.00 31.98 4.94
280 281 2.543777 TAAGATAGCAATCCCGTGGC 57.456 50.000 0.00 0.00 31.98 5.01
281 282 0.839946 AAGATAGCAATCCCGTGGCT 59.160 50.000 0.00 0.00 41.51 4.75
282 283 0.839946 AGATAGCAATCCCGTGGCTT 59.160 50.000 0.00 0.00 39.01 4.35
283 284 1.212935 AGATAGCAATCCCGTGGCTTT 59.787 47.619 0.00 0.00 39.01 3.51
284 285 2.438021 AGATAGCAATCCCGTGGCTTTA 59.562 45.455 0.00 0.00 39.01 1.85
285 286 2.325583 TAGCAATCCCGTGGCTTTAG 57.674 50.000 0.00 0.00 39.01 1.85
286 287 1.032114 AGCAATCCCGTGGCTTTAGC 61.032 55.000 0.00 0.00 41.14 3.09
287 288 1.032114 GCAATCCCGTGGCTTTAGCT 61.032 55.000 1.26 0.00 41.70 3.32
288 289 1.017387 CAATCCCGTGGCTTTAGCTC 58.983 55.000 0.00 0.00 41.70 4.09
289 290 0.618458 AATCCCGTGGCTTTAGCTCA 59.382 50.000 0.00 0.00 41.70 4.26
290 291 0.839946 ATCCCGTGGCTTTAGCTCAT 59.160 50.000 0.00 0.00 41.70 2.90
291 292 0.107703 TCCCGTGGCTTTAGCTCATG 60.108 55.000 0.00 4.06 41.70 3.07
292 293 1.718757 CCCGTGGCTTTAGCTCATGC 61.719 60.000 0.00 0.00 41.70 4.06
293 294 1.718757 CCGTGGCTTTAGCTCATGCC 61.719 60.000 16.02 16.02 45.10 4.40
295 296 4.225497 GGCTTTAGCTCATGCCGT 57.775 55.556 8.88 0.00 41.70 5.68
296 297 1.723870 GGCTTTAGCTCATGCCGTG 59.276 57.895 8.88 0.00 41.70 4.94
297 298 0.744414 GGCTTTAGCTCATGCCGTGA 60.744 55.000 8.88 0.00 41.70 4.35
298 299 0.375106 GCTTTAGCTCATGCCGTGAC 59.625 55.000 0.00 0.00 40.80 3.67
299 300 1.725641 CTTTAGCTCATGCCGTGACA 58.274 50.000 0.00 0.00 40.80 3.58
300 301 1.394917 CTTTAGCTCATGCCGTGACAC 59.605 52.381 0.00 0.00 40.80 3.67
301 302 0.735978 TTAGCTCATGCCGTGACACG 60.736 55.000 21.02 21.02 42.11 4.49
302 303 4.152625 GCTCATGCCGTGACACGC 62.153 66.667 22.46 17.21 40.91 5.34
303 304 2.738139 CTCATGCCGTGACACGCA 60.738 61.111 22.46 21.83 40.91 5.24
304 305 2.280457 TCATGCCGTGACACGCAA 60.280 55.556 22.46 12.47 40.91 4.85
305 306 1.840630 CTCATGCCGTGACACGCAAA 61.841 55.000 22.46 14.02 40.91 3.68
306 307 1.725625 CATGCCGTGACACGCAAAC 60.726 57.895 22.46 11.32 40.91 2.93
307 308 2.903547 ATGCCGTGACACGCAAACC 61.904 57.895 22.46 7.94 40.91 3.27
308 309 3.578272 GCCGTGACACGCAAACCA 61.578 61.111 22.46 0.00 40.91 3.67
309 310 2.326550 CCGTGACACGCAAACCAC 59.673 61.111 22.46 0.00 40.91 4.16
310 311 2.177580 CCGTGACACGCAAACCACT 61.178 57.895 22.46 0.00 40.91 4.00
311 312 1.711060 CCGTGACACGCAAACCACTT 61.711 55.000 22.46 0.00 40.91 3.16
312 313 0.931702 CGTGACACGCAAACCACTTA 59.068 50.000 16.06 0.00 33.65 2.24
313 314 1.328069 CGTGACACGCAAACCACTTAA 59.672 47.619 16.06 0.00 33.65 1.85
314 315 2.711885 GTGACACGCAAACCACTTAAC 58.288 47.619 0.00 0.00 0.00 2.01
315 316 2.096174 GTGACACGCAAACCACTTAACA 59.904 45.455 0.00 0.00 0.00 2.41
316 317 2.946329 TGACACGCAAACCACTTAACAT 59.054 40.909 0.00 0.00 0.00 2.71
317 318 3.378742 TGACACGCAAACCACTTAACATT 59.621 39.130 0.00 0.00 0.00 2.71
318 319 4.575236 TGACACGCAAACCACTTAACATTA 59.425 37.500 0.00 0.00 0.00 1.90
319 320 5.239744 TGACACGCAAACCACTTAACATTAT 59.760 36.000 0.00 0.00 0.00 1.28
320 321 6.427242 TGACACGCAAACCACTTAACATTATA 59.573 34.615 0.00 0.00 0.00 0.98
321 322 7.041303 TGACACGCAAACCACTTAACATTATAA 60.041 33.333 0.00 0.00 0.00 0.98
322 323 7.079475 ACACGCAAACCACTTAACATTATAAC 58.921 34.615 0.00 0.00 0.00 1.89
323 324 7.078851 CACGCAAACCACTTAACATTATAACA 58.921 34.615 0.00 0.00 0.00 2.41
324 325 7.753132 CACGCAAACCACTTAACATTATAACAT 59.247 33.333 0.00 0.00 0.00 2.71
325 326 8.948145 ACGCAAACCACTTAACATTATAACATA 58.052 29.630 0.00 0.00 0.00 2.29
326 327 9.944663 CGCAAACCACTTAACATTATAACATAT 57.055 29.630 0.00 0.00 0.00 1.78
359 360 9.453572 TTCATATATGAACTCATTCTTATGGCC 57.546 33.333 21.67 0.00 41.51 5.36
360 361 8.605065 TCATATATGAACTCATTCTTATGGCCA 58.395 33.333 8.56 8.56 36.41 5.36
361 362 9.234827 CATATATGAACTCATTCTTATGGCCAA 57.765 33.333 10.96 0.00 36.41 4.52
362 363 9.812347 ATATATGAACTCATTCTTATGGCCAAA 57.188 29.630 10.96 0.00 36.41 3.28
363 364 5.902613 TGAACTCATTCTTATGGCCAAAG 57.097 39.130 10.96 15.01 35.69 2.77
364 365 5.569355 TGAACTCATTCTTATGGCCAAAGA 58.431 37.500 10.96 17.15 35.69 2.52
365 366 5.649395 TGAACTCATTCTTATGGCCAAAGAG 59.351 40.000 21.65 14.67 34.59 2.85
366 367 4.530875 ACTCATTCTTATGGCCAAAGAGG 58.469 43.478 21.65 18.83 41.84 3.69
367 368 8.338175 GAACTCATTCTTATGGCCAAAGAGGC 62.338 46.154 21.65 0.00 46.34 4.70
375 376 3.655481 CCAAAGAGGCCACGTGAC 58.345 61.111 19.30 4.79 0.00 3.67
376 377 1.966451 CCAAAGAGGCCACGTGACC 60.966 63.158 19.30 16.46 0.00 4.02
377 378 2.030562 AAAGAGGCCACGTGACCG 59.969 61.111 19.30 0.72 40.83 4.79
378 379 4.681978 AAGAGGCCACGTGACCGC 62.682 66.667 19.30 17.84 37.70 5.68
395 396 3.124921 CGTCCCGGCAATGACCAC 61.125 66.667 0.00 0.00 0.00 4.16
396 397 2.033448 GTCCCGGCAATGACCACA 59.967 61.111 0.00 0.00 0.00 4.17
397 398 1.602323 GTCCCGGCAATGACCACAA 60.602 57.895 0.00 0.00 0.00 3.33
398 399 1.303236 TCCCGGCAATGACCACAAG 60.303 57.895 0.00 0.00 0.00 3.16
399 400 2.568090 CCGGCAATGACCACAAGC 59.432 61.111 0.00 0.00 0.00 4.01
400 401 1.973281 CCGGCAATGACCACAAGCT 60.973 57.895 0.00 0.00 33.65 3.74
401 402 1.503542 CGGCAATGACCACAAGCTC 59.496 57.895 0.00 0.00 33.65 4.09
402 403 0.957395 CGGCAATGACCACAAGCTCT 60.957 55.000 0.00 0.00 33.65 4.09
403 404 0.524862 GGCAATGACCACAAGCTCTG 59.475 55.000 0.00 0.00 33.65 3.35
404 405 1.527034 GCAATGACCACAAGCTCTGA 58.473 50.000 0.00 0.00 0.00 3.27
405 406 1.198637 GCAATGACCACAAGCTCTGAC 59.801 52.381 0.00 0.00 0.00 3.51
406 407 1.462283 CAATGACCACAAGCTCTGACG 59.538 52.381 0.00 0.00 0.00 4.35
407 408 0.036952 ATGACCACAAGCTCTGACGG 60.037 55.000 0.00 0.00 0.00 4.79
408 409 1.374758 GACCACAAGCTCTGACGGG 60.375 63.158 0.00 0.00 0.00 5.28
409 410 2.046892 CCACAAGCTCTGACGGGG 60.047 66.667 0.00 0.00 0.00 5.73
