>input_sequence_27761
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------------------------ATGGCGTCGTCGTCGCCGCCGTCGTGGATCATCCTGGGCAGCGTGGCGCGGGTGTC
CGGCACGGACGCCGCGGCCGAGGACATCCCGCCGGGCGCCGACCTCGCGCTCGCCCTCGCCGCGCCGCCGCGCGTCACCC
TGCTCACCGTGCCCCTGCGCGTCTCGCCCGGCCCGGACGAGTACCCCATGGTCCTCGCCGTCGACCCCTCCGGCCTCCTC
CTCCTCTCCACGCCCCCGGCCCCGAGGCCTCGCCCGTTGCCGCCCTCCAGACCCGACGCCGACGGCTTCGTCACGCTCAA
CATCACCGACCGCAAGCCCCCGGGCTACTACGTCTGCGACGCCTCCTCCTCCTCCGCCGCCCGCCTCCCCGGCAACGGGC
GCAGTTTCCTCGACGCCCGCTCCGTCGGCCTCCTCGCGTCCCCGGCGGGCGGCGGCCACTACATGGTCGTCGAGCTCCAG
CCGCTCATCGGCAGCGACGAGGCCACGCTGCTCTGCTTCTCGTCCGTGACGGGGTGGTGGAAGGAGAAGGACGTGTTCTA
CCCCGTGCGCTACGGGATCTGGAACACCGACGCCGCGATCACCAACGCCGGGAAGCTCTGCTGGGTGGACCTCTCCTCCG
GCATCCTCTCCTGCGACCCGTTCGCCAAGAAGCCGGTCCTGGACTTCGTCGAGCTCCCGGAGGGCAGGCTGCGGCAGAAT
ATCCACTGCCTCCACTGCGCCGGGAGAGAGCTGAGCACGCGCCGCTGCGTGCAGGTCAGCGCTGGCATGTTCCGCCTGGT
GGAGCTAACCTGCGGCGACCACAGCTCTCGGCCCAGGGGCGTCGTGCTCGCCTCTTGGATGAGGCTCCAGCAGGCGCAGT
CCCGGAGCCACCGCAAGGCACCTCGGGTGGTCATGTGGACGCTGGCCGATCAGGACACCGGGGAGTGGAAGGTGGAGCAC
AGGGTGAACTTGGCGGACGTCTGGGCGGATGGGAGCTACAAGGCCACCGGGCTGCCCAAGAAAACACCTGTGCTCGCGCT
CGTCCACCCCAAGAACCCAGATGTGGTGTACTTCTTCCTGGGCAAGCACCTCTTGGGCGTCAACCTGCGCACGAGGAAGG
TGGTGGAGTGTGAGGTCTACGAGCTGGTCGGACCGAGCAGGAAACATGTCTCCTCCCGCTGCGTTCACCCATGGGAGCTG
CCGGCAACGCTTTGTGTAGGTAATCAACAATAATCCACATCGTCTCATCTGTGCTGTTGCTTTGATGCTGTTGATATGAG
GTTCAGAACAATTGAGAAAGACTCTCCTTTTCACGCTGATACGCCTTCTAATGTGCTGATCGTGTATGCTGGACGTGATT
ATACCTCAAATATGTGGTTTTGGTAGCTATAGGACCCTATAATGATCTGATCCTGATTCGTGTTTGGACTCTGAGATAGT
TTACTCTGTCCATATTTGCTGGTTGTAACTGTGATCACACATATTACCGTCTCCTGCAAATTTTATGGGAGTGAAAAAAA
TTCTGTCTTAATCGATAATTAAACTGTACATCCTCTTACCCATATCTGGCCTTGTCTATAAATGAGTCTGTAGTTCCCCC
GCAGAAAATAGGTGGATGCTGTAGAGTAAGCAACTACATTCTTCAGTACATATACTTGCACATGCCCTGCCAATGCTAAG
GTGTCAATTAGCACAGCTCCAGTGCTAGTCATTCCGTCAGAATCTGCGTAAGCATGTATTTCATTATCATTTTGA-----
