Multiple sequence alignment - TraesCS3D01G170600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G170600 chr3D 100.000 3206 0 0 1 3206 149608055 149611260 0.000000e+00 5921.0
1 TraesCS3D01G170600 chr3D 78.442 886 151 23 1445 2306 147321675 147322544 2.810000e-150 542.0
2 TraesCS3D01G170600 chr3D 81.991 211 30 5 2953 3157 149234704 149234496 4.250000e-39 172.0
3 TraesCS3D01G170600 chr3D 81.977 172 24 6 1445 1611 147323720 147323889 4.310000e-29 139.0
4 TraesCS3D01G170600 chr3D 80.226 177 26 6 3018 3190 147324920 147325091 1.210000e-24 124.0
5 TraesCS3D01G170600 chr3D 81.884 138 21 2 2810 2945 149235231 149235096 2.610000e-21 113.0
6 TraesCS3D01G170600 chr3D 81.119 143 20 5 2810 2948 147324353 147324492 1.220000e-19 108.0
7 TraesCS3D01G170600 chr3D 89.831 59 3 2 2847 2905 149758382 149758437 4.440000e-09 73.1
8 TraesCS3D01G170600 chr3A 95.642 1790 58 9 1367 3150 167883954 167885729 0.000000e+00 2856.0
9 TraesCS3D01G170600 chr3A 88.519 601 52 9 41 635 167676393 167676982 0.000000e+00 712.0
10 TraesCS3D01G170600 chr3A 91.961 510 26 6 751 1247 167877081 167877588 0.000000e+00 701.0
11 TraesCS3D01G170600 chr3A 95.455 132 6 0 1245 1376 167883645 167883776 9.010000e-51 211.0
12 TraesCS3D01G170600 chr3A 86.441 59 5 2 2847 2905 181136697 181136642 9.600000e-06 62.1
13 TraesCS3D01G170600 chr3B 81.944 360 53 8 2813 3164 215589699 215589344 8.700000e-76 294.0
14 TraesCS3D01G170600 chr3B 94.872 39 2 0 8 46 89170316 89170278 9.600000e-06 62.1
15 TraesCS3D01G170600 chr7D 84.848 66 9 1 2712 2777 182201259 182201195 7.420000e-07 65.8
16 TraesCS3D01G170600 chr1D 92.857 42 2 1 10 50 51558083 51558124 3.450000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G170600 chr3D 149608055 149611260 3205 False 5921.00 5921 100.0000 1 3206 1 chr3D.!!$F1 3205
1 TraesCS3D01G170600 chr3D 147321675 147325091 3416 False 228.25 542 80.4410 1445 3190 4 chr3D.!!$F3 1745
2 TraesCS3D01G170600 chr3A 167883645 167885729 2084 False 1533.50 2856 95.5485 1245 3150 2 chr3A.!!$F3 1905
3 TraesCS3D01G170600 chr3A 167676393 167676982 589 False 712.00 712 88.5190 41 635 1 chr3A.!!$F1 594
4 TraesCS3D01G170600 chr3A 167877081 167877588 507 False 701.00 701 91.9610 751 1247 1 chr3A.!!$F2 496


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
554 561 0.040425 CGGCAGAACGAAAACAAGGG 60.040 55.0 0.00 0.00 35.47 3.95 F
635 642 0.109504 CGTGGGGTGCGTAAATTTGG 60.110 55.0 0.00 0.00 0.00 3.28 F
1459 1665 0.371645 CGGCGATGAAGTCTTCAAGC 59.628 55.0 25.86 25.86 43.95 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1440 1646 0.371645 GCTTGAAGACTTCATCGCCG 59.628 55.0 18.38 6.65 39.84 6.46 R
1593 1807 0.610232 ACCTGCAATGGTTCTCTGCC 60.610 55.0 0.00 0.00 36.89 4.85 R
2710 4379 0.322456 TTGCCTCACCTAAGCGCATT 60.322 50.0 11.47 3.50 0.00 3.56 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.712056 ATGCACTATAGCCCGTACCA 58.288 50.000 0.00 0.00 0.00 3.25
20 21 1.487300 TGCACTATAGCCCGTACCAA 58.513 50.000 0.00 0.00 0.00 3.67
21 22 1.137479 TGCACTATAGCCCGTACCAAC 59.863 52.381 0.00 0.00 0.00 3.77
31 32 2.744709 GTACCAACGCACGGGCAT 60.745 61.111 11.77 0.00 41.24 4.40
32 33 2.032834 TACCAACGCACGGGCATT 59.967 55.556 11.77 0.00 41.24 3.56
33 34 2.036006 TACCAACGCACGGGCATTC 61.036 57.895 11.77 0.00 41.24 2.67
34 35 2.457743 TACCAACGCACGGGCATTCT 62.458 55.000 11.77 0.00 41.24 2.40
35 36 1.743623 CCAACGCACGGGCATTCTA 60.744 57.895 11.77 0.00 41.24 2.10
36 37 1.423845 CAACGCACGGGCATTCTAC 59.576 57.895 11.77 0.00 41.24 2.59
37 38 1.019278 CAACGCACGGGCATTCTACT 61.019 55.000 11.77 0.00 41.24 2.57
38 39 0.533491 AACGCACGGGCATTCTACTA 59.467 50.000 11.77 0.00 41.24 1.82