410 411 2.743928 CACAAGCTCTGACGGGGC 60.744 66.667 0.00 0.00 0.00 5.80
411 412 3.241530 ACAAGCTCTGACGGGGCA 61.242 61.111 9.29 0.00 0.00 5.36
412 413 2.435586 CAAGCTCTGACGGGGCAG 60.436 66.667 9.29 0.00 37.24 4.85
413 414 4.400961 AAGCTCTGACGGGGCAGC 62.401 66.667 9.29 0.00 35.86 5.25
424 425 4.819761 GGGCAGCGCTCGATCACA 62.820 66.667 7.13 0.00 0.00 3.58
425 426 3.558411 GGCAGCGCTCGATCACAC 61.558 66.667 7.13 0.00 0.00 3.82
426 427 2.810887 GCAGCGCTCGATCACACA 60.811 61.111 7.13 0.00 0.00 3.72
427 428 2.382746 GCAGCGCTCGATCACACAA 61.383 57.895 7.13 0.00 0.00 3.33
428 429 1.699656 GCAGCGCTCGATCACACAAT 61.700 55.000 7.13 0.00 0.00 2.71
429 430 0.025898 CAGCGCTCGATCACACAATG 59.974 55.000 7.13 0.00 0.00 2.82
430 431 0.108662 AGCGCTCGATCACACAATGA 60.109 50.000 2.64 0.00 43.13 2.57
431 432 0.025513 GCGCTCGATCACACAATGAC 59.974 55.000 0.00 0.00 41.24 3.06
432 433 0.295763 CGCTCGATCACACAATGACG 59.704 55.000 0.00 0.00 41.24 4.35
433 434 1.629013 GCTCGATCACACAATGACGA 58.371 50.000 0.00 0.00 41.24 4.20
434 435 1.321743 GCTCGATCACACAATGACGAC 59.678 52.381 0.00 0.00 41.24 4.34
435 436 1.920574 CTCGATCACACAATGACGACC 59.079 52.381 0.00 0.00 41.24 4.79
436 437 0.999406 CGATCACACAATGACGACCC 59.001 55.000 0.00 0.00 41.24 4.46
437 438 0.999406 GATCACACAATGACGACCCG 59.001 55.000 0.00 0.00 41.24 5.28
438 439 0.606096 ATCACACAATGACGACCCGA 59.394 50.000 0.00 0.00 41.24 5.14
439 440 0.319211 TCACACAATGACGACCCGAC 60.319 55.000 0.00 0.00 29.99 4.79
440 441 0.598942 CACACAATGACGACCCGACA 60.599 55.000 0.00 0.00 35.99 4.35
441 442 0.319555 ACACAATGACGACCCGACAG 60.320 55.000 0.00 0.00 35.01 3.51
442 443 1.374252 ACAATGACGACCCGACAGC 60.374 57.895 0.00 0.00 35.01 4.40
443 444 2.100631 CAATGACGACCCGACAGCC 61.101 63.158 0.00 0.00 35.01 4.85
444 445 2.579657 AATGACGACCCGACAGCCA 61.580 57.895 0.00 0.00 35.01 4.75
445 446 1.899437 AATGACGACCCGACAGCCAT 61.899 55.000 0.00 0.00 35.01 4.40
446 447 2.509336 GACGACCCGACAGCCATG 60.509 66.667 0.00 0.00 0.00 3.66
447 448 4.082523 ACGACCCGACAGCCATGG 62.083 66.667 7.63 7.63 0.00 3.66
448 449 4.082523 CGACCCGACAGCCATGGT 62.083 66.667 14.67 0.00 0.00 3.55
449 450 2.436646 GACCCGACAGCCATGGTG 60.437 66.667 14.67 12.72 37.06 4.17
450 451 2.927856 ACCCGACAGCCATGGTGA 60.928 61.111 14.67 0.00 34.87 4.02
451 452 2.257409 GACCCGACAGCCATGGTGAT 62.257 60.000 14.67 0.00 34.87 3.06
452 453 1.820906 CCCGACAGCCATGGTGATG 60.821 63.158 14.67 12.44 34.87 3.07
453 454 2.475466 CCGACAGCCATGGTGATGC 61.475 63.158 14.67 0.00 34.87 3.91
454 455 2.475466 CGACAGCCATGGTGATGCC 61.475 63.158 14.67 1.87 34.87 4.40
455 456 2.043652 ACAGCCATGGTGATGCCC 60.044 61.111 14.67 0.00 34.87 5.36
456 457 2.836360 CAGCCATGGTGATGCCCC 60.836 66.667 14.67 0.00 36.04 5.80
457 458 4.511246 AGCCATGGTGATGCCCCG 62.511 66.667 14.67 0.00 36.04 5.73
508 509 4.742201 CCACACGCCAGGGAGACG 62.742 72.222 0.00 0.00 0.00 4.18
531 532 4.457496 CTGCATCCAGGCGACGGT 62.457 66.667 0.00 0.00 35.38 4.83
532 533 4.758251 TGCATCCAGGCGACGGTG 62.758 66.667 0.00 0.00 36.28 4.94
533 534 4.451150 GCATCCAGGCGACGGTGA 62.451 66.667 0.00 0.00 0.00 4.02
534 535 2.509336 CATCCAGGCGACGGTGAC 60.509 66.667 0.00 0.00 0.00 3.67
535 536 3.771160 ATCCAGGCGACGGTGACC 61.771 66.667 0.00 0.00 0.00 4.02
553 554 4.531912 CGCGCTGCATCCAAGCTG 62.532 66.667 5.56 0.00 36.65 4.24
554 555 3.129502 GCGCTGCATCCAAGCTGA 61.130 61.111 0.00 0.00 35.73 4.26
555 556 2.693762 GCGCTGCATCCAAGCTGAA 61.694 57.895 0.00 0.00 35.73 3.02
556 557 1.878070 CGCTGCATCCAAGCTGAAA 59.122 52.632 0.00 0.00 35.73 2.69
557 558 0.241749 CGCTGCATCCAAGCTGAAAA 59.758 50.000 0.00 0.00 35.73 2.29
558 559 1.336148 CGCTGCATCCAAGCTGAAAAA 60.336 47.619 0.00 0.00 35.73 1.94
559 560 2.673043 CGCTGCATCCAAGCTGAAAAAT 60.673 45.455 0.00 0.00 35.73 1.82
560 561 3.427909 CGCTGCATCCAAGCTGAAAAATA 60.428 43.478 0.00 0.00 35.73 1.40
561 562 4.497300 GCTGCATCCAAGCTGAAAAATAA 58.503 39.130 0.00 0.00 35.73 1.40
562 563 5.114081 GCTGCATCCAAGCTGAAAAATAAT 58.886 37.500 0.00 0.00 35.73 1.28
563 564 5.583457 GCTGCATCCAAGCTGAAAAATAATT 59.417 36.000 0.00 0.00 35.73 1.40
564 565 6.093082 GCTGCATCCAAGCTGAAAAATAATTT 59.907 34.615 0.00 0.00 35.73 1.82
565 566 7.361457 GCTGCATCCAAGCTGAAAAATAATTTT 60.361 33.333 0.00 0.00 37.13 1.82
566 567 9.153721 CTGCATCCAAGCTGAAAAATAATTTTA 57.846 29.630 0.00 0.00 35.74 1.52
567 568 8.934825 TGCATCCAAGCTGAAAAATAATTTTAC 58.065 29.630 0.00 0.00 35.74 2.01
568 569 9.154847 GCATCCAAGCTGAAAAATAATTTTACT 57.845 29.630 0.00 0.00 38.83 2.24
570 571 8.532977 TCCAAGCTGAAAAATAATTTTACTGC 57.467 30.769 0.00 0.00 38.83 4.40
571 572 7.328249 TCCAAGCTGAAAAATAATTTTACTGCG 59.672 33.333 0.00 0.00 38.83 5.18
572 573 6.632171 AGCTGAAAAATAATTTTACTGCGC 57.368 33.333 0.00 0.00 38.83 6.09
573 574 6.155827 AGCTGAAAAATAATTTTACTGCGCA 58.844 32.000 10.98 10.98 38.83 6.09
574 575 6.089417 AGCTGAAAAATAATTTTACTGCGCAC 59.911 34.615 5.66 0.00 38.83 5.34
575 576 6.669741 GCTGAAAAATAATTTTACTGCGCACC 60.670 38.462 5.66 0.00 38.83 5.01
576 577 6.216569 TGAAAAATAATTTTACTGCGCACCA 58.783 32.000 5.66 0.00 38.83 4.17
577 578 6.701841 TGAAAAATAATTTTACTGCGCACCAA 59.298 30.769 5.66 0.00 38.83 3.67
578 579 7.224753 TGAAAAATAATTTTACTGCGCACCAAA 59.775 29.630 5.66 6.79 38.83 3.28
579 580 6.460664 AAATAATTTTACTGCGCACCAAAC 57.539 33.333 5.66 0.00 0.00 2.93
580 581 2.432206 ATTTTACTGCGCACCAAACC 57.568 45.000 5.66 0.00 0.00 3.27
581 582 0.029567 TTTTACTGCGCACCAAACCG 59.970 50.000 5.66 0.00 0.00 4.44
582 583 0.814410 TTTACTGCGCACCAAACCGA 60.814 50.000 5.66 0.00 0.00 4.69
583 584 1.225376 TTACTGCGCACCAAACCGAG 61.225 55.000 5.66 0.00 0.00 4.63