-----------AAATGCATTGGAAATGATTTAGTTACCGGTTATCCTTGCCATACATGCATCATCGATCCATCTTTTTAT
ATCTAATATTTGTTTTAGATGTTCAATTCTCCGTTAATGCAGATTTTGTAGCATTCATTGTAGACAACAACTTGTGTGCA
GTTGTATCAGCTTGTTGGAACTATATGATTAATAAGGTTCTACTATACTGTAGAAACTAATTCACCCATGTAGTAGAACA
-----TAATATGGATGTGAACTGGTTT--CCTATTCCTGTAGTCGGTTAGTGGCAGGGGTACTGCCATAGACCCGGAACT
ACTGAAGTACCATTCCAGTTTACGATAGTACTGAGTGTTTATCTTCATGGTCTTACAAGTATGTTTCTAAATTAATTTCT
GAAGTGTTCCAGTTTAGGCTGTGTGAAACAAAATAGGCTAATCTTATAGCTAGGAGTTTCAACTGTATATGACCTCTATA
GACTTAATA-----------------------------------AAAGTTTTCCTAAAACAACCAATGAAGGAATTTTAT
CTGACTGAACTTGCTCCATGTTCCTGAGGATGCTCTCAGTTATCTTTCACTGTATGCATATTTCAGAATTGGAAATGCCA
TCTCTGCAT-CATGGCAAAAAGGGATTCTGCTTCTCTGGACATAATGTTATATTTCTATCTCTTCACTG-----------
---TAGCATAGTGTATCTACCTGCTTCTGTGTTATGTTGTTATGTAATTTCGAATGACAAGAGTAAGGTAGATACTCTAT
CAATTTGTATA----GTAGTATCTTTCAACATCAATAAAA-AGGGTTTGCATGGTATCTAGCTGTGGTGAGTTAATCGTA
AGGGC---------TGTTTTCTTTTGGGAAGCAACCAAAGTTAATTCTGCACCACCTTAATTTTTGTTTCACTTCAATTA
ACATTCTTTAATCCAAATTTAGGCCAAACGATAAATTGAATGCTTATTTTTGTGAGTGCTGGATCGTGTACTCTGACTAA
TTAGAATGCTATTCTTATTTCAACATTGAAGGTATTCCTAGTGAGACCGGCAGTGGTGTGAATGACGGCTTTGCTTCTGT
GGCTTCTAATGAGAGGGGCCGAGATTGA----------------------------------------------------
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>chr3D_1_TraesCS3D01G164100
GGGTGTTTGCAAAAGCTGATATAACTTGTCCTGTTCA-GGAGATTAACAAGCTATTCAGAAATATCATTAGCTTAGTAGT
ATTTCTTTTGTTAGGCAAGAGGCCCATATGATCGCTCACCTAAGTGCCAAACAGGCTAGTGAGGTTCGTTGGAGGTGTCT
GTGGATCAACTATGTTTAAGAATTTCTTCATGGTTGTATTACCCGCGAATGTATTTCATGTGAGTAATCAATAAAGCTGC
TAAATTAGAAAGAAAGTAAAAGGTATTGCGATGCGTATATTGACATGCCAAACCGCGCGCGTTCCACACACAGATTTGTA
GCTTGACTTTAAACCCGGGCAAACGTCGGGCTGGGCTTGTAAAAGCCTGACCGTCATTTCTTAAGCTGAGCTCAGCCTAA
AATTAAGCGGGAAGCCCGAAATACTCTCTGTTTTCAAGCCCGAGCCCAGCCCGAAATTAAGCCCAAAGCCCAAAAGCACA
ACCCGAACACTCTTTTTAGTGTAC--GCACGTGCAAGCCCGGCCTGAAATACAGAGAAAAAAAGAAGCCCAAGCCCGGCC
CGAACCATCTTCCAGGCTGCAAAACAAGGCCTAAGCCCGGCCTGGGTTGTCCATGCCTAGGTTTTACTCGACTCCGGAGC
