>input_sequence_57581
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------ATGGCCGCAGCGGAGGAAACGG
CCGTGGGAACCGCTGCGGAGGGGAGCGACCTGCGCTCCTTCTTCTCGACGCGCGGCGTCGCCGCCGATCTTGCTGCGTTG
GACGACCAGACCCTCAAGGCGCTGGACGAGAAGTACATTATCGCCAGGGACCTCGACGCCGCCACGGTGCTCTCCAAGAT
CCACCACTTGGTGGGGCACAGCGAAGCCAGCATCGTCCCCTACGAAGGGCTGTCCTACCAGCTTCCGTGCCGTGACCCGG
GGCAGCACGAGTACGACCCCACACTCCGGCAGCTTTGCCTGCGCCGCGGCAAGGTCGAAACTTGCACGGTCGGCGACCCC
AGGACCTCGCGCAAGGCCGAGATC--------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------ATCACGGCCACGCTATCCTTGGTCAAGAA
GACCGTCCTGAGTGGCCATCGCTCGTTTAGCGACGGTCTGCGCTACGGCGATGAAGTCTTCAAGCAGGACAAGAAGACCG
TGGATGATGCCCTGCTGGACATCTGCTGCCTACTCGAGTGCC-------CAAGGGCATCTCTCAAAATGCTT-GAACTTG
GTCCGGGCACGGTCGTTGGGCCACTGATATTCACAATGGAAGATGGGGCAGAGAACCATTGCAGGTCATTCGGTCCGAGT
GGAGCCCGGGTACATGAGGGGATCTCTAATATTACTGTCGAACAAGGCGCAACGGTCAATTTCATCCTACTAGTCCAGAG
GGATGATGTTTTTTGGGATTTTGCTCGGTCGCAACTCCGCCACGAATTGAATTGTGTGGTCATGACAGGCGGCGATGGGG
AACCAAATGTCATGACACGGGCTTTCTTGCGCAAACTCAAGGATTGTCTGTCTGTCCCTGTGTATGCTCTCACCGATTCA
GATCCAGAGGGAATTTCGATCTTTTGTACCTACAAGTTTGGATCAGCAGAGATGCCATTTGACAATGTGGGTCTTACCAT
TCCTGATATCAAGTTGATTGCGTATATAGGTGATGATGCCCTTCATTTGAGTCACCTTCA---------ACCGCTGGCCA
AGCGCGACAGATCGATTCTTAAGGGATTGTGTGCCCAAAAGCATGTAATAGGTGATGAACAATTGAGGGAGAACATACAT
TTCATGATGAACAGGGGCTTAAAATGCAAAATCGAAGCTTTATATTATCTTCAGTACCCTCCTACTGACTACATCCGCAA
AGCAGTAGGCAATCTGGAGGACATCTAA----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>chr3D_1_TraesCS3D01G170600
ATGCACTATAGCCCGTACCAACGCACGGGCATTCTACTAGTATTGTGTAAGAGATAACTCGACCGATTCTTAGTCATTAA
TTGTTGCACGCGAAACTAATAAAATGAAAACGACTATGGAC---TACCCTTTGATAGTAGAGATAATAGCCCTCAA--AG
TGCGGGTGGGCCAACCTATCCCGCGCTTCCAACATTTTCGGTCAAATGGCGGGACATTCAGCCTTCTATACGTTTTATAT
AGTATTGGTTTTCATCTAGTTTCTTTATTTCCAGAAATGTTCATAAAATTCGAAAAATGTTCTCAAGATTTTAAAAACAA
TCATGTAATTTTATTTTTTACATAGGTTTATGATTTTTGTTTTTTTGTGTGTTTTAAAAATGTCTGCAATTTTTAAAAAT
ATTCATAAATTTAGGGAAATTACCATGAATTTTAAA-TTATTCATAAAATAAAGAATGCATACAGGATTTTCTTAAAAAA
ATATTATAAAGAAAACATAATAATAATATCCACGCCTGTATGAAAATCGAGATAGAAAAACCGGCAGAACGAAAACAAGG
GGAAACATGTGGTGAAAAAACGGTATGCCCACGTCTAGGAGTTGGGCTGGCCCATGTCGCCCCGTGGGGTGCGTAAATTT
GGAACCCTAACGAAAACAGATGCATACTTTCCTTTGTTTCAAAAAAAAAAAGATGCATACTTTCCTTCTCTCCCCCCAAA
AAGAAGACTTTCCTTTACTAGAGGCAATAAATAAATAAATAGGAAATTCCAGGAGAGAGAAAAACCCAAGAAACCTCTTC
GGC-----GGCGAGGCGAGGCGGGGGTTCGGCAGCGGCGTCTCGTGGACTCCTAGCCAGCCCCTTCACCTCTTCGGGCTT