39 40 0.102481 ACGCACGGGCATTCTACTAG 59.898 55.000 11.77 0.00 41.24 2.57
45 46 4.739735 GCACGGGCATTCTACTAGTATTGT 60.740 45.833 3.77 0.00 40.72 2.71
68 69 5.908499 GTGTAAGAGATAACTCGACCGATTC 59.092 44.000 5.90 0.00 46.64 2.52
81 82 7.490000 ACTCGACCGATTCTTAGTCATTAATT 58.510 34.615 0.00 0.00 0.00 1.40
86 87 7.472543 ACCGATTCTTAGTCATTAATTGTTGC 58.527 34.615 0.00 0.00 0.00 4.17
90 91 5.627172 TCTTAGTCATTAATTGTTGCACGC 58.373 37.500 0.00 0.00 0.00 5.34
99 100 3.552604 ATTGTTGCACGCGAAACTAAT 57.447 38.095 15.93 12.73 0.00 1.73
110 111 6.940597 GCACGCGAAACTAATAAAATGAAAAC 59.059 34.615 15.93 0.00 0.00 2.43
134 138 5.535406 CGACTATGGACTACCCTTTGATAGT 59.465 44.000 0.00 0.00 34.93 2.12
152 156 9.601810 TTTGATAGTAGAGATAATAGCCCTCAA 57.398 33.333 0.00 0.00 0.00 3.02
157 163 4.967036 AGAGATAATAGCCCTCAAAGTGC 58.033 43.478 0.00 0.00 0.00 4.40
175 181 2.601299 GGGTGGGCCAACCTATCC 59.399 66.667 33.74 16.80 41.12 2.59
183 189 1.887707 CCAACCTATCCCGCGCTTC 60.888 63.158 5.56 0.00 0.00 3.86
228 234 4.443034 GGGACATTCAGCCTTCTATACGTT 60.443 45.833 0.00 0.00 0.00 3.99
233 239 9.472361 GACATTCAGCCTTCTATACGTTTTATA 57.528 33.333 0.00 0.00 0.00 0.98
384 390 7.840342 TGTGTGTTTTAAAAATGTCTGCAAT 57.160 28.000 1.31 0.00 0.00 3.56
385 391 8.261492 TGTGTGTTTTAAAAATGTCTGCAATT 57.739 26.923 1.31 0.00 0.00 2.32
519 526 9.733556 ATAATAATATCCACGCCTGTATGAAAA 57.266 29.630 0.00 0.00 0.00 2.29
522 529 2.276201 TCCACGCCTGTATGAAAATCG 58.724 47.619 0.00 0.00 0.00 3.34
526 533 3.804325 CACGCCTGTATGAAAATCGAGAT 59.196 43.478 0.00 0.00 0.00 2.75
534 541 9.922305 CCTGTATGAAAATCGAGATAGAAAAAC 57.078 33.333 0.00 0.00 0.00 2.43
539 546 3.536956 ATCGAGATAGAAAAACCGGCA 57.463 42.857 0.00 0.00 0.00 5.69
544 551 3.000727 AGATAGAAAAACCGGCAGAACG 58.999 45.455 0.00 0.00 0.00 3.95
552 559 0.661020 ACCGGCAGAACGAAAACAAG 59.339 50.000 0.00 0.00 35.47 3.16
554 561 0.040425 CGGCAGAACGAAAACAAGGG 60.040 55.000 0.00 0.00 35.47 3.95
555 562 0.313987 GGCAGAACGAAAACAAGGGG 59.686 55.000 0.00 0.00 0.00 4.79
561 568 3.958147 AGAACGAAAACAAGGGGAAACAT 59.042 39.130 0.00 0.00 0.00 2.71
563 570 3.028130 ACGAAAACAAGGGGAAACATGT 58.972 40.909 0.00 0.00 0.00 3.21
598 605 1.218316 GCCCACGTCTAGGAGTTGG 59.782 63.158 0.00 0.00 0.00 3.77
635 642 0.109504 CGTGGGGTGCGTAAATTTGG 60.110 55.000 0.00 0.00 0.00 3.28
636 643 1.249407 GTGGGGTGCGTAAATTTGGA 58.751 50.000 0.00 0.00 0.00 3.53
637 644 1.614413 GTGGGGTGCGTAAATTTGGAA 59.386 47.619 0.00 0.00 0.00 3.53
638 645 1.614413 TGGGGTGCGTAAATTTGGAAC 59.386 47.619 0.00 0.00 0.00 3.62
639 646 1.067425 GGGGTGCGTAAATTTGGAACC 60.067 52.381 11.14 11.14 31.57 3.62
640 647 1.067425 GGGTGCGTAAATTTGGAACCC 60.067 52.381 19.21 19.21 39.09 4.11
641 648 1.890489 GGTGCGTAAATTTGGAACCCT 59.110 47.619 9.17 0.00 0.00 4.34
642 649 3.083293 GGTGCGTAAATTTGGAACCCTA 58.917 45.455 9.17 0.00 0.00 3.53
643 650 3.506844 GGTGCGTAAATTTGGAACCCTAA 59.493 43.478 9.17 0.00 0.00 2.69
644 651 4.478699 GTGCGTAAATTTGGAACCCTAAC 58.521 43.478 0.00 0.00 0.00 2.34
645 652 3.188873 TGCGTAAATTTGGAACCCTAACG 59.811 43.478 0.00 0.47 0.00 3.18
646 653 3.436359 GCGTAAATTTGGAACCCTAACGA 59.564 43.478 0.00 0.00 0.00 3.85
647 654 4.083377 GCGTAAATTTGGAACCCTAACGAA 60.083 41.667 0.00 0.00 0.00 3.85
648 655 5.562501 GCGTAAATTTGGAACCCTAACGAAA 60.563 40.000 0.00 0.00 0.00 3.46
649 656 6.437094 CGTAAATTTGGAACCCTAACGAAAA 58.563 36.000 0.00 0.00 0.00 2.29
650 657 6.360414 CGTAAATTTGGAACCCTAACGAAAAC 59.640 38.462 0.00 0.00 0.00 2.43
651 658 5.855740 AATTTGGAACCCTAACGAAAACA 57.144 34.783 0.00 0.00 0.00 2.83
652 659 4.904253 TTTGGAACCCTAACGAAAACAG 57.096 40.909 0.00 0.00 0.00 3.16