GCACCTTGGGTAGAC-----------------------------------------------TCGTGGACAAAAGCAGCA
TGCA---AGGAGTCAT---------CTGCCAGTTCTTCGCACCGTACCCGTAGCTACT-CTGCTTTCAGCTCAGGCTGGT
CGTCAGGCCCTGGCCTTGTGCCAGCGCTCTCGACCAATCGGCCACCACCTTTTTCTTCTTCC-TTCTGCCACCATCTTTC
CGGACGGCAGAGGCAGAGTTCAAATCCCACCATAGCCTACACGCCCCTGTTCCCTCTGGTTAAATTGATAGCCTAAAACC
CCCGTCGCCCACGCTTCTGTCACACTCACAGGCACAGCCACGCTCGAGCGAGAGCCACCCAAGCGGAGCCGAGCGAGCGC
ACCAAGCCAAGCCGGCCGGTCGAGATGGCGTCGTCGTCGCCGCCGTCGTGGATCATCCTGGGCAGCGTGGCGCGGGTGTC
CGGCACGGACGCCGCGGCCGAGGACATCCCGCCGGGCGCCGACCTCGCGCTCGCCCTCGCCGCGCCGCCGCGCGTCACCC
TGCTCACCGTGCCCCTGCGCGTCTCGCCCGGCCCGGACGAGTACCCCATGGTCCTCGCCGTCGACCCCTCCGGCCTCCTC
CTCCTCTCCACGCCCCCGGCCCCGAGGCCTCGCCCGTTGCCGCCCTCCAGACCCGACGCCGACGGCTTCGTCACGCTCAA
CATCACCGACCGCAAGCCCCCGGGCTACTACGTCTGCGACGCCTCCTCCTCCTCCGCCGCCCGCCTCCCCGGCAACGGGC
GCAGTTTCCTCGACGCCCGCTCCGTCGGCCTCCTCGCGTCCCCGGCGGGCGGCGGCCACTACATGGTCGTCGAGCTCCAG
CCGCTCATCGGCAGCGACGAGGCCACGCTGCTCTGCTTCTCGTCCGTGACGGGGTGGTGGAAGGAGAAGGACGTGTTCTA
CCCCGTGCGCTACGGGATCTGGAACACCGACGCCGCGATCACCAACGCCGGGAAGCTCTGCTGGGTGGACCTCTCCTCCG
GCATCCTCTCCTGCGACCCGTTCGCCAAGAAGCCGGTCCTGGACTTCGTCGAGCTCCCGGAGGGCAGGCTGCGGCAGAAT
ATCCACTGCCTCCACTGCGCCGGGAGAGAGCTGAGCACGCGCCGCTGCGTGCAGGTCAGCGCTGGCATGTTCCGCCTGGT
GGAGCTAACCTGCGGCGACCACAGCTCTCGGCCCAGGGGCGTCGTGCTCGCCTCTTGGATGAGGCTCCAGCAGGCGCAGT
CCCGGAGCCACCGCAAGGCACCTCGGGTGGTCATGTGGACGCTGGCCGATCAGGACACCGGGGAGTGGAAGGTGGAGCAC
AGGGTGAACTTGGCGGACGTCTGGGCGGATGGGAGCTACAAGGCCACCGGGCTGCCCAAGAAAACACCTGTGCTCGCGCT
CGTCCACCCCAAGAACCCAGATGTGGTGTACTTCTTCCTGGGCAAGCACCTCTTGGGCGTCAACCTGCGCACGAGGAAGG
TGGTGGAGTGTGAGGTCTACGAGCTGGTCGGACCGAGCAGGAAACATGTCTCCTCCCGCTGCGTTCACCCATGGGAGCTG
CCGGCAACGCTTTGTGTAGGTAATCAACAATAATCCACATCGTCTCATCTGTGCTGTTGCTTTGATGCTGTTGATATGAG
GTTCAGAACAATTGAGAAAGACTCTCCTTTTCACGCTGATACGCCTTCTAATGTGCTGATCGTGTATGCTGGACGTGATT
ATACCTCAAATATGTGGTTTTGGTAGCTATAGGACCCTATAATGATCTGATCCTGATTCGTGTTTGGACTCTGAGATAGT