CTGTGGCGAGCCGAGTTTTCCGGCGGAGGCGAGGTAGGCATCCTGCTCCATCTGAACTTGCCTCTACATTTGTTCCAACT
TCCCCACATTGGAA-------CACTGAACAATTGGGTTGGGTTCGATTTCTCGCAGCCATGGCCGCAGCGGAGGAAACGG
CCGTGGGAACCGCTGCGGAGGGGAGCGACCTGCGCTCCTTCTTCTCGACGCGCGGCGTCGCCGCCGATCTTGCTGCGTTG
GACGACCAGACCCTCAAGGCGCTGGACGAGAAGTACATTATCGCCAGGGACCTCGACGCCGCCACGGTGCTCTCCAAGAT
CCACCACTTGGTGGGGCACAGCGAAGCCAGCATCGTCCCCTACGAAGGGCTGTCCTACCAGCTTCCGTGCCGTGACCCGG
GGCAGCACGAGTACGACCCCACACTCCGGCAGCTTTGCCTGCGCCGCGGCAAGGTCGAAACTTGCACGGTCGGCGACCCC
AGGACCTCGCGCAAGGCCGAGATC--------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------ATCACGGCCACGCTATCCTTGGTCAAGAA
GACCGTCCTGAGTGGCCATCGCTCGTTTAGCGACGGTCTGCGCTACGGCGATGAAGTCTTCAAGCAGGACAAGAAGACCG
TGGATGATGCCCTGCTGGACATCTGCTGCCTACTCGAGTGCC-------CAAGGGCATCTCTCAAAATGCTT-GAACTTG
GTCCGGGCACGGTCGTTGGGCCACTGATATTCACAATGGAAGATGGGGCAGAGAACCATTGCAGGTCATTCGGTCCGAGT
GGAGCCCGGGTACATGAGGGGATCTCTAATATTACTGTCGAACAAGGCGCAACGGTCAATTTCATCCTACTAGTCCAGAG
GGATGATGTTTTTTGGGATTTTGCTCGGTCGCAACTCCGCCACGAATTGAATTGTGTGGTCATGACAGGCGGCGATGGGG
AACCAAATGTCATGACACGGGCTTTCTTGCGCAAACTCAAGGATTGTCTGTCTGTCCCTGTGTATGCTCTCACCGATTCA
GATCCAGAGGGAATTTCGATCTTTTGTACCTACAAGTTTGGATCAGCAGAGATGCCATTTGACAATGTGGGTCTTACCAT
TCCTGATATCAAGTTGATTGCGTATATAGGTGATGATGCCCTTCATTTGAGTCACCTTCA---------ACCGCTGGCCA
AGCGCGACAGATCGATTCTTAAGGGATTGTGTGCCCAAAAGCATGTAATAGGTGATGAACAATTGAGGGAGAACATACAT
TTCATGATGAACAGGGGCTTAAAATGCAAAATCGAAGCTTTATATTATCTTCAGTACCCTCCTACTGACTACATCCGCAA
AGCAGTAGGCAATCTGGAGGACATCTAAGTAGCTCGTTGTGTTTAACTTTGGTAGAGAGACATCTATGTAGTTTGCCATG
TTGACTTTAGAGGATAATCTTCTAAGTTAGTTCATGTTGGGTGTGCAAA-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------CTATGGTTACTACTAGATTGTGCAT
GCACTTATGTTGTCACAATCTAGGTTATTAATGCTCCAGATTCTATATGACATTAAGCAGCTTGCTCCTGTTTTTGCTGT
TTTGTTACGAGGAAGCCTTTATATTTTGGCTCACCTGAAATCAGATTGTAAGATGAGCATTTTGGCAGGTTTTTTCAGAG
GTGAGGTATTCTCTCCAGGTTGCAAAATCTTCGATTAGAACCATCATTCCTGGCACCAACGGTGCTAAGGATGTCCCCAT
ACCATATTAGTTTTTGTGTGGCAATAGCGCTGGTAGTAGTATTGATCAATTGTGAATACAAAAAAGTGTGCCTAGGCGCT
AGGCGGCAACAAAACGCCTACCGCTTAATCATGCCAGGTCTGCGCTTAAGTGTGCCTTA--ATGCGCTTAGGTGAGGCAA
GTGTTAGGCGGTGTCAAAACGTACAATTAACGCCTAGTGCTTTCTTTATCCTTTCAATTCAGACAATATTTCCTTTTAA-
-------------------------------CCTCCATGTTTCTTCGGACCATATTTCTGT--AAGGGAACTTTGAATTT
GTGTAGCAAATCCAGTTGCAGTAAGAAAGAAAGATAGTTGAGATTCTTCTCGGCAATGAAAGGCCTCAGTTTGAGTTTGG
GCAACAATATTCTTGG----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
