>input_sequence_80580
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-------------------------------------------------------------------ACACCACCA----
--------AAGCCTCAAACGCCCACGTTGGAGCAGTAGCAGCAGCAAA---GAGCCGGAGCCCTCCAGCCGTCCGATCTT
CCGACGCAGACGGATCCGATGGCCCTCGCTCTCTCCGGCTCCGCTGCTGCCCGCGCGCTCGCCCAGCGGCTGGCCCCGGC
CACCGCCAGGGGCTACGCGGCGGCGGCCTCCTCCGGGGCGATGAGGCGCGGCGCCGCGGCGGCCGCGGACGGGAAGGCGG
CCAGGGAGGCCGAGAAGGTCGCGGCCGACGCCTCGTGGGTGCCCGACCCCGTCACCGGCTACTACCGCCCCGCCAACCGC
GCCGCCGGCGCCGACCCCGCCGACCTCCGCGCCGCGCACCTCGGACAGACCTACGCACGGGCCTAAAGCCC-CGCTCCGC
TTGACCCTCCTGGTCCCGCCATGGAAAACAAA------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------
>chr3D_1_TraesCS3D01G180800
GCTCCGGGAACGTCTCATGGTCTTCCGAAGTCTTCATGAAGTTTTCTCCGAAATACTCCCTACGTATTTAGACAAATCTA
AGACATGATTTGATACATCCATATTTAGACAAATCTAAGATAAGAATTTTGAAACGGATGGAGTAGTTGCCATCACCACA
ATTTTGAAAACTATCGACGTGGCACCGATTTTGTTCTGCTGTGCCCGGTGAAGCTCCGGGTCCTCCATGTAATCTGTAGG
CTATCTCTATGTCCATTATATTAAGATAGCAATCCCGTGGCTTTAGCTCATGCCGTGACACGCAAACCACTTAACATTAT
AACATATAATCATTTCATATATGAACTCATTCTTATGGCCAAAGAGGCCACGTGACCGCGTCCCGGCAATGACCACAAGC
TCTGACGGGGCAGCGCTCGATCACACAATGACGACCCGACAGCCATGGTGATGCCCCGCGCGGCGTTGACCTCCGCGAGC
CGGCGCTGCACCCACACGCCAGGGAGACGCAGCGCTGCATCCAGGCGACGGTGACCCGCGCTGCATCCAAGCTGAAAAAT
AATTTTACTGCGCACCAAACCGAGAAGAGCAAAGGCAGCTTCGCCGTTCACAACGAAACAAACATCCGAACAGAAAAAAC
GAAACAAGCACGACCTGGCTTATACTCCTCTCAAAAGTCCAAATTGTCACCAACTTTTAATATTTAATTAAACGTGCGTC
GCTCTCGCTG-GCTCATGTCGTCCCGGCAATGCACGCCAACGTCAGCTCGAGAAGAGTAAACAAAAATATCAG-------
------------------GTCGACCACGTAGGAAGGAAGCGACGAACCAGCGGCGCCATTTCCTGCGTCCCGTCGCGTGG
GCACGTGCCGGTTCGCCGCGCCGAGTGACGGCTCCCAAAAGCCACCGAATCTTTGACAAAACCCCGCGCCGTTGGGCTCT
TTTTACCCCGCCTACCCCT-CCCCGTATCCCTTTAAAAACGGGCCCTGGCCTCTCTCTCGTCCCCCCACACCACCA----
--------AAGCCTCAAACGCCCACGTTGGAGCAGTAGCAGCAGCAAA---GAGCCGGAGCCCTCCAGCCGTCCGATCTT
CCGACGCAGACGGATCCGATGGCCCTCGCTCTCTCCGGCTCCGCTGCTGCCCGCGCGCTCGCCCAGCGGCTGGCCCCGGC
CACCGCCAGGGGCTACGCGGCGGCGGCCTCCTCCGGGGCGATGAGGCGCGGCGCCGCGGCGGCCGCGGACGGGAAGGCGG
CCAGGGAGGCCGAGAAGGTCGCGGCCGACGCCTCGTGGGTGCCCGACCCCGTCACCGGCTACTACCGCCCCGCCAACCGC
GCCGCCGGCGCCGACCCCGCCGACCTCCGCGCCGCGCACCTCGGACAGACCTACGCACGGGCCTAAAGCCC-CGCTCCGC
TTGACCCTCCTGGTCCCGCCATGGAAAACAAAACTGCTAC-GTTACGTAACG---------AGGGAAGAGGCAGGCGTGG