653 660 3.842007 TGGAACCCTAACGAAAACAGA 57.158 42.857 0.00 0.00 0.00 3.41
654 661 4.360951 TGGAACCCTAACGAAAACAGAT 57.639 40.909 0.00 0.00 0.00 2.90
655 662 4.069304 TGGAACCCTAACGAAAACAGATG 58.931 43.478 0.00 0.00 0.00 2.90
656 663 3.119955 GGAACCCTAACGAAAACAGATGC 60.120 47.826 0.00 0.00 0.00 3.91
657 664 3.134574 ACCCTAACGAAAACAGATGCA 57.865 42.857 0.00 0.00 0.00 3.96
658 665 3.686016 ACCCTAACGAAAACAGATGCAT 58.314 40.909 0.00 0.00 0.00 3.96
659 666 4.839121 ACCCTAACGAAAACAGATGCATA 58.161 39.130 0.00 0.00 0.00 3.14
660 667 4.634443 ACCCTAACGAAAACAGATGCATAC 59.366 41.667 0.00 0.00 0.00 2.39
661 668 4.876107 CCCTAACGAAAACAGATGCATACT 59.124 41.667 0.00 0.00 0.00 2.12
662 669 5.354234 CCCTAACGAAAACAGATGCATACTT 59.646 40.000 0.00 0.00 0.00 2.24
663 670 6.128007 CCCTAACGAAAACAGATGCATACTTT 60.128 38.462 0.00 0.00 0.00 2.66
664 671 6.961554 CCTAACGAAAACAGATGCATACTTTC 59.038 38.462 0.00 5.78 0.00 2.62
665 672 5.296813 ACGAAAACAGATGCATACTTTCC 57.703 39.130 0.00 0.00 0.00 3.13
666 673 5.003804 ACGAAAACAGATGCATACTTTCCT 58.996 37.500 0.00 0.00 0.00 3.36
667 674 5.473504 ACGAAAACAGATGCATACTTTCCTT 59.526 36.000 0.00 0.00 0.00 3.36
668 675 6.016276 ACGAAAACAGATGCATACTTTCCTTT 60.016 34.615 0.00 0.00 0.00 3.11
669 676 6.306356 CGAAAACAGATGCATACTTTCCTTTG 59.694 38.462 0.00 0.00 0.00 2.77
670 677 6.655078 AAACAGATGCATACTTTCCTTTGT 57.345 33.333 0.00 0.00 0.00 2.83
671 678 6.655078 AACAGATGCATACTTTCCTTTGTT 57.345 33.333 0.00 0.00 0.00 2.83
672 679 6.655078 ACAGATGCATACTTTCCTTTGTTT 57.345 33.333 0.00 0.00 0.00 2.83
673 680 6.681777 ACAGATGCATACTTTCCTTTGTTTC 58.318 36.000 0.00 0.00 0.00 2.78
674 681 6.265196 ACAGATGCATACTTTCCTTTGTTTCA 59.735 34.615 0.00 0.00 0.00 2.69
675 682 7.147312 CAGATGCATACTTTCCTTTGTTTCAA 58.853 34.615 0.00 0.00 0.00 2.69
676 683 7.652909 CAGATGCATACTTTCCTTTGTTTCAAA 59.347 33.333 0.00 0.00 0.00 2.69
677 684 8.203485 AGATGCATACTTTCCTTTGTTTCAAAA 58.797 29.630 0.00 0.00 0.00 2.44
678 685 8.729805 ATGCATACTTTCCTTTGTTTCAAAAA 57.270 26.923 0.00 0.00 0.00 1.94
705 712 7.622893 AAAAGATGCATACTTTCCTTCTCTC 57.377 36.000 18.32 0.00 36.71 3.20
706 713 5.289083 AGATGCATACTTTCCTTCTCTCC 57.711 43.478 0.00 0.00 0.00 3.71
707 714 3.914426 TGCATACTTTCCTTCTCTCCC 57.086 47.619 0.00 0.00 0.00 4.30
708 715 2.505819 TGCATACTTTCCTTCTCTCCCC 59.494 50.000 0.00 0.00 0.00 4.81
709 716 2.158740 GCATACTTTCCTTCTCTCCCCC 60.159 54.545 0.00 0.00 0.00 5.40
727 734 3.576861 CCCCCAAAAAGAAGACTTTCCT 58.423 45.455 0.00 0.00 44.32 3.36
728 735 3.967326 CCCCCAAAAAGAAGACTTTCCTT 59.033 43.478 0.00 0.00 44.32 3.36
729 736 4.408921 CCCCCAAAAAGAAGACTTTCCTTT 59.591 41.667 0.00 0.00 44.32 3.11
730 737 5.600898 CCCCCAAAAAGAAGACTTTCCTTTA 59.399 40.000 3.12 0.00 44.32 1.85
731 738 6.462487 CCCCCAAAAAGAAGACTTTCCTTTAC 60.462 42.308 3.12 0.00 44.32 2.01
732 739 6.323996 CCCCAAAAAGAAGACTTTCCTTTACT 59.676 38.462 3.12 0.00 44.32 2.24
733 740 7.504574 CCCCAAAAAGAAGACTTTCCTTTACTA 59.495 37.037 3.12 0.00 44.32 1.82
734 741 8.568794 CCCAAAAAGAAGACTTTCCTTTACTAG 58.431 37.037 3.12 0.00 44.32 2.57
735 742 9.338622 CCAAAAAGAAGACTTTCCTTTACTAGA 57.661 33.333 0.00 0.00 44.32 2.43
737 744 9.562408 AAAAAGAAGACTTTCCTTTACTAGAGG 57.438 33.333 0.00 0.00 44.32 3.69
738 745 6.288941 AGAAGACTTTCCTTTACTAGAGGC 57.711 41.667 0.00 0.00 33.64 4.70
739 746 5.780793 AGAAGACTTTCCTTTACTAGAGGCA 59.219 40.000 0.00 0.00 33.64 4.75
740 747 6.270231 AGAAGACTTTCCTTTACTAGAGGCAA 59.730 38.462 0.00 0.00 33.64 4.52
741 748 6.628644 AGACTTTCCTTTACTAGAGGCAAT 57.371 37.500 0.00 0.00 34.17 3.56
742 749 7.735326 AGACTTTCCTTTACTAGAGGCAATA 57.265 36.000 0.00 0.00 34.17 1.90