584 585 2.089887 TACTGCGCACCAAACCGAGA 62.090 55.000 5.66 0.00 0.00 4.04
585 586 2.203084 TGCGCACCAAACCGAGAA 60.203 55.556 5.66 0.00 0.00 2.87
586 587 2.175184 CTGCGCACCAAACCGAGAAG 62.175 60.000 5.66 0.00 0.00 2.85
587 588 1.959226 GCGCACCAAACCGAGAAGA 60.959 57.895 0.30 0.00 0.00 2.87
588 589 1.901650 GCGCACCAAACCGAGAAGAG 61.902 60.000 0.30 0.00 0.00 2.85
589 590 1.869690 GCACCAAACCGAGAAGAGC 59.130 57.895 0.00 0.00 0.00 4.09
590 591 0.884704 GCACCAAACCGAGAAGAGCA 60.885 55.000 0.00 0.00 0.00 4.26
591 592 1.593196 CACCAAACCGAGAAGAGCAA 58.407 50.000 0.00 0.00 0.00 3.91
592 593 1.946768 CACCAAACCGAGAAGAGCAAA 59.053 47.619 0.00 0.00 0.00 3.68
593 594 2.031682 CACCAAACCGAGAAGAGCAAAG 60.032 50.000 0.00 0.00 0.00 2.77
594 595 1.537202 CCAAACCGAGAAGAGCAAAGG 59.463 52.381 0.00 0.00 0.00 3.11
595 596 1.068954 CAAACCGAGAAGAGCAAAGGC 60.069 52.381 0.00 0.00 41.61 4.35
596 597 0.108585 AACCGAGAAGAGCAAAGGCA 59.891 50.000 0.00 0.00 44.61 4.75
597 598 0.321122 ACCGAGAAGAGCAAAGGCAG 60.321 55.000 0.00 0.00 44.61 4.85
598 599 1.642952 CCGAGAAGAGCAAAGGCAGC 61.643 60.000 0.00 0.00 44.61 5.25
599 600 0.673022 CGAGAAGAGCAAAGGCAGCT 60.673 55.000 0.00 0.00 46.82 4.24
600 601 1.532523 GAGAAGAGCAAAGGCAGCTT 58.467 50.000 0.00 0.00 43.58 3.74
601 602 1.468127 GAGAAGAGCAAAGGCAGCTTC 59.532 52.381 11.74 11.74 45.86 3.86
602 603 0.167689 GAAGAGCAAAGGCAGCTTCG 59.832 55.000 0.00 0.00 43.58 3.79
603 604 1.860484 AAGAGCAAAGGCAGCTTCGC 61.860 55.000 0.00 0.00 43.58 4.70
610 611 4.090057 GGCAGCTTCGCCGTTCAC 62.090 66.667 0.00 0.00 43.52 3.18
611 612 3.345808 GCAGCTTCGCCGTTCACA 61.346 61.111 0.00 0.00 0.00 3.58
612 613 2.892334 GCAGCTTCGCCGTTCACAA 61.892 57.895 0.00 0.00 0.00 3.33
613 614 1.082756 CAGCTTCGCCGTTCACAAC 60.083 57.895 0.00 0.00 0.00 3.32
627 628 3.326733 TCACAACGAAACAAACATCCG 57.673 42.857 0.00 0.00 0.00 4.18
628 629 2.937149 TCACAACGAAACAAACATCCGA 59.063 40.909 0.00 0.00 0.00 4.55
629 630 3.374367 TCACAACGAAACAAACATCCGAA 59.626 39.130 0.00 0.00 0.00 4.30
630 631 3.480668 CACAACGAAACAAACATCCGAAC 59.519 43.478 0.00 0.00 0.00 3.95
631 632 3.127203 ACAACGAAACAAACATCCGAACA 59.873 39.130 0.00 0.00 0.00 3.18
632 633 3.602390 ACGAAACAAACATCCGAACAG 57.398 42.857 0.00 0.00 0.00 3.16
633 634 3.199677 ACGAAACAAACATCCGAACAGA 58.800 40.909 0.00 0.00 0.00 3.41
634 635 3.623960 ACGAAACAAACATCCGAACAGAA 59.376 39.130 0.00 0.00 0.00 3.02
635 636 4.095185 ACGAAACAAACATCCGAACAGAAA 59.905 37.500 0.00 0.00 0.00 2.52
636 637 5.031578 CGAAACAAACATCCGAACAGAAAA 58.968 37.500 0.00 0.00 0.00 2.29
698 699 6.783708 AGTCCAAATTGTCACCAACTTTTA 57.216 33.333 0.00 0.00 32.26 1.52
699 700 7.176589 AGTCCAAATTGTCACCAACTTTTAA 57.823 32.000 0.00 0.00 32.26 1.52
700 701 7.791029 AGTCCAAATTGTCACCAACTTTTAAT 58.209 30.769 0.00 0.00 32.26 1.40
701 702 8.919145 AGTCCAAATTGTCACCAACTTTTAATA 58.081 29.630 0.00 0.00 32.26 0.98
702 703 9.705290 GTCCAAATTGTCACCAACTTTTAATAT 57.295 29.630 0.00 0.00 32.26 1.28
740 742 2.182791 CTCGCTGGCTCATGTCGT 59.817 61.111 0.00 0.00 0.00 4.34
822 849 1.005394 GGAAGGAAGCGACGAACCA 60.005 57.895 0.00 0.00 0.00 3.67
844 871 3.508840 CGCCATTTCCTGCGTCCC 61.509 66.667 0.00 0.00 45.43 4.46
947 974 0.253894 GGCTCTTTTTACCCCGCCTA 59.746 55.000 0.00 0.00 34.80 3.93
959 987 4.528039 CGCCTACCCCTCCCCGTA 62.528 72.222 0.00 0.00 0.00 4.02
970 998 2.510800 CCCTCCCCGTATCCCTTTAAAA 59.489 50.000 0.00 0.00 0.00 1.52
994 1022 2.124693 CCCTGGCCTCTCTCTCGTC 61.125 68.421 3.32 0.00 0.00 4.20
1047 1087 1.376424 GGAGCAGTAGCAGCAGCAA 60.376 57.895 3.17 0.00 45.49 3.91
1076 1119 2.835431 CCTCCAGCCGTCCGATCT 60.835 66.667 0.00 0.00 0.00 2.75
1256 1299 2.685380 CAGGGAGGCCGAGAAGGT 60.685 66.667 0.00 0.00 43.70 3.50
1382 1425 3.142838 GACCTACGCACGGGCCTA 61.143 66.667 2.82 0.00 36.38 3.93
1438 1483 4.499019 CCATGGAAAACAAAACTGCTACGT 60.499 41.667 5.56 0.00 0.00 3.57
1464 1518 3.394836 GAGGGAAGAGGCAGGCGT 61.395 66.667 0.00 0.00 0.00 5.68
1550 1620 2.556782 CCTATACTACGGGGGAGATGCA 60.557 54.545 0.00 0.00 0.00 3.96
1557 1627 4.201122 GGGGAGATGCAGCCTGGG 62.201 72.222 0.00 0.00 0.00 4.45
1563 1633 0.610232 AGATGCAGCCTGGGTGTTTC 60.610 55.000 25.22 20.61 33.19 2.78
1564 1634 1.598701 GATGCAGCCTGGGTGTTTCC 61.599 60.000 25.22 10.52 33.19 3.13
1737 1821 9.407380 TGCCTCATCTATTAATTAAGCAGAAAA 57.593 29.630 13.43 6.70 0.00 2.29
1804 1901 3.640967 GAGCCCACTCTCATAGACTGAAT 59.359 47.826 0.00 0.00 40.03 2.57
2054 2154 0.997196 GAACCGACTATCGCAACCAC 59.003 55.000 0.00 0.00 38.82 4.16
2095 2196 0.752743 CCCACCATCATCGTTGCCAT 60.753 55.000 0.00 0.00 0.00 4.40
2107 2208 2.766263 TCGTTGCCATAGAAGTCTGGAT 59.234 45.455 0.00 0.00 34.24 3.41
2123 2224 1.065199 TGGATGCCACAGTGATTCTCC 60.065 52.381 0.62 3.53 0.00 3.71
2150 2251 4.082523 CGCCCCGACATCCACTGT 62.083 66.667 0.00 0.00 42.15 3.55
2309 2410 1.666553 GAACGTCGCACCACATCCA 60.667 57.895 0.00 0.00 0.00 3.41
2316 2417 4.033776 CACCACATCCAGGGCCGT 62.034 66.667 0.00 0.00 0.00 5.68
2414 2516 2.713531 ATTGCCACCCAAGCGAAGGT 62.714 55.000 0.00 0.00 44.60 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.519455 CATGAGACGTTCCCGGAGC 60.519 63.158 0.73 0.00 38.78 4.70
1 2 1.141881 CCATGAGACGTTCCCGGAG 59.858 63.158 0.73 0.00 38.78 4.63
3 4 1.153628 GACCATGAGACGTTCCCGG 60.154 63.158 0.00 0.00 38.78 5.73
4 5 0.246635 AAGACCATGAGACGTTCCCG 59.753 55.000 0.00 0.00 40.83 5.14
5 6 1.405661 GGAAGACCATGAGACGTTCCC 60.406 57.143 0.00 0.00 35.97 3.97
6 7 1.736032 CGGAAGACCATGAGACGTTCC 60.736 57.143 0.00 0.00 35.59 3.62
9 10 1.202582 CTTCGGAAGACCATGAGACGT 59.797 52.381 12.40 0.00 41.84 4.34
10 11 1.202582 ACTTCGGAAGACCATGAGACG 59.797 52.381 23.74 0.00 41.84 4.18