CTCTTTCGCCGAGCGCCGCGCGCCGC----------------GCGCGGCTTAACGACGCATCAATCATCATCATCGATCC
TATACTACGGGGGAGATGCAGCCTGGGTGTTTCCCAT--------------TGTGTGTGCGTGCGTGCGTGCGTCTGGGC
AGCTGGGCTTGGATGCCCTGCTATAGTGTTGGTGTGCTCAGATCAGATGTATTTCTCGTCGAGCAGGGCTTGTACCTTTT
ATTTTTATTTTATTTTCAAAACAGAGGCAAAGGTTGCCTCATCTATTAATTAAGCAGAAAAAAA----------TAATTA
TGGAAAACCGGGCAAAAACCGAAACAACAAGGGCCGAGCCCACTCTCA---TAGACTGAATCACACAGGGCAAAGCCCAC
CCTCTTCGACAACATGTCGACCTGCAGACAAACAACACAACTCCGATTCTGACGGAGAACTAAGAAGAACGAAACCAGGC
ACGGCTGGCGCTACGAAAG-ATCGCCGAAAG-GACACCTGCAGCCAGTCATCATATACCATAGGGCCTCGCCGCCGCAGC
TTCGACTCCACAGCAACAAACAAACC-AGGCAATACCGTGGACACGTCGGAGAAGAACCGACTATCGCAACCACTGCCGC
GTCGCCGACATCGCTCCC-ACCATCATCGTTGCCATAGAAGTCTGGATGCCACAGTGATTCTCCCGGGGCCGCCGCCCCG
ACATCCACTGTTCCGTCGCGCCCAGCGCAATCAACCGGCACCACCTTCCGGGGCCGCTGCCCCGACATACCACCGCTCCG
CTCGAGCAGCAACGCCGCACAACCCAGCTGCCCGCAGCCCACGCTGCTCAGGGCAACCGCTCGCAGACCACGAACGTCGC
ACCACATCCAGGGCCGTCG-CCCCGACGCAAAGTCAGACCGCCCCCTCTGGAACGCGTCGACCGGACCGACAAGCCTGCC
ACCCAAGTGGCCCAAGATTGCCACCCAAGCGAAGGTCGAGCCGCCGCCCC
>chr3D_638
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------AAC
GAAGCAACCACGACTACGGAT-TACCCCTCTCAAAAGTCCAAATTGTCACCAACTTTTT-------ATTAAGCGCGCGTC
GCGCTCACCAAGCCCATGTCGACCCGGCAATGCACGCTAACATCAGCTCGAGAAGAGTAAACAAAAATATCAG-------
------------------GTCGACCACGTAGGAAGGAAGCGACGAACCCGCGGCGCCATTTCCTGCGTCC-GTCGCGTCG
GCACGTGCCGGTACGCCGTGCTGAGTGACGGCGCCCAAAAGCCACCAAATCTTTGACAAAACCCCGCGCCGTTCCGCCCT
TTTTACCTCGCCTGCCCCT-CCCCGTCCCTCTTTATATACGGCCCG------CC--CTCGTTCGCCCACACCACCAATAA
AGCCCACCAAGCCTCAAACGCCCACGTTGGAGCAGCAGCAGCACCAGCACCGAGCCGGAGCCCACCAGCCGTCCGATAA-
---------ACAGATCCGATGGCTCTCGCTCTCTCCGGCTCCGCTGCTGCCCGCGCGCTCGCCCAGCGGCTGGCCCCGGC
CA---CCAGGGGCTACGCGGCGGCGGCCTCCTCCGGGGCGATGAGGCGCGGCGCCGCGGCGGCCGCGGACGGGAAGGCGG
CCAGGGAGGCCGAGAAGGCCGCGGCCGACGCCTCGTGGGTGCCCGACCCCGTCACCGGCCACTACCGCCCCGCCAACCGC
GCCGTCGGCGCCGACCCCGCCGACCTCCGCGCCGCGCACCTCGGGCAGACCTACGCACGGGCTTGAAGGCCACGCTCGA-
-CGACCCTCCTGGCCCCGCCATGGAAGG-AAAACTGCTAT-GCTACGTAAAA---------GGGGAAGC--CAGGCGGGG
CTCGTTCGCCGAGCGCAGCGCCGCGGGCGGCTGGTGTCGCTGGCGCGGCTTAACGACGCATCAATCATCATCGTCGATCC
TATACTACGGAGGAGATGCGGCCTGGATGTTTGGCTGTTTCCCATTGTGTGTGTGTGCGCGTGCGTGCGTGCGTCCGGG-
-------CTTGGATGCCCTGCTATAGTGTTCATGTGCTCAGATCAGATGTATTTCTCGTCGAGCAGGGCTTGTACCTTTT
