Multiple sequence alignment - TraesCS3D01G164100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G164100 chr3D 100.000 4353 0 0 1 4353 135642974 135638622 0.000000e+00 8039.0
1 TraesCS3D01G164100 chr3D 96.035 681 27 0 1070 1750 427301846 427302526 0.000000e+00 1109.0
2 TraesCS3D01G164100 chr3D 100.000 110 0 0 4688 4797 135638287 135638178 2.260000e-48 204.0
3 TraesCS3D01G164100 chr3B 90.828 2573 129 33 652 3197 193629208 193626716 0.000000e+00 3345.0
4 TraesCS3D01G164100 chr3B 86.677 653 64 11 1 652 193629884 193629254 0.000000e+00 702.0
5 TraesCS3D01G164100 chr3B 90.930 441 19 3 3920 4345 193625957 193625523 1.500000e-159 573.0
6 TraesCS3D01G164100 chr3B 85.745 463 34 22 3196 3628 193626681 193626221 1.220000e-125 460.0
7 TraesCS3D01G164100 chr3B 90.763 249 21 2 3688 3934 193626224 193625976 9.950000e-87 331.0
8 TraesCS3D01G164100 chr3B 97.561 41 1 0 4688 4728 193625321 193625281 2.400000e-08 71.3
9 TraesCS3D01G164100 chr3A 92.424 594 27 4 684 1276 151010175 151009599 0.000000e+00 832.0
10 TraesCS3D01G164100 chr3A 85.191 655 65 14 1 652 151010891 151010266 1.130000e-180 643.0
11 TraesCS3D01G164100 chr3A 90.370 405 19 3 3962 4346 151003406 151003002 9.210000e-142 514.0
12 TraesCS3D01G164100 chr3A 82.353 102 18 0 1401 1502 164910669 164910770 6.610000e-14 89.8
13 TraesCS3D01G164100 chr2D 95.137 473 22 1 1073 1545 551836678 551836207 0.000000e+00 745.0
14 TraesCS3D01G164100 chr1B 87.958 191 20 3 410 599 443563782 443563970 6.250000e-54 222.0
15 TraesCS3D01G164100 chr2A 82.117 274 32 7 329 599 527922475 527922216 8.080000e-53 219.0
16 TraesCS3D01G164100 chr2A 86.441 118 14 1 410 525 539132880 539132997 1.400000e-25 128.0
17 TraesCS3D01G164100 chr6D 81.295 278 31 7 329 599 315980196 315980459 6.290000e-49 206.0
18 TraesCS3D01G164100 chr7B 80.385 260 33 8 345 601 673685303 673685059 1.060000e-41 182.0
19 TraesCS3D01G164100 chr2B 82.902 193 30 3 410 601 642811352 642811542 2.300000e-38 171.0
20 TraesCS3D01G164100 chr2B 80.861 209 21 9 410 599 759258758 759258550 3.870000e-31 147.0
21 TraesCS3D01G164100 chrUn 89.744 117 11 1 410 525 224993455 224993339 1.080000e-31 148.0
22 TraesCS3D01G164100 chrUn 80.769 208 22 8 410 599 231073379 231073586 3.870000e-31 147.0
23 TraesCS3D01G164100 chr5B 89.744 117 11 1 410 525 315887879 315887995 1.080000e-31 148.0
24 TraesCS3D01G164100 chr4B 80.500 200 24 5 328 525 197302703 197302889 6.470000e-29 139.0
25 TraesCS3D01G164100 chr1D 100.000 29 0 0 1338 1366 383717167 383717195 2.000000e-03 54.7
26 TraesCS3D01G164100 chr6A 96.875 32 0 1 1336 1366 105742729 105742698 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G164100 chr3D 135638178 135642974 4796 True 4121.500000 8039 100.000000 1 4797 2 chr3D.!!$R1 4796
1 TraesCS3D01G164100 chr3D 427301846 427302526 680 False 1109.000000 1109 96.035000 1070 1750 1 chr3D.!!$F1 680
2 TraesCS3D01G164100 chr3B 193625281 193629884 4603 True 913.716667 3345 90.417333 1 4728 6 chr3B.!!$R1 4727
3 TraesCS3D01G164100 chr3A 151009599 151010891 1292 True 737.500000 832 88.807500 1 1276 2 chr3A.!!$R2 1275

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
479 481 0.179936 CCCAAAGCCCAAAAGCACAA 59.820 50.0 0.0 0.0 34.23 3.33 F
1947 2012 0.179020 TGGAGCACAGGGTGAACTTG 60.179 55.0 0.0 0.0 35.23 3.16 F
2589 2654 0.254747 TCCCCCGCAGAAAATAGGTG 59.745 55.0 0.0 0.0 0.00 4.00 F
3677 3829 0.392706 TTGTGAGTGCTGGATCGTGT 59.607 50.0 0.0 0.0 0.00 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2216 2281 0.441533 GCAACAGCACAGATGAGACG 59.558 55.0 0.0 0.0 0.00 4.18 R
2997 3085 0.252197 CAGTACCCCTGCCACTAACC 59.748 60.0 0.0 0.0 33.59 2.85 R
3743 3895 0.387239 GCAAAGCCGTCATTCACACC 60.387 55.0 0.0 0.0 0.00 4.16 R
4746 4946 0.025898 CTCGCAACATCACGCATCTG 59.974 55.0 0.0 0.0 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 40 5.525378 GCTGATATAACTTGTCCTGTTCAGG 59.475 44.000 12.20 12.20 0.00 3.86
46 48 5.552178 ACTTGTCCTGTTCAGGAGATTAAC 58.448 41.667 20.20 9.78 38.88 2.01
95 97 8.943002 GCTTAGTAGTATTTCTTTTGTTAGGCA 58.057 33.333 0.00 0.00 0.00 4.75
159 161 0.393077 AGGTTCGTTGGAGGTGTCTG 59.607 55.000 0.00 0.00 0.00 3.51
311 313 4.354212 CGCGCGTTCCACACACAG 62.354 66.667 24.19 0.00 0.00 3.66
318 320 2.546368 GCGTTCCACACACAGATTTGTA 59.454 45.455 0.00 0.00 35.25 2.41
322 324 4.085357 TCCACACACAGATTTGTAGCTT 57.915 40.909 0.00 0.00 35.25 3.74
327 329 5.008019 CACACACAGATTTGTAGCTTGACTT 59.992 40.000 0.00 0.00 35.25 3.01
380 382 2.568623 AAGCCTGACCGTCATTTCTT 57.431 45.000 0.62 3.38 0.00 2.52
385 387 3.600388 CCTGACCGTCATTTCTTAAGCT 58.400 45.455 0.62 0.00 0.00 3.74
386 388 3.372206 CCTGACCGTCATTTCTTAAGCTG 59.628 47.826 0.62 0.00 0.00 4.24
387 389 4.245660 CTGACCGTCATTTCTTAAGCTGA 58.754 43.478 0.62 0.00 0.00 4.26
388 390 4.245660 TGACCGTCATTTCTTAAGCTGAG 58.754 43.478 0.00 0.00 0.00 3.35
389 391 3.003480 ACCGTCATTTCTTAAGCTGAGC 58.997 45.455 0.00 0.00 0.00 4.26
390 392 3.265791 CCGTCATTTCTTAAGCTGAGCT 58.734 45.455 0.00 0.00 42.56 4.09
392 394 3.928992 CGTCATTTCTTAAGCTGAGCTCA 59.071 43.478 17.19 17.19 38.25 4.26
406 408 5.167218 CTGAGCTCAGCCTAAAATTAAGC 57.833 43.478 29.79 0.00 37.15 3.09
407 409 3.623060 TGAGCTCAGCCTAAAATTAAGCG 59.377 43.478 13.74 0.00 33.62 4.68
408 410 2.945668 AGCTCAGCCTAAAATTAAGCGG 59.054 45.455 0.00 0.00 33.62 5.52
440 442 1.884235 ACTCTCTGTTTTCAAGCCCG 58.116 50.000 0.00 0.00 0.00 6.13
448 450 4.722700 TTCAAGCCCGAGCCCAGC 62.723 66.667 0.00 0.00 41.25 4.85
470 472 1.548269 CGAAATTAAGCCCAAAGCCCA 59.452 47.619 0.00 0.00 45.47 5.36
476 478 1.344191 AAGCCCAAAGCCCAAAAGCA 61.344 50.000 0.00 0.00 45.47 3.91
479 481 0.179936 CCCAAAGCCCAAAAGCACAA 59.820 50.000 0.00 0.00 34.23 3.33
487 489 0.457851 CCAAAAGCACAACCCGAACA 59.542 50.000 0.00 0.00 0.00 3.18
488 490 1.555477 CAAAAGCACAACCCGAACAC 58.445 50.000 0.00 0.00 0.00 3.32
490 492 1.021968 AAAGCACAACCCGAACACTC 58.978 50.000 0.00 0.00 0.00 3.51
588 592 1.458209 AGGCTGCAAAACAAGGCCT 60.458 52.632 0.00 0.00 43.34 5.19
614 618 2.765969 CCTGGGTTGTCCATGCCT 59.234 61.111 0.00 0.00 46.01 4.75
618 622 0.844661 TGGGTTGTCCATGCCTAGGT 60.845 55.000 11.31 0.00 41.46 3.08
768 832 3.485431 CTTGTGCCAGCGCTCTCG 61.485 66.667 7.13 0.00 39.07 4.04
801 866 4.038042 CCACCACCTTTTTCTTCTTCCTTC 59.962 45.833 0.00 0.00 0.00 3.46
851 916 3.629398 CAGAGTTCAAATCCCACCATAGC 59.371 47.826 0.00 0.00 0.00 2.97
916 981 3.112709 GTCGCCCACGCTTCTGTC 61.113 66.667 0.00 0.00 39.84 3.51
917 982 3.611674 TCGCCCACGCTTCTGTCA 61.612 61.111 0.00 0.00 39.84 3.58
918 983 3.414700 CGCCCACGCTTCTGTCAC 61.415 66.667 0.00 0.00 0.00 3.67
919 984 2.280797 GCCCACGCTTCTGTCACA 60.281 61.111 0.00 0.00 0.00 3.58
920 985 2.607892 GCCCACGCTTCTGTCACAC 61.608 63.158 0.00 0.00 0.00 3.82
962 1027 3.706373 GAGAGCCACCCAAGCGGA 61.706 66.667 0.00 0.00 34.64 5.54
963 1028 3.672295 GAGAGCCACCCAAGCGGAG 62.672 68.421 0.00 0.00 34.64 4.63