11 12 2.494073 AGACTTCGGAAGACCATGAGAC 59.506 50.000 23.74 4.34 41.84 3.36
13 14 3.056536 TGAAGACTTCGGAAGACCATGAG 60.057 47.826 23.74 0.00 41.84 2.90
14 15 2.897326 TGAAGACTTCGGAAGACCATGA 59.103 45.455 23.74 2.19 41.84 3.07
15 16 3.319137 TGAAGACTTCGGAAGACCATG 57.681 47.619 23.74 0.00 41.84 3.66
16 17 3.515502 TCATGAAGACTTCGGAAGACCAT 59.484 43.478 23.74 13.64 41.84 3.55
17 18 2.897326 TCATGAAGACTTCGGAAGACCA 59.103 45.455 23.74 12.09 41.84 4.02
18 19 3.594603 TCATGAAGACTTCGGAAGACC 57.405 47.619 23.74 14.14 41.84 3.85
19 20 4.561105 ACTTCATGAAGACTTCGGAAGAC 58.439 43.478 33.66 17.37 41.94 3.01
20 21 4.873746 ACTTCATGAAGACTTCGGAAGA 57.126 40.909 33.66 18.73 41.94 2.87
21 22 5.931441 AAACTTCATGAAGACTTCGGAAG 57.069 39.130 36.15 29.43 43.49 3.46
22 23 6.055588 AGAAAACTTCATGAAGACTTCGGAA 58.944 36.000 36.15 16.62 40.79 4.30
23 24 5.611374 AGAAAACTTCATGAAGACTTCGGA 58.389 37.500 36.15 7.83 40.79 4.55
24 25 5.106908 GGAGAAAACTTCATGAAGACTTCGG 60.107 44.000 36.15 13.83 40.79 4.30
25 26 5.388890 CGGAGAAAACTTCATGAAGACTTCG 60.389 44.000 36.15 29.53 40.79 3.79
26 27 5.696724 TCGGAGAAAACTTCATGAAGACTTC 59.303 40.000 36.15 31.34 40.79 3.01
27 28 5.611374 TCGGAGAAAACTTCATGAAGACTT 58.389 37.500 36.15 27.05 40.79 3.01
28 29 5.215252 TCGGAGAAAACTTCATGAAGACT 57.785 39.130 36.15 26.61 40.79 3.24
29 30 5.924475 TTCGGAGAAAACTTCATGAAGAC 57.076 39.130 36.15 23.37 45.90 3.01
30 31 7.878127 AGTATTTCGGAGAAAACTTCATGAAGA 59.122 33.333 36.15 13.83 45.90 2.87
31 32 8.034058 AGTATTTCGGAGAAAACTTCATGAAG 57.966 34.615 29.74 29.74 45.90 3.02
32 33 7.119262 GGAGTATTTCGGAGAAAACTTCATGAA 59.881 37.037 8.12 8.12 45.90 2.57
33 34 6.594159 GGAGTATTTCGGAGAAAACTTCATGA 59.406 38.462 0.00 0.00 45.90 3.07
34 35 6.183360 GGGAGTATTTCGGAGAAAACTTCATG 60.183 42.308 0.00 0.00 45.90 3.07
35 36 5.880887 GGGAGTATTTCGGAGAAAACTTCAT 59.119 40.000 0.00 0.00 45.90 2.57
36 37 5.012768 AGGGAGTATTTCGGAGAAAACTTCA 59.987 40.000 0.00 0.00 45.90 3.02
37 38 5.489249 AGGGAGTATTTCGGAGAAAACTTC 58.511 41.667 0.00 4.23 45.90 3.01
38 39 5.500546 AGGGAGTATTTCGGAGAAAACTT 57.499 39.130 0.00 0.00 45.90 2.66
39 40 5.393896 CGTAGGGAGTATTTCGGAGAAAACT 60.394 44.000 0.00 5.10 45.90 2.66
40 41 4.802563 CGTAGGGAGTATTTCGGAGAAAAC 59.197 45.833 0.00 0.94 45.90 2.43
41 42 4.463891 ACGTAGGGAGTATTTCGGAGAAAA 59.536 41.667 0.00 0.00 45.90 2.29
42 43 4.019174 ACGTAGGGAGTATTTCGGAGAAA 58.981 43.478 0.00 0.00 45.90 2.52
43 44 3.624777 ACGTAGGGAGTATTTCGGAGAA 58.375 45.455 0.00 0.00 45.90 2.87
44 45 3.287867 ACGTAGGGAGTATTTCGGAGA 57.712 47.619 0.00 0.00 0.00 3.71
45 46 5.702349 AATACGTAGGGAGTATTTCGGAG 57.298 43.478 0.08 0.00 40.65 4.63
46 47 6.998074 TCTAAATACGTAGGGAGTATTTCGGA 59.002 38.462 14.96 12.33 45.99 4.55
47 48 7.080724 GTCTAAATACGTAGGGAGTATTTCGG 58.919 42.308 14.96 10.79 45.99 4.30
48 49 7.642669 TGTCTAAATACGTAGGGAGTATTTCG 58.357 38.462 14.96 10.69 45.99 3.46
49 50 9.807649 TTTGTCTAAATACGTAGGGAGTATTTC 57.192 33.333 14.96 5.34 45.99 2.17
51 52 9.978044 GATTTGTCTAAATACGTAGGGAGTATT 57.022 33.333 0.08 0.00 44.04 1.89
52 53 9.364653 AGATTTGTCTAAATACGTAGGGAGTAT 57.635 33.333 0.08 0.00 36.66 2.12
53 54 8.757982 AGATTTGTCTAAATACGTAGGGAGTA 57.242 34.615 0.08 0.00 36.66 2.59
54 55 7.657023 AGATTTGTCTAAATACGTAGGGAGT 57.343 36.000 0.08 0.00 36.66 3.85
55 56 9.680315 CTTAGATTTGTCTAAATACGTAGGGAG 57.320 37.037 0.08 0.00 36.66 4.30
56 57 9.412460 TCTTAGATTTGTCTAAATACGTAGGGA 57.588 33.333 0.08 0.00 36.66 4.20
57 58 9.460906 GTCTTAGATTTGTCTAAATACGTAGGG 57.539 37.037 0.08 0.00 36.66 3.53
114 115 9.722056 CCATCCGTTTCAAAATTCTTATCTTAG 57.278 33.333 0.00 0.00 0.00 2.18
115 116 9.456147 TCCATCCGTTTCAAAATTCTTATCTTA 57.544 29.630 0.00 0.00 0.00 2.10
116 117 8.348285 TCCATCCGTTTCAAAATTCTTATCTT 57.652 30.769 0.00 0.00 0.00 2.40
117 118 7.611855 ACTCCATCCGTTTCAAAATTCTTATCT 59.388 33.333 0.00 0.00 0.00 1.98
118 119 7.762382 ACTCCATCCGTTTCAAAATTCTTATC 58.238 34.615 0.00 0.00 0.00 1.75
119 120 7.703058 ACTCCATCCGTTTCAAAATTCTTAT 57.297 32.000 0.00 0.00 0.00 1.73
120 121 7.881232 ACTACTCCATCCGTTTCAAAATTCTTA 59.119 33.333 0.00 0.00 0.00 2.10
121 122 6.715264 ACTACTCCATCCGTTTCAAAATTCTT 59.285 34.615 0.00 0.00 0.00 2.52
122 123 6.238648 ACTACTCCATCCGTTTCAAAATTCT 58.761 36.000 0.00 0.00 0.00 2.40
123 124 6.496338 ACTACTCCATCCGTTTCAAAATTC 57.504 37.500 0.00 0.00 0.00 2.17
124 125 6.677913 CAACTACTCCATCCGTTTCAAAATT 58.322 36.000 0.00 0.00 0.00 1.82
125 126 5.335661 GCAACTACTCCATCCGTTTCAAAAT 60.336 40.000 0.00 0.00 0.00 1.82
126 127 4.023536 GCAACTACTCCATCCGTTTCAAAA 60.024 41.667 0.00 0.00 0.00 2.44
127 128 3.500680 GCAACTACTCCATCCGTTTCAAA 59.499 43.478 0.00 0.00 0.00 2.69
128 129 3.071479 GCAACTACTCCATCCGTTTCAA 58.929 45.455 0.00 0.00 0.00 2.69
129 130 2.614481 GGCAACTACTCCATCCGTTTCA 60.614 50.000 0.00 0.00 0.00 2.69
130 131 2.007608 GGCAACTACTCCATCCGTTTC 58.992 52.381 0.00 0.00 0.00 2.78
131 132 1.349688 TGGCAACTACTCCATCCGTTT 59.650 47.619 0.00 0.00 37.61 3.60
132 133 0.981183 TGGCAACTACTCCATCCGTT 59.019 50.000 0.00 0.00 37.61 4.44
133 134 1.204146 ATGGCAACTACTCCATCCGT 58.796 50.000 0.00 0.00 38.65 4.69
137 138 1.915489 TGGTGATGGCAACTACTCCAT 59.085 47.619 0.00 0.00 45.17 3.41
138 139 1.003118 GTGGTGATGGCAACTACTCCA 59.997 52.381 0.00 0.00 35.16 3.86
139 140 1.003118 TGTGGTGATGGCAACTACTCC 59.997 52.381 7.25 3.80 31.28 3.85
140 141 2.472695 TGTGGTGATGGCAACTACTC 57.527 50.000 7.25 0.00 31.28 2.59
141 142 2.949177 TTGTGGTGATGGCAACTACT 57.051 45.000 7.25 0.00 31.28 2.57
142 143 4.519540 AAATTGTGGTGATGGCAACTAC 57.480 40.909 0.00 0.00 31.28 2.73
143 144 4.586421 TCAAAATTGTGGTGATGGCAACTA 59.414 37.500 0.00 0.00 31.28 2.24