ACTTTTA-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------
>chr3B_638
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------AAC
GAAGCAAACACAACTTGGCTTAC-CCTCTCTCAAAAGTCCAAATTGTCACCAACTTTTT-------ATTAAGCGCGCGTC
GCTCTCACTG-GCTCATGTCGACCCGGCAATGCACGCTATCATCAGCTCGAGAAGAGTAAACAAAAATATCAG-------
------------------GTCGACCACGTAGGAAGGAAGCGACGAACCCGCAGCGCCATTTCCTGCGTCC-GTCGCGTCG
GCACGTGCCGGTTCGCCGCGATGAGTGACGGCGCCCAAAAGCCACCGAATCTTTGACAAAAC-CCGCGCCGTTGGGCAAG
TTTTACCC-GCCTGCCCCTGCCCCGTCTCCCTTTAAATACGGGCCCTGGCCTCC--CTCGTTCCCCCACACCACC---AA
AGCCCACCCAGCCTCAAACGCCCACGTTGGAGCAGTAGCAGCAGCACA---GAGCCGGAGCCCTCCAGCCGTCCGATCGT
CCGACACAGACAGATCCGATGGCCCTCGCTCTCTCCGGCTCCGCTGCTGCCCGCGCGCTCGCCCAGCGGCTGGCCCCAGC
CACCGCCAGGGGCTACGCGGCGGCGGCCTCCTCCGGGGCGATGAGGCGCGGCGCCGCGGCGACCGCGGACGGGAAGGCGG
CCAGGGAGGCTGAGAAGGCCGCGGCCGACGCCTCGTGGGTGCCCGACCCCGTCACCGGCCACTACCGCCCCGCCAACCGC
GCCGCCGGCGCCGACCCCGCCGACCTCCGCGCCGCGCACCTCGGACAGACCTACGCACGGGCTTGAAGCCC-CGCTCGA-
-CGACCCTCCTGGCCCCGCCATGGAAGG-AAAACTGCTAT-GCTAGGTAACG---------AGGGAAGAGGCAGGAGGCG
CTCGTTCGCCGAGCGCTGCGCGCGA------------------CGCGGCTTAACGACGGATCA-TCATCATGATCGATCC
TATACTACTGGGGAGGTGCGGG--------TTGGATGTTTCCCATTGT------------GTGCGTGCGTTCGTCTGGG-
-------CTTGGATGCCCTGCTATAGTGTTGGTGTGCTCAGATCAGATGTATCTCTCGTCGAGCAGGGCTTGTACCTTTT
ACTTTTATTT----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------
>chr3A_638
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------AAC
GAACCCAACACGACCTGGCTTATACTCCTCTCAAAAGTCCTAATTGCCACCAACTTTTT-------ATTAAACGTGCGTC
GCTCTCGCTG-GCTCATGTCGACCGGGCGAGGCACGGCAACATCAGCTCGAGAAGAGTAAACAAAAATATCAAGTCGACT
CTCTCAAAAAAAAATCAAGTCGACCACGTAGGAAGGAAGCGACGAACCCGCGGCGCCATTTCCTGCGTCC-GTCGCGTCG
GCACGTGCCGGTTCGCCGCGCTGAGTGACGGCGCCCAAAAGCCACCGAATCTTTGACAAAACCCCGTGCCGTTGGGCCCT
TTTTACTGCGCCTGCCCCT-CCCCGTCTCCCTTTATATACGGGCCCTGGCCTC--TCTCGTTCCCCCACACCACC---AA
AGCCCACCAAGCCTCAAACGCCCACGTTGGAGCAGTAGCAGCAGCACA---GAGCCAGAGCCAACCAGCCGTTCGATCGT
CCAACGCAGACGGATCCGATGGCCCTCGCTCTCTCCGGCTCCGCTGCTGCCCGCGCGCTCGCCCAGCGGCTGGCCCCGGC
CACCGCCAGGGGCTACGCGGCGGCGGCCTCCTCCGGGGCGATGAGGCGCGGCGCCGCGGCGGCCGCGGACGGGAAGGCGG
CCAGGGAGGCCGAGAAGGCCGCGGCCGACGCCTCGTGGGTGCCCGACCCCGTCACCGGCCACTACCGCCCCGCCAACCGC
GCCGCCGGCGCCGACCCCGCCGACCTCCGCGCCGCGCACCTCGGACAGACCTACGCACGGGCCTGAAGCCC-GGCTCCAC