1310 1375 0.948623 CTCAACATCACCGACCGCAA 60.949 55.000 0.00 0.00 0.00 4.85
1782 1847 2.284331 TTCCGCCTGGTGGAGCTA 60.284 61.111 26.64 11.81 43.44 3.32
1907 1972 4.451150 GTGGACGCTGGCCGATCA 62.451 66.667 0.00 0.00 41.02 2.92
1910 1975 3.838271 GACGCTGGCCGATCAGGA 61.838 66.667 0.00 0.00 45.00 3.86
1947 2012 0.179020 TGGAGCACAGGGTGAACTTG 60.179 55.000 0.00 0.00 35.23 3.16
1953 2018 1.966451 CAGGGTGAACTTGGCGGAC 60.966 63.158 0.00 0.00 0.00 4.79
1967 2032 4.530857 GGACGTCTGGGCGGATGG 62.531 72.222 16.46 0.00 35.98 3.51
2062 2127 1.271379 TGTACTTCTTCCTGGGCAAGC 60.271 52.381 0.00 0.00 0.00 4.01
2158 2223 3.842923 ATGTCTCCTCCCGCTGCG 61.843 66.667 16.34 16.34 0.00 5.18
2216 2281 9.337396 TGTAGGTAATCAACAATAATCCACATC 57.663 33.333 0.00 0.00 0.00 3.06
2254 2319 5.183522 TGTTGCTTTGATGCTGTTGATATGA 59.816 36.000 0.00 0.00 0.00 2.15
2255 2320 5.494632 TGCTTTGATGCTGTTGATATGAG 57.505 39.130 0.00 0.00 0.00 2.90
2256 2321 4.337274 TGCTTTGATGCTGTTGATATGAGG 59.663 41.667 0.00 0.00 0.00 3.86
2257 2322 4.337555 GCTTTGATGCTGTTGATATGAGGT 59.662 41.667 0.00 0.00 0.00 3.85
2258 2323 5.163581 GCTTTGATGCTGTTGATATGAGGTT 60.164 40.000 0.00 0.00 0.00 3.50
2259 2324 6.441093 TTTGATGCTGTTGATATGAGGTTC 57.559 37.500 0.00 0.00 0.00 3.62
2261 2326 5.121105 TGATGCTGTTGATATGAGGTTCAG 58.879 41.667 0.00 0.00 0.00 3.02
2262 2327 4.824479 TGCTGTTGATATGAGGTTCAGA 57.176 40.909 0.00 0.00 0.00 3.27
2265 2330 4.937620 GCTGTTGATATGAGGTTCAGAACA 59.062 41.667 15.36 0.00 0.00 3.18
2266 2331 5.412594 GCTGTTGATATGAGGTTCAGAACAA 59.587 40.000 15.36 0.59 29.92 2.83
2267 2332 6.094603 GCTGTTGATATGAGGTTCAGAACAAT 59.905 38.462 15.36 7.88 33.99 2.71
2306 2371 1.746787 TCACGCTGATACGCCTTCTAA 59.253 47.619 0.00 0.00 36.19 2.10
2311 2376 2.221981 GCTGATACGCCTTCTAATGTGC 59.778 50.000 0.00 0.00 0.00 4.57
2317 2382 1.524355 CGCCTTCTAATGTGCTGATCG 59.476 52.381 0.00 0.00 0.00 3.69
2327 2392 0.933097 GTGCTGATCGTGTATGCTGG 59.067 55.000 0.00 0.00 0.00 4.85
2338 2403 4.276431 TCGTGTATGCTGGACGTGATTATA 59.724 41.667 0.00 0.00 34.69 0.98
2365 2430 7.285401 CCTCAAATATGTGGTTTTGGTAGCTAT 59.715 37.037 0.00 0.00 35.83 2.97
2366 2431 9.337396 CTCAAATATGTGGTTTTGGTAGCTATA 57.663 33.333 0.00 0.00 34.38 1.31
2370 2435 5.093849 TGTGGTTTTGGTAGCTATAGGAC 57.906 43.478 0.00 0.00 0.00 3.85
2395 2460 7.147759 ACCCTATAATGATCTGATCCTGATTCG 60.148 40.741 14.71 0.10 0.00 3.34
2406 2471 3.040147 TCCTGATTCGTGTTTGGACTC 57.960 47.619 0.00 0.00 0.00 3.36
2418 2483 6.208007 TCGTGTTTGGACTCTGAGATAGTTTA 59.792 38.462 12.44 0.00 0.00 2.01
2423 2488 7.397892 TTGGACTCTGAGATAGTTTACTCTG 57.602 40.000 12.44 0.00 34.65 3.35
2425 2490 6.600032 TGGACTCTGAGATAGTTTACTCTGTC 59.400 42.308 12.44 0.00 34.98 3.51
2472 2537 3.123804 CACACATATTACCGTCTCCTGC 58.876 50.000 0.00 0.00 0.00 4.85
2473 2538 2.764010 ACACATATTACCGTCTCCTGCA 59.236 45.455 0.00 0.00 0.00 4.41
2482 2547 4.701956 ACCGTCTCCTGCAAATTTTATG 57.298 40.909 0.00 0.00 0.00 1.90
2486 2551 4.201950 CGTCTCCTGCAAATTTTATGGGAG 60.202 45.833 14.89 14.89 39.88 4.30
2489 2554 4.671831 TCCTGCAAATTTTATGGGAGTGA 58.328 39.130 0.00 0.00 0.00 3.41
2490 2555 5.083122 TCCTGCAAATTTTATGGGAGTGAA 58.917 37.500 0.00 0.00 0.00 3.18
2537 2602 6.938698 TTAAACTGTACATCCTCTTACCCA 57.061 37.500 0.00 0.00 0.00 4.51
2538 2603 7.504926 TTAAACTGTACATCCTCTTACCCAT 57.495 36.000 0.00 0.00 0.00 4.00
2539 2604 8.612486 TTAAACTGTACATCCTCTTACCCATA 57.388 34.615 0.00 0.00 0.00 2.74
2540 2605 7.691993 AAACTGTACATCCTCTTACCCATAT 57.308 36.000 0.00 0.00 0.00 1.78
2541 2606 6.919775 ACTGTACATCCTCTTACCCATATC 57.080 41.667 0.00 0.00 0.00 1.63
2542 2607 6.625267 ACTGTACATCCTCTTACCCATATCT 58.375 40.000 0.00 0.00 0.00 1.98
2543 2608 6.495181 ACTGTACATCCTCTTACCCATATCTG 59.505 42.308 0.00 0.00 0.00 2.90
2544 2609 5.780282 TGTACATCCTCTTACCCATATCTGG 59.220 44.000 0.00 0.00 42.73 3.86
2545 2610 3.584848 ACATCCTCTTACCCATATCTGGC 59.415 47.826 0.00 0.00 41.64 4.85
2546 2611 2.621070 TCCTCTTACCCATATCTGGCC 58.379 52.381 0.00 0.00 41.64 5.36
2547 2612 2.182312 TCCTCTTACCCATATCTGGCCT 59.818 50.000 3.32 0.00 41.64 5.19
2548 2613 2.982488 CCTCTTACCCATATCTGGCCTT 59.018 50.000 3.32 0.00 41.64 4.35
2549 2614 3.244700 CCTCTTACCCATATCTGGCCTTG 60.245 52.174 3.32 0.00 41.64 3.61
2550 2615 3.392616 CTCTTACCCATATCTGGCCTTGT 59.607 47.826 3.32 0.00 41.64 3.16
2551 2616 3.391296 TCTTACCCATATCTGGCCTTGTC 59.609 47.826 3.32 0.00 41.64 3.18
2562 2627 5.957771 TCTGGCCTTGTCTATAAATGAGT 57.042 39.130 3.32 0.00 0.00 3.41
2575 2640 5.632034 ATAAATGAGTCTGTAGTTCCCCC 57.368 43.478 0.00 0.00 0.00 5.40
2587 2652 1.064685 AGTTCCCCCGCAGAAAATAGG 60.065 52.381 0.00 0.00 0.00 2.57
2589 2654 0.254747 TCCCCCGCAGAAAATAGGTG 59.745 55.000 0.00 0.00 0.00 4.00
2592 2657 1.133792 CCCCGCAGAAAATAGGTGGAT 60.134 52.381 0.00 0.00 34.10 3.41
2624 2689 8.030106 AGAGTAAGCAACTACATTCTTCAGTAC 58.970 37.037 0.00 0.00 39.07 2.73
2638 2703 9.049523 CATTCTTCAGTACATATACTTGCACAT 57.950 33.333 0.00 0.00 39.80 3.21
2639 2704 8.424274 TTCTTCAGTACATATACTTGCACATG 57.576 34.615 0.00 0.00 39.80 3.21
2640 2705 6.479990 TCTTCAGTACATATACTTGCACATGC 59.520 38.462 0.00 0.00 39.80 4.06
2647 2712 2.423382 TACTTGCACATGCCCTGCCA 62.423 55.000 0.49 0.00 41.18 4.92
2666 2731 4.398988 TGCCAATGCTAAGGTGTCAATTAG 59.601 41.667 2.90 2.90 38.71 1.73
2674 2739 2.704572 AGGTGTCAATTAGCACAGCTC 58.295 47.619 11.90 0.00 45.99 4.09
2689 2754 2.093764 ACAGCTCCAGTGCTAGTCATTC 60.094 50.000 0.00 0.00 41.98 2.67
2699 2764 3.799420 GTGCTAGTCATTCCGTCAGAATC 59.201 47.826 0.00 0.00 43.63 2.52
2757 2838 8.947055 AATGCATTGGAAATGATTTAGTTACC 57.053 30.769 12.09 0.00 0.00 2.85
2767 2848 9.117183 GAAATGATTTAGTTACCGGTTATCCTT 57.883 33.333 15.04 3.71 0.00 3.36
2768 2849 8.446599 AATGATTTAGTTACCGGTTATCCTTG 57.553 34.615 15.04 0.00 0.00 3.61
2769 2850 5.818857 TGATTTAGTTACCGGTTATCCTTGC 59.181 40.000 15.04 0.00 0.00 4.01
2770 2851 2.704464 AGTTACCGGTTATCCTTGCC 57.296 50.000 15.04 0.00 0.00 4.52
2771 2852 1.910671 AGTTACCGGTTATCCTTGCCA 59.089 47.619 15.04 0.00 0.00 4.92
2772 2853 2.508300 AGTTACCGGTTATCCTTGCCAT 59.492 45.455 15.04 0.00 0.00 4.40
2773 2854 3.712733 AGTTACCGGTTATCCTTGCCATA 59.287 43.478 15.04 0.00 0.00 2.74
2774 2855 2.632987 ACCGGTTATCCTTGCCATAC 57.367 50.000 0.00 0.00 0.00 2.39
2775 2856 1.841277 ACCGGTTATCCTTGCCATACA 59.159 47.619 0.00 0.00 0.00 2.29
2782 2863 2.732844 TCCTTGCCATACATGCATCA 57.267 45.000 0.00 0.00 38.76 3.07
2786 2867 2.547299 TGCCATACATGCATCATCGA 57.453 45.000 0.00 0.00 32.85 3.59
2835 2916 8.610248 TGTTTTAGATGTTCAATTCTCCGTTA 57.390 30.769 0.00 0.00 0.00 3.18
2851 2932 5.064707 TCTCCGTTAATGCAGATTTTGTAGC 59.935 40.000 0.00 0.00 0.00 3.58
2883 2964 2.916716 GACAACAACTTGTGTGCAGTTG 59.083 45.455 12.70 12.70 45.77 3.16
2891 2972 2.549064 TGTGTGCAGTTGTATCAGCT 57.451 45.000 0.00 0.00 0.00 4.24