144 145 3.387374 TCAAAATTGTGGTGATGGCAACT 59.613 39.130 0.00 0.00 31.28 3.16
145 146 3.726607 TCAAAATTGTGGTGATGGCAAC 58.273 40.909 0.00 0.00 0.00 4.17
146 147 4.412796 TTCAAAATTGTGGTGATGGCAA 57.587 36.364 0.00 0.00 0.00 4.52
147 148 4.412796 TTTCAAAATTGTGGTGATGGCA 57.587 36.364 0.00 0.00 0.00 4.92
148 149 4.815846 AGTTTTCAAAATTGTGGTGATGGC 59.184 37.500 0.00 0.00 0.00 4.40
149 150 7.062138 CGATAGTTTTCAAAATTGTGGTGATGG 59.938 37.037 0.00 0.00 0.00 3.51
150 151 7.807433 TCGATAGTTTTCAAAATTGTGGTGATG 59.193 33.333 0.00 0.00 37.40 3.07
151 152 7.807907 GTCGATAGTTTTCAAAATTGTGGTGAT 59.192 33.333 0.00 0.00 37.40 3.06
152 153 7.136119 GTCGATAGTTTTCAAAATTGTGGTGA 58.864 34.615 0.00 0.00 37.40 4.02
153 154 6.086241 CGTCGATAGTTTTCAAAATTGTGGTG 59.914 38.462 0.00 0.00 37.40 4.17
154 155 6.140110 CGTCGATAGTTTTCAAAATTGTGGT 58.860 36.000 0.00 0.00 37.40 4.16
155 156 6.086241 CACGTCGATAGTTTTCAAAATTGTGG 59.914 38.462 0.00 0.00 37.40 4.17
156 157 6.086241 CCACGTCGATAGTTTTCAAAATTGTG 59.914 38.462 0.00 0.00 37.40 3.33
157 158 6.140110 CCACGTCGATAGTTTTCAAAATTGT 58.860 36.000 0.00 0.00 37.40 2.71
158 159 5.059221 GCCACGTCGATAGTTTTCAAAATTG 59.941 40.000 0.00 0.00 37.40 2.32
159 160 5.151389 GCCACGTCGATAGTTTTCAAAATT 58.849 37.500 0.00 0.00 37.40 1.82
160 161 4.214545 TGCCACGTCGATAGTTTTCAAAAT 59.785 37.500 0.00 0.00 37.40 1.82
161 162 3.560481 TGCCACGTCGATAGTTTTCAAAA 59.440 39.130 0.00 0.00 37.40 2.44
162 163 3.059461 GTGCCACGTCGATAGTTTTCAAA 60.059 43.478 0.00 0.00 37.40 2.69
163 164 2.477375 GTGCCACGTCGATAGTTTTCAA 59.523 45.455 0.00 0.00 37.40 2.69
164 165 2.063266 GTGCCACGTCGATAGTTTTCA 58.937 47.619 0.00 0.00 37.40 2.69
165 166 1.392510 GGTGCCACGTCGATAGTTTTC 59.607 52.381 0.00 0.00 37.40 2.29
166 167 1.435577 GGTGCCACGTCGATAGTTTT 58.564 50.000 0.00 0.00 37.40 2.43
167 168 0.734942 CGGTGCCACGTCGATAGTTT 60.735 55.000 0.00 0.00 37.40 2.66
168 169 1.153901 CGGTGCCACGTCGATAGTT 60.154 57.895 0.00 0.00 37.40 2.24
169 170 1.381928 ATCGGTGCCACGTCGATAGT 61.382 55.000 7.25 0.00 41.12 2.12
170 171 0.248907 AATCGGTGCCACGTCGATAG 60.249 55.000 9.18 0.00 41.91 2.08
171 172 0.173935 AAATCGGTGCCACGTCGATA 59.826 50.000 9.18 0.00 41.91 2.92
172 173 0.672401 AAAATCGGTGCCACGTCGAT 60.672 50.000 0.00 3.51 44.19 3.59
173 174 1.301087 AAAATCGGTGCCACGTCGA 60.301 52.632 0.00 0.00 37.33 4.20
174 175 1.154488 CAAAATCGGTGCCACGTCG 60.154 57.895 0.00 0.00 34.94 5.12
175 176 0.309612 AACAAAATCGGTGCCACGTC 59.690 50.000 0.00 0.00 34.94 4.34
176 177 0.309612 GAACAAAATCGGTGCCACGT 59.690 50.000 0.00 0.00 34.94 4.49
177 178 0.591170 AGAACAAAATCGGTGCCACG 59.409 50.000 0.00 0.00 0.00 4.94
178 179 1.930371 GCAGAACAAAATCGGTGCCAC 60.930 52.381 0.00 0.00 0.00 5.01
179 180 0.313672 GCAGAACAAAATCGGTGCCA 59.686 50.000 0.00 0.00 0.00 4.92
180 181 0.598065 AGCAGAACAAAATCGGTGCC 59.402 50.000 0.00 0.00 0.00 5.01
181 182 1.001378 ACAGCAGAACAAAATCGGTGC 60.001 47.619 0.00 0.00 0.00 5.01
182 183 2.653890 CACAGCAGAACAAAATCGGTG 58.346 47.619 0.00 0.00 0.00 4.94
183 184 1.001378 GCACAGCAGAACAAAATCGGT 60.001 47.619 0.00 0.00 0.00 4.69
184 185 1.666888 GGCACAGCAGAACAAAATCGG 60.667 52.381 0.00 0.00 0.00 4.18
185 186 1.666888 GGGCACAGCAGAACAAAATCG 60.667 52.381 0.00 0.00 0.00 3.34
186 187 1.666888 CGGGCACAGCAGAACAAAATC 60.667 52.381 0.00 0.00 0.00 2.17
187 188 0.314935 CGGGCACAGCAGAACAAAAT 59.685 50.000 0.00 0.00 0.00 1.82
188 189 1.732917 CGGGCACAGCAGAACAAAA 59.267 52.632 0.00 0.00 0.00 2.44
189 190 2.192861 CCGGGCACAGCAGAACAAA 61.193 57.895 0.00 0.00 0.00 2.83
190 191 2.594303 CCGGGCACAGCAGAACAA 60.594 61.111 0.00 0.00 0.00 2.83
191 192 3.872603 ACCGGGCACAGCAGAACA 61.873 61.111 6.32 0.00 0.00 3.18
192 193 3.357079 CACCGGGCACAGCAGAAC 61.357 66.667 6.32 0.00 0.00 3.01
193 194 3.113514 TTCACCGGGCACAGCAGAA 62.114 57.895 6.32 0.00 0.00 3.02
194 195 3.535629 CTTCACCGGGCACAGCAGA 62.536 63.158 6.32 0.00 0.00 4.26
195 196 3.052082 CTTCACCGGGCACAGCAG 61.052 66.667 6.32 0.00 0.00 4.24
198 199 2.743928 GAGCTTCACCGGGCACAG 60.744 66.667 6.32 0.00 0.00 3.66
199 200 4.329545 GGAGCTTCACCGGGCACA 62.330 66.667 6.32 0.00 0.00 4.57
206 207 3.003763 AGGACCCGGAGCTTCACC 61.004 66.667 0.73 0.00 0.00 4.02
207 208 2.579738 GAGGACCCGGAGCTTCAC 59.420 66.667 0.73 0.00 0.00 3.18
208 209 2.683933 GGAGGACCCGGAGCTTCA 60.684 66.667 0.73 0.00 0.00 3.02
209 210 2.066999 ATGGAGGACCCGGAGCTTC 61.067 63.158 0.73 0.00 37.93 3.86
210 211 2.041265 ATGGAGGACCCGGAGCTT 59.959 61.111 0.73 0.00 37.93 3.74
211 212 2.238319 TACATGGAGGACCCGGAGCT 62.238 60.000 0.73 0.00 37.93 4.09
212 213 1.335132 TTACATGGAGGACCCGGAGC 61.335 60.000 0.73 0.00 37.93 4.70
213 214 1.344763 GATTACATGGAGGACCCGGAG 59.655 57.143 0.73 0.00 37.93 4.63
214 215 1.062428 AGATTACATGGAGGACCCGGA 60.062 52.381 0.73 0.00 37.93 5.14
215 216 1.070758 CAGATTACATGGAGGACCCGG 59.929 57.143 0.00 0.00 37.93 5.73
216 217 1.762957 ACAGATTACATGGAGGACCCG 59.237 52.381 0.00 0.00 37.93 5.28
217 218 4.608948 CTACAGATTACATGGAGGACCC 57.391 50.000 0.00 0.00 34.81 4.46
222 223 6.663093 AGAGATAGCCTACAGATTACATGGAG 59.337 42.308 0.00 0.00 0.00 3.86
223 224 6.556639 AGAGATAGCCTACAGATTACATGGA 58.443 40.000 0.00 0.00 0.00 3.41
224 225 6.849085 AGAGATAGCCTACAGATTACATGG 57.151 41.667 0.00 0.00 0.00 3.66
225 226 8.965819 ACATAGAGATAGCCTACAGATTACATG 58.034 37.037 0.00 0.00 0.00 3.21
226 227 9.184523 GACATAGAGATAGCCTACAGATTACAT 57.815 37.037 0.00 0.00 0.00 2.29
227 228 7.612244 GGACATAGAGATAGCCTACAGATTACA 59.388 40.741 0.00 0.00 0.00 2.41
228 229 7.612244 TGGACATAGAGATAGCCTACAGATTAC 59.388 40.741 0.00 0.00 0.00 1.89
229 230 7.699878 TGGACATAGAGATAGCCTACAGATTA 58.300 38.462 0.00 0.00 0.00 1.75