TCGACCCTCCTGGTCCCGCCATGGAAAACAGAACTGCTACCGCTACGTAACGAGGGAAGATAGGGAAGAGGCAGGCGGGG
CTCGTTCGCCGCGCGCGGCTGT----------------------GCGGCTTCACGACGCATC--TCATCATCATCGATCC
TATACTACGGGGGAGATGCGGCCTGGACGTTTGGCTGTTTCCCATTGTGTT--TGTGTGCGTGCGTGCGTGCGTCTGGG-
-------CTTGGATGC----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------
>chr3A_1670
TACATTTGA-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------TTT
ATTATTATTAT---TTTTAAACGAAGGCAAAGGTTGCCTCATCTATTAATTAAGTAGAA-GAGAATTGCCTGGTTAATTA
CGGGAAACCCGGCAAAAACCGAAATAACAAGGGCCAAGCCCACTCCTATAGTAGACTAAACAACACAGGGCAAAGCCCAC
CCTTATCGACGACAAGTCGACCTGTAGTCAGACAACGCAACTCCAAATCTGACGGAGAACTTAGAAGAACAAAACCAGGC
ACGGCTGGCGCCACGAAAAAATCGCCGAACGAGCCAGCTGCAGCCAGTCATCGTACACCACA-GGCCTCGTCGCTGCAGC
TTCGACTCCACAACAACAAGCAAACCGAGGCAAAACCGTGGACACGTCGGAGAAGAGCCGACTACCGCAACCATTACCGC
ATTGCCAACATCGCTTCCCACCATCATCGTTGCCTCAGGAGTCTGGTCGCCACAATGATTCTTTCGGGGCCGCCGCCCCA
ACATCCACCGCTCCGTCGCGCTCAGCGCAATCAAACGGCACCACCTTCCGGGGCCGCCGTCCCGACATACCACTGCTCGC
CTTGAGCAGCAACGCCGCACAGCCCAATTGCCCGCAGCCCACACTGCTCAGGGCAACCGCTCGC----------------
--------------------------------------------------------------------------------
--------------------------------------------------
>chr7A_1674
TTTTTTTCTTTATGCT----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------TTTT---TTCAAAACGGAGGCAAAGATTGCCTCATCTATTAATTAAGTAGAA-GAGAATTGCCTAGTTAATTA
CGGAAAACTGTGCAAAAACCGGAACAACAAGGGCCGAGCCCACTCCCATAG---ACTGAAACACACAGGGCAAAGTCCAC
CCTCCTCGACGACATGTCGACCTACGAACAGACAACGTATCTCCGATTCTGACAGAGAATTCAGAAAAACGAAACCAGGC
ACGACTGGTGCCACGGAAG-ATCGCCGAAAG-GCCACCTGCAGCCAGTCATCGTACACCATAGGGCCTCGCCGCCGCAGT
TTCGACTCCACAGCAACAAACAAACCGAGGCAATATCGTGGACACGCCGGAGAAGAGCCGACTATCGCAACCATTGCCGC
GTCGCCGACATCGCTCCC-ACCATCATCGTTGCCACAGAAGTCTGGACGCCACAGTGAGTCTCTCGGGAACGCCGCCCCG
ACATCCACTGCTCTGTCGCGCCCAGCGCAATCAACCGGCACCACCTTCCGGGGCCGCCGCCCCGACGTACCACCGCTCCG
CTCGAGCAGCAACGCCGCACGACCCAGCTGCCCGCAGCCCACGCTGCTCAGGGCAACCGCTCGCAGACCACGAACGTCGC
ACCACATCCGGGGCCGCCGCCCCCGACGCAAAGTCAGACCGCCCCCTCTGAAACGCGTCGACCGGACCGACAAGCCTGCC
ACCCAAGTGGCCCAAGACTGCCACCCAAGCGAAGGCCGAGCCGCCGCCCC
>chr5B_1680
TTTTT-TT------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------TT---TTTGAAACGGAGGCAAAGATTGCCTCATCTATTAATTAAGCAGAAAGAGAATTGCCCAGTTAATTA