TTACTCTGTCCATATTTGCTGGTTGTAACTGTGATCACACATATTACCGTCTCCTGCAAATTTTATGGGAGTGAAAAAAA
TTCTGTCTTAATCGATAATTAAACTGTACATCCTCTTACCCATATCTGGCCTTGTCTATAAATGAGTCTGTAGTTCCCCC
GCAGAAAATAGGTGGATGCTGTAGAGTAAGCAACTACATTCTTCAGTACATATACTTGCACATGCCCTGCCAATGCTAAG
GTGTCAATTAGCACAGCTCCAGTGCTAGTCATTCCGTCAGAATCTGCGTAAGCATGTATTTCATTATCATTTTGA-----
-----------AAATGCATTGGAAATGATTTAGTTACCGGTTATCCTTGCCATACATGCATCATCGATCCATCTTTTTAT
ATCTAATATTTGTTTTAGATGTTCAATTCTCCGTTAATGCAGATTTTGTAGCATTCATTGTAGACAACAACTTGTGTGCA
GTTGTATCAGCTTGTTGGAACTATATGATTAATAAGGTTCTACTATACTGTAGAAACTAATTCACCCATGTAGTAGAACA
-----TAATATGGATGTGAACTGGTTT--CCTATTCCTGTAGTCGGTTAGTGGCAGGGGTACTGCCATAGACCCGGAACT
ACTGAAGTACCATTCCAGTTTACGATAGTACTGAGTGTTTATCTTCATGGTCTTACAAGTATGTTTCTAAATTAATTTCT
GAAGTGTTCCAGTTTAGGCTGTGTGAAACAAAATAGGCTAATCTTATAGCTAGGAGTTTCAACTGTATATGACCTCTATA
GACTTAATA-----------------------------------AAAGTTTTCCTAAAACAACCAATGAAGGAATTTTAT
CTGACTGAACTTGCTCCATGTTCCTGAGGATGCTCTCAGTTATCTTTCACTGTATGCATATTTCAGAATTGGAAATGCCA
TCTCTGCAT-CATGGCAAAAAGGGATTCTGCTTCTCTGGACATAATGTTATATTTCTATCTCTTCACTG-----------
---TAGCATAGTGTATCTACCTGCTTCTGTGTTATGTTGTTATGTAATTTCGAATGACAAGAGTAAGGTAGATACTCTAT
CAATTTGTATA----GTAGTATCTTTCAACATCAATAAAA-AGGGTTTGCATGGTATCTAGCTGTGGTGAGTTAATCGTA
AGGGC---------TGTTTTCTTTTGGGAAGCAACCAAAGTTAATTCTGCACCACCTTAATTTTTGTTTCACTTCAATTA
ACATTCTTTAATCCAAATTTAGGCCAAACGATAAATTGAATGCTTATTTTTGTGAGTGCTGGATCGTGTACTCTGACTAA
TTAGAATGCTATTCTTATTTCAACATTGAAGGTATTCCTAGTGAGACCGGCAGTGGTGTGAATGACGGCTTTGCTTCTGT
GGCTTCTAATGAGAGGGGCCGAGATTGAGGAACAGAATTACCATGGTGGCCTTTTCGCAGGTGAGGTTATCCACATTGCC
TCTGCATTCCATCTTGTTTTGAAATGGG-CTGTCTTCCATTTTTT-TTGAGCCGCTGTCTTCCATTGCTGCTACAGCTTG
TAA---------------------------------CAGTTATGTCCTTCTTCCACAGTTTGGTTCAGATAAGGCCCTGG
AACTGGAAGTAGCACATCAAGTTATTGCAAGGTGGCTAGAATTAAGACAACTCCTAGGTGATGACCAGCCTTGGCG----
---------TCAACAGCCTCCGGATTGTCATGTTTCAAATGTTAACTTCATGTTTTTATCTACTCTTTATGTCTGTTGGC