230 231 6.556639 TGGACATAGAGATAGCCTACAGATT 58.443 40.000 0.00 0.00 0.00 2.40
231 232 6.146140 TGGACATAGAGATAGCCTACAGAT 57.854 41.667 0.00 0.00 0.00 2.90
232 233 5.584551 TGGACATAGAGATAGCCTACAGA 57.415 43.478 0.00 0.00 0.00 3.41
233 234 6.849085 AATGGACATAGAGATAGCCTACAG 57.151 41.667 0.00 0.00 0.00 2.74
249 250 9.905713 GGGATTGCTATCTTAATATAATGGACA 57.094 33.333 8.06 0.00 0.00 4.02
250 251 9.046296 CGGGATTGCTATCTTAATATAATGGAC 57.954 37.037 8.06 0.00 0.00 4.02
251 252 8.768397 ACGGGATTGCTATCTTAATATAATGGA 58.232 33.333 8.06 0.00 0.00 3.41
252 253 8.830580 CACGGGATTGCTATCTTAATATAATGG 58.169 37.037 8.06 0.00 0.00 3.16
253 254 8.830580 CCACGGGATTGCTATCTTAATATAATG 58.169 37.037 8.06 0.00 0.00 1.90
254 255 7.499232 GCCACGGGATTGCTATCTTAATATAAT 59.501 37.037 8.06 0.00 0.00 1.28
255 256 6.821665 GCCACGGGATTGCTATCTTAATATAA 59.178 38.462 8.06 0.00 0.00 0.98
256 257 6.156256 AGCCACGGGATTGCTATCTTAATATA 59.844 38.462 8.06 0.00 32.56 0.86
257 258 5.045578 AGCCACGGGATTGCTATCTTAATAT 60.046 40.000 8.06 0.00 32.56 1.28
258 259 4.286032 AGCCACGGGATTGCTATCTTAATA 59.714 41.667 8.06 0.00 32.56 0.98
259 260 3.073062 AGCCACGGGATTGCTATCTTAAT 59.927 43.478 8.06 0.00 32.56 1.40
260 261 2.438021 AGCCACGGGATTGCTATCTTAA 59.562 45.455 8.06 0.00 32.56 1.85
261 262 2.047061 AGCCACGGGATTGCTATCTTA 58.953 47.619 8.06 0.00 32.56 2.10
262 263 0.839946 AGCCACGGGATTGCTATCTT 59.160 50.000 8.06 0.00 32.56 2.40
263 264 0.839946 AAGCCACGGGATTGCTATCT 59.160 50.000 8.06 0.00 34.29 1.98
264 265 1.680338 AAAGCCACGGGATTGCTATC 58.320 50.000 0.00 0.00 34.29 2.08
265 266 2.851195 CTAAAGCCACGGGATTGCTAT 58.149 47.619 0.00 0.00 34.29 2.97
266 267 1.745827 GCTAAAGCCACGGGATTGCTA 60.746 52.381 0.00 0.00 34.29 3.49
267 268 1.032114 GCTAAAGCCACGGGATTGCT 61.032 55.000 0.00 0.00 36.79 3.91
268 269 1.032114 AGCTAAAGCCACGGGATTGC 61.032 55.000 0.00 0.00 43.38 3.56
269 270 1.017387 GAGCTAAAGCCACGGGATTG 58.983 55.000 0.00 0.00 43.38 2.67
270 271 0.618458 TGAGCTAAAGCCACGGGATT 59.382 50.000 0.00 0.00 43.38 3.01
271 272 0.839946 ATGAGCTAAAGCCACGGGAT 59.160 50.000 0.00 0.00 43.38 3.85
272 273 0.107703 CATGAGCTAAAGCCACGGGA 60.108 55.000 0.00 0.00 43.38 5.14
273 274 1.718757 GCATGAGCTAAAGCCACGGG 61.719 60.000 0.00 0.00 43.38 5.28
274 275 1.718757 GGCATGAGCTAAAGCCACGG 61.719 60.000 12.71 0.00 46.26 4.94
275 276 1.723870 GGCATGAGCTAAAGCCACG 59.276 57.895 12.71 0.00 46.26 4.94
278 279 0.744414 TCACGGCATGAGCTAAAGCC 60.744 55.000 7.31 7.31 43.38 4.35
279 280 0.375106 GTCACGGCATGAGCTAAAGC 59.625 55.000 0.00 0.00 38.28 3.51
280 281 1.394917 GTGTCACGGCATGAGCTAAAG 59.605 52.381 0.00 0.00 38.28 1.85
281 282 1.438651 GTGTCACGGCATGAGCTAAA 58.561 50.000 0.00 0.00 38.28 1.85
282 283 0.735978 CGTGTCACGGCATGAGCTAA 60.736 55.000 17.75 0.00 38.28 3.09
283 284 1.153842 CGTGTCACGGCATGAGCTA 60.154 57.895 17.75 0.00 38.28 3.32
284 285 2.433145 CGTGTCACGGCATGAGCT 60.433 61.111 17.75 0.00 38.28 4.09
285 286 4.152625 GCGTGTCACGGCATGAGC 62.153 66.667 25.70 4.32 42.82 4.26
286 287 1.840630 TTTGCGTGTCACGGCATGAG 61.841 55.000 25.70 0.00 42.82 2.90
287 288 1.889573 TTTGCGTGTCACGGCATGA 60.890 52.632 25.70 12.80 42.82 3.07
288 289 1.725625 GTTTGCGTGTCACGGCATG 60.726 57.895 25.70 0.00 42.82 4.06
289 290 2.637025 GTTTGCGTGTCACGGCAT 59.363 55.556 25.70 0.00 42.82 4.40
290 291 3.578272 GGTTTGCGTGTCACGGCA 61.578 61.111 25.70 20.02 42.82 5.69
291 292 3.578272 TGGTTTGCGTGTCACGGC 61.578 61.111 25.70 17.85 42.82 5.68
292 293 1.711060 AAGTGGTTTGCGTGTCACGG 61.711 55.000 25.70 8.76 42.82 4.94
293 294 0.931702 TAAGTGGTTTGCGTGTCACG 59.068 50.000 21.02 21.02 45.88 4.35
294 295 2.096174 TGTTAAGTGGTTTGCGTGTCAC 59.904 45.455 0.00 0.00 0.00 3.67
295 296 2.357075 TGTTAAGTGGTTTGCGTGTCA 58.643 42.857 0.00 0.00 0.00 3.58
296 297 3.619233 ATGTTAAGTGGTTTGCGTGTC 57.381 42.857 0.00 0.00 0.00 3.67
297 298 5.699097 ATAATGTTAAGTGGTTTGCGTGT 57.301 34.783 0.00 0.00 0.00 4.49
298 299 7.078851 TGTTATAATGTTAAGTGGTTTGCGTG 58.921 34.615 0.00 0.00 0.00 5.34
299 300 7.204496 TGTTATAATGTTAAGTGGTTTGCGT 57.796 32.000 0.00 0.00 0.00 5.24
300 301 9.944663 ATATGTTATAATGTTAAGTGGTTTGCG 57.055 29.630 0.00 0.00 0.00 4.85
333 334 9.453572 GGCCATAAGAATGAGTTCATATATGAA 57.546 33.333 21.67 21.67 38.64 2.57
334 335 8.605065 TGGCCATAAGAATGAGTTCATATATGA 58.395 33.333 11.49 11.49 36.79 2.15
335 336 8.797350 TGGCCATAAGAATGAGTTCATATATG 57.203 34.615 0.00 6.36 36.79 1.78
336 337 9.812347 TTTGGCCATAAGAATGAGTTCATATAT 57.188 29.630 6.09 0.00 36.79 0.86
337 338 9.288576 CTTTGGCCATAAGAATGAGTTCATATA 57.711 33.333 6.09 0.00 36.79 0.86
338 339 8.000709 TCTTTGGCCATAAGAATGAGTTCATAT 58.999 33.333 20.99 0.00 36.79 1.78
339 340 7.345691 TCTTTGGCCATAAGAATGAGTTCATA 58.654 34.615 20.99 0.00 36.79 2.15
340 341 6.189859 TCTTTGGCCATAAGAATGAGTTCAT 58.810 36.000 20.99 0.00 36.79 2.57
341 342 5.569355 TCTTTGGCCATAAGAATGAGTTCA 58.431 37.500 20.99 0.00 36.79 3.18
342 343 5.067023 CCTCTTTGGCCATAAGAATGAGTTC 59.933 44.000 22.46 0.00 34.84 3.01
343 344 4.952335 CCTCTTTGGCCATAAGAATGAGTT 59.048 41.667 22.46 0.00 34.84 3.01
344 345 4.530875 CCTCTTTGGCCATAAGAATGAGT 58.469 43.478 22.46 0.00 34.84 3.41
358 359 1.966451 GGTCACGTGGCCTCTTTGG 60.966 63.158 31.64 0.00 36.72 3.28
359 360 2.317609 CGGTCACGTGGCCTCTTTG 61.318 63.158 34.48 16.66 37.76 2.77
360 361 2.030562 CGGTCACGTGGCCTCTTT 59.969 61.111 34.48 0.00 37.76 2.52
361 362 4.681978 GCGGTCACGTGGCCTCTT 62.682 66.667 34.48 0.00 43.45 2.85
379 380 1.586154 CTTGTGGTCATTGCCGGGAC 61.586 60.000 2.18 1.05 0.00 4.46
380 381 1.303236 CTTGTGGTCATTGCCGGGA 60.303 57.895 2.18 0.00 0.00 5.14
381 382 2.993471 GCTTGTGGTCATTGCCGGG 61.993 63.158 2.18 0.00 0.00 5.73