TGGAAAACCGGGCAAAAACCGGAACAACAAGGGCCAAGCCCACTCCCATAA---ACTGAAACACACAGGGCAAAGCCCAC
CCTCATCAACGACATGTCGACCTGCGGACAGACAACGCAGCTCCGATTCTGACGAAAAACTCAGAAGAACGAAACCAGGC
ACGGCTGGCGTCACGGAAG-ATCGCCGAAAG-GCCACATGCAGCCAGTCATCATACACCACAGGGCCTCGCCGCCGCAGC
TTCGACTCCATAGCAACAAACAAACCGAGGCAATACCGTGGACACGCCGAAGAAGAGCCGACTATCGCAACCATTGCCGC
GTCGCCGACATCGCTCCC-ACCATCATCGTTGCCACAGAAGTCTGGACGCCACCGTGATTCTCTCGGGGCCGCCGCCCCG
ACATCCACCGCTCCGTCGCGCCCAACGCAATCAACCGACACCACCTTCCGGGGCCGCCGCCCCGACATACCACCGCTCCG
CTCGAGCAGCAACGCCACACAACCCAGCTGCCCGCAGCCCACGCTGCCCAGGGCAACCGCTCGCAGACCACGAACGTCGC
ACCACATCCGGGGCCGCCGCC-CCGAAGCAAGGTCAGACCGCCCTCTCTGGAACGCGTCGACCGGACCGACAAGCCAGCC
ACCCAAGTGGACCAAGATTGCCACCCAAGC-AAGGCCGAGCCGTCACCCC
>chr7B_1681
TTTTTTTC------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------TT---TTCGAAACGGAGACAGAGATTGCCTCATCTATTAATAAAGTAGAA-GAGAATTGCCCAGTTAATTA
CGGAAAATCGGGCAAAAACCGGAACAACAAGGGCCAAGTCCACTCCCATAA---ACTGAAACACACAGGGCAAAGCCCAC
CCTCATCGACGACATGTCGACCTGCGGACAGACAACGCAGCTCCGGTTCTGACGAAAAACTCAAAAGAACGAAACCAGGC
ACGACTGGCGCCACGGAAG-ATCGCCGAAAG-GCCACAAGCAGCCAGTCATCGTACACCACAGGGCCTCGCCGCCGCAGC
TTCGACTCCATAGCAACAAACAAACCGAGGCAATACCGTGGACACGCCGGAGAAGAGCCGACTATCGCAACCATTGTCGC
GTCGCCGACATCGCTCCC-ACCATCATCGTTGCCACAGAAGTCTGGACGCCACCGCGATTCTCTCGGGGCCGCCGCCCCG
ACATCCACCGCTCCGTCGCGCCCAGCGCAATCAACCGGCACCACCTTCTGGGGCCGCCGCCCCGACATACCACCGCTCCG
CTCGAGCAGCAACGCCGCACAACCCAGCTGCCCGCAGCCCACGCTGCCCAGGGCAACCGCTCGCAGACCACGAACGTCGC
ACCACATCCGGGGCCGCCGCC-CCGACGCAAAGTCAGACCGCCCCCTCTGGAACGCGTCGACCGGACCGACAAGCCTGCC
ACCCAAGTGGCCCAAGATTGCCACCCAAGC-AAGGCCGAGCCGTCGCCCC
>chr5A_1684
AT-------------T----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------TTTT---TTCGAAATGGAGGCAAAGATTGCCTCATCTATTAATTAAGCAGAA-GAGAATTGCCTAGTTAATTA
CGGAAAACCGGGCAAAAACCGGAACAACAAGGGCCGAGCCCACTCCCATAG---ACTGAAACACACAAGGCAAAGCCCAC
CCTCCTCGACGACATGTCGACCTGCGGACAGACAACGCAACTCCGATTCTGACAGAGAACTCAGAAGAACGAAACCAGGC
ACGGCTGGCGTCATGGAAG-ATCGCCGAAAG-GCCACTTGCAACCAGTCATCGTATACCACAGGGCCTCGCCGCCGCAGC
TTCGACTCCACAGCAACAAACAAACCGAGGCAATACCGTGGACACGCCGGAGAAGAGCCGACTATCGCAACCATTACCGC
GTCGCCGACATCGCTCCC-ACCATCATCGTTGCCACAGAAGTCTGGACGCCACAGTGATTTTCTCGGGGCCGCCGCCCCG
ACATCCACCGCTCCGTCGCGCCCAGCGCAATCAACCGACACCACCTTCCGGAGCCGCCGCCCCGACGTACCACTGCT--G