TAATCAGAATATCAGATATAGCTGCACCTGCAAGTAGCATGTATTGTTATTTATCTCCCACTATTAAGGCATGATCTAGG
GACCTTTAACAGTTGATCACTGAAGTAGTCAAGCATCTTTTTACTAC----GATGTAGTAAGGTTGATGACTGCCCAACC
TTTTTATCTTGCAATGGTTTTGGAAAATTATTTAATGTGTATTCAAATATTAGTAGTAGCATACACCTAGTAGGCCAACA
CTCACTACCTTGAGAACA
>chr3A_41
----------------------------------------TATTGGGTAAGAGATAACTCGACCGATTTTTAGTCATTAA
TGGTTGGACGTGAAACTAACAAAATGAAAATGACTATGGACTAGTACCCTTTGATAGCAGAGATAATAGCCCTCAGAGAG
TGTGGGTGGGCCAACCTATCTCGCGCTTTCAACATTTTCGGTCAAATGGCGGGACATTCAGCCTTCTATACGTCTTATGT
AGTATTGGTTTTCGTCTAGTTTCTTTGTTTCCAGAAATGTTCATAAAATTC-AAAAATGTTCTCAAGATTTTAAAAACAA
TGATGTAATTTTATTTTTTACATATGTTTACGATTTTTT--------TGTGTTTTAAAAATGTCTGCAAAATTTAAAAAC
ATTCATAAG-TTACGGAAATTACCATGAATTTTAAAATTATTCAAAAAATAAAAAATGCATACACAATTTCCTT-AAAAA
AGATTATAGGGAAAACATAATAATAACATCCACACACGTATGAAAGTCAAGAAAGAAAAATCGGCTGAACAAAAACAAAG
CAAAACACGCGGTGAAAAAATGGTATGCCAATGTCTAGGAGTTGTGCTGGCCCATGTCGCCCCGTGGAGTGTGTAAATTT
G-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>chr3A_751
AAAAGAA-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------AAGTTCCAGAAGAGAGAACAACCCTAGAAACCTCTTC
GACGGCGTGGCGAGGCGAGGCGGGGGTTCGGCAGCGGCGTCTCGTGGACTCCTAGCCAGCCCCTTCATCTCTTCGGGCTT
CGGCGGCGAGGCGAGTTTTCCGGCAGAGGCGAGGTAGGCATCCTGCTCCATCTAAACTTGCCTCTACA-TTGTTCCAACT
TCCCCACATTGGAATTTGGAACACTGAACAATTGTGTTGGGTTCGATTTCTCGCAGCCATGGCCGCAGCGGAGGAAACAG
CCGTGGGAACCGCTGCGGAGGGGAGCGACCTGCACTCCTTCTTCTCCAAAAGCAGCGTCGCCGCTGATCTTGCTATGGTG
GACGACCAGACCCTCAAGGCGCTGGACGAGAAGTACATCATCGCCAGGGACCTCGACGCCGCCATGGTGCTCTCCAAGAT
CCGCCACTTGGTGGGGCACAGCGAAGCCAGCATCGTCCCCTACGAAGGGCTGTCCTACCAGATTC---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>chr3A_1245
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------TTCCGTGTCACGACCCGG
GGCAGCACGAGTATGACCCCACACTCCGGCAGCTTTGCCTGCGCCGCGGCAAGGTCGAAACTTGCACGGTCGGCGACCCC
AGGACCTCGCGCAAGGCCAAGATCGTCACGGCCAGTGGTGAATCTACGGAGTAAATGTAGGGTAGGCTCAACTGTAATTA
TGCCATTGACATGGGCTGGGAAACAATAGTTTTGCTACGCTGGGGTCTAATCTTTGGTACTAAAAAAGAAATTACTCTTG
TTGGAGGGCAGGCTTAAGCCTGTTAAAGCATGCCTAGTAGATTCGCCCCTGATCACGGCCACGCTATCCTTGGTCAAGAA
GACCGTCCTGAGTGGCCATCGCTTGTTTAGCGACGGTCTACGCTAGGGCGATGAAGTCTTCAAGTAGGACAAGAAGACCG
TGGATGATGCCCTGCTGGACATCTGCTGCCTACTCGAGTGCC-------CAAGGGCATCTCTCAAAATGCTT-GAACTTG
GTCCGGGGACGGTCGTTGGGCCGCTGATATTCACAATGGAAGATGGCGCAGAGAACCATTGCAGGTCATTCGGTCCGAGT
GGAGCCCGGGTAGATGACGGGATCTCTAATATTACTGTCGAACAAGGTGCAATGGTCAATTTCATCCTACTAGTCCAGAG
GGATGATGTTTTTTGGGATTTTGCTCGGTCGCAACTCCGCCACGAATTGAATTGTGTGGTCATGACAGGCGGTGATGAGG