2897 2978 2.553602 TGCAGTTGTATCAGCTTGTTGG 59.446 45.455 0.00 0.00 0.00 3.77
2904 2985 7.549134 CAGTTGTATCAGCTTGTTGGAACTATA 59.451 37.037 0.00 0.00 0.00 1.31
2905 2986 8.267894 AGTTGTATCAGCTTGTTGGAACTATAT 58.732 33.333 0.00 0.00 0.00 0.86
2950 3031 6.779860 ACTGTAGAAACTAATTCACCCATGT 58.220 36.000 0.00 0.00 40.72 3.21
2955 3036 9.530633 GTAGAAACTAATTCACCCATGTAGTAG 57.469 37.037 0.00 0.00 40.72 2.57
2997 3085 4.159879 ACTGGTTTCCTATTCCTGTAGTCG 59.840 45.833 0.00 0.00 33.02 4.18
3001 3089 5.127682 GGTTTCCTATTCCTGTAGTCGGTTA 59.872 44.000 0.00 0.00 0.00 2.85
3009 3097 0.892755 TGTAGTCGGTTAGTGGCAGG 59.107 55.000 0.00 0.00 0.00 4.85
3025 3113 0.759346 CAGGGGTACTGCCATAGACC 59.241 60.000 0.00 0.00 40.97 3.85
3026 3114 0.400093 AGGGGTACTGCCATAGACCC 60.400 60.000 0.00 0.00 41.90 4.46
3027 3115 1.746517 GGGTACTGCCATAGACCCG 59.253 63.158 0.00 0.00 37.16 5.28
3041 3129 3.446442 AGACCCGGAACTACTGAAGTA 57.554 47.619 0.73 0.00 37.50 2.24
3042 3130 3.087781 AGACCCGGAACTACTGAAGTAC 58.912 50.000 0.73 0.00 37.50 2.73
3043 3131 2.165234 GACCCGGAACTACTGAAGTACC 59.835 54.545 0.73 0.00 37.50 3.34
3081 3169 9.175060 CGATAGTACTGAGTGTTTATCTTCATG 57.825 37.037 5.39 0.00 0.00 3.07
3088 3176 7.819900 ACTGAGTGTTTATCTTCATGGTCTTAC 59.180 37.037 0.00 0.00 0.00 2.34
3137 3225 2.290641 GTGTTCCAGTTTAGGCTGTGTG 59.709 50.000 0.00 0.00 34.84 3.82
3138 3226 2.171659 TGTTCCAGTTTAGGCTGTGTGA 59.828 45.455 0.00 0.00 34.84 3.58
3141 3229 3.211045 TCCAGTTTAGGCTGTGTGAAAC 58.789 45.455 0.00 0.00 34.84 2.78
3190 3278 7.839705 AGGAGTTTCAACTGTATATGACCTCTA 59.160 37.037 0.00 0.00 39.88 2.43
3235 3358 8.490311 TCCTAAAACAACCAATGAAGGAATTTT 58.510 29.630 0.00 0.00 30.21 1.82
3316 3439 6.050432 TGCATATTTCAGAATTGGAAATGCC 58.950 36.000 18.30 10.51 42.99 4.40
3337 3461 3.118920 CCATCTCTGCATCATGGCAAAAA 60.119 43.478 5.92 0.00 44.40 1.94
3345 3469 3.118519 GCATCATGGCAAAAAGGGATTCT 60.119 43.478 0.00 0.00 0.00 2.40
3361 3485 4.141620 GGGATTCTGCTTCTCTGGACATAA 60.142 45.833 0.00 0.00 0.00 1.90
3362 3486 5.455899 GGGATTCTGCTTCTCTGGACATAAT 60.456 44.000 0.00 0.00 0.00 1.28
3363 3487 5.469421 GGATTCTGCTTCTCTGGACATAATG 59.531 44.000 0.00 0.00 0.00 1.90
3365 3489 5.426689 TCTGCTTCTCTGGACATAATGTT 57.573 39.130 0.00 0.00 0.00 2.71
3366 3490 6.544928 TCTGCTTCTCTGGACATAATGTTA 57.455 37.500 0.00 0.00 0.00 2.41
3367 3491 7.129457 TCTGCTTCTCTGGACATAATGTTAT 57.871 36.000 0.00 0.00 0.00 1.89
3368 3492 8.250143 TCTGCTTCTCTGGACATAATGTTATA 57.750 34.615 0.00 0.00 0.00 0.98
3371 3495 9.851686 TGCTTCTCTGGACATAATGTTATATTT 57.148 29.630 0.00 0.00 0.00 1.40
3394 3532 8.526667 TTTCTATCTCTTCACTGTAGCATAGT 57.473 34.615 0.00 0.00 0.00 2.12
3396 3534 7.057264 TCTATCTCTTCACTGTAGCATAGTGT 58.943 38.462 12.68 0.00 44.49 3.55
3411 3549 5.010516 AGCATAGTGTATCTACCTGCTTCTG 59.989 44.000 0.00 0.00 40.14 3.02
3457 3595 7.928103 TCGAATGACAAGAGTAAGGTAGATAC 58.072 38.462 0.00 0.00 0.00 2.24
3459 3597 8.071368 CGAATGACAAGAGTAAGGTAGATACTC 58.929 40.741 5.74 5.74 46.22 2.59
3515 3658 7.327214 TCAATAAAAAGGGTTTGCATGGTATC 58.673 34.615 0.00 0.00 0.00 2.24
3517 3660 8.474025 CAATAAAAAGGGTTTGCATGGTATCTA 58.526 33.333 0.00 0.00 0.00 1.98
3518 3661 6.530019 AAAAAGGGTTTGCATGGTATCTAG 57.470 37.500 0.00 0.00 0.00 2.43
3519 3662 3.214696 AGGGTTTGCATGGTATCTAGC 57.785 47.619 0.00 0.00 0.00 3.42
3520 3663 2.780010 AGGGTTTGCATGGTATCTAGCT 59.220 45.455 0.00 0.00 0.00 3.32
3521 3664 2.880890 GGGTTTGCATGGTATCTAGCTG 59.119 50.000 0.00 0.00 0.00 4.24
3524 3667 2.916702 TGCATGGTATCTAGCTGTGG 57.083 50.000 0.00 0.00 0.00 4.17
3525 3668 2.118679 TGCATGGTATCTAGCTGTGGT 58.881 47.619 0.00 0.00 0.00 4.16
3526 3669 2.158914 TGCATGGTATCTAGCTGTGGTG 60.159 50.000 0.00 0.00 0.00 4.17
3529 3672 3.101643 TGGTATCTAGCTGTGGTGAGT 57.898 47.619 0.00 0.00 0.00 3.41
3531 3674 4.606210 TGGTATCTAGCTGTGGTGAGTTA 58.394 43.478 0.00 0.00 0.00 2.24
3532 3675 5.020795 TGGTATCTAGCTGTGGTGAGTTAA 58.979 41.667 0.00 0.00 0.00 2.01
3533 3676 5.661312 TGGTATCTAGCTGTGGTGAGTTAAT 59.339 40.000 0.00 0.00 0.00 1.40
3534 3677 6.183360 TGGTATCTAGCTGTGGTGAGTTAATC 60.183 42.308 0.00 0.00 0.00 1.75
3535 3678 4.371855 TCTAGCTGTGGTGAGTTAATCG 57.628 45.455 0.00 0.00 0.00 3.34
3536 3679 3.762288 TCTAGCTGTGGTGAGTTAATCGT 59.238 43.478 0.00 0.00 0.00 3.73
3537 3680 4.945543 TCTAGCTGTGGTGAGTTAATCGTA 59.054 41.667 0.00 0.00 0.00 3.43
3538 3681 4.530710 AGCTGTGGTGAGTTAATCGTAA 57.469 40.909 0.00 0.00 0.00 3.18
3539 3682 4.495422 AGCTGTGGTGAGTTAATCGTAAG 58.505 43.478 0.00 0.00 0.00 2.34
3540 3683 3.617263 GCTGTGGTGAGTTAATCGTAAGG 59.383 47.826 0.00 0.00 38.47 2.69
3541 3684 4.181578 CTGTGGTGAGTTAATCGTAAGGG 58.818 47.826 0.00 0.00 38.47 3.95
3542 3685 2.934553 GTGGTGAGTTAATCGTAAGGGC 59.065 50.000 0.00 0.00 38.47 5.19
3554 3706 4.561735 TCGTAAGGGCTGTTTTCTTTTG 57.438 40.909 0.00 0.00 38.47 2.44
3584 3736 3.320826 ACCAAAGTTAATTCTGCACCACC 59.679 43.478 0.00 0.00 0.00 4.61
3588 3740 6.239176 CCAAAGTTAATTCTGCACCACCTTAA 60.239 38.462 0.00 0.00 0.00 1.85
3603 3755 7.465379 GCACCACCTTAATTTTTGTTTCACTTC 60.465 37.037 0.00 0.00 0.00 3.01
3605 3757 8.097662 ACCACCTTAATTTTTGTTTCACTTCAA 58.902 29.630 0.00 0.00 0.00 2.69
3634 3786 8.144862 ACATTCTTTAATCCAAATTTAGGCCA 57.855 30.769 5.01 0.00 0.00 5.36
3635 3787 8.601546 ACATTCTTTAATCCAAATTTAGGCCAA 58.398 29.630 5.01 0.00 0.00 4.52
3636 3788 9.447157 CATTCTTTAATCCAAATTTAGGCCAAA 57.553 29.630 5.01 3.96 0.00 3.28
3637 3789 8.840833 TTCTTTAATCCAAATTTAGGCCAAAC 57.159 30.769 5.01 0.00 0.00 2.93
3638 3790 7.093992 TCTTTAATCCAAATTTAGGCCAAACG 58.906 34.615 5.01 0.00 0.00 3.60
3639 3791 6.591750 TTAATCCAAATTTAGGCCAAACGA 57.408 33.333 5.01 0.00 0.00 3.85
3640 3792 5.675684 AATCCAAATTTAGGCCAAACGAT 57.324 34.783 5.01 1.47 0.00 3.73
3641 3793 6.783708 AATCCAAATTTAGGCCAAACGATA 57.216 33.333 5.01 0.00 0.00 2.92
3642 3794 6.783708 ATCCAAATTTAGGCCAAACGATAA 57.216 33.333 5.01 0.00 0.00 1.75
3643 3795 6.591750 TCCAAATTTAGGCCAAACGATAAA 57.408 33.333 5.01 0.00 0.00 1.40
3644 3796 7.176589 TCCAAATTTAGGCCAAACGATAAAT 57.823 32.000 5.01 2.29 30.98 1.40
3645 3797 7.616313 TCCAAATTTAGGCCAAACGATAAATT 58.384 30.769 5.01 8.84 38.71 1.82
3646 3798 7.547370 TCCAAATTTAGGCCAAACGATAAATTG 59.453 33.333 15.17 10.79 37.69 2.32
3647 3799 7.547370 CCAAATTTAGGCCAAACGATAAATTGA 59.453 33.333 15.17 0.00 37.69 2.57
3648 3800 8.930760 CAAATTTAGGCCAAACGATAAATTGAA 58.069 29.630 15.17 0.00 37.69 2.69
3649 3801 9.665719 AAATTTAGGCCAAACGATAAATTGAAT 57.334 25.926 15.17 2.39 37.69 2.57
3650 3802 8.647143 ATTTAGGCCAAACGATAAATTGAATG 57.353 30.769 5.01 0.00 0.00 2.67
3651 3803 4.432712 AGGCCAAACGATAAATTGAATGC 58.567 39.130 5.01 0.00 0.00 3.56
3652 3804 4.160252 AGGCCAAACGATAAATTGAATGCT 59.840 37.500 5.01 0.00 0.00 3.79
3653 3805 4.869861 GGCCAAACGATAAATTGAATGCTT 59.130 37.500 0.00 0.00 0.00 3.91
3654 3806 6.039616 GGCCAAACGATAAATTGAATGCTTA 58.960 36.000 0.00 0.00 0.00 3.09