CTCGAGCAGCAACGCCGCGCAACCCAGCTGCCCGCAGCCCACGCTGCTCAGGGCAACCGCTCGCAGACCACGAACGTCGC
ACCACATCCGGGGCCGCCGCC-CCGACGCAAAGTCAGACCGCCCCCTCTGGAACGCGTCGACCGGACCGACAAGCCTGCC
ACCCAAGTGGCCCAAGATTGCCACCCAAGTGAAGGCCGAGCCGCCGCCCC
>chr1A_1685
TTTTT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------T---TTTGAAAGGGAGGCAAAGATTGCCTCATCTATTAATTAAGCAGAA-GAGAATTGCCCAGTTAATTA
CGGAAAACCGGGCAAAAACCAGAACAACAAGGGCCGAGCCCACTCGCATAG---ACTGAAACACACAGGGCAAAGCCCAC
CCTTCTCGACAACATGTCGACCTGCGGACAGACAACGCAGCTCCGATTCTGACGGAGAACTCGGAAGAACGAAACCAGGC
ACGGCTGGCGCCACGGAAG-ATCGACGAAAG-GACACCTGGAACCAGTCATCGTATACCACAGGGCCTCGCCGCCGCAGC
TTCGACTCCACAGCAACAAACAAACCGAGGCAATATCGTGGACACGCCGGAGAAGAGCCGACTATCGCAACCATTGCCGC
GTCGCCGACATCGCTCCC-ACCATCATCGTTGCCACAGAAATCTGGACGCCACAGTGATTTTCTCGGGGCCGCCGCCCCG
ACATCCACCGCTCCGTCACGCCCAGCGCAATCAACCGGCATCACCTTCCGGGGCCGCCGCCCCGACGTACCACCGCTCCG
CTCGAGCAGCAACGCCGCGCGACCCAGCTGCCCGCAGCCCACGCTGCTCAAGGCAACCGCTCGCAGACCACGAACGTCGC
ACCACATCCGGGGCCGCCGCC-CCGACGCAAAGTCAGACCGCCCCCTCTGGAACGCGTCGACCGGACCGACAAGCCTGCC
ACCCAAGTGGCCCAAGATTGCCACCCAAGTGAAGGCCGAGCCACCGCCCC
>chr7B_1685
TT---TTT------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------TT---TTCGAAACGGAGGCAAAGATTGCCTCATCTATTAATTAAGCAGAA-GAGAATTGCCCAGTTAATTA
CGGAAAACCGGGCAAAAACCGGAACAACAAGGGCCAAGCCCACTCCCATAA---ACTGAAACACACAGGGCAAAGCCCAC
CCTCATCGACGACATGTCGACCTGCGGACAGACAACGCAGCTCCGATTCTGACGAAAAACTCAGAAGAACGAAACCAGGC
ACGGCTGGCGCCGCGGAAG-ATCGCCGAAAG-GCCACATGGAGCCAGTCATCGTACACCACAGGGCCTCGCCGCCGCAGC
TTCGACTCCATAGCAACAAACAAACCGAGGCAATACCGTGGACACGCCGGAGAAGAACCGACTATCGCAACCATTGCCGC
GTCGCCGACATCGCTCCC-ACCATCATTGTTGCCACAGAAGTCTGGACGCCACCGTGATTCTCTCGGGGCCGCCGCCCTG
ACATCCACCGCTCCGTCGCGCCCAGTGCAATCAACCGACACCACCTTCCGGGGCCGCCGCCCCGACATACCACCGCTCCG
CTCGAGCAGCAACGCCGCACAACCCAGCTGCCCGCAGCCCACGCTGCCCAGGGCAACCGCTCGCAGACCACGAACGTCGC
ACCACATCCGGGGCCGCCGCC-CCGACGCAAAGTCAGACCGCCCCCTCTGGAACGCGTCAACCGGACCGACAAGCCTGCC
ACCCAAGTGGCCCAAGATTGCCACCCAAGC-AAGGCCGAGCCGTCACCCC
>chr2B_1685
TT---TTT------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------TT---TTCGAAACCGAGGCAAAGTTTGCCTCGTCTATCAATAAAGCAGAA-GAGAATTGCCCAGTTAATTG
AGGAAAACCGGGCAAAAACCGGAACAACAAGGGCCAAGCCCACTCCCATAA---ACTGAAACACACAGGACAAAGCCCAC
CCTCATCGACGACATGTCGACCTGCGGACAGACAACGCAGCTCCGATTCTGACGAAAAACTCAGAAGAACGAAACAAGGC