ACTTCAGGTGTAACGAATTAGCTGGGTTACTCACTTGCTTGCATGGACTTGTGCACTCTGCTCAGTAATTTACCGTTGCA
TGCTGTATTATCAACTGCTTATGCTTTCCTTGGTTCTGATCAAATGGAAGTGAGGATGCATCTTGTGCTTCATCAGATTC
CAAAGTTACAAACTTTCTCCGACCGAGCCTTTTCCTCTCACATTGATGTAACTAGGCTAACTAGCTGATAACNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNATGCTACGAGGTCGACTGACACTGCAAGGCTGGTCACCTGGCCACCAGCTGCTGCAATCCAGATGCGTGATGTT
GCGAGGTTGACGGTCGCTGCTACAAGCGGGACGCTG
>chr3B_1
GGGTGTTTGCAAAAGCTGATATAACTTGTCCTGTTCA-G-AGGTTAAGAAGCTATTCAGAAATATCATCAGCTTCGTAGT
ATTTCTTTTGTTAGGCGAGAGGCCAATATGGTCCATCACCTAAGTGTCAAACAGACTAGTGAGGTTTTTTGGATGTGTCT
CTGGATGAACTATGTTTAAGAATTCCTTCATGGTTGTATTACCCGCGAACGTATTTCATGTGAGTAATCAATAAAGCTCC
TAAATTAGAAAGAAAGAAAAAGGCATTGCGAT--GTATATTGACGTGCCAAACCGCGCATTCCACAAT--CAAATTTGTT
GCTCGACTCTAAACCCGAGCAAACGTCGGCC-GGGCTTGTAAAGGCCTGACCATCATTTCTCAAGCATGAGCCCAGCTC-
----------AAAGCCCGAAATACTCTCTATTTTCAAGCCCAAAAACAGATCGAAATTAAGCCCAAAGCCCGAAAGTGCA
GCCTGAACGTTGTTTTTAGTGTAC--GCACGTGCAAGCCCGACCCAAAATACAAAAG--AAGAGAAGCCCGAGCCCGGCC
CGAACAATCTTCCAGGCTGCAAAACAAGGCTCAAGCCTGGCCCGGGTTGTCCATGCCC-GG-TTTACTCGACTCTGGAGC
GCACCTTGGGTAGACCTATATGGTGTACAAAGATACTC-CTTGCGAGATTAAAAAAACTGGCTCGTGGACAAAAGCAGCA
TGCAGGAAGGAGTCAT---------CTGCCAGTTCTTCGCACCGTACCCGTAGCTACT-CTGCTTTCAGGTCAGGCTGGT
CGTCAGGCCCTGGCCTTGCGCCAGCGCTCTCCA-CAATCGGCCACCACCTTTTTCTTCTTCC-TT-TGCCACCATCTTTC
CGGACGGCAGAGGCAGAGTTCAAATCCCACCATAGTCTACACGCCCCTGTTCCCTCTGGTTAAATTGATAGCCCAAAACC
CCCGTCGCCCACGCTTCTG------TCACAGGCACAGCCACGCTCGAGCGAGAGCCACCCAAGC----------------
-------CAAGCCGGTCGGTCGAGATGGCGTCGGCGTCGTCGCCGTCGTGGATCATCCTGGGCAGCGTGGCGCGGGTGTC
CGGCACGGACGCCGCGGCCGAGGACCTCCCGCCGGGCGCCGACCTCGCGCTCGCCCTCGCCGCGCCCCCGCGCGTCACCC
TGCTCACCGTGCCCCTGCGCGTCTCGCCCGGCCCGGACGAGTACCCCATGGTCCTCGCCGTCGACCCCTCCGGCCTCCTC
CTCCTCTCCACGCCCCCGGCCCCGAGCCCTCCCCCGTCGCCGCCCTCCAGCCCCGACGCGGACGGTTTCGTCACGCTCAA
CATCACCGACCGCACGCCCCCCGGCTACTACGTCTGCGACGCCTCCTCCGCCGCCGCCACCCGCCTCCCCGACCACGGCT
