Multiple sequence alignment - TraesCS3D01G169000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G169000 chr3D 100.000 5162 0 0 1 5162 144302457 144297296 0.000000e+00 9533.0
1 TraesCS3D01G169000 chr3D 89.425 870 60 6 1160 2021 192173792 192172947 0.000000e+00 1068.0
2 TraesCS3D01G169000 chr3D 89.846 650 61 3 3330 3978 192148919 192148274 0.000000e+00 830.0
3 TraesCS3D01G169000 chr3D 87.904 711 47 18 3978 4666 192059817 192059124 0.000000e+00 800.0
4 TraesCS3D01G169000 chr3D 93.795 419 24 2 2067 2485 192172957 192172541 3.390000e-176 628.0
5 TraesCS3D01G169000 chr3D 90.606 330 14 2 2508 2837 192172548 192172236 6.180000e-114 422.0
6 TraesCS3D01G169000 chr3D 94.359 195 11 0 2832 3026 192153260 192153066 3.020000e-77 300.0
7 TraesCS3D01G169000 chr3D 100.000 36 0 0 339 374 70271902 70271867 3.340000e-07 67.6
8 TraesCS3D01G169000 chr3A 98.920 3334 32 4 1 3330 163934092 163930759 0.000000e+00 5954.0
9 TraesCS3D01G169000 chr3A 94.797 1307 28 11 3311 4608 163930558 163929283 0.000000e+00 2001.0
10 TraesCS3D01G169000 chr3A 88.511 853 65 6 1167 2010 262223899 262224727 0.000000e+00 1002.0
11 TraesCS3D01G169000 chr3A 88.162 718 43 19 3982 4673 262521844 262522545 0.000000e+00 817.0
12 TraesCS3D01G169000 chr3A 92.100 519 37 3 2508 3026 262225138 262225652 0.000000e+00 728.0
13 TraesCS3D01G169000 chr3A 93.365 422 26 2 2065 2485 262224725 262225145 1.580000e-174 623.0
14 TraesCS3D01G169000 chr3A 74.581 358 57 21 4701 5046 641812432 641812767 5.430000e-25 126.0
15 TraesCS3D01G169000 chr3A 87.500 96 12 0 280 375 81701952 81701857 1.520000e-20 111.0
16 TraesCS3D01G169000 chr3B 98.051 3027 57 2 1 3026 207458864 207455839 0.000000e+00 5262.0
17 TraesCS3D01G169000 chr3B 93.938 1600 49 15 3025 4584 207453469 207451878 0.000000e+00 2374.0
18 TraesCS3D01G169000 chr3B 87.959 872 68 9 1162 2021 275656714 275657560 0.000000e+00 994.0
19 TraesCS3D01G169000 chr3B 90.569 615 52 4 3332 3945 275712118 275712727 0.000000e+00 809.0
20 TraesCS3D01G169000 chr3B 94.027 519 30 1 2508 3026 275657958 275658475 0.000000e+00 785.0
21 TraesCS3D01G169000 chr3B 93.795 419 23 2 2067 2485 275657550 275657965 1.220000e-175 627.0
22 TraesCS3D01G169000 chr3B 83.741 695 49 28 3978 4657 275911929 275912574 2.660000e-167 599.0
23 TraesCS3D01G169000 chr3B 90.909 176 10 3 3025 3199 396729811 396729641 1.120000e-56 231.0
24 TraesCS3D01G169000 chrUn 94.501 491 14 2 4672 5162 21628386 21627909 0.000000e+00 745.0
25 TraesCS3D01G169000 chrUn 90.395 177 15 2 3025 3200 83300028 83299853 1.120000e-56 231.0
26 TraesCS3D01G169000 chr7D 93.902 492 15 4 4671 5162 110133403 110132927 0.000000e+00 728.0
27 TraesCS3D01G169000 chr7D 90.123 162 15 1 4667 4827 426444275 426444436 5.240000e-50 209.0
28 TraesCS3D01G169000 chr7D 91.946 149 12 0 4679 4827 491877180 491877032 5.240000e-50 209.0
29 TraesCS3D01G169000 chr6B 81.454 399 51 10 1 398 126791188 126790812 6.490000e-79 305.0
30 TraesCS3D01G169000 chr6B 77.073 410 43 26 1 392 8394159 8393783 6.820000e-44 189.0
31 TraesCS3D01G169000 chr4D 92.778 180 12 1 3025 3203 69178213 69178034 5.130000e-65 259.0
32 TraesCS3D01G169000 chr4D 82.143 308 37 5 91 398 475310754 475310465 1.110000e-61 248.0
33 TraesCS3D01G169000 chr4D 75.309 324 54 20 4716 5027 417397487 417397796 1.170000e-26 132.0
34 TraesCS3D01G169000 chr2D 91.620 179 14 1 3024 3201 142434192 142434370 3.990000e-61 246.0
35 TraesCS3D01G169000 chr2D 86.667 165 18 4 4666 4827 617128913 617128750 4.110000e-41 180.0
36 TraesCS3D01G169000 chr7A 91.477 176 14 1 3025 3199 575454227 575454052 1.860000e-59 241.0
37 TraesCS3D01G169000 chr7A 75.424 354 59 20 4707 5052 177004313 177003980 4.170000e-31 147.0
38 TraesCS3D01G169000 chr5D 89.674 184 17 2 3025 3206 60522582 60522765 3.110000e-57 233.0
39 TraesCS3D01G169000 chr5D 78.512 363 47 25 4680 5033 462798007 462798347 5.240000e-50 209.0
40 TraesCS3D01G169000 chr4B 81.169 308 41 4 91 398 600159861 600159571 1.120000e-56 231.0
41 TraesCS3D01G169000 chr4A 90.395 177 16 1 3025 3200 671640862 671640686 1.120000e-56 231.0
42 TraesCS3D01G169000 chr4A 81.439 264 32 7 135 398 682064776 682064530 3.150000e-47 200.0
43 TraesCS3D01G169000 chr1D 89.809 157 15 1 4672 4827 474452707 474452551 3.150000e-47 200.0
44 TraesCS3D01G169000 chr1D 89.241 158 15 2 4672 4827 469881628 469881471 4.080000e-46 196.0
45 TraesCS3D01G169000 chr6D 86.957 161 17 3 4668 4827 418223434 418223277 1.480000e-40 178.0
46 TraesCS3D01G169000 chr6A 74.221 353 67 17 4701 5046 614987419 614987754 5.430000e-25 126.0
47 TraesCS3D01G169000 chr1B 79.882 169 24 7 4852 5018 10383000 10383160 1.170000e-21 115.0
48 TraesCS3D01G169000 chr2B 78.488 172 26 8 4852 5019 116352420 116352584 9.140000e-18 102.0
49 TraesCS3D01G169000 chr2B 82.075 106 17 2 4852 4956 51935917 51935813 7.120000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G169000 chr3D 144297296 144302457 5161 True 9533.000000 9533 100.000000 1 5162 1 chr3D.!!$R2 5161
1 TraesCS3D01G169000 chr3D 192148274 192148919 645 True 830.000000 830 89.846000 3330 3978 1 chr3D.!!$R4 648
2 TraesCS3D01G169000 chr3D 192059124 192059817 693 True 800.000000 800 87.904000 3978 4666 1 chr3D.!!$R3 688
3 TraesCS3D01G169000 chr3D 192172236 192173792 1556 True 706.000000 1068 91.275333 1160 2837 3 chr3D.!!$R6 1677
4 TraesCS3D01G169000 chr3A 163929283 163934092 4809 True 3977.500000 5954 96.858500 1 4608 2 chr3A.!!$R2 4607
5 TraesCS3D01G169000 chr3A 262521844 262522545 701 False 817.000000 817 88.162000 3982 4673 1 chr3A.!!$F1 691
6 TraesCS3D01G169000 chr3A 262223899 262225652 1753 False 784.333333 1002 91.325333 1167 3026 3 chr3A.!!$F3 1859
7 TraesCS3D01G169000 chr3B 207451878 207458864 6986 True 3818.000000 5262 95.994500 1 4584 2 chr3B.!!$R2 4583
8 TraesCS3D01G169000 chr3B 275712118 275712727 609 False 809.000000 809 90.569000 3332 3945 1 chr3B.!!$F1 613
9 TraesCS3D01G169000 chr3B 275656714 275658475 1761 False 802.000000 994 91.927000 1162 3026 3 chr3B.!!$F3 1864
10 TraesCS3D01G169000 chr3B 275911929 275912574 645 False 599.000000 599 83.741000 3978 4657 1 chr3B.!!$F2 679

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
115 116 0.179067 TTTGGGAAACGTCGAGCTGT 60.179 50.000 0.00 0.0 0.00 4.40 F