3655 3807 6.701400 GGCCAAACGATAAATTGAATGCTTAT 59.299 34.615 0.00 0.00 0.00 1.73
3656 3808 7.224557 GGCCAAACGATAAATTGAATGCTTATT 59.775 33.333 0.00 0.00 0.00 1.40
3657 3809 8.603181 GCCAAACGATAAATTGAATGCTTATTT 58.397 29.630 0.00 0.00 0.00 1.40
3667 3819 6.768029 TTGAATGCTTATTTTTGTGAGTGC 57.232 33.333 0.00 0.00 0.00 4.40
3668 3820 6.088016 TGAATGCTTATTTTTGTGAGTGCT 57.912 33.333 0.00 0.00 0.00 4.40
3669 3821 5.921976 TGAATGCTTATTTTTGTGAGTGCTG 59.078 36.000 0.00 0.00 0.00 4.41
3670 3822 4.241590 TGCTTATTTTTGTGAGTGCTGG 57.758 40.909 0.00 0.00 0.00 4.85
3671 3823 3.888323 TGCTTATTTTTGTGAGTGCTGGA 59.112 39.130 0.00 0.00 0.00 3.86
3672 3824 4.523943 TGCTTATTTTTGTGAGTGCTGGAT 59.476 37.500 0.00 0.00 0.00 3.41
3673 3825 5.098211 GCTTATTTTTGTGAGTGCTGGATC 58.902 41.667 0.00 0.00 0.00 3.36
3674 3826 3.837213 ATTTTTGTGAGTGCTGGATCG 57.163 42.857 0.00 0.00 0.00 3.69
3675 3827 2.254546 TTTTGTGAGTGCTGGATCGT 57.745 45.000 0.00 0.00 0.00 3.73
3676 3828 1.511850 TTTGTGAGTGCTGGATCGTG 58.488 50.000 0.00 0.00 0.00 4.35
3677 3829 0.392706 TTGTGAGTGCTGGATCGTGT 59.607 50.000 0.00 0.00 0.00 4.49
3678 3830 1.253100 TGTGAGTGCTGGATCGTGTA 58.747 50.000 0.00 0.00 0.00 2.90
3679 3831 1.067846 TGTGAGTGCTGGATCGTGTAC 60.068 52.381 0.00 0.00 0.00 2.90
3680 3832 1.202582 GTGAGTGCTGGATCGTGTACT 59.797 52.381 6.95 6.95 32.11 2.73
3681 3833 1.472878 TGAGTGCTGGATCGTGTACTC 59.527 52.381 19.88 19.88 43.12 2.59
3682 3834 1.746220 GAGTGCTGGATCGTGTACTCT 59.254 52.381 19.61 2.37 40.86 3.24
3683 3835 1.474478 AGTGCTGGATCGTGTACTCTG 59.526 52.381 0.00 0.00 0.00 3.35
3684 3836 1.472878 GTGCTGGATCGTGTACTCTGA 59.527 52.381 0.00 0.00 0.00 3.27
3685 3837 1.472878 TGCTGGATCGTGTACTCTGAC 59.527 52.381 0.00 0.00 0.00 3.51
3686 3838 1.746220 GCTGGATCGTGTACTCTGACT 59.254 52.381 0.00 0.00 0.00 3.41
3693 3845 7.052248 TGGATCGTGTACTCTGACTAATTAGA 58.948 38.462 19.38 0.00 0.00 2.10
3731 3883 7.921786 TTCAACATTGAAGGTATTCCTAGTG 57.078 36.000 2.89 0.00 44.35 2.74
3738 3890 2.946785 AGGTATTCCTAGTGAGACCGG 58.053 52.381 0.00 0.00 43.12 5.28
3743 3895 0.965866 TCCTAGTGAGACCGGCAGTG 60.966 60.000 0.00 0.00 0.00 3.66
3751 3903 1.302511 GACCGGCAGTGGTGTGAAT 60.303 57.895 0.00 0.00 44.01 2.57
3754 3906 1.577328 CCGGCAGTGGTGTGAATGAC 61.577 60.000 0.00 0.00 0.00 3.06
3759 3911 0.108585 AGTGGTGTGAATGACGGCTT 59.891 50.000 0.00 0.00 0.00 4.35
3777 3929 2.554032 GCTTTGCTTCTGTGGCTTCTAA 59.446 45.455 0.00 0.00 0.00 2.10
3832 3984 1.896660 GTGGCCTTTTCGCAGGTGA 60.897 57.895 3.32 0.00 36.15 4.02
3868 4020 3.056322 GCCTCTGCATTCCATCTTGTTTT 60.056 43.478 0.00 0.00 37.47 2.43
3871 4023 5.279106 CCTCTGCATTCCATCTTGTTTTGAA 60.279 40.000 0.00 0.00 0.00 2.69
3875 4027 5.701750 TGCATTCCATCTTGTTTTGAAATGG 59.298 36.000 0.00 0.00 38.58 3.16
3913 4067 0.674581 TGAGCCGCTGTCTTCCATTG 60.675 55.000 0.00 0.00 0.00 2.82
3916 4070 1.798735 CCGCTGTCTTCCATTGCTG 59.201 57.895 0.00 0.00 0.00 4.41
3942 4129 5.621193 ACAGCTTGTAACAGTTATGTCCTT 58.379 37.500 0.00 0.00 39.29 3.36
3970 4157 2.755103 CAGTTTGGTTCAGATAAGGCCC 59.245 50.000 0.00 0.00 0.00 5.80
3971 4158 2.649816 AGTTTGGTTCAGATAAGGCCCT 59.350 45.455 0.00 0.00 0.00 5.19
3972 4159 2.755103 GTTTGGTTCAGATAAGGCCCTG 59.245 50.000 0.00 0.00 0.00 4.45
3973 4160 0.918983 TGGTTCAGATAAGGCCCTGG 59.081 55.000 0.00 0.00 0.00 4.45
3974 4161 1.213296 GGTTCAGATAAGGCCCTGGA 58.787 55.000 0.00 0.00 0.00 3.86
3975 4162 1.564348 GGTTCAGATAAGGCCCTGGAA 59.436 52.381 0.00 0.00 0.00 3.53
4023 4210 4.700213 GCAAGGTGGCTAGAATTAAGACAA 59.300 41.667 0.00 0.00 32.59 3.18
4035 4222 7.741554 AGAATTAAGACAACTCCTAGGTGAT 57.258 36.000 17.66 2.56 33.95 3.06
4144 4344 4.929808 ACTTCAGGTGTAACGAATTAGCTG 59.070 41.667 0.00 0.00 38.12 4.24
4168 4368 1.242076 ACTCACTTGCTTGCATGGAC 58.758 50.000 12.06 0.00 0.00 4.02
4208 4408 4.981806 AATTTACCGTTGCATGCTGTAT 57.018 36.364 20.33 3.31 0.00 2.29
4258 4458 5.434408 TCTGATCAAATGGAAGTGAGGATG 58.566 41.667 0.00 0.00 0.00 3.51
4261 4461 3.972133 TCAAATGGAAGTGAGGATGCAT 58.028 40.909 0.00 0.00 0.00 3.96
4262 4462 3.949754 TCAAATGGAAGTGAGGATGCATC 59.050 43.478 18.81 18.81 0.00 3.91
4307 4507 2.150397 ACAAACTTTCTCCGACCGAG 57.850 50.000 0.00 0.00 40.30 4.63
4311 4511 1.186267 ACTTTCTCCGACCGAGCCTT 61.186 55.000 0.00 0.00 38.62 4.35
4318 4518 1.592223 CGACCGAGCCTTTTCCTCT 59.408 57.895 0.00 0.00 0.00 3.69
4334 4534 7.824289 CCTTTTCCTCTCACATTGATGTAACTA 59.176 37.037 0.00 0.00 39.39 2.24
4336 4536 6.471233 TCCTCTCACATTGATGTAACTAGG 57.529 41.667 0.00 2.83 39.39 3.02
4337 4537 5.053145 CCTCTCACATTGATGTAACTAGGC 58.947 45.833 0.00 0.00 39.39 3.93
4338 4538 5.163364 CCTCTCACATTGATGTAACTAGGCT 60.163 44.000 0.00 0.00 39.39 4.58
4340 4540 7.417911 CCTCTCACATTGATGTAACTAGGCTAA 60.418 40.741 0.00 0.00 39.39 3.09
4341 4541 7.265673 TCTCACATTGATGTAACTAGGCTAAC 58.734 38.462 0.00 0.00 39.39 2.34
4342 4542 7.124298 TCTCACATTGATGTAACTAGGCTAACT 59.876 37.037 0.00 0.00 39.39 2.24
4343 4543 8.301252 TCACATTGATGTAACTAGGCTAACTA 57.699 34.615 0.00 0.00 39.39 2.24
4344 4544 8.414003 TCACATTGATGTAACTAGGCTAACTAG 58.586 37.037 0.00 0.00 45.79 2.57
4345 4545 7.169982 CACATTGATGTAACTAGGCTAACTAGC 59.830 40.741 0.00 0.00 45.00 3.42
4346 4546 7.070074 ACATTGATGTAACTAGGCTAACTAGCT 59.930 37.037 8.56 0.00 44.98 3.32
4728 4928 2.674380 CAAGGCTGGTCACCTGGC 60.674 66.667 18.66 18.66 45.64 4.85
4729 4929 3.971702 AAGGCTGGTCACCTGGCC 61.972 66.667 22.04 20.72 46.26 5.36
4733 4933 3.569210 CTGGTCACCTGGCCACCA 61.569 66.667 14.84 14.84 46.36 4.17
4734 4934 3.557903 CTGGTCACCTGGCCACCAG 62.558 68.421 23.33 23.33 46.36 4.00
4744 4944 3.379445 GCCACCAGCTGCTGCAAT 61.379 61.111 23.86 8.69 42.74 3.56
4745 4945 2.882876 CCACCAGCTGCTGCAATC 59.117 61.111 23.86 0.00 42.74 2.67
4746 4946 2.707849 CCACCAGCTGCTGCAATCC 61.708 63.158 23.86 0.00 42.74 3.01
4747 4947 1.974875 CACCAGCTGCTGCAATCCA 60.975 57.895 23.86 0.00 42.74 3.41
4748 4948 1.677966 ACCAGCTGCTGCAATCCAG 60.678 57.895 23.86 10.83 44.67 3.86
4749 4949 1.378119 CCAGCTGCTGCAATCCAGA 60.378 57.895 23.86 0.00 44.64 3.86
4750 4950 0.752009 CCAGCTGCTGCAATCCAGAT 60.752 55.000 23.86 3.74 44.64 2.90
4751 4951 0.382158 CAGCTGCTGCAATCCAGATG 59.618 55.000 17.73 11.04 44.64 2.90
4752 4952 1.065928 GCTGCTGCAATCCAGATGC 59.934 57.895 11.11 0.00 44.64 3.91
4753 4953 1.355563 CTGCTGCAATCCAGATGCG 59.644 57.895 3.02 0.00 46.76 4.73
4754 4954 1.374343 CTGCTGCAATCCAGATGCGT 61.374 55.000 3.02 0.00 46.76 5.24
4755 4955 1.063649 GCTGCAATCCAGATGCGTG 59.936 57.895 0.00 0.00 46.76 5.34
4756 4956 1.371337 GCTGCAATCCAGATGCGTGA 61.371 55.000 0.00 0.00 46.76 4.35
4757 4957 1.306148 CTGCAATCCAGATGCGTGAT 58.694 50.000 0.00 0.00 46.76 3.06
4758 4958 1.002792 CTGCAATCCAGATGCGTGATG 60.003 52.381 0.00 0.00 46.76 3.07
4759 4959 1.019673 GCAATCCAGATGCGTGATGT 58.980 50.000 0.00 0.00 33.57 3.06
4760 4960 1.402968 GCAATCCAGATGCGTGATGTT 59.597 47.619 0.00 0.00 33.57 2.71