TCGGCTTCCTCGACGCCCGCTCCGCCGGCCTCCTCGCGTCCCCGGCGGGCGGCGGCCACTACATGGTCGTCGAGCTCCAG
CCGCTCATCGGCAGCGACGAGGCCACGCTGCTCTGCTTCTCGTCCGTGACGGGGCGGTGGAAGGAGAAGGACGTGTTCTA
CCCCGTGCGCTACGGGATCTGGAACACCGACGCCGCGATCACCAACGCCGGGAAGCTCTGCTGGGTGGACCTCTCCTCCG
GCATCCTCTCCTGCGACCCGTTCGCCAAGAAGCCGGTCCTGGACTTCGTCGAGCTCCCGGAGGGCAGGCTGCGGCAGAAC
ATCCACTGCCTCCACTGCGCCGGGAGAGAGCTGAGCACGCGCCGCTGCGTGCAGGTCAGCGCTGGCATGTTCCGCCTGGT
GGAGCTGACCTGCGGCGACCACAGCTCTCGGCCCAGGGGCGTCGTGCTCGCCTCTTGGATGAGGCTCCAGCAGGCGCAGT
CCCGGAGCCACCGCAAAGCACCTCGGGTGGTCATGTGGACGCTGGCCGATCCGGGTACCGGGGAGTGGAAGGTGGAGCAC
AGGGTGAACTTCGCGGATGTCTGGGCGGATGAGAGCTACAAGGCCACCGGGGTGCCCAAGAAAACACCTGTGCTCGCGCT
CGTCCACCCCAAGAACCCAGATGTGGTGTACTTCTTCCTGGGCAAGAACCTCTTCGGCATCAACCTGCGCACGAGGAAGG
TGGTGGAGTGTGAGGTCTACGAGCTGGTCGGACCGAGCAGGAAACATGTCTCCTCCCGCTGCCTTCACTCATGGGAGCTG
CCGGCAACGCTTTGTGCAGGTAATCAACAATAATCCACATTGTCTCATCTGTGCTGTTGCTTTGATGCTGTTGATATGGT
TCAGAACAC---TGAGAAAGACTCTCCTTTTCACGCTGATACGCCTTCTACTGTGGTGATCCTGTATGCTGCACGTGATT
ATGCCTCAAATATGTGGTTTTGGTAGCTA--GGAACCTATAATGATCTGATCCTGATTCATGTTTGGACTGTGAGATAGT
TTGCTCTATGCATATTCCCTGGTTGTAACTGTGATCACACATATTACTGTCACCTGAGAATTTTATTGGAATG--AAAAA
TTCCGTTGTAATCGATGGTTAACGTGTACATCCTCG--------------------TATAAATGAGGCTGTAGTTCCCCG
GCAGAAAATAGATAGACGCTGTAGAGTAAGCAGCTACATTCTTCAGTAGATATACTTACACAGCTCCTGCCCATGCTAAG
GTGTCAATTAACAAAGCTTCAGTGCTAGCCATTTCGTCAGAATTTGCGTAAGCATGTGTTTCATTATCATTTTGGACCGA
TCGTCACCAGTAAATGCATTGAAAATGATTTAGTTATTGGTTATCCT---------TGCATCGTCGGTCCATCTTTTTAT
ATCTAACTTA--TTTTAGATGTTCAATTCACCGTTGATGCAGATTTTGTAGAATTCATTGTAGACAACAACTTGTGTGCA
GTTCTACCAGCCTGTTGAAACTATGAGATTAATAAGGTTCTATTATA-----GAAAAGAATTCACCCATGCAGTACAACA
TACTGTAATATGGATGTGAATTGGTTTTGCCTATTCCTGTAGTCTGTTGGTGGCAGTGGTACTGCTATAGACAA-GAACT
ACTGAAGT---ATTCCAGTTTACGATAGTAC-GAATGTTTATCTTCATCGTCTTATAAGTATGCTTCTAAATCAATTTCT
GAAGTGTTACAATTTAGGCTGTGTATAAGAAAATAGGCTAATGTTACAGCTAGGAGTTTCAACTGTATATGACCTCTGTA