468 470 7.458409 AACAACTTGATTGCAGTGATAGATT 57.542 32.000 0.00 0.0 42.62 2.40 F
1460 1462 4.261614 GGGAACTTTTCGTCAAGCTTCAAT 60.262 41.667 0.00 0.0 0.00 2.57 F
1629 1631 2.159282 AGTTTATCGTGGCGAGATCGTT 60.159 45.455 3.94 0.0 39.91 3.85 F
3416 6033 2.230266 TGTGCACGCTTGTCTGTCTATA 59.770 45.455 13.13 0.0 0.00 1.31 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1460 1462 0.923358 AGGGGCGGTTATTCCATGAA 59.077 50.000 0.0 0.0 35.57 2.57 R
1629 1631 1.073763 ACAGCAACAGGAGTGCCATTA 59.926 47.619 0.0 0.0 36.29 1.90 R
3416 6033 1.067295 TGCCCTCTTCAGACCACAAT 58.933 50.000 0.0 0.0 0.00 2.71 R
3542 6159 0.698238 TGACCCCCTGATTTCACTGG 59.302 55.000 0.0 0.0 0.00 4.00 R
4766 7451 0.032615 AGGTCTTCCAGGAGCGAGAT 60.033 55.000 0.0 0.0 38.56 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
115 116 0.179067 TTTGGGAAACGTCGAGCTGT 60.179 50.000 0.00 0.00 0.00 4.40
468 470 7.458409 AACAACTTGATTGCAGTGATAGATT 57.542 32.000 0.00 0.00 42.62 2.40
1460 1462 4.261614 GGGAACTTTTCGTCAAGCTTCAAT 60.262 41.667 0.00 0.00 0.00 2.57
1629 1631 2.159282 AGTTTATCGTGGCGAGATCGTT 60.159 45.455 3.94 0.00 39.91 3.85
3347 5957 8.829373 AATCCTCAGCCTTTGTAAATTTCTAT 57.171 30.769 0.00 0.00 0.00 1.98
3348 5958 8.829373 ATCCTCAGCCTTTGTAAATTTCTATT 57.171 30.769 0.00 0.00 0.00 1.73
3378 5995 2.252260 GCACACTCGCATGCGTTT 59.748 55.556 36.50 22.98 40.74 3.60
3409 6026 2.537560 GCAGTGTGCACGCTTGTCT 61.538 57.895 29.69 6.73 44.26 3.41
3416 6033 2.230266 TGTGCACGCTTGTCTGTCTATA 59.770 45.455 13.13 0.00 0.00 1.31
3447 6064 5.131642 TCTGAAGAGGGCATAACTTGATCAT 59.868 40.000 0.00 0.00 0.00 2.45
3542 6159 3.610242 CGTAGTGTCTTGCATTGTCTCTC 59.390 47.826 0.00 0.00 0.00 3.20
3802 6420 1.343789 CGGATGCTGGAGTCAGATGAT 59.656 52.381 0.00 0.00 43.49 2.45
3939 6558 1.814394 CATGTGAATGTGTGGTGGGAG 59.186 52.381 0.00 0.00 0.00 4.30
4260 6885 5.202640 GTGTATTTCGTGTTGTTTCTGGAC 58.797 41.667 0.00 0.00 0.00 4.02
4261 6886 4.876679 TGTATTTCGTGTTGTTTCTGGACA 59.123 37.500 0.00 0.00 0.00 4.02
4363 7002 0.249826 TGTTGACGATGTGCTGCTGA 60.250 50.000 0.00 0.00 0.00 4.26
4439 7087 9.436957 AAGAGAGTATCGTGTGTGAATTTAATT 57.563 29.630 0.00 0.00 42.67 1.40
4560 7227 2.048127 GTCGAGAGGCCACCACAC 60.048 66.667 5.01 0.00 0.00 3.82
4561 7228 3.311110 TCGAGAGGCCACCACACC 61.311 66.667 5.01 0.00 0.00 4.16
4657 7342 1.134098 CAAACCTCACCTCACCACACT 60.134 52.381 0.00 0.00 0.00 3.55
4658 7343 0.759346 AACCTCACCTCACCACACTC 59.241 55.000 0.00 0.00 0.00 3.51
4659 7344 0.398522 ACCTCACCTCACCACACTCA 60.399 55.000 0.00 0.00 0.00 3.41
4660 7345 0.034059 CCTCACCTCACCACACTCAC 59.966 60.000 0.00 0.00 0.00 3.51
4661 7346 0.034059 CTCACCTCACCACACTCACC 59.966 60.000 0.00 0.00 0.00 4.02
4662 7347 0.398522 TCACCTCACCACACTCACCT 60.399 55.000 0.00 0.00 0.00 4.00
4663 7348 0.034059 CACCTCACCACACTCACCTC 59.966 60.000 0.00 0.00 0.00 3.85
4664 7349 0.398522 ACCTCACCACACTCACCTCA 60.399 55.000 0.00 0.00 0.00 3.86
4665 7350 0.034059 CCTCACCACACTCACCTCAC 59.966 60.000 0.00 0.00 0.00 3.51
4666 7351 0.034059 CTCACCACACTCACCTCACC 59.966 60.000 0.00 0.00 0.00 4.02
4667 7352 0.689412 TCACCACACTCACCTCACCA 60.689 55.000 0.00 0.00 0.00 4.17
4668 7353 0.532862 CACCACACTCACCTCACCAC 60.533 60.000 0.00 0.00 0.00 4.16
4669 7354 0.980754 ACCACACTCACCTCACCACA 60.981 55.000 0.00 0.00 0.00 4.17
4670 7355 0.532862 CCACACTCACCTCACCACAC 60.533 60.000 0.00 0.00 0.00 3.82
4671 7356 0.177836 CACACTCACCTCACCACACA 59.822 55.000 0.00 0.00 0.00 3.72
4672 7357 1.131638 ACACTCACCTCACCACACAT 58.868 50.000 0.00 0.00 0.00 3.21
4673 7358 1.070758 ACACTCACCTCACCACACATC 59.929 52.381 0.00 0.00 0.00 3.06
4674 7359 0.687354 ACTCACCTCACCACACATCC 59.313 55.000 0.00 0.00 0.00 3.51
4675 7360 0.686789 CTCACCTCACCACACATCCA 59.313 55.000 0.00 0.00 0.00 3.41
4676 7361 0.686789 TCACCTCACCACACATCCAG 59.313 55.000 0.00 0.00 0.00 3.86
4677 7362 0.321919 CACCTCACCACACATCCAGG 60.322 60.000 0.00 0.00 0.00 4.45
4678 7363 0.473694 ACCTCACCACACATCCAGGA 60.474 55.000 0.00 0.00 0.00 3.86
4679 7364 0.692476 CCTCACCACACATCCAGGAA 59.308 55.000 0.00 0.00 0.00 3.36
4680 7365 1.283029 CCTCACCACACATCCAGGAAT 59.717 52.381 0.00 0.00 0.00 3.01
4681 7366 2.505407 CCTCACCACACATCCAGGAATA 59.495 50.000 0.00 0.00 0.00 1.75
4682 7367 3.054434 CCTCACCACACATCCAGGAATAA 60.054 47.826 0.00 0.00 0.00 1.40
4683 7368 4.194640 CTCACCACACATCCAGGAATAAG 58.805 47.826 0.00 0.00 0.00 1.73
4684 7369 3.587061 TCACCACACATCCAGGAATAAGT 59.413 43.478 0.00 0.00 0.00 2.24
4685 7370 4.780554 TCACCACACATCCAGGAATAAGTA 59.219 41.667 0.00 0.00 0.00 2.24
4686 7371 5.428457 TCACCACACATCCAGGAATAAGTAT 59.572 40.000 0.00 0.00 0.00 2.12
4687 7372 5.760253 CACCACACATCCAGGAATAAGTATC 59.240 44.000 0.00 0.00 0.00 2.24
4688 7373 5.667626 ACCACACATCCAGGAATAAGTATCT 59.332 40.000 0.00 0.00 0.00 1.98
4689 7374 6.844388 ACCACACATCCAGGAATAAGTATCTA 59.156 38.462 0.00 0.00 0.00 1.98
4690 7375 7.015682 ACCACACATCCAGGAATAAGTATCTAG 59.984 40.741 0.00 0.00 0.00 2.43
4691 7376 7.382110 CACACATCCAGGAATAAGTATCTAGG 58.618 42.308 0.00 0.00 0.00 3.02
4692 7377 6.498651 ACACATCCAGGAATAAGTATCTAGGG 59.501 42.308 0.00 0.00 0.00 3.53
4693 7378 6.726299 CACATCCAGGAATAAGTATCTAGGGA 59.274 42.308 0.00 0.00 0.00 4.20
4694 7379 6.957020 ACATCCAGGAATAAGTATCTAGGGAG 59.043 42.308 0.00 0.00 0.00 4.30
4695 7380 6.798544 TCCAGGAATAAGTATCTAGGGAGA 57.201 41.667 0.00 0.00 35.71 3.71
4696 7381 7.175635 TCCAGGAATAAGTATCTAGGGAGAA 57.824 40.000 0.00 0.00 34.61 2.87
4697 7382 7.011382 TCCAGGAATAAGTATCTAGGGAGAAC 58.989 42.308 0.00 0.00 34.61 3.01
4698 7383 6.782988 CCAGGAATAAGTATCTAGGGAGAACA 59.217 42.308 0.00 0.00 34.61 3.18
4699 7384 7.456269 CCAGGAATAAGTATCTAGGGAGAACAT 59.544 40.741 0.00 0.00 34.61 2.71
4700 7385 8.310382 CAGGAATAAGTATCTAGGGAGAACATG 58.690 40.741 0.00 0.00 34.61 3.21
4701 7386 8.235230 AGGAATAAGTATCTAGGGAGAACATGA 58.765 37.037 0.00 0.00 34.61 3.07
4702 7387 8.527810 GGAATAAGTATCTAGGGAGAACATGAG 58.472 40.741 0.00 0.00 34.61 2.90
4703 7388 5.799827 AAGTATCTAGGGAGAACATGAGC 57.200 43.478 0.00 0.00 34.61 4.26
4704 7389 3.823873 AGTATCTAGGGAGAACATGAGCG 59.176 47.826 0.00 0.00 34.61 5.03
4705 7390 2.145397 TCTAGGGAGAACATGAGCGT 57.855 50.000 0.00 0.00 0.00 5.07
4706 7391 2.457598 TCTAGGGAGAACATGAGCGTT 58.542 47.619 0.00 0.00 0.00 4.84
4707 7392 2.427453 TCTAGGGAGAACATGAGCGTTC 59.573 50.000 0.00 0.00 44.63 3.95