4761 4961 2.793585 GCAATCCAGATGCGTGATGTTG 60.794 50.000 0.00 0.00 33.57 3.33
4762 4962 1.019673 ATCCAGATGCGTGATGTTGC 58.980 50.000 0.00 0.00 0.00 4.17
4763 4963 1.061411 CCAGATGCGTGATGTTGCG 59.939 57.895 0.00 0.00 0.00 4.85
4764 4964 1.360931 CCAGATGCGTGATGTTGCGA 61.361 55.000 0.00 0.00 0.00 5.10
4765 4965 0.025898 CAGATGCGTGATGTTGCGAG 59.974 55.000 0.00 0.00 0.00 5.03
4766 4966 1.086067 AGATGCGTGATGTTGCGAGG 61.086 55.000 0.00 0.00 0.00 4.63
4767 4967 1.361668 GATGCGTGATGTTGCGAGGT 61.362 55.000 0.00 0.00 0.00 3.85
4768 4968 0.955428 ATGCGTGATGTTGCGAGGTT 60.955 50.000 0.00 0.00 0.00 3.50
4769 4969 1.154413 GCGTGATGTTGCGAGGTTG 60.154 57.895 0.00 0.00 0.00 3.77
4770 4970 1.565156 GCGTGATGTTGCGAGGTTGA 61.565 55.000 0.00 0.00 0.00 3.18
4771 4971 0.163788 CGTGATGTTGCGAGGTTGAC 59.836 55.000 0.00 0.00 0.00 3.18
4772 4972 0.163788 GTGATGTTGCGAGGTTGACG 59.836 55.000 0.00 0.00 0.00 4.35
4773 4973 0.948623 TGATGTTGCGAGGTTGACGG 60.949 55.000 0.00 0.00 0.00 4.79
4774 4974 0.949105 GATGTTGCGAGGTTGACGGT 60.949 55.000 0.00 0.00 0.00 4.83
4775 4975 0.949105 ATGTTGCGAGGTTGACGGTC 60.949 55.000 0.00 0.00 0.00 4.79
4776 4976 2.355363 TTGCGAGGTTGACGGTCG 60.355 61.111 3.34 0.00 36.77 4.79
4779 4979 2.805353 CGAGGTTGACGGTCGCTG 60.805 66.667 3.34 0.00 0.00 5.18
4780 4980 3.112709 GAGGTTGACGGTCGCTGC 61.113 66.667 3.34 0.00 0.00 5.25
4781 4981 3.575351 GAGGTTGACGGTCGCTGCT 62.575 63.158 3.34 0.00 0.00 4.24
4782 4982 2.209064 GAGGTTGACGGTCGCTGCTA 62.209 60.000 3.34 0.00 0.00 3.49
4783 4983 2.092882 GGTTGACGGTCGCTGCTAC 61.093 63.158 3.34 0.00 0.00 3.58
4784 4984 1.372499 GTTGACGGTCGCTGCTACA 60.372 57.895 6.64 0.00 0.00 2.74
4785 4985 0.942410 GTTGACGGTCGCTGCTACAA 60.942 55.000 6.64 0.00 0.00 2.41
4786 4986 0.666274 TTGACGGTCGCTGCTACAAG 60.666 55.000 6.64 2.54 0.00 3.16
4787 4987 2.432628 ACGGTCGCTGCTACAAGC 60.433 61.111 6.64 0.00 42.82 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 97 1.277557 GAGCGATCATATGGGCCTCTT 59.722 52.381 4.53 0.00 0.00 2.85
103 105 3.677121 GCACTTAGGTGAGCGATCATATG 59.323 47.826 6.66 1.12 45.61 1.78
109 111 0.613260 TTGGCACTTAGGTGAGCGAT 59.387 50.000 9.51 0.00 45.61 4.58
183 185 3.537580 GCGGGTAATACAACCATGAAGA 58.462 45.455 0.00 0.00 41.67 2.87
255 257 7.385478 TCAATATACGCATCGCAATACCTTTTA 59.615 33.333 0.00 0.00 0.00 1.52
262 264 5.445806 GCATGTCAATATACGCATCGCAATA 60.446 40.000 0.00 0.00 0.00 1.90
298 300 3.363970 GCTACAAATCTGTGTGTGGAACG 60.364 47.826 0.00 0.00 36.89 3.95
299 301 3.815401 AGCTACAAATCTGTGTGTGGAAC 59.185 43.478 0.00 0.00 36.96 3.62
300 302 4.085357 AGCTACAAATCTGTGTGTGGAA 57.915 40.909 0.00 0.00 36.96 3.53
301 303 3.769739 AGCTACAAATCTGTGTGTGGA 57.230 42.857 0.00 0.00 36.96 4.02
302 304 3.814842 TCAAGCTACAAATCTGTGTGTGG 59.185 43.478 0.00 0.00 36.96 4.17
305 307 5.679734 AAGTCAAGCTACAAATCTGTGTG 57.320 39.130 0.00 0.00 36.96 3.82
306 308 7.801716 TTAAAGTCAAGCTACAAATCTGTGT 57.198 32.000 0.00 0.00 36.96 3.72
307 309 7.591426 GGTTTAAAGTCAAGCTACAAATCTGTG 59.409 37.037 0.00 0.00 36.96 3.66
311 313 6.084277 CGGGTTTAAAGTCAAGCTACAAATC 58.916 40.000 0.00 0.00 0.00 2.17
318 320 1.905637 CCCGGGTTTAAAGTCAAGCT 58.094 50.000 14.18 0.00 0.00 3.74
322 324 1.682323 GTTTGCCCGGGTTTAAAGTCA 59.318 47.619 24.63 5.60 0.00 3.41
327 329 1.505477 CGACGTTTGCCCGGGTTTAA 61.505 55.000 24.63 12.62 0.00 1.52
371 373 5.467902 CTGAGCTCAGCTTAAGAAATGAC 57.532 43.478 29.79 2.87 39.88 3.06
385 387 3.623060 CGCTTAATTTTAGGCTGAGCTCA 59.377 43.478 17.19 17.19 34.02 4.26
386 388 3.002759 CCGCTTAATTTTAGGCTGAGCTC 59.997 47.826 6.82 6.82 34.02 4.09
387 389 2.945668 CCGCTTAATTTTAGGCTGAGCT 59.054 45.455 3.72 0.00 34.02 4.09
388 390 2.033424 CCCGCTTAATTTTAGGCTGAGC 59.967 50.000 0.00 0.00 34.02 4.26
389 391 3.541632 TCCCGCTTAATTTTAGGCTGAG 58.458 45.455 0.00 0.00 34.02 3.35
390 392 3.637911 TCCCGCTTAATTTTAGGCTGA 57.362 42.857 0.00 0.00 34.02 4.26
392 394 2.688446 GCTTCCCGCTTAATTTTAGGCT 59.312 45.455 0.00 0.00 34.02 4.58
394 396 2.361119 GGGCTTCCCGCTTAATTTTAGG 59.639 50.000 0.00 0.00 39.13 2.69
407 409 1.763545 AGAGAGTATTTCGGGCTTCCC 59.236 52.381 0.00 0.00 41.09 3.97
408 410 2.168728 ACAGAGAGTATTTCGGGCTTCC 59.831 50.000 0.00 0.00 0.00 3.46
440 442 1.025041 CTTAATTTCGGGCTGGGCTC 58.975 55.000 0.00 0.00 0.00 4.70
448 450 1.134818 GGCTTTGGGCTTAATTTCGGG 60.135 52.381 0.00 0.00 41.46 5.14
449 451 1.134818 GGGCTTTGGGCTTAATTTCGG 60.135 52.381 0.00 0.00 41.46 4.30
470 472 1.404035 GAGTGTTCGGGTTGTGCTTTT 59.596 47.619 0.00 0.00 0.00 2.27
476 478 4.334481 CACTAAAAAGAGTGTTCGGGTTGT 59.666 41.667 0.00 0.00 41.67 3.32
487 489 3.488310 CACGTGCGTACACTAAAAAGAGT 59.512 43.478 0.82 0.00 45.10 3.24
488 490 3.660904 GCACGTGCGTACACTAAAAAGAG 60.661 47.826 26.77 0.00 45.10 2.85
490 492 2.033577 TGCACGTGCGTACACTAAAAAG 60.034 45.455 33.22 0.00 45.10 2.27
562 566 1.614903 TGTTTTGCAGCCTGGAAGATG 59.385 47.619 0.00 0.00 34.07 2.90
614 618 3.012518 CTCCGGAGTCGAGTAAAACCTA 58.987 50.000 24.04 0.00 39.00 3.08
618 622 0.169672 CGCTCCGGAGTCGAGTAAAA 59.830 55.000 31.54 0.00 39.00 1.52
768 832 2.750237 GGTGGTGGCCGATTGGTC 60.750 66.667 0.00 0.00 41.64 4.02
801 866 1.026718 GTCCGGAAAGATGGTGGCAG 61.027 60.000 5.23 0.00 0.00 4.85
851 916 2.267961 GGAACAGGGGCGTGTAGG 59.732 66.667 0.00 0.00 0.00 3.18
915 980 1.227645 GCTGTGCCTGTGAGTGTGA 60.228 57.895 0.00 0.00 0.00 3.58
916 981 2.256591 GGCTGTGCCTGTGAGTGTG 61.257 63.158 0.73 0.00 46.69 3.82
917 982 2.111878 GGCTGTGCCTGTGAGTGT 59.888 61.111 0.73 0.00 46.69 3.55
1015 1080 2.658593 GATGATCCACGACGGCGG 60.659 66.667 18.49 3.35 43.17 6.13
1281 1346 1.125021 GTGATGTTGAGCGTGACGAAG 59.875 52.381 10.10 0.00 0.00 3.79
1380 1445 4.430765 GAGCGGGCGTCGAGGAAA 62.431 66.667 9.75 0.00 42.43 3.13
1695 1760 1.907739 GCAGTGGAGGCAGTGGATA 59.092 57.895 0.00 0.00 0.00 2.59
1907 1972 3.477956 TTCCACTCCCCGGTGTCCT 62.478 63.158 0.00 0.00 35.63 3.85
1910 1975 2.928396 CCTTCCACTCCCCGGTGT 60.928 66.667 0.00 0.00 35.63 4.16
1911 1976 2.928396 ACCTTCCACTCCCCGGTG 60.928 66.667 0.00 0.00 37.00 4.94
1953 2018 4.227134 CTCCCATCCGCCCAGACG 62.227 72.222 0.00 0.00 0.00 4.18
1967 2032 2.125106 CGGTGGCCTTGTAGCTCC 60.125 66.667 3.32 0.00 0.00 4.70
1987 2052 1.067516 CACAGGTGTTTTCTTGGGCAG 59.932 52.381 0.00 0.00 0.00 4.85
2074 2139 3.414700 CCTCGTGCGCAGGTTGAC 61.415 66.667 27.39 6.68 0.00 3.18
2158 2223 2.048603 GCAGCTCCCATGGGTGAAC 61.049 63.158 32.49 19.15 34.56 3.18
2192 2257 8.208224 ACGATGTGGATTATTGTTGATTACCTA 58.792 33.333 0.00 0.00 0.00 3.08
2216 2281 0.441533 GCAACAGCACAGATGAGACG 59.558 55.000 0.00 0.00 0.00 4.18
2254 2319 6.360618 AGTCTTTCTCAATTGTTCTGAACCT 58.639 36.000 17.26 2.75 0.00 3.50
2255 2320 6.484977 AGAGTCTTTCTCAATTGTTCTGAACC 59.515 38.462 17.26 1.11 44.98 3.62
2256 2321 7.489574 AGAGTCTTTCTCAATTGTTCTGAAC 57.510 36.000 13.49 13.49 44.98 3.18