AACCAAATGTCATGACACGGGCTTTCTTGCACAGACTCAAGGATTGTCTGTCTGTCCCTGTGTATGCGCTCACCGATTCA
GATCCAGAGGGAATTTCGATCTTTTGTACCTACAAGTTTGGATCAACGGAGATGCCATTTGACAATGTGGGTCTTACCAT
TCCTGATATCAAGTTGATTGCGTATATAGGTGATGATGCCCTTCATTTGAGTCACCTTCA---------ATTGCTGGCCA
AGCACGACAGATCGATTCTTGAGGGATTGTGTGCCCAAAAGCATGTAATAGGTGATGAACAATTGAGGGAGAACATACAT
TTAATGATGAATAGGGGCTTGAAATGCAAAATCGAAGCTTTATATTATCTTCAATAGCCTCCTAATGACTACATCCGCAA
AGCAGTAGGCAAGCTGGAGGACATCTAAGTAGCTCGTTGTGTTTAACTTTGGTAGAGAGACATCTATGTAGTTTGCTATA
TTGACTTTAGAGGATAATCTTCTAAGTTAGTTCATGTTGGGTGTGCAAA-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------CTATGGTTACTACTAGATTGTGCAT
GCACTTATGTTGTCACAATCTAGGTTATTAATGCTCCAGATTCTATATGACATTAAGCAGCTTGTTCCTGTTTTCGCTGT
TTTGTTACAAGGAAGGCTTTATATTTTGGCTCAACTGAAATCAGATT--------------TTGGTAGCTTTTTTCAAAG
GTGAGTTATTCTCTCCAGGTTGCAAAATCTTCGATTAGAACCATCATTCCTGGAACCAACGGTGCTACGGATGTCCCCAT
ACCATATTACTTTTTGTGTGGCAATAGCGCTGGTAGTAGTATTGATCAATTGTGAATACAAAAAAGTGTGCCTATGCGCT
AGGCGGCAACAAAACGCCTACCGCTTAATCATGCCAGGTCTGCGCTTAAGTGTGCCTAGGCATGCACTTAGGTGAGGCAA
GTGTTAGGCGGTGTCAAAATGTACAATTAACGCCTAGTGCTTTCTTTATCCTTTCAATTCAGACAATATTTCCTTCTAA-
-------------------------------CCTCCATGTTTCTTCAGACCATATTTCTGT--AAGGAAACTTTGAATTT
GTGTAGCAAATCTAGTTGCAGTAAGAAATAAAGATAGTTGAGATTCTTCTGGGCAATGAAAGGCCTCAGTTTGAGTTTGG
GCAACAATAGTCTTGG----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
TAATCAGAATACCAGATATAGCTGCACCTGCAAGTAGCATGTATTGTTATTTATCTCCCACTGTTAAGGCATGATCTAGG
GACCTTTAACAGTTGATCACTGAAGTAGTCAAGCATCTTTTTACTTTATATGATGTAGCAAGGTTGATGACTGCCCAACC
TTTTTATCTTGCAATGGTTTTGGAAAATTATTTAATGTGTAT--------------------------------------
------------------
>chr3D_1445
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------GATGGACTCTTCAAGGGGCAGAAGAAGACCG
TGGATGATGCCCTGCTGGACATATGCTGCCTATTCGAGTGCGGAGTGCACAAGGACATCTCATTGTTCTTGAAGAACTGT
CTGTTAGCATGGTCATTGCGGCACTAAAATTCACAAGGGAAGATGGCGTAGAGATCCATTGCAGTTATATGGGA------
GGAACACGGATACCCGAGGGCATCTATAAGATTACTGTCACATCAGGTGCATTAGTCAATTTCATCCTCATAGTCCAGAG
GGATGATGTTTTTGAGGATTTTGCTGCGTAGCAATTCCACCATGAATTTGATTGTGTGGTCATTACAGGAGGTGATGGGC
AGCCAGATATTAGGACACGGGCTTTCTTGCGCAAACTCAAGGATTGTTTGCGTGTCCCTATGTATGCACTCGTTGATCCG
AATCCGAAGGGGCTTTTGATCTTTTGTACCTTTAAGTTTGGATCAACATATATGCCATTTGACAATGTGGGTCTTCCTGT
TCCTGACATCAAGTTGATTACAGTGTATTTAGGTGATGTCCTTGATTTGAATGACAAGTCACGCCTTACACCGCTGACCC
GAAACTACAGATTGATTCTGGAGGGACCATATGTCAAGTACTATGTAATCAGTGATGAACAGTTGAGGGAGAACATAAAT