4719 7404 3.361794 TGAGCGTTCTCATATCTCAGC 57.638 47.619 0.00 0.00 43.95 4.26
4720 7405 2.287248 TGAGCGTTCTCATATCTCAGCG 60.287 50.000 0.00 0.00 43.95 5.18
4721 7406 1.950216 AGCGTTCTCATATCTCAGCGA 59.050 47.619 0.00 0.00 0.00 4.93
4722 7407 2.047769 GCGTTCTCATATCTCAGCGAC 58.952 52.381 0.00 0.00 0.00 5.19
4723 7408 2.287308 GCGTTCTCATATCTCAGCGACT 60.287 50.000 0.00 0.00 0.00 4.18
4724 7409 3.550561 CGTTCTCATATCTCAGCGACTC 58.449 50.000 0.00 0.00 0.00 3.36
4725 7410 3.249799 CGTTCTCATATCTCAGCGACTCT 59.750 47.826 0.00 0.00 0.00 3.24
4726 7411 4.610456 CGTTCTCATATCTCAGCGACTCTC 60.610 50.000 0.00 0.00 0.00 3.20
4727 7412 3.063485 TCTCATATCTCAGCGACTCTCG 58.937 50.000 0.00 0.00 43.89 4.04
4728 7413 2.147150 TCATATCTCAGCGACTCTCGG 58.853 52.381 0.00 0.00 40.84 4.63
4729 7414 0.878416 ATATCTCAGCGACTCTCGGC 59.122 55.000 0.00 0.00 40.84 5.54
4730 7415 1.167155 TATCTCAGCGACTCTCGGCC 61.167 60.000 0.00 0.00 40.84 6.13
4731 7416 4.544689 CTCAGCGACTCTCGGCCG 62.545 72.222 22.12 22.12 40.84 6.13
4733 7418 4.838486 CAGCGACTCTCGGCCGTC 62.838 72.222 27.15 14.54 40.84 4.79
4737 7422 3.210528 GACTCTCGGCCGTCGGAT 61.211 66.667 27.15 8.29 39.77 4.18
4738 7423 3.183776 GACTCTCGGCCGTCGGATC 62.184 68.421 27.15 13.72 39.77 3.36
4739 7424 4.315122 CTCTCGGCCGTCGGATCG 62.315 72.222 27.15 17.56 39.77 3.69
4741 7426 4.189188 CTCGGCCGTCGGATCGTT 62.189 66.667 27.15 0.00 39.77 3.85
4742 7427 3.695022 CTCGGCCGTCGGATCGTTT 62.695 63.158 27.15 0.00 39.77 3.60
4743 7428 2.812178 CGGCCGTCGGATCGTTTT 60.812 61.111 19.50 0.00 34.75 2.43
4744 7429 2.385091 CGGCCGTCGGATCGTTTTT 61.385 57.895 19.50 0.00 34.75 1.94
4762 7447 2.853731 TTTGATGCGTTTTTGACCGT 57.146 40.000 0.00 0.00 0.00 4.83
4763 7448 2.392933 TTGATGCGTTTTTGACCGTC 57.607 45.000 0.00 0.00 0.00 4.79
4764 7449 0.233590 TGATGCGTTTTTGACCGTCG 59.766 50.000 0.00 0.00 0.00 5.12
4765 7450 0.452122 GATGCGTTTTTGACCGTCGG 60.452 55.000 10.48 10.48 0.00 4.79
4766 7451 0.881159 ATGCGTTTTTGACCGTCGGA 60.881 50.000 20.51 0.00 0.00 4.55
4767 7452 0.881159 TGCGTTTTTGACCGTCGGAT 60.881 50.000 20.51 1.57 0.00 4.18
4768 7453 0.179233 GCGTTTTTGACCGTCGGATC 60.179 55.000 20.51 12.26 0.00 3.36
4769 7454 1.425412 CGTTTTTGACCGTCGGATCT 58.575 50.000 20.51 0.00 0.00 2.75
4770 7455 1.389106 CGTTTTTGACCGTCGGATCTC 59.611 52.381 20.51 5.79 0.00 2.75
4771 7456 1.389106 GTTTTTGACCGTCGGATCTCG 59.611 52.381 20.51 0.00 40.90 4.04
4772 7457 0.734942 TTTTGACCGTCGGATCTCGC 60.735 55.000 20.51 0.41 39.05 5.03
4773 7458 1.592400 TTTGACCGTCGGATCTCGCT 61.592 55.000 20.51 0.00 39.05 4.93
4774 7459 1.989966 TTGACCGTCGGATCTCGCTC 61.990 60.000 20.51 3.33 39.05 5.03
4775 7460 3.183776 GACCGTCGGATCTCGCTCC 62.184 68.421 20.51 0.00 39.05 4.70
4776 7461 2.902846 CCGTCGGATCTCGCTCCT 60.903 66.667 4.91 0.00 39.05 3.69
4777 7462 2.329690 CGTCGGATCTCGCTCCTG 59.670 66.667 0.00 0.00 39.05 3.86
4778 7463 2.725008 GTCGGATCTCGCTCCTGG 59.275 66.667 0.00 0.00 39.05 4.45
4779 7464 1.824329 GTCGGATCTCGCTCCTGGA 60.824 63.158 0.00 0.00 39.05 3.86
4780 7465 1.076995 TCGGATCTCGCTCCTGGAA 60.077 57.895 0.00 0.00 39.05 3.53
4781 7466 1.103987 TCGGATCTCGCTCCTGGAAG 61.104 60.000 0.00 0.00 39.05 3.46
4782 7467 1.103987 CGGATCTCGCTCCTGGAAGA 61.104 60.000 0.00 0.00 34.07 2.87
4783 7468 0.387565 GGATCTCGCTCCTGGAAGAC 59.612 60.000 0.00 0.00 34.07 3.01
4784 7469 0.387565 GATCTCGCTCCTGGAAGACC 59.612 60.000 0.00 0.00 34.07 3.85
4785 7470 0.032615 ATCTCGCTCCTGGAAGACCT 60.033 55.000 0.00 0.00 34.07 3.85
4786 7471 0.251832 TCTCGCTCCTGGAAGACCTT 60.252 55.000 0.00 0.00 34.07 3.50
4787 7472 0.108424 CTCGCTCCTGGAAGACCTTG 60.108 60.000 0.00 0.00 34.07 3.61
4788 7473 1.078848 CGCTCCTGGAAGACCTTGG 60.079 63.158 0.00 0.00 34.07 3.61
4789 7474 1.377856 GCTCCTGGAAGACCTTGGC 60.378 63.158 0.00 0.00 34.07 4.52
4790 7475 1.301293 CTCCTGGAAGACCTTGGCC 59.699 63.158 0.00 0.00 34.07 5.36
4791 7476 2.203549 CTCCTGGAAGACCTTGGCCC 62.204 65.000 0.00 0.00 34.07 5.80
4792 7477 2.234296 CCTGGAAGACCTTGGCCCT 61.234 63.158 0.00 0.00 34.07 5.19
4793 7478 1.770324 CTGGAAGACCTTGGCCCTT 59.230 57.895 0.00 0.00 34.07 3.95
4794 7479 0.610232 CTGGAAGACCTTGGCCCTTG 60.610 60.000 0.00 0.00 34.07 3.61
4795 7480 1.304464 GGAAGACCTTGGCCCTTGG 60.304 63.158 0.00 1.63 0.00 3.61
4796 7481 1.767692 GAAGACCTTGGCCCTTGGA 59.232 57.895 12.00 0.00 0.00 3.53
4797 7482 0.332972 GAAGACCTTGGCCCTTGGAT 59.667 55.000 12.00 0.00 0.00 3.41
4798 7483 0.332972 AAGACCTTGGCCCTTGGATC 59.667 55.000 12.00 6.53 0.00 3.36
4799 7484 0.846427 AGACCTTGGCCCTTGGATCA 60.846 55.000 12.00 0.00 0.00 2.92
4800 7485 0.039618 GACCTTGGCCCTTGGATCAA 59.960 55.000 12.00 0.00 0.00 2.57
4801 7486 0.486879 ACCTTGGCCCTTGGATCAAA 59.513 50.000 12.00 0.00 0.00 2.69
4802 7487 1.132881 ACCTTGGCCCTTGGATCAAAA 60.133 47.619 12.00 0.00 0.00 2.44
4803 7488 1.977129 CCTTGGCCCTTGGATCAAAAA 59.023 47.619 0.00 0.00 0.00 1.94
4845 7530 9.542462 TGAATAGTAATAAATAGTGTGCACTCC 57.458 33.333 19.41 8.70 42.54 3.85
4846 7531 9.542462 GAATAGTAATAAATAGTGTGCACTCCA 57.458 33.333 19.41 3.58 42.54 3.86
4847 7532 9.547753 AATAGTAATAAATAGTGTGCACTCCAG 57.452 33.333 19.41 0.00 42.54 3.86
4848 7533 5.817816 AGTAATAAATAGTGTGCACTCCAGC 59.182 40.000 19.41 3.31 42.54 4.85
4849 7534 2.566833 AAATAGTGTGCACTCCAGCA 57.433 45.000 19.41 0.65 42.54 4.41
4855 7540 2.115695 TGCACTCCAGCATTGCCA 59.884 55.556 4.70 0.00 40.11 4.92
4856 7541 2.270257 TGCACTCCAGCATTGCCAC 61.270 57.895 4.70 0.00 40.11 5.01
4857 7542 2.998279 GCACTCCAGCATTGCCACC 61.998 63.158 4.70 0.00 0.00 4.61
4858 7543 2.360350 ACTCCAGCATTGCCACCG 60.360 61.111 4.70 0.00 0.00 4.94
4859 7544 3.818787 CTCCAGCATTGCCACCGC 61.819 66.667 4.70 0.00 0.00 5.68
4862 7547 4.124351 CAGCATTGCCACCGCCTG 62.124 66.667 4.70 0.00 0.00 4.85
4863 7548 4.666253 AGCATTGCCACCGCCTGT 62.666 61.111 4.70 0.00 0.00 4.00
4864 7549 2.749839 GCATTGCCACCGCCTGTA 60.750 61.111 0.00 0.00 0.00 2.74
4865 7550 2.339556 GCATTGCCACCGCCTGTAA 61.340 57.895 0.00 0.00 0.00 2.41
4866 7551 1.872197 GCATTGCCACCGCCTGTAAA 61.872 55.000 0.00 0.00 0.00 2.01
4867 7552 0.600557 CATTGCCACCGCCTGTAAAA 59.399 50.000 0.00 0.00 0.00 1.52
4868 7553 1.204467 CATTGCCACCGCCTGTAAAAT 59.796 47.619 0.00 0.00 0.00 1.82
4869 7554 1.333177 TTGCCACCGCCTGTAAAATT 58.667 45.000 0.00 0.00 0.00 1.82