743 750 8.147244 AGACTTTCCTTTACTAGAGGCAATAA 57.853 34.615 0.00 0.00 34.17 1.40
744 751 8.603304 AGACTTTCCTTTACTAGAGGCAATAAA 58.397 33.333 0.00 0.00 34.17 1.40
745 752 9.397280 GACTTTCCTTTACTAGAGGCAATAAAT 57.603 33.333 0.00 0.00 34.17 1.40
775 782 7.516450 AATAGGAAATTCCAGGAGAGAGAAA 57.484 36.000 15.21 0.00 39.61 2.52
781 788 2.701551 TCCAGGAGAGAGAAAAACCCA 58.298 47.619 0.00 0.00 0.00 4.51
795 802 2.271944 AACCCAAGAAACCTCTTCGG 57.728 50.000 0.00 0.00 43.56 4.30
856 868 1.977293 CTCCTAGCCAGCCCCTTCAC 61.977 65.000 0.00 0.00 0.00 3.18
870 882 0.610687 CTTCACCTCTTCGGGCTTCT 59.389 55.000 0.00 0.00 36.97 2.85
872 884 0.832135 TCACCTCTTCGGGCTTCTGT 60.832 55.000 0.00 0.00 36.97 3.41
922 934 1.054231 TAGGCATCCTGCTCCATCTG 58.946 55.000 0.00 0.00 44.28 2.90
937 949 3.776969 TCCATCTGAACTTGCCTCTACAT 59.223 43.478 0.00 0.00 0.00 2.29
976 995 4.746115 CACATTGGAACACTGAACAATTGG 59.254 41.667 10.83 0.00 41.82 3.16
1068 1087 1.518133 CCTGCGCTCCTTCTTCTCG 60.518 63.158 9.73 0.00 0.00 4.04
1070 1089 0.800300 CTGCGCTCCTTCTTCTCGAC 60.800 60.000 9.73 0.00 0.00 4.20
1071 1090 1.870016 GCGCTCCTTCTTCTCGACG 60.870 63.158 0.00 0.00 0.00 5.12
1072 1091 1.870016 CGCTCCTTCTTCTCGACGC 60.870 63.158 0.00 0.00 0.00 5.19
1075 1094 3.241059 CCTTCTTCTCGACGCGCG 61.241 66.667 30.96 30.96 42.69 6.86
1140 1159 1.736032 GCGCTGGACGAGAAGTACATT 60.736 52.381 0.00 0.00 44.00 2.71
1184 1203 0.904865 ACGGTGCTCTCCAAGATCCA 60.905 55.000 0.00 0.00 0.00 3.41
1251 1270 1.448013 GTCCTACCAGCTTCCGTGC 60.448 63.158 0.00 0.00 0.00 5.34
1253 1272 2.509336 CTACCAGCTTCCGTGCCG 60.509 66.667 0.00 0.00 0.00 5.69
1254 1273 3.296709 CTACCAGCTTCCGTGCCGT 62.297 63.158 0.00 0.00 0.00 5.68
1275 1294 4.814294 CCGGGGCAGCACGAGTAC 62.814 72.222 10.02 0.00 0.00 2.73
1434 1640 1.403972 GCTCGTTTAGCGACGGTCTG 61.404 60.000 1.23 1.33 45.68 3.51
1459 1665 0.371645 CGGCGATGAAGTCTTCAAGC 59.628 55.000 25.86 25.86 43.95 4.01
1593 1807 6.016527 CACTGATATTCACAATGGAAGATGGG 60.017 42.308 0.00 0.00 29.45 4.00
1674 1888 7.201145 TCTCTAATATTACTGTCGAACAAGGC 58.799 38.462 0.00 0.00 0.00 4.35
1679 1893 1.082756 CTGTCGAACAAGGCGCAAC 60.083 57.895 10.83 0.00 0.00 4.17
1779 1993 3.127533 GTGGTCATGACAGGCGGC 61.128 66.667 26.47 0.00 0.00 6.53
1854 2068 1.552337 CTGTCTGTCCCTGTGTATGCT 59.448 52.381 0.00 0.00 0.00 3.79
1912 2126 7.444183 TCTTTTGTACCTACAAGTTTGGATCAG 59.556 37.037 0.00 0.00 45.77 2.90
2118 2341 4.314522 TTTCATGATGAACAGGGGCTTA 57.685 40.909 7.48 0.00 35.89 3.09
2254 2477 6.155475 AGAGAGACATCTATGTAGTTTGCC 57.845 41.667 0.00 0.00 41.95 4.52
2396 4065 6.791887 TCTATATGACATTAAGCAGCTTGC 57.208 37.500 18.54 0.00 45.46 4.01
2461 4130 4.019411 TGGCTCACCTGAAATCAGATTGTA 60.019 41.667 11.94 0.00 46.59 2.41
2465 4134 6.541641 GCTCACCTGAAATCAGATTGTAAGAT 59.458 38.462 11.94 0.00 46.59 2.40
2467 4136 7.623630 TCACCTGAAATCAGATTGTAAGATGA 58.376 34.615 11.94 0.00 46.59 2.92
2468 4137 7.767659 TCACCTGAAATCAGATTGTAAGATGAG 59.232 37.037 11.94 0.00 46.59 2.90
2469 4138 6.541641 ACCTGAAATCAGATTGTAAGATGAGC 59.458 38.462 11.94 0.00 46.59 4.26
2470 4139 6.541278 CCTGAAATCAGATTGTAAGATGAGCA 59.459 38.462 11.94 0.00 46.59 4.26
2472 4141 8.515695 TGAAATCAGATTGTAAGATGAGCATT 57.484 30.769 0.00 0.00 0.00 3.56
2477 4146 5.747197 CAGATTGTAAGATGAGCATTTTGGC 59.253 40.000 0.00 0.00 0.00 4.52
2480 4149 3.444742 TGTAAGATGAGCATTTTGGCAGG 59.555 43.478 0.00 0.00 35.83 4.85
2581 4250 6.642733 AAGGATGTCCCCATACCATATTAG 57.357 41.667 0.00 0.00 31.63 1.73
2709 4378 0.250295 TCTGCGCTTAAGTGTGCCTT 60.250 50.000 17.00 0.00 42.20 4.35
2710 4379 1.001520 TCTGCGCTTAAGTGTGCCTTA 59.998 47.619 17.00 0.00 42.20 2.69