2306 2371 2.207590 CAGCATACACGATCAGCACAT 58.792 47.619 0.00 0.00 0.00 3.21
2311 2376 1.202302 ACGTCCAGCATACACGATCAG 60.202 52.381 4.76 0.00 37.00 2.90
2317 2382 4.684703 GGTATAATCACGTCCAGCATACAC 59.315 45.833 0.00 0.00 0.00 2.90
2327 2392 7.656137 ACCACATATTTGAGGTATAATCACGTC 59.344 37.037 3.53 0.00 43.96 4.34
2365 2430 7.035838 TCAGGATCAGATCATTATAGGGTCCTA 60.036 40.741 12.66 0.00 31.56 2.94
2366 2431 5.963253 CAGGATCAGATCATTATAGGGTCCT 59.037 44.000 12.66 0.00 32.88 3.85
2370 2435 7.147759 ACGAATCAGGATCAGATCATTATAGGG 60.148 40.741 12.66 0.00 0.00 3.53
2395 2460 7.379750 AGTAAACTATCTCAGAGTCCAAACAC 58.620 38.462 0.00 0.00 0.00 3.32
2418 2483 4.012374 CAACCAGCAAATATGGACAGAGT 58.988 43.478 0.00 0.00 40.51 3.24
2423 2488 5.183140 ACAGTTACAACCAGCAAATATGGAC 59.817 40.000 0.00 0.00 40.51 4.02
2425 2490 5.182950 TCACAGTTACAACCAGCAAATATGG 59.817 40.000 0.00 0.00 43.87 2.74
2432 2497 3.138304 GTGATCACAGTTACAACCAGCA 58.862 45.455 21.07 0.00 0.00 4.41
2433 2498 3.058914 GTGTGATCACAGTTACAACCAGC 60.059 47.826 28.54 8.72 42.74 4.85
2463 2528 3.694072 TCCCATAAAATTTGCAGGAGACG 59.306 43.478 0.00 0.00 0.00 4.18
2467 2532 4.671831 TCACTCCCATAAAATTTGCAGGA 58.328 39.130 0.00 0.00 0.00 3.86
2512 2577 7.924541 TGGGTAAGAGGATGTACAGTTTAATT 58.075 34.615 0.33 0.00 0.00 1.40
2513 2578 7.504926 TGGGTAAGAGGATGTACAGTTTAAT 57.495 36.000 0.33 0.00 0.00 1.40
2518 2583 6.495181 CAGATATGGGTAAGAGGATGTACAGT 59.505 42.308 0.33 0.00 0.00 3.55
2519 2584 6.071108 CCAGATATGGGTAAGAGGATGTACAG 60.071 46.154 0.33 0.00 0.00 2.74
2531 2596 3.393687 AGACAAGGCCAGATATGGGTAA 58.606 45.455 8.78 0.00 0.00 2.85
2532 2597 3.060479 AGACAAGGCCAGATATGGGTA 57.940 47.619 8.78 0.00 0.00 3.69
2533 2598 1.898863 AGACAAGGCCAGATATGGGT 58.101 50.000 8.78 0.00 0.00 4.51
2534 2599 5.762179 TTATAGACAAGGCCAGATATGGG 57.238 43.478 8.78 0.00 0.00 4.00
2535 2600 7.397221 TCATTTATAGACAAGGCCAGATATGG 58.603 38.462 5.01 0.69 0.00 2.74
2536 2601 8.099537 ACTCATTTATAGACAAGGCCAGATATG 58.900 37.037 5.01 0.00 0.00 1.78
2537 2602 8.212259 ACTCATTTATAGACAAGGCCAGATAT 57.788 34.615 5.01 4.48 0.00 1.63
2538 2603 7.510685 AGACTCATTTATAGACAAGGCCAGATA 59.489 37.037 5.01 0.00 0.00 1.98
2539 2604 6.328672 AGACTCATTTATAGACAAGGCCAGAT 59.671 38.462 5.01 0.00 0.00 2.90
2540 2605 5.663106 AGACTCATTTATAGACAAGGCCAGA 59.337 40.000 5.01 0.00 0.00 3.86
2541 2606 5.757320 CAGACTCATTTATAGACAAGGCCAG 59.243 44.000 5.01 0.00 0.00 4.85
2542 2607 5.189736 ACAGACTCATTTATAGACAAGGCCA 59.810 40.000 5.01 0.00 0.00 5.36
2543 2608 5.675538 ACAGACTCATTTATAGACAAGGCC 58.324 41.667 0.00 0.00 0.00 5.19
2544 2609 7.493367 ACTACAGACTCATTTATAGACAAGGC 58.507 38.462 0.00 0.00 0.00 4.35
2545 2610 9.522804 GAACTACAGACTCATTTATAGACAAGG 57.477 37.037 0.00 0.00 0.00 3.61
2546 2611 9.522804 GGAACTACAGACTCATTTATAGACAAG 57.477 37.037 0.00 0.00 0.00 3.16
2547 2612 8.475639 GGGAACTACAGACTCATTTATAGACAA 58.524 37.037 0.00 0.00 0.00 3.18
2548 2613 7.069578 GGGGAACTACAGACTCATTTATAGACA 59.930 40.741 0.00 0.00 0.00 3.41
2549 2614 7.435305 GGGGAACTACAGACTCATTTATAGAC 58.565 42.308 0.00 0.00 0.00 2.59
2550 2615 6.553852 GGGGGAACTACAGACTCATTTATAGA 59.446 42.308 0.00 0.00 0.00 1.98
2551 2616 6.516860 CGGGGGAACTACAGACTCATTTATAG 60.517 46.154 0.00 0.00 0.00 1.31
2562 2627 0.543410 TTCTGCGGGGGAACTACAGA 60.543 55.000 0.00 0.00 35.67 3.41
2575 2640 2.032550 CAGCATCCACCTATTTTCTGCG 59.967 50.000 0.00 0.00 33.54 5.18
2587 2652 3.526931 TGCTTACTCTACAGCATCCAC 57.473 47.619 0.00 0.00 41.20 4.02
2589 2654 4.130286 AGTTGCTTACTCTACAGCATCC 57.870 45.455 0.00 0.00 45.41 3.51
2592 2657 5.661056 ATGTAGTTGCTTACTCTACAGCA 57.339 39.130 9.49 0.00 44.25 4.41
2608 2673 9.751542 GCAAGTATATGTACTGAAGAATGTAGT 57.248 33.333 2.55 0.00 40.24 2.73
2624 2689 2.030540 GCAGGGCATGTGCAAGTATATG 60.031 50.000 7.36 0.00 44.36 1.78
2633 2698 2.185867 CATTGGCAGGGCATGTGC 59.814 61.111 0.00 0.00 40.42 4.57
2638 2703 1.380246 CCTTAGCATTGGCAGGGCA 60.380 57.895 13.74 0.00 44.61 5.36
2639 2704 1.380380 ACCTTAGCATTGGCAGGGC 60.380 57.895 4.49 4.49 44.61 5.19
2640 2705 0.323725 ACACCTTAGCATTGGCAGGG 60.324 55.000 0.00 0.00 44.61 4.45
2669 2734 2.548875 GAATGACTAGCACTGGAGCTG 58.451 52.381 0.00 1.27 46.11 4.24
2674 2739 1.204704 TGACGGAATGACTAGCACTGG 59.795 52.381 0.00 0.00 0.00 4.00
2684 2749 1.204704 ACGCAGATTCTGACGGAATGA 59.795 47.619 24.15 0.00 43.90 2.57
2689 2754 0.924090 GCTTACGCAGATTCTGACGG 59.076 55.000 24.15 13.60 36.14 4.79
2741 2822 8.672823 AGGATAACCGGTAACTAAATCATTTC 57.327 34.615 8.00 0.00 41.83 2.17
2756 2837 2.631160 TGTATGGCAAGGATAACCGG 57.369 50.000 0.00 0.00 41.83 5.28
2757 2838 2.226437 GCATGTATGGCAAGGATAACCG 59.774 50.000 0.00 0.00 41.83 4.44
2767 2848 2.547299 TCGATGATGCATGTATGGCA 57.453 45.000 2.46 0.00 46.66 4.92
2768 2849 2.353889 GGATCGATGATGCATGTATGGC 59.646 50.000 2.46 0.00 30.72 4.40
2769 2850 3.602483 TGGATCGATGATGCATGTATGG 58.398 45.455 2.46 0.00 35.57 2.74
2807 2888 8.576442 ACGGAGAATTGAACATCTAAAACAAAT 58.424 29.630 0.00 0.00 0.00 2.32
2809 2890 7.504924 ACGGAGAATTGAACATCTAAAACAA 57.495 32.000 0.00 0.00 0.00 2.83
2810 2891 7.504924 AACGGAGAATTGAACATCTAAAACA 57.495 32.000 0.00 0.00 0.00 2.83
2829 2910 4.697828 TGCTACAAAATCTGCATTAACGGA 59.302 37.500 0.00 0.00 0.00 4.69
2883 2964 8.839310 ATCATATAGTTCCAACAAGCTGATAC 57.161 34.615 0.00 0.00 0.00 2.24
2886 2967 9.851686 ATTAATCATATAGTTCCAACAAGCTGA 57.148 29.630 0.00 0.00 0.00 4.26
2927 3008 8.041323 ACTACATGGGTGAATTAGTTTCTACAG 58.959 37.037 0.00 0.00 35.23 2.74
2928 3009 7.913789 ACTACATGGGTGAATTAGTTTCTACA 58.086 34.615 0.00 0.00 35.23 2.74
2929 3010 9.530633 CTACTACATGGGTGAATTAGTTTCTAC 57.469 37.037 0.00 0.00 35.23 2.59
2930 3011 9.483489 TCTACTACATGGGTGAATTAGTTTCTA 57.517 33.333 0.00 0.00 35.23 2.10
2931 3012 8.375493 TCTACTACATGGGTGAATTAGTTTCT 57.625 34.615 0.00 0.00 35.23 2.52
2955 3036 7.807977 ACCAGTTCACATCCATATTATGTTC 57.192 36.000 3.10 0.00 35.39 3.18
2975 3061 4.441634 CCGACTACAGGAATAGGAAACCAG 60.442 50.000 0.00 0.00 0.00 4.00
2997 3085 0.252197 CAGTACCCCTGCCACTAACC 59.748 60.000 0.00 0.00 33.59 2.85
3009 3097 1.746517 CGGGTCTATGGCAGTACCC 59.253 63.158 19.65 19.65 46.85 3.69
3018 3106 3.700038 ACTTCAGTAGTTCCGGGTCTATG 59.300 47.826 0.00 5.93 31.29 2.23
3025 3113 4.430908 GAATGGTACTTCAGTAGTTCCGG 58.569 47.826 0.00 0.00 44.85 5.14
3026 3114 4.081862 TGGAATGGTACTTCAGTAGTTCCG 60.082 45.833 14.79 0.00 44.85 4.30
3027 3115 5.046520 ACTGGAATGGTACTTCAGTAGTTCC 60.047 44.000 13.76 13.76 42.87 3.62
3041 3129 6.379133 TCAGTACTATCGTAAACTGGAATGGT 59.621 38.462 0.00 0.00 0.00 3.55
3042 3130 6.802608 TCAGTACTATCGTAAACTGGAATGG 58.197 40.000 0.00 0.00 0.00 3.16
3043 3131 7.432545 CACTCAGTACTATCGTAAACTGGAATG 59.567 40.741 0.00 0.00 0.00 2.67
3064 3152 7.676004 TGTAAGACCATGAAGATAAACACTCA 58.324 34.615 0.00 0.00 0.00 3.41
3067 3155 8.324163 ACTTGTAAGACCATGAAGATAAACAC 57.676 34.615 0.00 0.00 0.00 3.32