4870 7555 0.600557 TGCCACCGCCTGTAAAATTG 59.399 50.000 0.00 0.00 0.00 2.32
4871 7556 0.108851 GCCACCGCCTGTAAAATTGG 60.109 55.000 0.00 0.00 0.00 3.16
4872 7557 0.530288 CCACCGCCTGTAAAATTGGG 59.470 55.000 0.00 0.00 0.00 4.12
4873 7558 1.253100 CACCGCCTGTAAAATTGGGT 58.747 50.000 0.00 0.00 0.00 4.51
4874 7559 1.067915 CACCGCCTGTAAAATTGGGTG 60.068 52.381 0.00 0.00 37.69 4.61
4875 7560 0.530288 CCGCCTGTAAAATTGGGTGG 59.470 55.000 0.00 0.00 42.07 4.61
4876 7561 0.108851 CGCCTGTAAAATTGGGTGGC 60.109 55.000 0.00 0.00 35.94 5.01
4877 7562 0.249120 GCCTGTAAAATTGGGTGGCC 59.751 55.000 0.00 0.00 33.45 5.36
4878 7563 0.530288 CCTGTAAAATTGGGTGGCCG 59.470 55.000 0.00 0.00 0.00 6.13
4879 7564 0.108851 CTGTAAAATTGGGTGGCCGC 60.109 55.000 8.12 8.12 0.00 6.53
4880 7565 1.216977 GTAAAATTGGGTGGCCGCC 59.783 57.895 28.23 28.23 0.00 6.13
4881 7566 2.344203 TAAAATTGGGTGGCCGCCG 61.344 57.895 28.77 0.00 0.00 6.46
4882 7567 2.766306 TAAAATTGGGTGGCCGCCGA 62.766 55.000 28.77 23.36 0.00 5.54
4901 7586 2.632377 GAGGGCATTCTCGTCATTTCA 58.368 47.619 0.00 0.00 0.00 2.69
4902 7587 2.352960 GAGGGCATTCTCGTCATTTCAC 59.647 50.000 0.00 0.00 0.00 3.18
4903 7588 2.083774 GGGCATTCTCGTCATTTCACA 58.916 47.619 0.00 0.00 0.00 3.58
4904 7589 2.159517 GGGCATTCTCGTCATTTCACAC 60.160 50.000 0.00 0.00 0.00 3.82
4905 7590 2.474526 GGCATTCTCGTCATTTCACACG 60.475 50.000 0.00 0.00 37.36 4.49
4906 7591 2.411748 GCATTCTCGTCATTTCACACGA 59.588 45.455 0.00 0.00 42.61 4.35
4911 7596 2.606108 TCGTCATTTCACACGAGGATG 58.394 47.619 0.00 0.00 40.05 3.51
4912 7597 2.029380 TCGTCATTTCACACGAGGATGT 60.029 45.455 0.00 0.00 40.05 3.06
4913 7598 3.191791 TCGTCATTTCACACGAGGATGTA 59.808 43.478 0.00 0.00 40.05 2.29
4914 7599 4.112634 CGTCATTTCACACGAGGATGTAT 58.887 43.478 0.00 0.00 38.32 2.29
4915 7600 5.066764 TCGTCATTTCACACGAGGATGTATA 59.933 40.000 0.00 0.00 40.05 1.47
4916 7601 5.746721 CGTCATTTCACACGAGGATGTATAA 59.253 40.000 0.00 0.00 38.32 0.98
4917 7602 6.254804 CGTCATTTCACACGAGGATGTATAAA 59.745 38.462 0.00 0.00 38.32 1.40
4918 7603 7.201487 CGTCATTTCACACGAGGATGTATAAAA 60.201 37.037 0.00 0.00 38.32 1.52
4919 7604 7.903431 GTCATTTCACACGAGGATGTATAAAAC 59.097 37.037 0.00 0.00 0.00 2.43
4920 7605 6.397831 TTTCACACGAGGATGTATAAAACG 57.602 37.500 0.00 0.00 0.00 3.60
4921 7606 4.426416 TCACACGAGGATGTATAAAACGG 58.574 43.478 0.00 0.00 0.00 4.44
4922 7607 3.554324 CACACGAGGATGTATAAAACGGG 59.446 47.826 0.00 0.00 0.00 5.28
4923 7608 3.128349 CACGAGGATGTATAAAACGGGG 58.872 50.000 0.00 0.00 0.00 5.73
4924 7609 2.767960 ACGAGGATGTATAAAACGGGGT 59.232 45.455 0.00 0.00 0.00 4.95
4925 7610 3.128349 CGAGGATGTATAAAACGGGGTG 58.872 50.000 0.00 0.00 0.00 4.61
4926 7611 3.473625 GAGGATGTATAAAACGGGGTGG 58.526 50.000 0.00 0.00 0.00 4.61
4927 7612 1.951602 GGATGTATAAAACGGGGTGGC 59.048 52.381 0.00 0.00 0.00 5.01
4928 7613 2.422377 GGATGTATAAAACGGGGTGGCT 60.422 50.000 0.00 0.00 0.00 4.75
4929 7614 2.406596 TGTATAAAACGGGGTGGCTC 57.593 50.000 0.00 0.00 0.00 4.70
4930 7615 1.910671 TGTATAAAACGGGGTGGCTCT 59.089 47.619 0.00 0.00 0.00 4.09
4931 7616 2.306512 TGTATAAAACGGGGTGGCTCTT 59.693 45.455 0.00 0.00 0.00 2.85
4932 7617 1.834188 ATAAAACGGGGTGGCTCTTG 58.166 50.000 0.00 0.00 0.00 3.02
4933 7618 0.475044 TAAAACGGGGTGGCTCTTGT 59.525 50.000 0.00 0.00 0.00 3.16
4934 7619 1.106944 AAAACGGGGTGGCTCTTGTG 61.107 55.000 0.00 0.00 0.00 3.33
4935 7620 2.976494 AAACGGGGTGGCTCTTGTGG 62.976 60.000 0.00 0.00 0.00 4.17
4936 7621 3.953775 CGGGGTGGCTCTTGTGGT 61.954 66.667 0.00 0.00 0.00 4.16
4937 7622 2.282462 GGGGTGGCTCTTGTGGTG 60.282 66.667 0.00 0.00 0.00 4.17
4938 7623 2.829384 GGGGTGGCTCTTGTGGTGA 61.829 63.158 0.00 0.00 0.00 4.02
4939 7624 1.150536 GGGTGGCTCTTGTGGTGAA 59.849 57.895 0.00 0.00 0.00 3.18
4940 7625 0.467290 GGGTGGCTCTTGTGGTGAAA 60.467 55.000 0.00 0.00 0.00 2.69
4941 7626 0.668535 GGTGGCTCTTGTGGTGAAAC 59.331 55.000 0.00 0.00 0.00 2.78
4952 7637 4.180496 GTGAAACCCTAGCCGTCG 57.820 61.111 0.00 0.00 0.00 5.12
4953 7638 2.098831 GTGAAACCCTAGCCGTCGC 61.099 63.158 0.00 0.00 0.00 5.19
4955 7640 1.518792 GAAACCCTAGCCGTCGCTC 60.519 63.158 0.00 0.00 43.95 5.03
4956 7641 3.352338 AAACCCTAGCCGTCGCTCG 62.352 63.158 0.00 0.00 43.95 5.03
4990 7675 4.097361 GCCCACCTCCTCCCGTTC 62.097 72.222 0.00 0.00 0.00 3.95
4991 7676 3.400054 CCCACCTCCTCCCGTTCC 61.400 72.222 0.00 0.00 0.00 3.62
4992 7677 2.284699 CCACCTCCTCCCGTTCCT 60.285 66.667 0.00 0.00 0.00 3.36
4993 7678 2.359967 CCACCTCCTCCCGTTCCTC 61.360 68.421 0.00 0.00 0.00 3.71
4994 7679 2.039137 ACCTCCTCCCGTTCCTCC 59.961 66.667 0.00 0.00 0.00 4.30
4995 7680 2.764547 CCTCCTCCCGTTCCTCCC 60.765 72.222 0.00 0.00 0.00 4.30
4996 7681 2.038975 CTCCTCCCGTTCCTCCCA 59.961 66.667 0.00 0.00 0.00 4.37
4997 7682 2.284405 TCCTCCCGTTCCTCCCAC 60.284 66.667 0.00 0.00 0.00 4.61
4998 7683 3.400054 CCTCCCGTTCCTCCCACC 61.400 72.222 0.00 0.00 0.00 4.61
4999 7684 2.284699 CTCCCGTTCCTCCCACCT 60.285 66.667 0.00 0.00 0.00 4.00
5000 7685 2.284405 TCCCGTTCCTCCCACCTC 60.284 66.667 0.00 0.00 0.00 3.85
5001 7686 3.771160 CCCGTTCCTCCCACCTCG 61.771 72.222 0.00 0.00 0.00 4.63
5002 7687 4.452733 CCGTTCCTCCCACCTCGC 62.453 72.222 0.00 0.00 0.00 5.03
5003 7688 4.452733 CGTTCCTCCCACCTCGCC 62.453 72.222 0.00 0.00 0.00 5.54
5004 7689 3.003763 GTTCCTCCCACCTCGCCT 61.004 66.667 0.00 0.00 0.00 5.52
5005 7690 2.683933 TTCCTCCCACCTCGCCTC 60.684 66.667 0.00 0.00 0.00 4.70
5006 7691 3.239627 TTCCTCCCACCTCGCCTCT 62.240 63.158 0.00 0.00 0.00 3.69
5007 7692 3.151022 CCTCCCACCTCGCCTCTC 61.151 72.222 0.00 0.00 0.00 3.20
5008 7693 2.043450 CTCCCACCTCGCCTCTCT 60.043 66.667 0.00 0.00 0.00 3.10
5009 7694 2.043852 TCCCACCTCGCCTCTCTC 60.044 66.667 0.00 0.00 0.00 3.20
5010 7695 2.043450 CCCACCTCGCCTCTCTCT 60.043 66.667 0.00 0.00 0.00 3.10
5011 7696 1.684049 CCCACCTCGCCTCTCTCTT 60.684 63.158 0.00 0.00 0.00 2.85
5012 7697 1.671901 CCCACCTCGCCTCTCTCTTC 61.672 65.000 0.00 0.00 0.00 2.87
5013 7698 1.671901 CCACCTCGCCTCTCTCTTCC 61.672 65.000 0.00 0.00 0.00 3.46
5014 7699 0.682855 CACCTCGCCTCTCTCTTCCT 60.683 60.000 0.00 0.00 0.00 3.36
5015 7700 0.395173 ACCTCGCCTCTCTCTTCCTC 60.395 60.000 0.00 0.00 0.00 3.71
5016 7701 1.106944 CCTCGCCTCTCTCTTCCTCC 61.107 65.000 0.00 0.00 0.00 4.30
5017 7702 1.076632 TCGCCTCTCTCTTCCTCCC 60.077 63.158 0.00 0.00 0.00 4.30
5018 7703 2.485795 CGCCTCTCTCTTCCTCCCG 61.486 68.421 0.00 0.00 0.00 5.14