2715 4386 2.785679 GCTTAAGTGTGCCTTAATGCG 58.214 47.619 4.02 0.00 43.07 4.73
2749 4420 1.944709 AGTGTTAGGCGGTGTCAAAAC 59.055 47.619 0.00 0.00 0.00 2.43
2824 4527 5.472137 TCCTTTTAACCTCCATGTTTCTTCG 59.528 40.000 0.00 0.00 0.00 3.79
2843 4548 4.682778 TCGGACCATATTTCTGTAAGGG 57.317 45.455 0.00 0.00 0.00 3.95
2945 4650 5.304101 TCAGTTTGAGTTTGGGCAACAATAT 59.696 36.000 0.00 0.00 39.21 1.28
3014 5103 9.502091 GCATGTATTGTTATTTATCTCCCACTA 57.498 33.333 0.00 0.00 0.00 2.74
3077 5166 9.424319 CTGAAGTAGTCAAGCATCTTTTTACTA 57.576 33.333 0.00 0.00 35.22 1.82
3078 5167 9.204570 TGAAGTAGTCAAGCATCTTTTTACTAC 57.795 33.333 0.00 0.00 38.59 2.73
3190 5283 1.900486 ACACCTAGTAGGCCAACACTC 59.100 52.381 16.61 0.00 39.63 3.51
3191 5284 1.899814 CACCTAGTAGGCCAACACTCA 59.100 52.381 16.61 0.00 39.63 3.41
3192 5285 1.900486 ACCTAGTAGGCCAACACTCAC 59.100 52.381 16.61 0.00 39.63 3.51
3193 5286 2.180276 CCTAGTAGGCCAACACTCACT 58.820 52.381 5.01 0.00 0.00 3.41
3194 5287 3.245514 ACCTAGTAGGCCAACACTCACTA 60.246 47.826 16.61 0.00 39.63 2.74
3195 5288 3.130693 CCTAGTAGGCCAACACTCACTAC 59.869 52.174 5.01 0.00 35.45 2.73
3196 5289 1.900486 AGTAGGCCAACACTCACTACC 59.100 52.381 5.01 0.00 35.74 3.18
3197 5290 1.900486 GTAGGCCAACACTCACTACCT 59.100 52.381 5.01 0.00 0.00 3.08
3198 5291 1.435256 AGGCCAACACTCACTACCTT 58.565 50.000 5.01 0.00 0.00 3.50
3199 5292 1.072331 AGGCCAACACTCACTACCTTG 59.928 52.381 5.01 0.00 0.00 3.61
3200 5293 1.071699 GGCCAACACTCACTACCTTGA 59.928 52.381 0.00 0.00 0.00 3.02
3202 5295 2.037251 GCCAACACTCACTACCTTGAGA 59.963 50.000 7.12 0.00 45.19 3.27
3203 5296 3.494398 GCCAACACTCACTACCTTGAGAA 60.494 47.826 7.12 0.00 45.19 2.87
3204 5297 4.058817 CCAACACTCACTACCTTGAGAAC 58.941 47.826 7.12 0.00 45.19 3.01
3205 5298 4.442893 CCAACACTCACTACCTTGAGAACA 60.443 45.833 7.12 0.00 45.19 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.137479 GTTGGTACGGGCTATAGTGCA 59.863 52.381 0.84 0.00 34.04 4.57
2 3 1.861971 GTTGGTACGGGCTATAGTGC 58.138 55.000 0.84 0.00 0.00 4.40
3 4 2.129823 CGTTGGTACGGGCTATAGTG 57.870 55.000 0.84 0.00 43.94 2.74
6 7 3.531934 CGTGCGTTGGTACGGGCTATA 62.532 57.143 0.00 0.00 46.60 1.31
7 8 2.894240 CGTGCGTTGGTACGGGCTAT 62.894 60.000 0.00 0.00 46.60 2.97
8 9 3.629883 CGTGCGTTGGTACGGGCTA 62.630 63.158 0.00 0.00 46.60 3.93
14 15 2.248274 GAATGCCCGTGCGTTGGTAC 62.248 60.000 0.86 0.00 46.55 3.34
15 16 2.032834 AATGCCCGTGCGTTGGTA 59.967 55.556 0.00 0.00 44.90 3.25
16 17 2.457743 TAGAATGCCCGTGCGTTGGT 62.458 55.000 0.86 0.00 46.55 3.67
17 18 1.743623 TAGAATGCCCGTGCGTTGG 60.744 57.895 0.86 0.00 46.55 3.77
18 19 1.019278 AGTAGAATGCCCGTGCGTTG 61.019 55.000 0.86 0.00 46.55 4.10
20 21 0.102481 CTAGTAGAATGCCCGTGCGT 59.898 55.000 0.00 0.00 41.78 5.24
21 22 0.102481 ACTAGTAGAATGCCCGTGCG 59.898 55.000 3.59 0.00 41.78 5.34
22 23 3.662247 ATACTAGTAGAATGCCCGTGC 57.338 47.619 8.85 0.00 38.26 5.34
23 24 4.745125 CACAATACTAGTAGAATGCCCGTG 59.255 45.833 8.85 3.34 0.00 4.94
24 25 4.404715 ACACAATACTAGTAGAATGCCCGT 59.595 41.667 8.85 3.96 0.00 5.28
25 26 4.945246 ACACAATACTAGTAGAATGCCCG 58.055 43.478 8.85 3.44 0.00 6.13
26 27 7.723324 TCTTACACAATACTAGTAGAATGCCC 58.277 38.462 8.85 0.00 0.00 5.36
27 28 8.630917 TCTCTTACACAATACTAGTAGAATGCC 58.369 37.037 8.85 0.00 0.00 4.40
35 36 9.610705 TCGAGTTATCTCTTACACAATACTAGT 57.389 33.333 0.00 0.00 38.45 2.57
36 37 9.866936 GTCGAGTTATCTCTTACACAATACTAG 57.133 37.037 0.00 0.00 38.45 2.57
37 38 8.834465 GGTCGAGTTATCTCTTACACAATACTA 58.166 37.037 0.00 0.00 38.45 1.82
38 39 7.466996 CGGTCGAGTTATCTCTTACACAATACT 60.467 40.741 0.00 0.00 38.45 2.12