ACGGCTGGCGCCACGGAAG-ATCGCCGAAAG-GCCACAAGCAGCCAGTCATCATACACCACAGGGCCTCGCCGCCGCAGC
TTCGACTCCATAGCAACAAACAAACCGAGGCAATACCGTGGACACGCAGGAGAAGAGCCGACTATCGCAACCATTGCCGC
GTCGCCGACATCGCTCCC-ACCATCATCGTTGCCACAGAAGTCTGGACGCCACCGTGATTCTCTCGGGGCCGCCGCCCCG
ACATCCACCGCTCCGTCGCGCCCAGCGCAATCAACCGGCACCACCTTCCGGGGCCGCCGCCACGACATACCACCGCTCCG
CTCGAGCAGCAACGCCGCACAACCCAGCTGCCCGCAGCCCACGCTGCCCAGAGCAACCGCTCGCAGACCACGAACGTCGC
ACCACATCCGGGGCCGCCGCC-CCGACGCAAAGTCAGATTGCCCCCTCTGGAACGCGTCGACCGGACCGACAAGCCTGCC
ACCCAAGTGGCCCAAGATTGCCACCCAAGC-AAGGCCGAGCCGTCGCCCC
>chr7A_1686
-TTTT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------T---TTCGAAACGGAGGCAAAGATTGCCTCATCTATTAATTAAGCAGAA-GAGAATTGCCCAGTTAATTA
CGGAAAATCGGGCAAAAACCGGAACAACAAGGGCCGAGCCCACTCTCATAG---ACTGAAACACACAGGGCAAAGCACAC
CCTCCTCGACAACATGTCCACCTGCGGACAGACAACACAACTCCGGTTCTGATGGAGAACTCAGAAGAATGAAACCAGGC
ACGGCTGGCGCCACGGAAG-ATCGCCGAAAG-GACACCTGGAACCAGTCATCGTATACCACAGGGCCTCGCCGCCGAAGC
TTCGACTCCACAGTAACAAACAAACCGAAGCAATATCGTGGACACGCCGGAGAAGAGCCGACTATCGCAACCATTGCCGC
GTCGCCGACATCGCTCCC-ACCATCATCGTTGCCACAGAAGTCTGG-CGCCACAGTGATTTTCTCGGGGCCGCCGCCCCA
ACATCCACCGCTCCGTCGCGCCCAGCGCAATCAACCGGCACCACCTTCCGGGGCCGCTGCCCCGACATACCACCGCTCCG
CTCCAGCAACAACGCCGCGCGACCCAGCTGCCCGCAGCCCACGCTGCTCAGGGCAACCACTCGTAGACCACGAACGTCGC
ACCACATCTGGGGCCACCGCC-CCGACGCAAAGTCAGACCGCCCCCTCTGGAACGCGTCGACCGGACCGACAAGCCTGCC
ACCCAAGTGGCCCAAGATTGCCACCCAAGTGAAGGCCGAGCCACCGCCCC
>chr7A_1690
TT------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------TTCGAAACGGAGGCAAAGATTGCCTCATCTATTAATTAAGCAGAA-GAGAATTGCCCAATTAATTA
CGGAAAACTGGGAAAAAACCGGAACAACAAGGGCCGAGCCCACTCCCATAG---ACTGAAACACACAGGGCAAAGCCGAC
CCTCCTCGACGACATGTCGACCTGCGGACAGACAACGCAGCTCCGATTCTGACGGAGAACTCAGAAGAACGAAACCAGGC
ACGA-TGGCGCCACGAAAG-ATCACTGAAAG-GACACCTGGAACCAGTCATCGTATACCACAGGGCCTCGCCGCCGCAGC
TTCGACTCCACAGCAACAAACAAACCGAGGCAATATCGTGGACACGCCGGAGAAGAGCCGACTATCGCAACCATTGTCGC
GTCGCCGACATCGCTCCC-ACCATCATCGTTGCCACAGAAGTCTGGACGCCACAGTGATTTTCTCGGGGCCGCCGCCCCG
ACATCCACCGCTCCGTCGCGCCCAGCGCATTCAACCGGCACCACCTTCCGGGGCCGCCGCCCCGACGTACCACCGCTCCG
CTCGAGCAGCAACGCCGCGCGACCCAGCTGCCCGCAGCCGACGCTGCTCAGGGCAACCGCTCGCAGACCACGAACGTCGC
ACCACATCCGGGGCCGCCGCC-CCGACGCAAAGTCAGACCGCCCCCTCTAGAACCCGTCAACCGGACCGACAAGCCTGCA