5019 7704 2.791868 GCCTCTCTCTTCCTCCCGC 61.792 68.421 0.00 0.00 0.00 6.13
5020 7705 2.131067 CCTCTCTCTTCCTCCCGCC 61.131 68.421 0.00 0.00 0.00 6.13
5021 7706 2.042843 TCTCTCTTCCTCCCGCCC 60.043 66.667 0.00 0.00 0.00 6.13
5022 7707 3.157949 CTCTCTTCCTCCCGCCCC 61.158 72.222 0.00 0.00 0.00 5.80
5023 7708 3.684628 TCTCTTCCTCCCGCCCCT 61.685 66.667 0.00 0.00 0.00 4.79
5024 7709 3.157949 CTCTTCCTCCCGCCCCTC 61.158 72.222 0.00 0.00 0.00 4.30
5025 7710 4.798682 TCTTCCTCCCGCCCCTCC 62.799 72.222 0.00 0.00 0.00 4.30
5047 7732 3.791586 GCCACCCTGCCTCCTCTC 61.792 72.222 0.00 0.00 0.00 3.20
5048 7733 3.086600 CCACCCTGCCTCCTCTCC 61.087 72.222 0.00 0.00 0.00 3.71
5049 7734 2.040278 CACCCTGCCTCCTCTCCT 59.960 66.667 0.00 0.00 0.00 3.69
5050 7735 2.063378 CACCCTGCCTCCTCTCCTC 61.063 68.421 0.00 0.00 0.00 3.71
5051 7736 2.445654 CCCTGCCTCCTCTCCTCC 60.446 72.222 0.00 0.00 0.00 4.30
5052 7737 2.445654 CCTGCCTCCTCTCCTCCC 60.446 72.222 0.00 0.00 0.00 4.30
5053 7738 2.837291 CTGCCTCCTCTCCTCCCG 60.837 72.222 0.00 0.00 0.00 5.14
5054 7739 3.670629 CTGCCTCCTCTCCTCCCGT 62.671 68.421 0.00 0.00 0.00 5.28
5055 7740 3.151022 GCCTCCTCTCCTCCCGTG 61.151 72.222 0.00 0.00 0.00 4.94
5056 7741 2.443016 CCTCCTCTCCTCCCGTGG 60.443 72.222 0.00 0.00 0.00 4.94
5057 7742 3.151022 CTCCTCTCCTCCCGTGGC 61.151 72.222 0.00 0.00 0.00 5.01
5058 7743 4.779733 TCCTCTCCTCCCGTGGCC 62.780 72.222 0.00 0.00 0.00 5.36
5060 7745 2.765807 CTCTCCTCCCGTGGCCAT 60.766 66.667 9.72 0.00 0.00 4.40
5061 7746 2.764128 TCTCCTCCCGTGGCCATC 60.764 66.667 9.72 1.29 0.00 3.51
5062 7747 4.227134 CTCCTCCCGTGGCCATCG 62.227 72.222 9.72 14.81 0.00 3.84
5063 7748 4.770362 TCCTCCCGTGGCCATCGA 62.770 66.667 23.58 12.76 0.00 3.59
5064 7749 4.530857 CCTCCCGTGGCCATCGAC 62.531 72.222 23.58 5.24 0.00 4.20
5065 7750 4.530857 CTCCCGTGGCCATCGACC 62.531 72.222 23.58 4.87 0.00 4.79
5072 7757 4.832608 GGCCATCGACCACCCGTC 62.833 72.222 0.00 0.00 38.21 4.79
5079 7764 4.496670 GACCACCCGTCGAGATTG 57.503 61.111 0.00 0.00 0.00 2.67
5080 7765 1.810030 GACCACCCGTCGAGATTGC 60.810 63.158 0.00 0.00 0.00 3.56
5081 7766 2.511600 CCACCCGTCGAGATTGCC 60.512 66.667 0.00 0.00 0.00 4.52
5082 7767 2.579201 CACCCGTCGAGATTGCCT 59.421 61.111 0.00 0.00 0.00 4.75
5083 7768 1.519455 CACCCGTCGAGATTGCCTC 60.519 63.158 0.00 0.00 38.55 4.70
5084 7769 1.682684 ACCCGTCGAGATTGCCTCT 60.683 57.895 0.00 0.00 39.78 3.69
5085 7770 1.066587 CCCGTCGAGATTGCCTCTC 59.933 63.158 0.00 3.82 45.98 3.20
5086 7771 1.066587 CCGTCGAGATTGCCTCTCC 59.933 63.158 7.58 0.00 46.63 3.71
5087 7772 1.298713 CGTCGAGATTGCCTCTCCG 60.299 63.158 7.58 3.67 46.63 4.63
5088 7773 1.590259 GTCGAGATTGCCTCTCCGC 60.590 63.158 7.58 0.00 46.63 5.54
5089 7774 2.279784 CGAGATTGCCTCTCCGCC 60.280 66.667 7.58 0.00 46.63 6.13
5090 7775 2.279784 GAGATTGCCTCTCCGCCG 60.280 66.667 2.68 0.00 44.06 6.46
5091 7776 3.798954 GAGATTGCCTCTCCGCCGG 62.799 68.421 0.00 0.00 44.06 6.13
5111 7796 2.123077 CTCCTCTCCCCTCGCCAT 60.123 66.667 0.00 0.00 0.00 4.40
5112 7797 2.123251 TCCTCTCCCCTCGCCATC 60.123 66.667 0.00 0.00 0.00 3.51
5113 7798 3.610669 CCTCTCCCCTCGCCATCG 61.611 72.222 0.00 0.00 0.00 3.84
5114 7799 4.292178 CTCTCCCCTCGCCATCGC 62.292 72.222 0.00 0.00 35.26 4.58
5143 7828 4.491409 GCCGGCTCCTTTCCCCTC 62.491 72.222 22.15 0.00 0.00 4.30
5144 7829 3.798511 CCGGCTCCTTTCCCCTCC 61.799 72.222 0.00 0.00 0.00 4.30
5145 7830 3.798511 CGGCTCCTTTCCCCTCCC 61.799 72.222 0.00 0.00 0.00 4.30
5146 7831 3.421386 GGCTCCTTTCCCCTCCCC 61.421 72.222 0.00 0.00 0.00 4.81
5147 7832 3.421386 GCTCCTTTCCCCTCCCCC 61.421 72.222 0.00 0.00 0.00 5.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 4.759693 TCAACGGCAGTTTCAGAATACAAT 59.240 37.500 0.00 0.00 38.79 2.71
319 321 4.870363 TGAATTTTAGAACTGCAAGGTGC 58.130 39.130 0.00 0.00 45.29 5.01
775 777 0.610687 AGGTGTTACTCTGAGGCTGC 59.389 55.000 9.85 0.00 0.00 5.25
1178 1180 4.584743 GGATTTGGGTGACTGGGATATTTC 59.415 45.833 0.00 0.00 0.00 2.17
1230 1232 2.352805 GGGACTTGCTCCACCCTG 59.647 66.667 0.00 0.00 41.63 4.45
1460 1462 0.923358 AGGGGCGGTTATTCCATGAA 59.077 50.000 0.00 0.00 35.57 2.57
1629 1631 1.073763 ACAGCAACAGGAGTGCCATTA 59.926 47.619 0.00 0.00 36.29 1.90
3409 6026 5.363868 CCCTCTTCAGACCACAATATAGACA 59.636 44.000 0.00 0.00 0.00 3.41
3416 6033 1.067295 TGCCCTCTTCAGACCACAAT 58.933 50.000 0.00 0.00 0.00 2.71
3542 6159 0.698238 TGACCCCCTGATTTCACTGG 59.302 55.000 0.00 0.00 0.00 4.00
3802 6420 2.754946 GTACCACACGAGGAATTGGA 57.245 50.000 0.00 0.00 33.02 3.53
4020 6643 2.836372 TCTTCTGTCCTGCTCACATCAT 59.164 45.455 0.00 0.00 0.00 2.45
4363 7002 5.413213 TGTACACAGCACTGTTAACAACTTT 59.587 36.000 10.03 0.00 42.83 2.66
4439 7087 2.698797 AGAAGAGGACGGACAACTTTCA 59.301 45.455 0.00 0.00 0.00 2.69
4657 7342 0.686789 CTGGATGTGTGGTGAGGTGA 59.313 55.000 0.00 0.00 0.00 4.02
4658 7343 0.321919 CCTGGATGTGTGGTGAGGTG 60.322 60.000 0.00 0.00 0.00 4.00
4659 7344 0.473694 TCCTGGATGTGTGGTGAGGT 60.474 55.000 0.00 0.00 0.00 3.85
4660 7345 0.692476 TTCCTGGATGTGTGGTGAGG 59.308 55.000 0.00 0.00 0.00 3.86
4661 7346 2.795231 ATTCCTGGATGTGTGGTGAG 57.205 50.000 0.00 0.00 0.00 3.51
4662 7347 3.587061 ACTTATTCCTGGATGTGTGGTGA 59.413 43.478 0.00 0.00 0.00 4.02
4663 7348 3.955471 ACTTATTCCTGGATGTGTGGTG 58.045 45.455 0.00 0.00 0.00 4.17
4664 7349 5.667626 AGATACTTATTCCTGGATGTGTGGT 59.332 40.000 0.00 0.00 0.00 4.16
4665 7350 6.179906 AGATACTTATTCCTGGATGTGTGG 57.820 41.667 0.00 0.00 0.00 4.17
4666 7351 7.382110 CCTAGATACTTATTCCTGGATGTGTG 58.618 42.308 0.00 0.00 0.00 3.82
4667 7352 6.498651 CCCTAGATACTTATTCCTGGATGTGT 59.501 42.308 0.00 0.00 0.00 3.72
4668 7353 6.726299 TCCCTAGATACTTATTCCTGGATGTG 59.274 42.308 0.00 0.00 0.00 3.21
4669 7354 6.875469 TCCCTAGATACTTATTCCTGGATGT 58.125 40.000 0.00 0.00 0.00 3.06
4670 7355 7.185565 TCTCCCTAGATACTTATTCCTGGATG 58.814 42.308 0.00 0.00 0.00 3.51
4671 7356 7.363759 TCTCCCTAGATACTTATTCCTGGAT 57.636 40.000 0.00 0.00 0.00 3.41
4672 7357 6.798544 TCTCCCTAGATACTTATTCCTGGA 57.201 41.667 0.00 0.00 0.00 3.86
4673 7358 6.782988 TGTTCTCCCTAGATACTTATTCCTGG 59.217 42.308 0.00 0.00 0.00 4.45
4674 7359 7.841282 TGTTCTCCCTAGATACTTATTCCTG 57.159 40.000 0.00 0.00 0.00 3.86
4675 7360 8.235230 TCATGTTCTCCCTAGATACTTATTCCT 58.765 37.037 0.00 0.00 0.00 3.36