39 40 6.632035 CGGTCGAGTTATCTCTTACACAATAC 59.368 42.308 0.00 0.00 38.45 1.89
45 46 5.821470 AGAATCGGTCGAGTTATCTCTTACA 59.179 40.000 0.00 0.00 38.45 2.41
68 69 4.491942 CGCGTGCAACAATTAATGACTAAG 59.508 41.667 0.00 0.00 35.74 2.18
81 82 4.469625 TTTATTAGTTTCGCGTGCAACA 57.530 36.364 13.75 0.00 35.74 3.33
86 87 7.058580 TCGTTTTCATTTTATTAGTTTCGCGTG 59.941 33.333 5.77 0.00 0.00 5.34
99 100 7.550196 GGGTAGTCCATAGTCGTTTTCATTTTA 59.450 37.037 0.00 0.00 35.00 1.52
110 111 4.939052 ATCAAAGGGTAGTCCATAGTCG 57.061 45.455 0.00 0.00 38.24 4.18
134 138 5.279006 CGCACTTTGAGGGCTATTATCTCTA 60.279 44.000 0.27 0.00 44.04 2.43
157 163 2.192175 GATAGGTTGGCCCACCCG 59.808 66.667 22.18 0.00 37.58 5.28
175 181 1.065031 CGAAAATGTTGGAAGCGCGG 61.065 55.000 8.83 0.00 0.00 6.46
183 189 2.736192 GCCATTTGACCGAAAATGTTGG 59.264 45.455 13.53 5.33 43.17 3.77
356 362 8.559536 TGCAGACATTTTTAAAACACACAAAAA 58.440 25.926 0.00 0.00 36.06 1.94
357 363 8.087982 TGCAGACATTTTTAAAACACACAAAA 57.912 26.923 0.00 0.00 0.00 2.44
358 364 7.658179 TGCAGACATTTTTAAAACACACAAA 57.342 28.000 0.00 0.00 0.00 2.83
359 365 7.658179 TTGCAGACATTTTTAAAACACACAA 57.342 28.000 0.00 0.00 0.00 3.33
360 366 7.840342 ATTGCAGACATTTTTAAAACACACA 57.160 28.000 0.00 0.00 0.00 3.72
361 367 9.553418 AAAATTGCAGACATTTTTAAAACACAC 57.447 25.926 0.00 0.00 37.50 3.82
500 507 4.055360 CGATTTTCATACAGGCGTGGATA 58.945 43.478 11.67 0.00 0.00 2.59
507 514 7.715265 TTTCTATCTCGATTTTCATACAGGC 57.285 36.000 0.00 0.00 0.00 4.85
509 516 9.922305 GGTTTTTCTATCTCGATTTTCATACAG 57.078 33.333 0.00 0.00 0.00 2.74
510 517 8.600625 CGGTTTTTCTATCTCGATTTTCATACA 58.399 33.333 0.00 0.00 0.00 2.29
519 526 3.132289 TCTGCCGGTTTTTCTATCTCGAT 59.868 43.478 1.90 0.00 0.00 3.59
522 529 3.062234 CGTTCTGCCGGTTTTTCTATCTC 59.938 47.826 1.90 0.00 0.00 2.75
526 533 2.529780 TCGTTCTGCCGGTTTTTCTA 57.470 45.000 1.90 0.00 0.00 2.10
534 541 0.040425 CCTTGTTTTCGTTCTGCCGG 60.040 55.000 0.00 0.00 0.00 6.13
539 546 3.358118 TGTTTCCCCTTGTTTTCGTTCT 58.642 40.909 0.00 0.00 0.00 3.01
544 551 3.133901 ACCACATGTTTCCCCTTGTTTTC 59.866 43.478 0.00 0.00 0.00 2.29
552 559 3.828875 TTTTTCACCACATGTTTCCCC 57.171 42.857 0.00 0.00 0.00 4.81
574 581 1.105167 TCCTAGACGTGGGCATACCG 61.105 60.000 0.00 0.00 44.64 4.02
583 590 0.108615 CAGCCCAACTCCTAGACGTG 60.109 60.000 0.00 0.00 0.00 4.49
585 592 1.517832 CCAGCCCAACTCCTAGACG 59.482 63.158 0.00 0.00 0.00 4.18
621 628 1.890489 AGGGTTCCAAATTTACGCACC 59.110 47.619 8.74 4.25 0.00 5.01
625 632 5.610235 TTCGTTAGGGTTCCAAATTTACG 57.390 39.130 0.00 0.00 0.00 3.18
635 642 3.500680 TGCATCTGTTTTCGTTAGGGTTC 59.499 43.478 0.00 0.00 0.00 3.62
636 643 3.482436 TGCATCTGTTTTCGTTAGGGTT 58.518 40.909 0.00 0.00 0.00 4.11
637 644 3.134574 TGCATCTGTTTTCGTTAGGGT 57.865 42.857 0.00 0.00 0.00 4.34
638 645 4.876107 AGTATGCATCTGTTTTCGTTAGGG 59.124 41.667 0.19 0.00 0.00 3.53
639 646 6.422776 AAGTATGCATCTGTTTTCGTTAGG 57.577 37.500 0.19 0.00 0.00 2.69
640 647 6.961554 GGAAAGTATGCATCTGTTTTCGTTAG 59.038 38.462 0.19 0.00 0.00 2.34
641 648 6.653320 AGGAAAGTATGCATCTGTTTTCGTTA 59.347 34.615 0.19 0.00 0.00 3.18
642 649 5.473504 AGGAAAGTATGCATCTGTTTTCGTT 59.526 36.000 0.19 0.00 0.00 3.85
643 650 5.003804 AGGAAAGTATGCATCTGTTTTCGT 58.996 37.500 0.19 8.24 0.00 3.85
644 651 5.551760 AGGAAAGTATGCATCTGTTTTCG 57.448 39.130 0.19 0.00 0.00 3.46
645 652 7.147976 ACAAAGGAAAGTATGCATCTGTTTTC 58.852 34.615 0.19 9.21 0.00 2.29
646 653 7.054491 ACAAAGGAAAGTATGCATCTGTTTT 57.946 32.000 0.19 0.00 0.00 2.43
647 654 6.655078 ACAAAGGAAAGTATGCATCTGTTT 57.345 33.333 0.19 1.07 0.00 2.83
648 655 6.655078 AACAAAGGAAAGTATGCATCTGTT 57.345 33.333 0.19 0.00 0.00 3.16