3105 3193 7.040686 GCCTAAACTGGAACACTTCAGAAATTA 60.041 37.037 0.00 0.00 35.20 1.40
3121 3209 2.948979 TGTTTCACACAGCCTAAACTGG 59.051 45.455 0.00 0.00 42.21 4.00
3124 3212 6.640907 CCTATTTTGTTTCACACAGCCTAAAC 59.359 38.462 0.00 0.00 36.48 2.01
3159 3247 8.630917 GTCATATACAGTTGAAACTCCTAGCTA 58.369 37.037 0.00 0.00 37.08 3.32
3208 3331 7.610580 ATTCCTTCATTGGTTGTTTTAGGAA 57.389 32.000 0.00 0.00 42.72 3.36
3209 3332 7.610580 AATTCCTTCATTGGTTGTTTTAGGA 57.389 32.000 0.00 0.00 0.00 2.94
3223 3346 9.525826 AAGTTCAGTCAGATAAAATTCCTTCAT 57.474 29.630 0.00 0.00 0.00 2.57
3226 3349 7.449704 AGCAAGTTCAGTCAGATAAAATTCCTT 59.550 33.333 0.00 0.00 0.00 3.36
3228 3351 7.150783 AGCAAGTTCAGTCAGATAAAATTCC 57.849 36.000 0.00 0.00 0.00 3.01
3235 3358 4.223700 ACATGGAGCAAGTTCAGTCAGATA 59.776 41.667 0.00 0.00 0.00 1.98
3238 3361 2.775890 ACATGGAGCAAGTTCAGTCAG 58.224 47.619 0.00 0.00 0.00 3.51
3282 3405 9.791820 CAATTCTGAAATATGCATACAGTGAAA 57.208 29.630 8.99 3.68 0.00 2.69
3316 3439 3.793797 TTTTGCCATGATGCAGAGATG 57.206 42.857 0.00 0.00 43.21 2.90
3337 3461 1.836802 GTCCAGAGAAGCAGAATCCCT 59.163 52.381 0.00 0.00 0.00 4.20
3345 3469 9.851686 AAATATAACATTATGTCCAGAGAAGCA 57.148 29.630 0.00 0.00 0.00 3.91
3368 3492 9.142014 ACTATGCTACAGTGAAGAGATAGAAAT 57.858 33.333 0.00 0.00 0.00 2.17
3371 3495 7.057264 ACACTATGCTACAGTGAAGAGATAGA 58.943 38.462 16.44 0.00 45.10 1.98
3373 3497 8.926092 ATACACTATGCTACAGTGAAGAGATA 57.074 34.615 16.44 2.21 45.10 1.98
3374 3498 7.723616 AGATACACTATGCTACAGTGAAGAGAT 59.276 37.037 16.44 5.11 45.10 2.75
3375 3499 7.057264 AGATACACTATGCTACAGTGAAGAGA 58.943 38.462 16.44 1.62 45.10 3.10
3376 3500 7.270757 AGATACACTATGCTACAGTGAAGAG 57.729 40.000 16.44 0.00 45.10 2.85
3378 3502 7.229707 AGGTAGATACACTATGCTACAGTGAAG 59.770 40.741 16.44 0.00 45.10 3.02
3379 3503 7.013369 CAGGTAGATACACTATGCTACAGTGAA 59.987 40.741 16.44 0.00 45.10 3.18
3380 3504 6.486993 CAGGTAGATACACTATGCTACAGTGA 59.513 42.308 16.44 4.58 45.10 3.41
3381 3505 8.866954 AGCAGGTAGATACACTATGCTACAGTG 61.867 44.444 10.21 10.21 42.22 3.66
3382 3506 5.241949 GCAGGTAGATACACTATGCTACAGT 59.758 44.000 0.00 0.00 35.46 3.55
3383 3507 5.475220 AGCAGGTAGATACACTATGCTACAG 59.525 44.000 0.00 0.00 42.22 2.74
3384 3508 5.386060 AGCAGGTAGATACACTATGCTACA 58.614 41.667 0.00 0.00 42.22 2.74
3388 3526 5.221342 ACAGAAGCAGGTAGATACACTATGC 60.221 44.000 0.00 0.00 37.36 3.14
3394 3532 6.154534 ACATAACACAGAAGCAGGTAGATACA 59.845 38.462 0.00 0.00 0.00 2.29
3396 3534 6.791867 ACATAACACAGAAGCAGGTAGATA 57.208 37.500 0.00 0.00 0.00 1.98
3490 3632 5.559148 ACCATGCAAACCCTTTTTATTGA 57.441 34.783 0.00 0.00 0.00 2.57
3494 3636 6.096282 GCTAGATACCATGCAAACCCTTTTTA 59.904 38.462 0.00 0.00 0.00 1.52
3515 3658 4.111375 ACGATTAACTCACCACAGCTAG 57.889 45.455 0.00 0.00 0.00 3.42
3517 3660 4.495422 CTTACGATTAACTCACCACAGCT 58.505 43.478 0.00 0.00 0.00 4.24
3518 3661 3.617263 CCTTACGATTAACTCACCACAGC 59.383 47.826 0.00 0.00 0.00 4.40
3519 3662 4.181578 CCCTTACGATTAACTCACCACAG 58.818 47.826 0.00 0.00 0.00 3.66
3520 3663 3.618019 GCCCTTACGATTAACTCACCACA 60.618 47.826 0.00 0.00 0.00 4.17
3521 3664 2.934553 GCCCTTACGATTAACTCACCAC 59.065 50.000 0.00 0.00 0.00 4.16
3524 3667 3.858247 ACAGCCCTTACGATTAACTCAC 58.142 45.455 0.00 0.00 0.00 3.51
3525 3668 4.546829 AACAGCCCTTACGATTAACTCA 57.453 40.909 0.00 0.00 0.00 3.41
3526 3669 5.642491 AGAAAACAGCCCTTACGATTAACTC 59.358 40.000 0.00 0.00 0.00 3.01
3529 3672 6.887626 AAAGAAAACAGCCCTTACGATTAA 57.112 33.333 0.00 0.00 0.00 1.40
3531 3674 5.508994 CCAAAAGAAAACAGCCCTTACGATT 60.509 40.000 0.00 0.00 0.00 3.34
3532 3675 4.022329 CCAAAAGAAAACAGCCCTTACGAT 60.022 41.667 0.00 0.00 0.00 3.73
3533 3676 3.316868 CCAAAAGAAAACAGCCCTTACGA 59.683 43.478 0.00 0.00 0.00 3.43
3534 3677 3.552068 CCCAAAAGAAAACAGCCCTTACG 60.552 47.826 0.00 0.00 0.00 3.18
3535 3678 3.639561 TCCCAAAAGAAAACAGCCCTTAC 59.360 43.478 0.00 0.00 0.00 2.34
3536 3679 3.917300 TCCCAAAAGAAAACAGCCCTTA 58.083 40.909 0.00 0.00 0.00 2.69
3537 3680 2.758130 TCCCAAAAGAAAACAGCCCTT 58.242 42.857 0.00 0.00 0.00 3.95
3538 3681 2.470057 TCCCAAAAGAAAACAGCCCT 57.530 45.000 0.00 0.00 0.00 5.19
3539 3682 2.806745 GCTTCCCAAAAGAAAACAGCCC 60.807 50.000 0.00 0.00 0.00 5.19
3540 3683 2.158971 TGCTTCCCAAAAGAAAACAGCC 60.159 45.455 0.00 0.00 0.00 4.85
3541 3684 3.177997 TGCTTCCCAAAAGAAAACAGC 57.822 42.857 0.00 0.00 0.00 4.40
3542 3685 3.871006 GGTTGCTTCCCAAAAGAAAACAG 59.129 43.478 0.00 0.00 34.68 3.16
3554 3706 5.230182 CAGAATTAACTTTGGTTGCTTCCC 58.770 41.667 0.00 0.00 36.92 3.97
3624 3776 9.097257 CATTCAATTTATCGTTTGGCCTAAATT 57.903 29.630 3.32 8.24 35.32 1.82
3625 3777 7.224557 GCATTCAATTTATCGTTTGGCCTAAAT 59.775 33.333 3.32 1.69 0.00 1.40
3626 3778 6.533367 GCATTCAATTTATCGTTTGGCCTAAA 59.467 34.615 3.32 0.00 0.00 1.85
3627 3779 6.039616 GCATTCAATTTATCGTTTGGCCTAA 58.960 36.000 3.32 0.00 0.00 2.69
3628 3780 5.359576 AGCATTCAATTTATCGTTTGGCCTA 59.640 36.000 3.32 0.00 0.00 3.93
3629 3781 4.160252 AGCATTCAATTTATCGTTTGGCCT 59.840 37.500 3.32 0.00 0.00 5.19
3630 3782 4.432712 AGCATTCAATTTATCGTTTGGCC 58.567 39.130 0.00 0.00 0.00 5.36
3631 3783 7.698836 ATAAGCATTCAATTTATCGTTTGGC 57.301 32.000 0.00 0.00 0.00 4.52
3641 3793 8.284693 GCACTCACAAAAATAAGCATTCAATTT 58.715 29.630 0.00 0.00 0.00 1.82
3642 3794 7.658575 AGCACTCACAAAAATAAGCATTCAATT 59.341 29.630 0.00 0.00 0.00 2.32
3643 3795 7.117236 CAGCACTCACAAAAATAAGCATTCAAT 59.883 33.333 0.00 0.00 0.00 2.57
3644 3796 6.421501 CAGCACTCACAAAAATAAGCATTCAA 59.578 34.615 0.00 0.00 0.00 2.69
3645 3797 5.921976 CAGCACTCACAAAAATAAGCATTCA 59.078 36.000 0.00 0.00 0.00 2.57
3646 3798 5.346822 CCAGCACTCACAAAAATAAGCATTC 59.653 40.000 0.00 0.00 0.00 2.67
3647 3799 5.010922 TCCAGCACTCACAAAAATAAGCATT 59.989 36.000 0.00 0.00 0.00 3.56
3648 3800 4.523943 TCCAGCACTCACAAAAATAAGCAT 59.476 37.500 0.00 0.00 0.00 3.79
3649 3801 3.888323 TCCAGCACTCACAAAAATAAGCA 59.112 39.130 0.00 0.00 0.00 3.91
3650 3802 4.503741 TCCAGCACTCACAAAAATAAGC 57.496 40.909 0.00 0.00 0.00 3.09
3651 3803 5.106555 ACGATCCAGCACTCACAAAAATAAG 60.107 40.000 0.00 0.00 0.00 1.73
3652 3804 4.759693 ACGATCCAGCACTCACAAAAATAA 59.240 37.500 0.00 0.00 0.00 1.40
3653 3805 4.154015 CACGATCCAGCACTCACAAAAATA 59.846 41.667 0.00 0.00 0.00 1.40
3654 3806 3.058016 CACGATCCAGCACTCACAAAAAT 60.058 43.478 0.00 0.00 0.00 1.82
3655 3807 2.290367 CACGATCCAGCACTCACAAAAA 59.710 45.455 0.00 0.00 0.00 1.94
3656 3808 1.872952 CACGATCCAGCACTCACAAAA 59.127 47.619 0.00 0.00 0.00 2.44
3657 3809 1.202639 ACACGATCCAGCACTCACAAA 60.203 47.619 0.00 0.00 0.00 2.83
3658 3810 0.392706 ACACGATCCAGCACTCACAA 59.607 50.000 0.00 0.00 0.00 3.33
3659 3811 1.067846 GTACACGATCCAGCACTCACA 60.068 52.381 0.00 0.00 0.00 3.58
3660 3812 1.202582 AGTACACGATCCAGCACTCAC 59.797 52.381 0.00 0.00 0.00 3.51