4676 7361 8.423906 TCATGTTCTCCCTAGATACTTATTCC 57.576 38.462 0.00 0.00 0.00 3.01
4677 7362 8.032451 GCTCATGTTCTCCCTAGATACTTATTC 58.968 40.741 0.00 0.00 0.00 1.75
4678 7363 7.309499 CGCTCATGTTCTCCCTAGATACTTATT 60.309 40.741 0.00 0.00 0.00 1.40
4679 7364 6.151985 CGCTCATGTTCTCCCTAGATACTTAT 59.848 42.308 0.00 0.00 0.00 1.73
4680 7365 5.473846 CGCTCATGTTCTCCCTAGATACTTA 59.526 44.000 0.00 0.00 0.00 2.24
4681 7366 4.279671 CGCTCATGTTCTCCCTAGATACTT 59.720 45.833 0.00 0.00 0.00 2.24
4682 7367 3.823873 CGCTCATGTTCTCCCTAGATACT 59.176 47.826 0.00 0.00 0.00 2.12
4683 7368 3.570550 ACGCTCATGTTCTCCCTAGATAC 59.429 47.826 0.00 0.00 0.00 2.24
4684 7369 3.833732 ACGCTCATGTTCTCCCTAGATA 58.166 45.455 0.00 0.00 0.00 1.98
4685 7370 2.672098 ACGCTCATGTTCTCCCTAGAT 58.328 47.619 0.00 0.00 0.00 1.98
4686 7371 2.145397 ACGCTCATGTTCTCCCTAGA 57.855 50.000 0.00 0.00 0.00 2.43
4687 7372 2.815478 GAACGCTCATGTTCTCCCTAG 58.185 52.381 0.00 0.00 43.82 3.02
4688 7373 2.961526 GAACGCTCATGTTCTCCCTA 57.038 50.000 0.00 0.00 43.82 3.53
4689 7374 3.842869 GAACGCTCATGTTCTCCCT 57.157 52.632 0.00 0.00 43.82 4.20
4700 7385 2.031595 TCGCTGAGATATGAGAACGCTC 60.032 50.000 0.00 0.00 41.67 5.03
4701 7386 1.950216 TCGCTGAGATATGAGAACGCT 59.050 47.619 0.00 0.00 0.00 5.07
4702 7387 2.047769 GTCGCTGAGATATGAGAACGC 58.952 52.381 0.00 0.00 0.00 4.84
4703 7388 3.249799 AGAGTCGCTGAGATATGAGAACG 59.750 47.826 0.00 0.00 0.00 3.95
4704 7389 4.610456 CGAGAGTCGCTGAGATATGAGAAC 60.610 50.000 0.00 0.00 31.14 3.01
4705 7390 3.496507 CGAGAGTCGCTGAGATATGAGAA 59.503 47.826 0.00 0.00 31.14 2.87
4706 7391 3.063485 CGAGAGTCGCTGAGATATGAGA 58.937 50.000 0.00 0.00 31.14 3.27
4707 7392 2.159430 CCGAGAGTCGCTGAGATATGAG 59.841 54.545 0.00 0.00 38.82 2.90
4708 7393 2.147150 CCGAGAGTCGCTGAGATATGA 58.853 52.381 0.00 0.00 38.82 2.15
4709 7394 1.400888 GCCGAGAGTCGCTGAGATATG 60.401 57.143 0.00 0.00 38.82 1.78
4710 7395 0.878416 GCCGAGAGTCGCTGAGATAT 59.122 55.000 0.00 0.00 38.82 1.63
4711 7396 1.167155 GGCCGAGAGTCGCTGAGATA 61.167 60.000 0.00 0.00 38.82 1.98
4712 7397 2.485795 GGCCGAGAGTCGCTGAGAT 61.486 63.158 0.00 0.00 38.82 2.75
4713 7398 3.134792 GGCCGAGAGTCGCTGAGA 61.135 66.667 0.00 0.00 38.82 3.27
4714 7399 4.544689 CGGCCGAGAGTCGCTGAG 62.545 72.222 24.07 0.00 38.82 3.35
4716 7401 4.838486 GACGGCCGAGAGTCGCTG 62.838 72.222 35.90 0.00 38.82 5.18
4720 7405 3.183776 GATCCGACGGCCGAGAGTC 62.184 68.421 35.90 18.40 41.76 3.36
4721 7406 3.210528 GATCCGACGGCCGAGAGT 61.211 66.667 35.90 9.58 41.76 3.24
4722 7407 4.315122 CGATCCGACGGCCGAGAG 62.315 72.222 35.90 21.35 41.76 3.20
4724 7409 3.695022 AAACGATCCGACGGCCGAG 62.695 63.158 35.90 24.42 41.76 4.63
4725 7410 2.768503 AAAAACGATCCGACGGCCGA 62.769 55.000 35.90 10.13 41.76 5.54
4726 7411 2.385091 AAAAACGATCCGACGGCCG 61.385 57.895 26.86 26.86 37.61 6.13
4727 7412 3.569902 AAAAACGATCCGACGGCC 58.430 55.556 9.66 2.30 37.61 6.13
4741 7426 3.512680 ACGGTCAAAAACGCATCAAAAA 58.487 36.364 0.00 0.00 0.00 1.94
4742 7427 3.109619 GACGGTCAAAAACGCATCAAAA 58.890 40.909 2.62 0.00 0.00 2.44
4743 7428 2.722071 GACGGTCAAAAACGCATCAAA 58.278 42.857 2.62 0.00 0.00 2.69
4744 7429 1.333347 CGACGGTCAAAAACGCATCAA 60.333 47.619 9.10 0.00 0.00 2.57
4745 7430 0.233590 CGACGGTCAAAAACGCATCA 59.766 50.000 9.10 0.00 0.00 3.07
4746 7431 0.452122 CCGACGGTCAAAAACGCATC 60.452 55.000 5.48 0.00 0.00 3.91
4747 7432 0.881159 TCCGACGGTCAAAAACGCAT 60.881 50.000 14.79 0.00 0.00 4.73
4748 7433 0.881159 ATCCGACGGTCAAAAACGCA 60.881 50.000 14.79 0.00 0.00 5.24
4749 7434 0.179233 GATCCGACGGTCAAAAACGC 60.179 55.000 14.79 0.00 0.00 4.84
4750 7435 1.389106 GAGATCCGACGGTCAAAAACG 59.611 52.381 14.79 0.00 0.00 3.60
4751 7436 1.389106 CGAGATCCGACGGTCAAAAAC 59.611 52.381 14.79 0.00 41.76 2.43
4752 7437 1.705256 CGAGATCCGACGGTCAAAAA 58.295 50.000 14.79 0.00 41.76 1.94
4753 7438 0.734942 GCGAGATCCGACGGTCAAAA 60.735 55.000 14.79 0.00 41.76 2.44
4754 7439 1.153901 GCGAGATCCGACGGTCAAA 60.154 57.895 14.79 0.00 41.76 2.69
4755 7440 2.044555 AGCGAGATCCGACGGTCAA 61.045 57.895 14.79 0.00 41.76 3.18
4756 7441 2.437895 AGCGAGATCCGACGGTCA 60.438 61.111 14.79 0.00 41.76 4.02
4757 7442 2.328639 GAGCGAGATCCGACGGTC 59.671 66.667 14.79 16.39 46.27 4.79
4758 7443 3.210528 GGAGCGAGATCCGACGGT 61.211 66.667 14.79 8.10 41.76 4.83
4759 7444 2.902846 AGGAGCGAGATCCGACGG 60.903 66.667 7.84 7.84 44.65 4.79
4760 7445 2.329690 CAGGAGCGAGATCCGACG 59.670 66.667 7.64 4.34 44.65 5.12
4761 7446 1.384989 TTCCAGGAGCGAGATCCGAC 61.385 60.000 7.64 1.68 44.65 4.79
4762 7447 1.076995 TTCCAGGAGCGAGATCCGA 60.077 57.895 7.64 0.00 44.65 4.55
4763 7448 1.103987 TCTTCCAGGAGCGAGATCCG 61.104 60.000 1.40 0.00 44.65 4.18
4764 7449 0.387565 GTCTTCCAGGAGCGAGATCC 59.612 60.000 0.00 0.00 39.89 3.36
4765 7450 0.387565 GGTCTTCCAGGAGCGAGATC 59.612 60.000 0.00 0.00 0.00 2.75
4766 7451 0.032615 AGGTCTTCCAGGAGCGAGAT 60.033 55.000 0.00 0.00 38.56 2.75
4767 7452 0.251832 AAGGTCTTCCAGGAGCGAGA 60.252 55.000 0.00 0.00 38.56 4.04
4768 7453 0.108424 CAAGGTCTTCCAGGAGCGAG 60.108 60.000 0.00 0.00 38.56 5.03
4769 7454 1.544825 CCAAGGTCTTCCAGGAGCGA 61.545 60.000 0.00 0.00 38.56 4.93
4770 7455 1.078848 CCAAGGTCTTCCAGGAGCG 60.079 63.158 0.00 0.00 38.56 5.03
4771 7456 1.377856 GCCAAGGTCTTCCAGGAGC 60.378 63.158 0.00 0.00 34.46 4.70
4772 7457 1.301293 GGCCAAGGTCTTCCAGGAG 59.699 63.158 0.00 0.00 34.46 3.69
4773 7458 2.231380 GGGCCAAGGTCTTCCAGGA 61.231 63.158 4.39 0.00 34.46 3.86
4774 7459 1.793820 AAGGGCCAAGGTCTTCCAGG 61.794 60.000 6.18 0.00 35.89 4.45
4775 7460 0.610232 CAAGGGCCAAGGTCTTCCAG 60.610 60.000 6.18 0.00 35.89 3.86
4776 7461 1.460255 CAAGGGCCAAGGTCTTCCA 59.540 57.895 6.18 0.00 35.89 3.53
4777 7462 1.304464 CCAAGGGCCAAGGTCTTCC 60.304 63.158 6.18 0.00 0.00 3.46
4778 7463 0.332972 ATCCAAGGGCCAAGGTCTTC 59.667 55.000 6.18 0.00 0.00 2.87
4779 7464 0.332972 GATCCAAGGGCCAAGGTCTT 59.667 55.000 6.18 0.00 0.00 3.01
4780 7465 0.846427 TGATCCAAGGGCCAAGGTCT 60.846 55.000 6.18 0.00 0.00 3.85
4781 7466 0.039618 TTGATCCAAGGGCCAAGGTC 59.960 55.000 6.18 7.92 0.00 3.85
4782 7467 0.486879 TTTGATCCAAGGGCCAAGGT 59.513 50.000 6.18 0.00 0.00 3.50
4783 7468 1.643310 TTTTGATCCAAGGGCCAAGG 58.357 50.000 6.18 7.19 0.00 3.61
4819 7504 9.542462 GGAGTGCACACTATTTATTACTATTCA 57.458 33.333 21.04 0.00 42.66 2.57