649 656 6.265196 TGAAACAAAGGAAAGTATGCATCTGT 59.735 34.615 0.19 0.00 0.00 3.41
650 657 6.680810 TGAAACAAAGGAAAGTATGCATCTG 58.319 36.000 0.19 0.00 0.00 2.90
651 658 6.899393 TGAAACAAAGGAAAGTATGCATCT 57.101 33.333 0.19 0.00 0.00 2.90
652 659 7.945033 TTTGAAACAAAGGAAAGTATGCATC 57.055 32.000 0.19 0.00 0.00 3.91
653 660 8.729805 TTTTTGAAACAAAGGAAAGTATGCAT 57.270 26.923 3.79 3.79 0.00 3.96
680 687 7.121907 GGAGAGAAGGAAAGTATGCATCTTTTT 59.878 37.037 18.78 11.96 35.62 1.94
681 688 6.601217 GGAGAGAAGGAAAGTATGCATCTTTT 59.399 38.462 18.78 13.92 35.62 2.27
682 689 6.118852 GGAGAGAAGGAAAGTATGCATCTTT 58.881 40.000 18.18 18.18 37.75 2.52
683 690 5.397334 GGGAGAGAAGGAAAGTATGCATCTT 60.397 44.000 0.19 3.92 26.70 2.40
684 691 4.102367 GGGAGAGAAGGAAAGTATGCATCT 59.898 45.833 0.19 0.00 29.44 2.90
685 692 4.384940 GGGAGAGAAGGAAAGTATGCATC 58.615 47.826 0.19 0.00 0.00 3.91
686 693 3.137360 GGGGAGAGAAGGAAAGTATGCAT 59.863 47.826 3.79 3.79 0.00 3.96
687 694 2.505819 GGGGAGAGAAGGAAAGTATGCA 59.494 50.000 0.00 0.00 0.00 3.96
688 695 2.158740 GGGGGAGAGAAGGAAAGTATGC 60.159 54.545 0.00 0.00 0.00 3.14
689 696 3.847671 GGGGGAGAGAAGGAAAGTATG 57.152 52.381 0.00 0.00 0.00 2.39
706 713 3.576861 AGGAAAGTCTTCTTTTTGGGGG 58.423 45.455 0.00 0.00 42.99 5.40
707 714 5.614324 AAAGGAAAGTCTTCTTTTTGGGG 57.386 39.130 0.00 0.00 42.99 4.96
708 715 7.348080 AGTAAAGGAAAGTCTTCTTTTTGGG 57.652 36.000 4.99 0.00 42.99 4.12
709 716 9.338622 TCTAGTAAAGGAAAGTCTTCTTTTTGG 57.661 33.333 4.99 0.00 42.99 3.28
711 718 9.562408 CCTCTAGTAAAGGAAAGTCTTCTTTTT 57.438 33.333 4.99 0.82 42.99 1.94
712 719 7.662258 GCCTCTAGTAAAGGAAAGTCTTCTTTT 59.338 37.037 0.00 1.40 42.99 2.27
713 720 7.162761 GCCTCTAGTAAAGGAAAGTCTTCTTT 58.837 38.462 0.00 5.04 45.24 2.52
714 721 6.270231 TGCCTCTAGTAAAGGAAAGTCTTCTT 59.730 38.462 0.00 0.00 35.83 2.52
715 722 5.780793 TGCCTCTAGTAAAGGAAAGTCTTCT 59.219 40.000 0.00 0.00 35.83 2.85
716 723 6.038997 TGCCTCTAGTAAAGGAAAGTCTTC 57.961 41.667 0.00 0.00 35.83 2.87
717 724 6.435292 TTGCCTCTAGTAAAGGAAAGTCTT 57.565 37.500 0.00 0.00 35.83 3.01
718 725 6.628644 ATTGCCTCTAGTAAAGGAAAGTCT 57.371 37.500 0.00 0.00 34.82 3.24
719 726 8.788325 TTTATTGCCTCTAGTAAAGGAAAGTC 57.212 34.615 0.00 0.00 34.82 3.01
746 753 9.859152 CTCTCTCCTGGAATTTCCTATTTATTT 57.141 33.333 16.25 0.00 37.46 1.40
747 754 9.230477 TCTCTCTCCTGGAATTTCCTATTTATT 57.770 33.333 16.25 0.00 37.46 1.40
748 755 8.805145 TCTCTCTCCTGGAATTTCCTATTTAT 57.195 34.615 16.25 0.00 37.46 1.40
749 756 8.624019 TTCTCTCTCCTGGAATTTCCTATTTA 57.376 34.615 16.25 0.00 37.46 1.40
750 757 7.516450 TTCTCTCTCCTGGAATTTCCTATTT 57.484 36.000 16.25 0.00 37.46 1.40
751 758 7.516450 TTTCTCTCTCCTGGAATTTCCTATT 57.484 36.000 16.25 0.00 37.46 1.73
752 759 7.516450 TTTTCTCTCTCCTGGAATTTCCTAT 57.484 36.000 16.25 0.00 37.46 2.57
753 760 6.952605 TTTTCTCTCTCCTGGAATTTCCTA 57.047 37.500 16.25 2.72 37.46 2.94
754 761 5.850046 TTTTCTCTCTCCTGGAATTTCCT 57.150 39.130 16.25 0.00 37.46 3.36
755 762 5.184096 GGTTTTTCTCTCTCCTGGAATTTCC 59.816 44.000 8.59 8.59 36.96 3.13
756 763 5.184096 GGGTTTTTCTCTCTCCTGGAATTTC 59.816 44.000 0.00 0.00 0.00 2.17
759 766 3.657727 TGGGTTTTTCTCTCTCCTGGAAT 59.342 43.478 0.00 0.00 0.00 3.01
766 773 5.133941 AGGTTTCTTGGGTTTTTCTCTCTC 58.866 41.667 0.00 0.00 0.00 3.20
781 788 1.671379 GCCGCCGAAGAGGTTTCTT 60.671 57.895 0.00 0.00 46.22 2.52
856 868 1.078848 CCACAGAAGCCCGAAGAGG 60.079 63.158 0.00 0.00 40.63 3.69
870 882 1.959226 GAAAACTCGGCTCGCCACA 60.959 57.895 8.87 0.00 35.37 4.17
872 884 2.358247 GGAAAACTCGGCTCGCCA 60.358 61.111 8.87 0.00 35.37 5.69
893 905 2.737830 GATGCCTACCTCGCCTCC 59.262 66.667 0.00 0.00 0.00 4.30