TTCATGGTGTACAGGGGGTTGAAAAGCAATATGGGAGCTTTATACCATCGCCAATACCCTCCTACTGACTACATCCACAA
AACAATAAGCAATCAGAAGGACATCTAAGTAGCTCACTGTGTTTACATTGGT---AGAGACATCTATATAGTTTGATATG
GTGACTCTAGAGGATAGGCACTTAAGTTAGTTCATGTTGGGTGTGCAATCAACCCCCTTGCACGGAGCTTTAGATTGGGG
GAGAACCCTGAATCTAGTTTTCACAAAAATAAAAAGGATTGGTGGGTTCCTGGCGGTGTCGGCATGGTTGTTGGGACCCT
GGCCGCGGGTGAAGCTGGTGGAGGAGATCCAGATTGGGGGAATCCCCTTGGTTGGCCCTGGCCGGCCACCCCGAAGATGA
TGCTCAAGAGCGCCGCTTTTCTTCTTGGAGATGTCGGTCTATGTCTGCTCCTTCATTTCCACCCTCACTGCCTCTTGGGT
GAAAACCCTAACTCCGGTGGGCGGCGGCGGCGTCCTTGATGCCGTGACCTTCCTGAAGGTGTCGCCTTGAGGGCTGAGTG
GTGGTGCGCACTATGTGGGTCCTTGACAGTTGCTAGTGATGGACACTGCTTCGGGGGAAACCCTAGGATCTAGTTTTTCA
GATCGGACGATGGCGGTATTGCGGTGCCGTTTCTCTCCTGGGAGCATTGTTTATGGAGCAGCACTGGAAAACACGGGCAG
GAGGTGGAGCGGCTCCGTCTTGCACGGAGCTTCGGTGGAGCTGTCAAGTCATGCCTGGCCGACAGGTGCTACGCTGAGTC
ATGCCTGGTTGGCAGGTGCTATGCACGACAGATCTTCCAGAGTCTTCGTGTCTGGACGGACAAGTGCGGGGCGGTGACGC
CGTTGGGCGCCGTGGTGGCGTCGACGGATGTCCGGACTGGTAACGATGATGCGGATCTCTCTCCTGAAGATAGGCCAGTG
GTCCGATGAAGATGGCGGCTTCTAAAATGTGTGCATGTGGTGTGCGTTCTAGGTCTGCTGCACCGGCTGTTAGTCCCGAT
ACGTTATGTGGATGGATCGGCGATGACACTGATTTTAGATATGGGGAGTGAGAGCACTCGTCATTATTGAATTTGTAGGT
GTGAGTGGTGGCTTCGGGTGATTTGATGTATGTTCTTGTCAGACCTTTGTGGAATGATTAATAAAGATGGCTGCATGCAT
CGATTGATGCAGAGGCCGGAGGTTTAACCTCATTTTCAAAAAAAATGTTGGGTGTGCAATCTATCGTTACTACTAGACTA
TGGACGAATAGCTAGTGAAGAAAATCATGAGGTGAGACTGATTACCATAGATGTTTCCAGACACGAATTCATATACTGCA
GTGCACTCATAATTTGCAGAGATGATGACCTCTTCAAGGGGCCAAAGAAGACCGTGGATGATGCCCTGCTGGACATATGC
TGCATGTTCGAGTGCCTGAGGACATCTCTCAGTGTGCTTGAAGAACTGTCCGTGAGCATGGTCATTGGGCCACTAATATT
CACGAGGGAAGATGGCGTAGAGACCCATTGCAGTTGTATGGGAGGAACCCGGATACCATAGGGCATCATCTATGTAGTTT
GCTATGTTCACTCTGGAGGATAAGCACTTAAAGTTAGTTCATGTGGGTGTGCAATCTATGGTTACTACTAGATTGTGGAT
GACTCTTACGACACTGTAGGAC----------------------ATATGACATTAACCATCTTATTCCTATTTCTGCTCT
TTTGTTATGAGGAAGCCATTATATTTTT-CTCTCCTGAAATCAGCTTGTGAGAGGTTTGTGGTGAAAATTTCAGAGCTCT
TCAGG---------------TGCAAAATTTTCTATTAGAAATATCGTCCCTGGCACCACCGGCGTTGCGGACGTCAGGCA
TTAGGAAAAACCATTGCAGTTATCAAATCTAATGAAAGGAACTCACATTTCTTACCTGAAGTAGTGGTAGTGTTGA----
--------------------------------------------------------------------------------
-----------------------------------------------------TCAATTCAGGCAATATTTCTTTTTCTG
GAGCGACTATTTGTTGAGAATAATGAACTGGCCTCCATGTACCTTCAAACCATATTTCTCTCCAACAAAACTTTAGAATT
GTGGT--AAATCTAGTTGCAGTAAGAAAGAAAGATAGTTGATATTCTTCAGGGTAACAAAATGCATGAGTTTGAGTTTGC