4820 7505 9.542462 TGGAGTGCACACTATTTATTACTATTC 57.458 33.333 21.04 0.77 42.66 1.75
4821 7506 9.547753 CTGGAGTGCACACTATTTATTACTATT 57.452 33.333 21.04 0.00 42.66 1.73
4822 7507 7.657761 GCTGGAGTGCACACTATTTATTACTAT 59.342 37.037 21.04 0.00 42.66 2.12
4823 7508 6.984474 GCTGGAGTGCACACTATTTATTACTA 59.016 38.462 21.04 0.00 42.66 1.82
4824 7509 5.817816 GCTGGAGTGCACACTATTTATTACT 59.182 40.000 21.04 0.00 42.66 2.24
4825 7510 5.584649 TGCTGGAGTGCACACTATTTATTAC 59.415 40.000 21.04 0.00 42.66 1.89
4826 7511 5.739959 TGCTGGAGTGCACACTATTTATTA 58.260 37.500 21.04 0.00 42.66 0.98
4827 7512 4.588899 TGCTGGAGTGCACACTATTTATT 58.411 39.130 21.04 0.00 42.66 1.40
4828 7513 4.220693 TGCTGGAGTGCACACTATTTAT 57.779 40.909 21.04 0.00 42.66 1.40
4829 7514 3.694043 TGCTGGAGTGCACACTATTTA 57.306 42.857 21.04 0.00 42.66 1.40
4830 7515 2.566833 TGCTGGAGTGCACACTATTT 57.433 45.000 21.04 0.00 42.66 1.40
4831 7516 2.751259 CAATGCTGGAGTGCACACTATT 59.249 45.455 21.04 9.60 46.33 1.73
4832 7517 2.362736 CAATGCTGGAGTGCACACTAT 58.637 47.619 21.04 0.00 46.33 2.12
4833 7518 1.812235 CAATGCTGGAGTGCACACTA 58.188 50.000 21.04 10.17 46.33 2.74
4834 7519 1.521450 GCAATGCTGGAGTGCACACT 61.521 55.000 21.04 2.22 45.27 3.55
4835 7520 1.080974 GCAATGCTGGAGTGCACAC 60.081 57.895 21.04 13.37 45.27 3.82
4836 7521 3.357919 GCAATGCTGGAGTGCACA 58.642 55.556 21.04 0.00 45.27 4.57
4839 7524 2.570181 GTGGCAATGCTGGAGTGC 59.430 61.111 13.25 13.25 45.21 4.40
4840 7525 2.693762 CGGTGGCAATGCTGGAGTG 61.694 63.158 4.82 0.00 0.00 3.51
4841 7526 2.360350 CGGTGGCAATGCTGGAGT 60.360 61.111 4.82 0.00 0.00 3.85
4842 7527 3.818787 GCGGTGGCAATGCTGGAG 61.819 66.667 4.82 0.00 39.62 3.86
4845 7530 4.124351 CAGGCGGTGGCAATGCTG 62.124 66.667 4.82 5.15 42.47 4.41
4846 7531 2.762969 TTACAGGCGGTGGCAATGCT 62.763 55.000 4.82 0.00 42.47 3.79
4847 7532 1.872197 TTTACAGGCGGTGGCAATGC 61.872 55.000 0.00 0.00 42.47 3.56
4848 7533 0.600557 TTTTACAGGCGGTGGCAATG 59.399 50.000 0.00 0.00 42.47 2.82
4849 7534 1.555967 ATTTTACAGGCGGTGGCAAT 58.444 45.000 0.00 0.00 42.47 3.56
4850 7535 1.000283 CAATTTTACAGGCGGTGGCAA 60.000 47.619 0.00 0.00 42.47 4.52
4851 7536 0.600557 CAATTTTACAGGCGGTGGCA 59.399 50.000 0.00 0.00 42.47 4.92
4852 7537 0.108851 CCAATTTTACAGGCGGTGGC 60.109 55.000 0.00 0.00 38.90 5.01
4853 7538 0.530288 CCCAATTTTACAGGCGGTGG 59.470 55.000 0.00 0.00 0.00 4.61
4854 7539 1.067915 CACCCAATTTTACAGGCGGTG 60.068 52.381 0.00 0.00 33.91 4.94
4855 7540 1.253100 CACCCAATTTTACAGGCGGT 58.747 50.000 0.00 0.00 0.00 5.68
4856 7541 0.530288 CCACCCAATTTTACAGGCGG 59.470 55.000 0.00 0.00 0.00 6.13
4857 7542 0.108851 GCCACCCAATTTTACAGGCG 60.109 55.000 0.00 0.00 0.00 5.52
4858 7543 0.249120 GGCCACCCAATTTTACAGGC 59.751 55.000 0.00 0.00 39.86 4.85
4859 7544 0.530288 CGGCCACCCAATTTTACAGG 59.470 55.000 2.24 0.00 0.00 4.00
4860 7545 0.108851 GCGGCCACCCAATTTTACAG 60.109 55.000 2.24 0.00 0.00 2.74
4861 7546 1.536943 GGCGGCCACCCAATTTTACA 61.537 55.000 15.62 0.00 0.00 2.41
4862 7547 1.216977 GGCGGCCACCCAATTTTAC 59.783 57.895 15.62 0.00 0.00 2.01
4863 7548 2.344203 CGGCGGCCACCCAATTTTA 61.344 57.895 20.71 0.00 0.00 1.52
4864 7549 3.690280 CGGCGGCCACCCAATTTT 61.690 61.111 20.71 0.00 0.00 1.82
4865 7550 4.669809 TCGGCGGCCACCCAATTT 62.670 61.111 20.71 0.00 0.00 1.82
4881 7566 2.352960 GTGAAATGACGAGAATGCCCTC 59.647 50.000 0.00 0.00 0.00 4.30
4882 7567 2.290260 TGTGAAATGACGAGAATGCCCT 60.290 45.455 0.00 0.00 0.00 5.19
4883 7568 2.083774 TGTGAAATGACGAGAATGCCC 58.916 47.619 0.00 0.00 0.00 5.36
4884 7569 2.474526 CGTGTGAAATGACGAGAATGCC 60.475 50.000 0.00 0.00 37.81 4.40
4885 7570 2.411748 TCGTGTGAAATGACGAGAATGC 59.588 45.455 0.00 0.00 39.59 3.56
4891 7576 2.029380 ACATCCTCGTGTGAAATGACGA 60.029 45.455 0.00 0.00 42.10 4.20
4892 7577 2.337583 ACATCCTCGTGTGAAATGACG 58.662 47.619 0.00 0.00 36.91 4.35
4893 7578 7.534085 TTTATACATCCTCGTGTGAAATGAC 57.466 36.000 0.00 0.00 33.62 3.06
4894 7579 7.201487 CGTTTTATACATCCTCGTGTGAAATGA 60.201 37.037 0.00 0.00 33.62 2.57
4895 7580 6.899771 CGTTTTATACATCCTCGTGTGAAATG 59.100 38.462 0.00 0.00 33.62 2.32
4896 7581 6.036735 CCGTTTTATACATCCTCGTGTGAAAT 59.963 38.462 0.00 0.00 33.62 2.17
4897 7582 5.349270 CCGTTTTATACATCCTCGTGTGAAA 59.651 40.000 0.00 0.00 33.62 2.69
4898 7583 4.865925 CCGTTTTATACATCCTCGTGTGAA 59.134 41.667 0.00 0.00 33.62 3.18
4899 7584 4.426416 CCGTTTTATACATCCTCGTGTGA 58.574 43.478 0.00 0.00 33.62 3.58
4900 7585 3.554324 CCCGTTTTATACATCCTCGTGTG 59.446 47.826 0.00 0.00 33.62 3.82
4901 7586 3.431207 CCCCGTTTTATACATCCTCGTGT 60.431 47.826 0.00 0.00 36.13 4.49
4902 7587 3.128349 CCCCGTTTTATACATCCTCGTG 58.872 50.000 0.00 0.00 0.00 4.35
4903 7588 2.767960 ACCCCGTTTTATACATCCTCGT 59.232 45.455 0.00 0.00 0.00 4.18
4904 7589 3.128349 CACCCCGTTTTATACATCCTCG 58.872 50.000 0.00 0.00 0.00 4.63
4905 7590 3.473625 CCACCCCGTTTTATACATCCTC 58.526 50.000 0.00 0.00 0.00 3.71
4906 7591 2.422377 GCCACCCCGTTTTATACATCCT 60.422 50.000 0.00 0.00 0.00 3.24
4907 7592 1.951602 GCCACCCCGTTTTATACATCC 59.048 52.381 0.00 0.00 0.00 3.51
4908 7593 2.876550 GAGCCACCCCGTTTTATACATC 59.123 50.000 0.00 0.00 0.00 3.06
4909 7594 2.508300 AGAGCCACCCCGTTTTATACAT 59.492 45.455 0.00 0.00 0.00 2.29
4910 7595 1.910671 AGAGCCACCCCGTTTTATACA 59.089 47.619 0.00 0.00 0.00 2.29
4911 7596 2.681344 CAAGAGCCACCCCGTTTTATAC 59.319 50.000 0.00 0.00 0.00 1.47
4912 7597 2.306512 ACAAGAGCCACCCCGTTTTATA 59.693 45.455 0.00 0.00 0.00 0.98
4913 7598 1.074889 ACAAGAGCCACCCCGTTTTAT 59.925 47.619 0.00 0.00 0.00 1.40
4914 7599 0.475044 ACAAGAGCCACCCCGTTTTA 59.525 50.000 0.00 0.00 0.00 1.52
4915 7600 1.106944 CACAAGAGCCACCCCGTTTT 61.107 55.000 0.00 0.00 0.00 2.43
4916 7601 1.528309 CACAAGAGCCACCCCGTTT 60.528 57.895 0.00 0.00 0.00 3.60
4917 7602 2.113139 CACAAGAGCCACCCCGTT 59.887 61.111 0.00 0.00 0.00 4.44
4918 7603 3.953775 CCACAAGAGCCACCCCGT 61.954 66.667 0.00 0.00 0.00 5.28
4919 7604 3.953775 ACCACAAGAGCCACCCCG 61.954 66.667 0.00 0.00 0.00 5.73
4920 7605 2.282462 CACCACAAGAGCCACCCC 60.282 66.667 0.00 0.00 0.00 4.95
4921 7606 0.467290 TTTCACCACAAGAGCCACCC 60.467 55.000 0.00 0.00 0.00 4.61
4922 7607 0.668535 GTTTCACCACAAGAGCCACC 59.331 55.000 0.00 0.00 0.00 4.61
4923 7608 0.668535 GGTTTCACCACAAGAGCCAC 59.331 55.000 0.00 0.00 38.42 5.01
4924 7609 0.467290 GGGTTTCACCACAAGAGCCA 60.467 55.000 0.00 0.00 41.02 4.75