922 934 4.518970 TGGAACAAATGTAGAGGCAAGTTC 59.481 41.667 0.00 0.00 31.92 3.01
937 949 5.961959 CCAATGTGGGGAAGTTGGAACAAA 61.962 45.833 0.00 0.00 42.88 2.83
976 995 0.446616 GCGAGAAATCGAACCCAACC 59.553 55.000 1.17 0.00 34.64 3.77
1055 1074 1.870016 CGCGTCGAGAAGAAGGAGC 60.870 63.158 0.00 0.00 0.00 4.70
1086 1105 1.421485 GTCCAACGCAGCAAGATCG 59.579 57.895 0.00 0.00 0.00 3.69
1096 1115 2.737376 GGTCTGGTCGTCCAACGC 60.737 66.667 2.32 0.00 43.81 4.84
1097 1116 2.048503 GGGTCTGGTCGTCCAACG 60.049 66.667 2.32 0.00 43.81 4.10
1099 1118 0.761323 TTGAGGGTCTGGTCGTCCAA 60.761 55.000 2.32 0.00 43.81 3.53
1140 1159 1.826921 GTCGAGGTCCCTGGCGATA 60.827 63.158 1.13 0.00 35.08 2.92
1166 1185 0.460987 GTGGATCTTGGAGAGCACCG 60.461 60.000 0.00 0.00 30.96 4.94
1360 1379 2.240500 GCGTGGCCGTGATGATCTC 61.241 63.158 0.00 0.00 36.15 2.75
1418 1624 2.774951 CGCAGACCGTCGCTAAACG 61.775 63.158 11.68 0.00 45.62 3.60
1440 1646 0.371645 GCTTGAAGACTTCATCGCCG 59.628 55.000 18.38 6.65 39.84 6.46
1459 1665 0.679505 TCCACGGTCTTCTTGTCCTG 59.320 55.000 0.00 0.00 0.00 3.86
1593 1807 0.610232 ACCTGCAATGGTTCTCTGCC 60.610 55.000 0.00 0.00 36.89 4.85
1674 1888 1.468520 AGGATGAAATTGACCGTTGCG 59.531 47.619 0.00 0.00 0.00 4.85
1679 1893 5.163447 TGGACTAGTAGGATGAAATTGACCG 60.163 44.000 0.00 0.00 0.00 4.79
1779 1993 1.832883 TGACATTTGGTTCCCCATCG 58.167 50.000 0.00 0.00 41.49 3.84
1854 2068 2.954989 CTCTGGATCTGAATCGGTGAGA 59.045 50.000 0.00 0.00 32.24 3.27
1912 2126 3.119245 ACATTGTCAAATGGCATCTCTGC 60.119 43.478 0.00 0.00 46.34 4.26
2038 2261 1.693606 CTTTTGGGCACACAATCCCTT 59.306 47.619 0.00 0.00 43.04 3.95
2151 2374 4.143543 GGATGTAGTCAGTAGGAGGGTAC 58.856 52.174 0.00 0.00 0.00 3.34
2254 2477 9.829507 AGAAGATTATCCTCTAAAGTCAACATG 57.170 33.333 0.00 0.00 0.00 3.21
2396 4065 5.004345 CGTAACAAAACAGCAAAAACAGGAG 59.996 40.000 0.00 0.00 0.00 3.69
2461 4130 2.532843 ACCTGCCAAAATGCTCATCTT 58.467 42.857 0.00 0.00 0.00 2.40
2465 4134 3.557228 AAAAACCTGCCAAAATGCTCA 57.443 38.095 0.00 0.00 0.00 4.26
2497 4166 5.649831 AGATTTTGCAACCTGGAGAGAATAC 59.350 40.000 0.00 0.00 0.00 1.89
2581 4250 1.455408 GCGCTATTGCCACACAAAAAC 59.545 47.619 0.00 0.00 42.86 2.43
2709 4378 0.539518 TGCCTCACCTAAGCGCATTA 59.460 50.000 11.47 4.62 0.00 1.90
2710 4379 0.322456 TTGCCTCACCTAAGCGCATT 60.322 50.000 11.47 3.50 0.00 3.56
2715 4386 1.897560 AACACTTGCCTCACCTAAGC 58.102 50.000 0.00 0.00 0.00 3.09
2749 4420 3.564408 GCACTAGGCGTTAATTGTACG 57.436 47.619 9.71 9.71 41.71 3.67
2824 4527 6.002653 AGTTCCCTTACAGAAATATGGTCC 57.997 41.667 0.00 0.00 0.00 4.46
2868 4573 8.316640 ACTATCTTTCTTTCTTACTGCAACTG 57.683 34.615 0.00 0.00 0.00 3.16
3014 5103 4.507342 AGGTCCCTAGATCATGCCTTAAT 58.493 43.478 0.00 0.00 0.00 1.40
3077 5166 5.651530 CAGTCATCAACCTTACTACATCGT 58.348 41.667 0.00 0.00 0.00 3.73
3078 5167 4.504461 GCAGTCATCAACCTTACTACATCG 59.496 45.833 0.00 0.00 0.00 3.84
3156 5249 7.611079 GCCTACTAGGTGTATGCTACTACTAAT 59.389 40.741 3.95 0.00 38.94 1.73
3157 5250 6.939163 GCCTACTAGGTGTATGCTACTACTAA 59.061 42.308 3.95 0.00 38.94 2.24
3160 5253 4.458642 GGCCTACTAGGTGTATGCTACTAC 59.541 50.000 0.00 0.00 40.86 2.73
3165 5258 2.434702 GTTGGCCTACTAGGTGTATGCT 59.565 50.000 10.33 0.00 40.86 3.79
3167 5260 3.451178 AGTGTTGGCCTACTAGGTGTATG 59.549 47.826 18.31 0.00 37.80 2.39
3177 5270 1.900486 AGGTAGTGAGTGTTGGCCTAC 59.100 52.381 10.70 10.70 0.00 3.18
3182 5275 4.058817 GTTCTCAAGGTAGTGAGTGTTGG 58.941 47.826 2.38 0.00 44.56 3.77
3183 5276 4.693283 TGTTCTCAAGGTAGTGAGTGTTG 58.307 43.478 2.38 0.00 44.56 3.33



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.