3661 3813 1.472878 GAGTACACGATCCAGCACTCA 59.527 52.381 0.00 0.00 34.06 3.41
3662 3814 1.746220 AGAGTACACGATCCAGCACTC 59.254 52.381 0.00 4.88 34.07 3.51
3663 3815 1.474478 CAGAGTACACGATCCAGCACT 59.526 52.381 0.00 0.00 0.00 4.40
3664 3816 1.472878 TCAGAGTACACGATCCAGCAC 59.527 52.381 0.00 0.00 0.00 4.40
3665 3817 1.472878 GTCAGAGTACACGATCCAGCA 59.527 52.381 0.00 0.00 0.00 4.41
3666 3818 1.746220 AGTCAGAGTACACGATCCAGC 59.254 52.381 0.00 0.00 0.00 4.85
3667 3819 5.759506 ATTAGTCAGAGTACACGATCCAG 57.240 43.478 0.00 0.00 0.00 3.86
3668 3820 7.052248 TCTAATTAGTCAGAGTACACGATCCA 58.948 38.462 12.19 0.00 0.00 3.41
3669 3821 7.493743 TCTAATTAGTCAGAGTACACGATCC 57.506 40.000 12.19 0.00 0.00 3.36
3670 3822 9.388346 CATTCTAATTAGTCAGAGTACACGATC 57.612 37.037 12.19 0.00 0.00 3.69
3671 3823 7.863375 GCATTCTAATTAGTCAGAGTACACGAT 59.137 37.037 12.19 0.00 0.00 3.73
3672 3824 7.067129 AGCATTCTAATTAGTCAGAGTACACGA 59.933 37.037 12.19 0.00 0.00 4.35
3673 3825 7.197017 AGCATTCTAATTAGTCAGAGTACACG 58.803 38.462 12.19 0.00 0.00 4.49
3705 3857 8.960591 CACTAGGAATACCTTCAATGTTGAAAT 58.039 33.333 9.24 4.05 45.61 2.17
3722 3874 1.115467 CTGCCGGTCTCACTAGGAAT 58.885 55.000 1.90 0.00 0.00 3.01
3728 3880 2.524394 ACCACTGCCGGTCTCACT 60.524 61.111 1.90 0.00 32.11 3.41
3731 3883 2.357517 CACACCACTGCCGGTCTC 60.358 66.667 1.90 0.00 37.07 3.36
3738 3890 1.868997 CCGTCATTCACACCACTGC 59.131 57.895 0.00 0.00 0.00 4.40
3743 3895 0.387239 GCAAAGCCGTCATTCACACC 60.387 55.000 0.00 0.00 0.00 4.16
3745 3897 1.266718 GAAGCAAAGCCGTCATTCACA 59.733 47.619 0.00 0.00 0.00 3.58
3751 3903 1.165907 CCACAGAAGCAAAGCCGTCA 61.166 55.000 0.00 0.00 0.00 4.35
3754 3906 1.799258 AAGCCACAGAAGCAAAGCCG 61.799 55.000 0.00 0.00 0.00 5.52
3759 3911 4.005650 CTCATTAGAAGCCACAGAAGCAA 58.994 43.478 0.00 0.00 0.00 3.91
3777 3929 0.399091 TCAATCTCGGCCCCTCTCAT 60.399 55.000 0.00 0.00 0.00 2.90
3832 3984 2.684927 GCAGAGGCAATGTGGATAACCT 60.685 50.000 0.00 0.00 40.72 3.50
3868 4020 2.905415 ATGGAAGACAGCCCATTTCA 57.095 45.000 0.00 0.00 40.03 2.69
3916 4070 5.063564 GGACATAACTGTTACAAGCTGTAGC 59.936 44.000 1.73 0.00 37.19 3.58
3970 4157 2.839486 TGTGCTACTTCCAGTTCCAG 57.161 50.000 0.00 0.00 0.00 3.86
3971 4158 2.637382 TGATGTGCTACTTCCAGTTCCA 59.363 45.455 0.00 0.00 0.00 3.53
3972 4159 3.334583 TGATGTGCTACTTCCAGTTCC 57.665 47.619 0.00 0.00 0.00 3.62
3973 4160 4.319177 ACTTGATGTGCTACTTCCAGTTC 58.681 43.478 0.00 0.00 28.29 3.01
3974 4161 4.357918 ACTTGATGTGCTACTTCCAGTT 57.642 40.909 0.00 0.00 28.29 3.16
3975 4162 4.357918 AACTTGATGTGCTACTTCCAGT 57.642 40.909 0.00 0.00 32.22 4.00
4023 4210 1.490574 GCTGGTCATCACCTAGGAGT 58.509 55.000 17.98 0.00 44.17 3.85
4035 4222 3.113514 TTGACGCCAAGGCTGGTCA 62.114 57.895 15.03 15.03 45.53 4.02
4109 4309 1.143684 ACCTGAAGTGCCAACAGACAT 59.856 47.619 0.00 0.00 34.07 3.06
4144 4344 1.604604 TGCAAGCAAGTGAGTAACCC 58.395 50.000 0.00 0.00 0.00 4.11
4208 4408 6.127647 CCAAGGAAAGCATAAGCAGTTGATAA 60.128 38.462 0.00 0.00 45.49 1.75
4261 4461 4.290711 TGGAATCTGATGAAGCACAAGA 57.709 40.909 0.00 0.00 0.00 3.02
4262 4462 5.048224 ACTTTGGAATCTGATGAAGCACAAG 60.048 40.000 0.00 0.00 0.00 3.16
4301 4501 0.608640 TGAGAGGAAAAGGCTCGGTC 59.391 55.000 0.00 0.00 0.00 4.79
4304 4504 2.393271 ATGTGAGAGGAAAAGGCTCG 57.607 50.000 0.00 0.00 0.00 5.03
4307 4507 3.760684 ACATCAATGTGAGAGGAAAAGGC 59.239 43.478 0.00 0.00 40.03 4.35
4311 4511 7.331026 CCTAGTTACATCAATGTGAGAGGAAA 58.669 38.462 5.89 0.00 41.89 3.13
4318 4518 7.182817 AGTTAGCCTAGTTACATCAATGTGA 57.817 36.000 5.89 0.00 41.89 3.58
4694 4894 0.032130 TTGCAGTGTCAGTCGACCTC 59.968 55.000 13.01 3.59 41.85 3.85
4728 4928 2.707849 GGATTGCAGCAGCTGGTGG 61.708 63.158 38.56 24.18 43.24 4.61
4729 4929 1.934220 CTGGATTGCAGCAGCTGGTG 61.934 60.000 35.68 35.68 45.58 4.17
4730 4930 1.677966 CTGGATTGCAGCAGCTGGT 60.678 57.895 24.13 13.85 42.74 4.00
4731 4931 0.752009 ATCTGGATTGCAGCAGCTGG 60.752 55.000 24.13 5.41 42.74 4.85
4732 4932 0.382158 CATCTGGATTGCAGCAGCTG 59.618 55.000 18.93 18.93 42.74 4.24
4733 4933 1.384989 GCATCTGGATTGCAGCAGCT 61.385 55.000 1.76 0.00 42.74 4.24
4734 4934 1.065928 GCATCTGGATTGCAGCAGC 59.934 57.895 0.00 3.37 42.57 5.25
4735 4935 1.355563 CGCATCTGGATTGCAGCAG 59.644 57.895 0.00 0.00 0.00 4.24
4736 4936 1.377594 ACGCATCTGGATTGCAGCA 60.378 52.632 0.00 0.00 0.00 4.41
4737 4937 1.063649 CACGCATCTGGATTGCAGC 59.936 57.895 0.00 0.00 0.00 5.25
4738 4938 1.002792 CATCACGCATCTGGATTGCAG 60.003 52.381 0.00 0.00 0.00 4.41
4739 4939 1.018910 CATCACGCATCTGGATTGCA 58.981 50.000 0.00 0.00 0.00 4.08
4740 4940 1.019673 ACATCACGCATCTGGATTGC 58.980 50.000 0.00 0.00 0.00 3.56
4741 4941 2.793585 GCAACATCACGCATCTGGATTG 60.794 50.000 0.00 0.00 0.00 2.67
4742 4942 1.402968 GCAACATCACGCATCTGGATT 59.597 47.619 0.00 0.00 0.00 3.01
4743 4943 1.019673 GCAACATCACGCATCTGGAT 58.980 50.000 0.00 0.00 0.00 3.41
4744 4944 1.360931 CGCAACATCACGCATCTGGA 61.361 55.000 0.00 0.00 0.00 3.86
4745 4945 1.061411 CGCAACATCACGCATCTGG 59.939 57.895 0.00 0.00 0.00 3.86
4746 4946 0.025898 CTCGCAACATCACGCATCTG 59.974 55.000 0.00 0.00 0.00 2.90
4747 4947 1.086067 CCTCGCAACATCACGCATCT 61.086 55.000 0.00 0.00 0.00 2.90
4748 4948 1.349627 CCTCGCAACATCACGCATC 59.650 57.895 0.00 0.00 0.00 3.91
4749 4949 0.955428 AACCTCGCAACATCACGCAT 60.955 50.000 0.00 0.00 0.00 4.73
4750 4950 1.596752 AACCTCGCAACATCACGCA 60.597 52.632 0.00 0.00 0.00 5.24
4751 4951 1.154413 CAACCTCGCAACATCACGC 60.154 57.895 0.00 0.00 0.00 5.34
4752 4952 0.163788 GTCAACCTCGCAACATCACG 59.836 55.000 0.00 0.00 0.00 4.35
4753 4953 0.163788 CGTCAACCTCGCAACATCAC 59.836 55.000 0.00 0.00 0.00 3.06
4754 4954 0.948623 CCGTCAACCTCGCAACATCA 60.949 55.000 0.00 0.00 0.00 3.07
4755 4955 0.949105 ACCGTCAACCTCGCAACATC 60.949 55.000 0.00 0.00 0.00 3.06
4756 4956 0.949105 GACCGTCAACCTCGCAACAT 60.949 55.000 0.00 0.00 0.00 2.71
4757 4957 1.593209 GACCGTCAACCTCGCAACA 60.593 57.895 0.00 0.00 0.00 3.33
4758 4958 2.654912 CGACCGTCAACCTCGCAAC 61.655 63.158 0.00 0.00 0.00 4.17
4759 4959 2.355363 CGACCGTCAACCTCGCAA 60.355 61.111 0.00 0.00 0.00 4.85
4762 4962 2.805353 CAGCGACCGTCAACCTCG 60.805 66.667 0.00 0.00 0.00 4.63
4763 4963 2.209064 TAGCAGCGACCGTCAACCTC 62.209 60.000 0.00 0.00 0.00 3.85
4764 4964 2.273179 TAGCAGCGACCGTCAACCT 61.273 57.895 0.00 0.00 0.00 3.50
4765 4965 2.092882 GTAGCAGCGACCGTCAACC 61.093 63.158 0.00 0.00 0.00 3.77
4766 4966 0.942410 TTGTAGCAGCGACCGTCAAC 60.942 55.000 2.88 0.00 0.00 3.18
4767 4967 0.666274 CTTGTAGCAGCGACCGTCAA 60.666 55.000 2.88 0.00 0.00 3.18
4768 4968 1.080772 CTTGTAGCAGCGACCGTCA 60.081 57.895 2.88 0.00 0.00 4.35
4769 4969 2.445438 GCTTGTAGCAGCGACCGTC 61.445 63.158 2.88 0.00 41.89 4.79
4770 4970 2.432628 GCTTGTAGCAGCGACCGT 60.433 61.111 2.88 0.00 41.89 4.83
4776 4976 3.188786 CGTCCCGCTTGTAGCAGC 61.189 66.667 0.00 0.00 42.58 5.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.