GACTAGTATACTTCATAGTTGCTACTTCCATGAATTTCCTTAATAAAGTTCACCTAAAACAACCAGTGTAAGAATTTGAT
ATGACTGAACTTGCTCCATGTTCCTGAGGATGCTCTCAGTTATCATTCACTGTATGCATATTTCAGAATTGGAAATGCTA
TCTCTGCATCCATGGCAAAATGGGATTCCGCTTCTCTGGACATATGCTATATTTACCTCTTTACGTTAGGGGCTGTAATC
AGATACCATAGCGGATCTACCTGCTTCTATGTTATGTTGTTATGTAATTTCGAATGACAAGAGTAAGGTAGATATTGTAT
CTGTATATATAGTACGTAGTATCTTTCAACAACAACAAAAGAGGGTTTGCATGGTATATCTAGCTGACTAGCTGTAGTGG
TAACTGGTAAGGGTTGTTTTCTTTTCGGAAGCAACCAAAGTTAATTCTGCACCACGTTAGTTTTTGTTTCACTTAACTTA
ACATTCTTTAATCCA---------------------------------------------------------------AA
TTAGCATGCTATTCTTCTTTCAACATTGAAGGTGTTCCTGGTCAGACCGACAGTCGCGTGAACGAAGGCTCTGCTTCTGT
GGCTTCTATTGAGAGGGGCCGAGATTGAGGAACAGAATTACCATGGTGGCCTTTTCGCAGGTGCGGTTATCCACATTGCC
TCTGCATTCCATCTTGTTTGGAGATGAGTCTGTCTTCCATTTTTTCTTGAGCCGCTGTCCTTCATTCCTACTACAGCTTG
TAATAGTGTTTTTTTTAGAATCTACACACCTTGTAACAGTTGTGTCCTCCTTCCACAGTTTGGTTCAGATAAGGCC----
--CTGGAAGTAGCACATCAAGTTATTGCAAGGTGGCTAGAATTAAGACAGCTCCTAGGTGAAGACCAGCCTTGGCGGACA
ATGGTTGCATCAACAGCCTCCGGATTGTCATGTTTCAAATGTTAACTTCATGTTTTTATCTACTCTTTGTGTCTGTTGGC
ACTTCAGGTGTAACGAATTAGCTCGGTTACTCACTTGCTTGCATGGAATTGTGCACTCTGCTCAGTAATTTACCGTTGCA
TGCTGTAGTATCAACTGCTTATGCTTTCCTTGGTTCTGATCAAATGGAAGTGAGGATACACTTTGTGCTTCATCAGATTC
CAAAGTTACAAACTTTCTCCAACGGAACCTCTTCCTCACACATTGATGTAACTGGTTGATAACTAGGCGCGCGCCGGCCG
CCTCCGCGACCATCCAATTAGCCTTTGATCGTGCGGTGCTCAATAACCCCCCACCACACACACAGGCACTTTGCAACGTG
AGCCATGTTGCAAGACGGCCGATCGCAACACATGCTGTTTTGTGGACCGGCCAGATTGAGGGAGAGCGGTGGGGGCTGGA
TCTCGCATCGAAGACAACACATGCGTG-----------------------------------------------------
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------ATGCTACAAGGTCGACTGACACTGCAAGGCTGGTCACCTGG---------------------------------
------------------------------------
>chr3A_1
GGGTGTTTGCAAAAGCTGATATAACTTGTCATGTTCAAG-AGATTAAGAAGCTATTCGGAAATATCATTAACTTAGTAGT
ATTTCTTTTGTTAGGCGAGAGGCCAATATGGTTGCTCACCTAAGTGCCAAACAGGCTAATGAGGTTCGTTGGAGGTGTCT