GCAACAATAGTTCAAGGGTGTGTCTAGAACTCGATCAACTAAGACTTAACGAAGTCTCGGTCGAGTGACATCAGCGTAGT
TATTTTTCTACGAGCGGCACAGCTAGATGCTATAGAAGGCGACAAAACATGTTGCGGCAGTACGACAACAAATGCTACAA
CCATTCTAACTAAAATGCTACAACTGTCAATGAAGGATGTTGCCATCAACGAAATCACGTGCTACAACCAATGAGGGACA
ACATGCTACAACCGATGAGGGACAACATGCTACAACCAGCAAGATGGGTGTTGTAACCAGTAGGAAAAAATGTTGCAAAT
GATGGGATAGAATGTTACAAGGCCGACTCAGACTTGGTTAAATCTTAGTCGGCTGAGTTTTAGCAAGCCCGATAGTTCAA
TAATCATAATATCAGATATAGCTGAACTCACAAGTGTTCC-------------------------AAGACATGATCTAGG
GACCTTTAACAGTTGATCACTGAAGCAGTCAAGCATCCTTTTAATTTACATTATGTGGTAACATTGATGATAGCCAACC-
-TTGTGTCTTGCAATGGTTTTGACACATCATATAATTTGGCTTGAAA---TACTAGTGGAATACACCTAATAGGATAACA
CT----------------
>SNPs
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S----------------------S-----------
-S----S---S--------S----------S--------------------------S-----------------S----
--S-----------------S-------S--------------------------------------------S----S-
-------------S------------S------------------------S----------------------------
-S----------------------S-----S-------SSSSSSSSS----------------------SS--------S
--------SS---S------------------------------S--------S----------SS----S---S-----
-S------SS----------------S------S-SS--------S--S---S-------S----S----S-------S-
SS-----S-S----------S--------S-S------------S----------------------S---S--------
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S------S--------S-----S------------
-S-----------------------------------------------------------------S------------
-S-S------S-------------S----------------------------S--------------S-----------
----------------------------------S-------------------------------------------S-
---------------------------------S------------S-SSS--S----------S---------SS-S--
--------------------------------------S-------------------------S---------------
--S----------------------------------------------------------S-------S-SS-------
-------------S------------------------------------------------------------------
------------------S-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------S---------------S-----S------------------S---------------
--------------------------------------------------------------------------------
----------------------------------------------S---------------------------------
-----------------------------------------------S----S---------------------------
------------------------------------------------------------------------S-------
-------------------------------------------------------------------S------------
---------------------------------------------S----------------------------------
--------------------------------------------------------------------------------
---S----------------S-----------------------------------------------------------
--------------------S--------------------------------S--------------------------
----------------------------------------------------------------------------S---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------S---------------
-------------------------------------------------S---S-SSSS-S----S--S--------S--
-----S-------------------------------------------------------------S------------
---------S----------------------------------------------------------------------
---------------------------------------------------------SS------S--------------
-------------------S------------------------------------------------------------
----------------------------------------------S--------------------S------------
------------S-------------------------------------S-----------------------------
---------S----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------S-----------------
---------------------------------------------SS---------------------------------
-------------------------------------------S---SSS--S----S-S---------S----SS----
--SSSSSSSSSSSSSSSS
>forward_561
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------CGGCAGAACGAAAACAAGG
G-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>reverse_1646
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------CGGCGATGAAGTCTTCAAGC---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>forward_642
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------CGTGGGGTGCGTAAATTT
GG------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>reverse_1807
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------GGCAGAGAACCATTGCAGGT--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>forward_1665
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------CGGCGATGAAGTCTTCAAGC---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>reverse_4379
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------AATGCGCTTAGGTGAGGCAA--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