4925 7610 0.178990 AGGGTTTCACCACAAGAGCC 60.179 55.000 0.00 0.00 41.02 4.70
4926 7611 2.427506 CTAGGGTTTCACCACAAGAGC 58.572 52.381 0.00 0.00 41.02 4.09
4927 7612 2.427506 GCTAGGGTTTCACCACAAGAG 58.572 52.381 0.00 0.00 41.02 2.85
4928 7613 1.073284 GGCTAGGGTTTCACCACAAGA 59.927 52.381 0.00 0.00 41.02 3.02
4929 7614 1.534729 GGCTAGGGTTTCACCACAAG 58.465 55.000 0.00 0.00 41.02 3.16
4930 7615 0.250553 CGGCTAGGGTTTCACCACAA 60.251 55.000 0.00 0.00 41.02 3.33
4931 7616 1.373435 CGGCTAGGGTTTCACCACA 59.627 57.895 0.00 0.00 41.02 4.17
4932 7617 0.672711 GACGGCTAGGGTTTCACCAC 60.673 60.000 0.00 0.00 41.02 4.16
4933 7618 1.675219 GACGGCTAGGGTTTCACCA 59.325 57.895 0.00 0.00 41.02 4.17
4934 7619 1.447314 CGACGGCTAGGGTTTCACC 60.447 63.158 0.00 0.00 37.60 4.02
4935 7620 2.098831 GCGACGGCTAGGGTTTCAC 61.099 63.158 0.00 0.00 35.83 3.18
4936 7621 2.263540 GCGACGGCTAGGGTTTCA 59.736 61.111 0.00 0.00 35.83 2.69
4973 7658 4.097361 GAACGGGAGGAGGTGGGC 62.097 72.222 0.00 0.00 0.00 5.36
4974 7659 3.400054 GGAACGGGAGGAGGTGGG 61.400 72.222 0.00 0.00 0.00 4.61
4975 7660 2.284699 AGGAACGGGAGGAGGTGG 60.285 66.667 0.00 0.00 0.00 4.61
4976 7661 2.359967 GGAGGAACGGGAGGAGGTG 61.360 68.421 0.00 0.00 0.00 4.00
4977 7662 2.039137 GGAGGAACGGGAGGAGGT 59.961 66.667 0.00 0.00 0.00 3.85
4978 7663 2.764547 GGGAGGAACGGGAGGAGG 60.765 72.222 0.00 0.00 0.00 4.30
4979 7664 2.038975 TGGGAGGAACGGGAGGAG 59.961 66.667 0.00 0.00 0.00 3.69
4980 7665 2.284405 GTGGGAGGAACGGGAGGA 60.284 66.667 0.00 0.00 0.00 3.71
4981 7666 3.400054 GGTGGGAGGAACGGGAGG 61.400 72.222 0.00 0.00 0.00 4.30
4982 7667 2.284699 AGGTGGGAGGAACGGGAG 60.285 66.667 0.00 0.00 0.00 4.30
4983 7668 2.284405 GAGGTGGGAGGAACGGGA 60.284 66.667 0.00 0.00 0.00 5.14
4984 7669 3.771160 CGAGGTGGGAGGAACGGG 61.771 72.222 0.00 0.00 0.00 5.28
4985 7670 4.452733 GCGAGGTGGGAGGAACGG 62.453 72.222 0.00 0.00 0.00 4.44
4986 7671 4.452733 GGCGAGGTGGGAGGAACG 62.453 72.222 0.00 0.00 0.00 3.95
4987 7672 3.003763 AGGCGAGGTGGGAGGAAC 61.004 66.667 0.00 0.00 0.00 3.62
4988 7673 2.683933 GAGGCGAGGTGGGAGGAA 60.684 66.667 0.00 0.00 0.00 3.36
4989 7674 3.663815 GAGAGGCGAGGTGGGAGGA 62.664 68.421 0.00 0.00 0.00 3.71
4990 7675 3.151022 GAGAGGCGAGGTGGGAGG 61.151 72.222 0.00 0.00 0.00 4.30
4991 7676 2.043450 AGAGAGGCGAGGTGGGAG 60.043 66.667 0.00 0.00 0.00 4.30
4992 7677 2.043852 GAGAGAGGCGAGGTGGGA 60.044 66.667 0.00 0.00 0.00 4.37
4993 7678 1.671901 GAAGAGAGAGGCGAGGTGGG 61.672 65.000 0.00 0.00 0.00 4.61
4994 7679 1.671901 GGAAGAGAGAGGCGAGGTGG 61.672 65.000 0.00 0.00 0.00 4.61
4995 7680 0.682855 AGGAAGAGAGAGGCGAGGTG 60.683 60.000 0.00 0.00 0.00 4.00
4996 7681 0.395173 GAGGAAGAGAGAGGCGAGGT 60.395 60.000 0.00 0.00 0.00 3.85
4997 7682 1.106944 GGAGGAAGAGAGAGGCGAGG 61.107 65.000 0.00 0.00 0.00 4.63
4998 7683 1.106944 GGGAGGAAGAGAGAGGCGAG 61.107 65.000 0.00 0.00 0.00 5.03
4999 7684 1.076632 GGGAGGAAGAGAGAGGCGA 60.077 63.158 0.00 0.00 0.00 5.54
5000 7685 2.485795 CGGGAGGAAGAGAGAGGCG 61.486 68.421 0.00 0.00 0.00 5.52
5001 7686 2.791868 GCGGGAGGAAGAGAGAGGC 61.792 68.421 0.00 0.00 0.00 4.70
5002 7687 2.131067 GGCGGGAGGAAGAGAGAGG 61.131 68.421 0.00 0.00 0.00 3.69
5003 7688 2.131067 GGGCGGGAGGAAGAGAGAG 61.131 68.421 0.00 0.00 0.00 3.20
5004 7689 2.042843 GGGCGGGAGGAAGAGAGA 60.043 66.667 0.00 0.00 0.00 3.10
5005 7690 3.157949 GGGGCGGGAGGAAGAGAG 61.158 72.222 0.00 0.00 0.00 3.20
5006 7691 3.680920 GAGGGGCGGGAGGAAGAGA 62.681 68.421 0.00 0.00 0.00 3.10
5007 7692 3.157949 GAGGGGCGGGAGGAAGAG 61.158 72.222 0.00 0.00 0.00 2.85
5008 7693 4.798682 GGAGGGGCGGGAGGAAGA 62.799 72.222 0.00 0.00 0.00 2.87
5030 7715 3.791586 GAGAGGAGGCAGGGTGGC 61.792 72.222 0.00 0.00 44.10 5.01
5031 7716 3.086600 GGAGAGGAGGCAGGGTGG 61.087 72.222 0.00 0.00 0.00 4.61
5032 7717 2.040278 AGGAGAGGAGGCAGGGTG 59.960 66.667 0.00 0.00 0.00 4.61
5033 7718 2.366570 GAGGAGAGGAGGCAGGGT 59.633 66.667 0.00 0.00 0.00 4.34
5034 7719 2.445654 GGAGGAGAGGAGGCAGGG 60.446 72.222 0.00 0.00 0.00 4.45
5035 7720 2.445654 GGGAGGAGAGGAGGCAGG 60.446 72.222 0.00 0.00 0.00 4.85
5036 7721 2.837291 CGGGAGGAGAGGAGGCAG 60.837 72.222 0.00 0.00 0.00 4.85
5037 7722 3.673597 ACGGGAGGAGAGGAGGCA 61.674 66.667 0.00 0.00 0.00 4.75
5038 7723 3.151022 CACGGGAGGAGAGGAGGC 61.151 72.222 0.00 0.00 0.00 4.70
5039 7724 2.443016 CCACGGGAGGAGAGGAGG 60.443 72.222 0.00 0.00 0.00 4.30
5040 7725 3.151022 GCCACGGGAGGAGAGGAG 61.151 72.222 0.00 0.00 0.00 3.69
5041 7726 4.779733 GGCCACGGGAGGAGAGGA 62.780 72.222 0.00 0.00 0.00 3.71
5043 7728 2.765807 ATGGCCACGGGAGGAGAG 60.766 66.667 8.16 0.00 0.00 3.20
5044 7729 2.764128 GATGGCCACGGGAGGAGA 60.764 66.667 8.16 0.00 0.00 3.71
5045 7730 4.227134 CGATGGCCACGGGAGGAG 62.227 72.222 8.16 0.00 0.00 3.69
5046 7731 4.770362 TCGATGGCCACGGGAGGA 62.770 66.667 21.98 6.52 0.00 3.71
5047 7732 4.530857 GTCGATGGCCACGGGAGG 62.531 72.222 21.98 4.48 0.00 4.30
5048 7733 4.530857 GGTCGATGGCCACGGGAG 62.531 72.222 21.98 7.86 0.00 4.30
5055 7740 4.832608 GACGGGTGGTCGATGGCC 62.833 72.222 0.00 0.00 35.61 5.36
5062 7747 1.810030 GCAATCTCGACGGGTGGTC 60.810 63.158 0.00 0.00 42.48 4.02
5063 7748 2.264794 GCAATCTCGACGGGTGGT 59.735 61.111 0.00 0.00 0.00 4.16
5064 7749 2.511600 GGCAATCTCGACGGGTGG 60.512 66.667 0.00 0.00 0.00 4.61
5065 7750 1.519455 GAGGCAATCTCGACGGGTG 60.519 63.158 0.00 0.00 32.18 4.61
5066 7751 1.668101 GAGAGGCAATCTCGACGGGT 61.668 60.000 0.00 0.00 44.95 5.28
5067 7752 1.066587 GAGAGGCAATCTCGACGGG 59.933 63.158 2.76 0.00 44.95 5.28
5068 7753 4.719997 GAGAGGCAATCTCGACGG 57.280 61.111 2.76 0.00 44.95 4.79
5094 7779 2.123077 ATGGCGAGGGGAGAGGAG 60.123 66.667 0.00 0.00 0.00 3.69
5095 7780 2.123251 GATGGCGAGGGGAGAGGA 60.123 66.667 0.00 0.00 0.00 3.71
5096 7781 3.610669 CGATGGCGAGGGGAGAGG 61.611 72.222 0.00 0.00 40.82 3.69
5097 7782 4.292178 GCGATGGCGAGGGGAGAG 62.292 72.222 0.00 0.00 40.82 3.20
5126 7811 4.491409 GAGGGGAAAGGAGCCGGC 62.491 72.222 21.89 21.89 0.00 6.13
5127 7812 3.798511 GGAGGGGAAAGGAGCCGG 61.799 72.222 0.00 0.00 0.00 6.13
5128 7813 3.798511 GGGAGGGGAAAGGAGCCG 61.799 72.222 0.00 0.00 0.00 5.52
5129 7814 3.421386 GGGGAGGGGAAAGGAGCC 61.421 72.222 0.00 0.00 0.00 4.70
5130 7815 3.421386 GGGGGAGGGGAAAGGAGC 61.421 72.222 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.