382 383 1.926511 GAGCTTGTGGTCATTGCCGG 61.927 60.000 0.00 0.00 40.18 6.13
383 384 0.957395 AGAGCTTGTGGTCATTGCCG 60.957 55.000 0.00 0.00 42.66 5.69
384 385 0.524862 CAGAGCTTGTGGTCATTGCC 59.475 55.000 0.00 0.00 42.66 4.52
385 386 1.198637 GTCAGAGCTTGTGGTCATTGC 59.801 52.381 0.00 0.00 42.66 3.56
386 387 1.462283 CGTCAGAGCTTGTGGTCATTG 59.538 52.381 0.00 0.00 42.66 2.82
387 388 1.609061 CCGTCAGAGCTTGTGGTCATT 60.609 52.381 0.00 0.00 42.66 2.57
388 389 0.036952 CCGTCAGAGCTTGTGGTCAT 60.037 55.000 0.00 0.00 42.66 3.06
389 390 1.367471 CCGTCAGAGCTTGTGGTCA 59.633 57.895 0.00 0.00 42.66 4.02
390 391 1.374758 CCCGTCAGAGCTTGTGGTC 60.375 63.158 0.00 0.00 40.70 4.02
391 392 2.743718 CCCGTCAGAGCTTGTGGT 59.256 61.111 0.00 0.00 0.00 4.16
392 393 2.046892 CCCCGTCAGAGCTTGTGG 60.047 66.667 0.00 0.00 0.00 4.17
393 394 2.743928 GCCCCGTCAGAGCTTGTG 60.744 66.667 0.00 0.00 0.00 3.33
394 395 3.241530 TGCCCCGTCAGAGCTTGT 61.242 61.111 0.00 0.00 0.00 3.16
395 396 2.435586 CTGCCCCGTCAGAGCTTG 60.436 66.667 0.00 0.00 36.19 4.01
396 397 4.400961 GCTGCCCCGTCAGAGCTT 62.401 66.667 0.00 0.00 36.19 3.74
407 408 4.819761 TGTGATCGAGCGCTGCCC 62.820 66.667 18.48 0.00 0.00 5.36
408 409 3.558411 GTGTGATCGAGCGCTGCC 61.558 66.667 18.48 0.00 0.00 4.85
409 410 1.699656 ATTGTGTGATCGAGCGCTGC 61.700 55.000 18.48 5.60 0.00 5.25
410 411 0.025898 CATTGTGTGATCGAGCGCTG 59.974 55.000 18.48 7.71 0.00 5.18
411 412 0.108662 TCATTGTGTGATCGAGCGCT 60.109 50.000 11.27 11.27 0.00 5.92
412 413 0.025513 GTCATTGTGTGATCGAGCGC 59.974 55.000 7.40 7.40 39.48 5.92
413 414 0.295763 CGTCATTGTGTGATCGAGCG 59.704 55.000 0.00 0.00 39.48 5.03
414 415 1.321743 GTCGTCATTGTGTGATCGAGC 59.678 52.381 0.00 0.00 39.35 5.03
415 416 1.920574 GGTCGTCATTGTGTGATCGAG 59.079 52.381 0.00 0.00 39.35 4.04
416 417 1.403647 GGGTCGTCATTGTGTGATCGA 60.404 52.381 0.00 0.00 39.48 3.59
417 418 0.999406 GGGTCGTCATTGTGTGATCG 59.001 55.000 0.00 0.00 39.48 3.69
418 419 0.999406 CGGGTCGTCATTGTGTGATC 59.001 55.000 0.00 0.00 39.48 2.92
419 420 0.606096 TCGGGTCGTCATTGTGTGAT 59.394 50.000 0.00 0.00 39.48 3.06
420 421 0.319211 GTCGGGTCGTCATTGTGTGA 60.319 55.000 0.00 0.00 0.00 3.58
421 422 0.598942 TGTCGGGTCGTCATTGTGTG 60.599 55.000 0.00 0.00 0.00 3.82
422 423 0.319555 CTGTCGGGTCGTCATTGTGT 60.320 55.000 0.00 0.00 0.00 3.72
423 424 1.626654 GCTGTCGGGTCGTCATTGTG 61.627 60.000 0.00 0.00 0.00 3.33
424 425 1.374252 GCTGTCGGGTCGTCATTGT 60.374 57.895 0.00 0.00 0.00 2.71
425 426 2.100631 GGCTGTCGGGTCGTCATTG 61.101 63.158 0.00 0.00 0.00 2.82
426 427 1.899437 ATGGCTGTCGGGTCGTCATT 61.899 55.000 0.00 0.00 0.00 2.57
427 428 2.359169 ATGGCTGTCGGGTCGTCAT 61.359 57.895 0.00 0.00 0.00 3.06
428 429 2.994995 ATGGCTGTCGGGTCGTCA 60.995 61.111 0.00 0.00 0.00 4.35
429 430 2.509336 CATGGCTGTCGGGTCGTC 60.509 66.667 0.00 0.00 0.00 4.20
430 431 4.082523 CCATGGCTGTCGGGTCGT 62.083 66.667 0.00 0.00 0.00 4.34
431 432 4.082523 ACCATGGCTGTCGGGTCG 62.083 66.667 13.04 0.00 0.00 4.79
432 433 2.257409 ATCACCATGGCTGTCGGGTC 62.257 60.000 13.04 0.00 0.00 4.46
433 434 2.300967 ATCACCATGGCTGTCGGGT 61.301 57.895 13.04 0.00 0.00 5.28
434 435 1.820906 CATCACCATGGCTGTCGGG 60.821 63.158 13.04 0.00 0.00 5.14
435 436 2.475466 GCATCACCATGGCTGTCGG 61.475 63.158 13.04 0.00 0.00 4.79
436 437 3.104766 GCATCACCATGGCTGTCG 58.895 61.111 13.04 6.53 0.00 4.35
488 489 4.704833 CTCCCTGGCGTGTGGGTG 62.705 72.222 8.23 3.37 43.74 4.61
489 490 4.954118 TCTCCCTGGCGTGTGGGT 62.954 66.667 8.23 0.00 43.74 4.51
490 491 4.394712 GTCTCCCTGGCGTGTGGG 62.395 72.222 2.94 2.94 44.66 4.61
491 492 4.742201 CGTCTCCCTGGCGTGTGG 62.742 72.222 0.00 0.00 39.21 4.17
514 515 4.457496 ACCGTCGCCTGGATGCAG 62.457 66.667 7.35 7.35 0.00 4.41
515 516 4.758251 CACCGTCGCCTGGATGCA 62.758 66.667 0.00 0.00 0.00 3.96
516 517 4.451150 TCACCGTCGCCTGGATGC 62.451 66.667 0.00 0.00 0.00 3.91
517 518 2.509336 GTCACCGTCGCCTGGATG 60.509 66.667 0.00 0.00 0.00 3.51
518 519 3.771160 GGTCACCGTCGCCTGGAT 61.771 66.667 0.00 0.00 0.00 3.41
536 537 4.531912 CAGCTTGGATGCAGCGCG 62.532 66.667 0.00 0.00 42.55 6.86
537 538 2.203972 TTTCAGCTTGGATGCAGCGC 62.204 55.000 0.00 0.00 42.55 5.92
538 539 0.241749 TTTTCAGCTTGGATGCAGCG 59.758 50.000 0.00 0.00 42.55 5.18
539 540 2.443887 TTTTTCAGCTTGGATGCAGC 57.556 45.000 0.00 0.00 37.56 5.25
540 541 7.605410 AAATTATTTTTCAGCTTGGATGCAG 57.395 32.000 0.00 0.00 34.99 4.41
541 542 7.982761 AAAATTATTTTTCAGCTTGGATGCA 57.017 28.000 0.00 0.00 28.82 3.96
542 543 9.154847 AGTAAAATTATTTTTCAGCTTGGATGC 57.845 29.630 8.28 0.00 36.47 3.91
544 545 9.154847 GCAGTAAAATTATTTTTCAGCTTGGAT 57.845 29.630 8.28 0.00 36.47 3.41
545 546 7.328249 CGCAGTAAAATTATTTTTCAGCTTGGA 59.672 33.333 17.03 0.00 36.47 3.53
546 547 7.447430 CGCAGTAAAATTATTTTTCAGCTTGG 58.553 34.615 17.03 4.28 36.47 3.61
547 548 6.949877 GCGCAGTAAAATTATTTTTCAGCTTG 59.050 34.615 17.03 8.09 36.47 4.01
548 549 6.644592 TGCGCAGTAAAATTATTTTTCAGCTT 59.355 30.769 5.66 0.00 36.47 3.74
549 550 6.089417 GTGCGCAGTAAAATTATTTTTCAGCT 59.911 34.615 12.22 6.71 36.47 4.24
550 551 6.233500 GTGCGCAGTAAAATTATTTTTCAGC 58.766 36.000 12.22 10.50 36.47 4.26
551 552 6.364706 TGGTGCGCAGTAAAATTATTTTTCAG 59.635 34.615 12.22 2.13 36.47 3.02
552 553 6.216569 TGGTGCGCAGTAAAATTATTTTTCA 58.783 32.000 12.22 0.00 36.47 2.69
553 554 6.698359 TGGTGCGCAGTAAAATTATTTTTC 57.302 33.333 12.22 3.73 36.47 2.29
554 555 7.348956 GTTTGGTGCGCAGTAAAATTATTTTT 58.651 30.769 12.22 1.36 38.56 1.94
555 556 6.073494 GGTTTGGTGCGCAGTAAAATTATTTT 60.073 34.615 12.22 8.07 36.67 1.82
556 557 5.407084 GGTTTGGTGCGCAGTAAAATTATTT 59.593 36.000 12.22 0.00 0.00 1.40
557 558 4.926832 GGTTTGGTGCGCAGTAAAATTATT 59.073 37.500 12.22 0.00 0.00 1.40