ACCCAAGTGGCCCAAGATTGCCACCCAAGTGAAGGCCGAGCCACCGCCCC
>SNPs
SS-SSSS--SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---
---S---S--------------------------------------------------SSSSSSSS--------------
---------------------S-------------------S--------------------------------------
------------------------------------------------S---------------------S-------S-
---------------------S----------S--------------------------------------------S--
-------------S------------S----------S---------------SS------S------------------
----------------------------------------------S-------------------------------S-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------S----------------------------------------S--------------------
----------------------------------------------------------------S-------------S-
-S----------------------------------------S----------------------------------S--
---S------------S--------S------------------------------------------------------
-------------------S------S-----SS-SS------------------------------------------S
SSSSSSS-------------------------------------------------------------------------
-----------SSS--------S-------------------------------------S-S-----------------
------------------------------------------------------------S-------------------
----S-------------------------S------------------------------S------------------
-----------S--------------------------------------------------------------------
-------------------------------------------------------------------------S------
-----------------------------------S-----------S---------------S----------------
----------S---------------------------------------------------------------------
--------------------------------------------------------------------------------
---------S------S---------------------------------------------------------------
-----------------------------------S--------------
>forward_432
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------GCGCTCGATCACACAATGAC------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------
>reverse_1687
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------GCTTGGATGCCCTGCTATAGT-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------