558 559 4.490743 GGTTTGGTGCGCAGTAAAATTAT 58.509 39.130 12.22 0.00 0.00 1.28
559 560 3.609644 CGGTTTGGTGCGCAGTAAAATTA 60.610 43.478 12.22 0.00 0.00 1.40
560 561 2.749776 GGTTTGGTGCGCAGTAAAATT 58.250 42.857 12.22 0.00 0.00 1.82
561 562 1.335506 CGGTTTGGTGCGCAGTAAAAT 60.336 47.619 12.22 0.00 0.00 1.82
562 563 0.029567 CGGTTTGGTGCGCAGTAAAA 59.970 50.000 12.22 9.30 0.00 1.52
563 564 0.814410 TCGGTTTGGTGCGCAGTAAA 60.814 50.000 12.22 12.90 0.00 2.01
564 565 1.225376 CTCGGTTTGGTGCGCAGTAA 61.225 55.000 12.22 6.19 0.00 2.24
565 566 1.666553 CTCGGTTTGGTGCGCAGTA 60.667 57.895 12.22 0.00 0.00 2.74
566 567 2.933878 TTCTCGGTTTGGTGCGCAGT 62.934 55.000 12.22 0.00 0.00 4.40
567 568 2.175184 CTTCTCGGTTTGGTGCGCAG 62.175 60.000 12.22 0.00 0.00 5.18
568 569 2.203084 TTCTCGGTTTGGTGCGCA 60.203 55.556 5.66 5.66 0.00 6.09
569 570 1.901650 CTCTTCTCGGTTTGGTGCGC 61.902 60.000 0.00 0.00 0.00 6.09
570 571 1.901650 GCTCTTCTCGGTTTGGTGCG 61.902 60.000 0.00 0.00 0.00 5.34
571 572 0.884704 TGCTCTTCTCGGTTTGGTGC 60.885 55.000 0.00 0.00 0.00 5.01
572 573 1.593196 TTGCTCTTCTCGGTTTGGTG 58.407 50.000 0.00 0.00 0.00 4.17
573 574 2.222027 CTTTGCTCTTCTCGGTTTGGT 58.778 47.619 0.00 0.00 0.00 3.67
574 575 1.537202 CCTTTGCTCTTCTCGGTTTGG 59.463 52.381 0.00 0.00 0.00 3.28
575 576 1.068954 GCCTTTGCTCTTCTCGGTTTG 60.069 52.381 0.00 0.00 33.53 2.93
576 577 1.239347 GCCTTTGCTCTTCTCGGTTT 58.761 50.000 0.00 0.00 33.53 3.27
577 578 0.108585 TGCCTTTGCTCTTCTCGGTT 59.891 50.000 0.00 0.00 38.71 4.44
578 579 0.321122 CTGCCTTTGCTCTTCTCGGT 60.321 55.000 0.00 0.00 38.71 4.69
579 580 1.642952 GCTGCCTTTGCTCTTCTCGG 61.643 60.000 0.00 0.00 38.71 4.63
580 581 0.673022 AGCTGCCTTTGCTCTTCTCG 60.673 55.000 0.00 0.00 35.67 4.04
581 582 1.468127 GAAGCTGCCTTTGCTCTTCTC 59.532 52.381 0.00 0.00 40.89 2.87
582 583 1.532523 GAAGCTGCCTTTGCTCTTCT 58.467 50.000 0.00 0.00 40.89 2.85
583 584 0.167689 CGAAGCTGCCTTTGCTCTTC 59.832 55.000 0.00 0.00 40.22 2.87
584 585 2.251600 CGAAGCTGCCTTTGCTCTT 58.748 52.632 0.00 0.00 40.22 2.85
585 586 3.978272 CGAAGCTGCCTTTGCTCT 58.022 55.556 0.00 0.00 40.22 4.09
605 606 3.480668 CGGATGTTTGTTTCGTTGTGAAC 59.519 43.478 0.00 0.00 35.97 3.18
606 607 3.374367 TCGGATGTTTGTTTCGTTGTGAA 59.626 39.130 0.00 0.00 33.85 3.18
607 608 2.937149 TCGGATGTTTGTTTCGTTGTGA 59.063 40.909 0.00 0.00 0.00 3.58
608 609 3.326733 TCGGATGTTTGTTTCGTTGTG 57.673 42.857 0.00 0.00 0.00 3.33
609 610 3.127203 TGTTCGGATGTTTGTTTCGTTGT 59.873 39.130 0.00 0.00 0.00 3.32
610 611 3.686128 TGTTCGGATGTTTGTTTCGTTG 58.314 40.909 0.00 0.00 0.00 4.10
611 612 3.623960 TCTGTTCGGATGTTTGTTTCGTT 59.376 39.130 0.00 0.00 0.00 3.85
612 613 3.199677 TCTGTTCGGATGTTTGTTTCGT 58.800 40.909 0.00 0.00 0.00 3.85
613 614 3.870723 TCTGTTCGGATGTTTGTTTCG 57.129 42.857 0.00 0.00 0.00 3.46
614 615 6.879188 TTTTTCTGTTCGGATGTTTGTTTC 57.121 33.333 0.00 0.00 0.00 2.78
634 635 2.162809 AGGTCGTGCTTGTTTCGTTTTT 59.837 40.909 0.00 0.00 0.00 1.94
635 636 1.741145 AGGTCGTGCTTGTTTCGTTTT 59.259 42.857 0.00 0.00 0.00 2.43
636 637 1.063469 CAGGTCGTGCTTGTTTCGTTT 59.937 47.619 0.00 0.00 0.00 3.60
643 644 0.324943 ATAAGCCAGGTCGTGCTTGT 59.675 50.000 6.98 0.00 46.66 3.16
647 648 1.538419 GGAGTATAAGCCAGGTCGTGC 60.538 57.143 0.00 0.00 0.00 5.34
698 699 6.480285 AGCGACGCACGTTTAATTAAATATT 58.520 32.000 23.70 0.00 44.60 1.28
699 700 6.019318 AGAGCGACGCACGTTTAATTAAATAT 60.019 34.615 23.70 2.95 44.60 1.28
700 701 5.289193 AGAGCGACGCACGTTTAATTAAATA 59.711 36.000 23.70 0.00 44.60 1.40
701 702 4.092383 AGAGCGACGCACGTTTAATTAAAT 59.908 37.500 23.70 0.00 44.60 1.40
702 703 3.429543 AGAGCGACGCACGTTTAATTAAA 59.570 39.130 23.70 6.54 44.60 1.52
703 704 2.988493 AGAGCGACGCACGTTTAATTAA 59.012 40.909 23.70 0.00 44.60 1.40
704 705 2.595536 GAGAGCGACGCACGTTTAATTA 59.404 45.455 23.70 0.00 44.60 1.40
705 706 1.389106 GAGAGCGACGCACGTTTAATT 59.611 47.619 23.70 0.00 44.60 1.40
760 762 4.162096 TGTTTACTCTTCTCGAGCTGAC 57.838 45.455 7.81 0.00 43.85 3.51
875 902 1.291877 CTTTTGGGAGCCGTCACTCG 61.292 60.000 0.00 0.00 37.57 4.18
886 913 0.404040 AGATTCGGTGGCTTTTGGGA 59.596 50.000 0.00 0.00 0.00 4.37
931 958 0.620030 GGGTAGGCGGGGTAAAAAGA 59.380 55.000 0.00 0.00 0.00 2.52
947 974 2.204459 AAAGGGATACGGGGAGGGGT 62.204 60.000 0.00 0.00 37.60 4.95
1297 1340 3.773404 GTTGGCGGGGCGGTAGTA 61.773 66.667 0.00 0.00 0.00 1.82
1438 1483 1.474077 GCCTCTTCCCTCGTTACGTAA 59.526 52.381 3.29 3.29 0.00 3.18
1557 1627 1.851658 GCACACACAATGGGAAACAC 58.148 50.000 0.00 0.00 30.67 3.32
1563 1633 2.050168 GCACGCACACACAATGGG 60.050 61.111 0.00 0.00 36.17 4.00
1564 1634 2.427245 CGCACGCACACACAATGG 60.427 61.111 0.00 0.00 0.00 3.16
1566 1636 2.327592 CACGCACGCACACACAAT 59.672 55.556 0.00 0.00 0.00 2.71
1567 1637 4.528740 GCACGCACGCACACACAA 62.529 61.111 0.00 0.00 0.00 3.33
1603 1687 1.072965 ACTATAGCAGGGCATCCAAGC 59.927 52.381 0.00 0.00 36.84 4.01
1688 1772 5.357742 ACCTTTGCCTCTGTTTTGAAAAT 57.642 34.783 0.00 0.00 0.00 1.82
1689 1773 4.817318 ACCTTTGCCTCTGTTTTGAAAA 57.183 36.364 0.00 0.00 0.00 2.29
1690 1774 4.502962 CAACCTTTGCCTCTGTTTTGAAA 58.497 39.130 0.00 0.00 0.00 2.69
1737 1821 6.301169 TGCCCGGTTTTCCATAATTATTTT 57.699 33.333 0.00 0.00 40.70 1.82
1739 1823 5.941555 TTGCCCGGTTTTCCATAATTATT 57.058 34.783 0.00 0.00 40.70 1.40
1854 1951 3.560068 GTCAGAATCGGAGTTGTGTTGTT 59.440 43.478 0.00 0.00 0.00 2.83
1885 1982 1.947456 GTGCCTGGTTTCGTTCTTCTT 59.053 47.619 0.00 0.00 0.00 2.52
2095 2196 2.234661 CACTGTGGCATCCAGACTTCTA 59.765 50.000 11.62 0.00 32.34 2.10
2107 2208 1.296392 CGGGAGAATCACTGTGGCA 59.704 57.895 8.11 0.00 35.27 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.