CTGGATCAATCATGTTTAAGAATTCCTCGATGGTTGTATTACTCGCGAATATATTTTCTATGAGTAATCAATAAAGCTCC
TAAACTAGAAAGAAAGAAAAAGGCATTGTGATGCGTATATTGACATGCCAAACCGCGCGTTCCATAG--ACATATTTGTT
GCTCGACTCTAAACTCGGGCAAATGTCGGACCAGGCTTGTAAAAGCCCGACCTTCATTTCTCAAGCCCGAGCCCGGCCC-
----------GAAGCCCAAAATACTCTCTGTTTTTAAGCCCAAGCCT------------AGCCCGAAGCCCGGAAGCCCA
GCCCAAACGTTGTTTTTTAGTGTAATGCACGTGCAAGCCTGGCCTGGAAAACAGA--AACAAAGAAGCCCGAGCCCAGCC
CGAACAATCTTCCAGGCTGCAAAACAAGGCCCAACCCCGGCCCGGGTTGTCCATGCCCAGG-TTTACTCGACTCCGGAGC
GCACCTTGGGTAGACCGATATGGTGTACAAAGATACTTTCTTGCGAGATAAAAAAAATTGGCTCGTGGAGAAAAGCAGCA
TGCAAGGAGGAGTCATCTACCAAGACTGCCAGTTCTTGGCACCGTACCCGTAGCAAGTCCTGCTTTCAGCTCAGGCTGGT
CGTCAGGCCCTGGCCTTGTGCCAGCGCTCTCCACCAATCGGCCACCATCTTTTTCTTCTTCCTTT-TGCCACCATCTTTC
CGGACGGCAGAGGCAGAGTTCAAATCCCACCATAGTCTACACGCCCCTGTTCCCTCTGGTTCAATTGATAGCCTAAAACC
CCCGTCGCCCACGCTTCTG------TCACAGGCACAGCCACGCTCGAGCGAGAGCCACCA-----------AGCGAGCGC
ACCAAGCCAAGTCGGCCGATCGAGATGGCGTCGTCGTCGTCGCCGTCGTGGATCATCCTGGGCAGCGTGGCGCCGGTGTC
GGGCATGGACGCCGCGGCCGAGGACCTACCGCCGGGCGGCGACCTCGCGCTCGCCCTCGCCGCGCCGCTGCGCGTCACCC
TGCTCACCGTGCCCCCACGCGTCTCGCCCGGCCCGGACGAGTACCCCATGGTCCTCGCCGTCGACCCCTCCGGCCTCCTC
CTCCTCTCCACGCCCCCGGCCCCGATCCCTCCCCCGTCTCCGCCCTCTAGCCCCGACGCC--------------------
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>chr3D_1070
GCT-----------------------------------------------------------------------------
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----------------GCCGAGGACCTCCCGCCGGGCGCCGACCACGCGCTCGCGCTAGCCGCGCCGCCGCGCGTCACCC
TGCTCACCGTGCCCCTGCGCGTCTCGCCCGGCAAGGACGAGTACCCCATGGTCCTCGCCATCGACCCCTCCGGCCTCCTC
CTCCTCTCCACGCCCCCGGCCCCGAGCCCTCCCCCGTCGCCGCCCTCCAGCCCTGACGCCGACGGTTTCGTCACGCTCAA
CATCACCGACCGCACGCCCCCCGGCTACTACGTCTGCGACGCCTCCTCCTCCGCCGCCGCCCGCCTCCCCGGCAACGGGC
GCGGCTTCCTCGACGACCGCTCTGTCGGCCTCCTCGCGTCCCCGGCGGGCGGCGGCCACTACATGGTCGTCGAGCTCCAG
CCGCTCATCGGCAGCGACGAGGCCACGCTGCTCTGCTTCTCGTCCGTGACGGGGTGGTGGAAGGAGAAGGACGTGTTCTA
CCCCGTGAGCTACGGGATCTGGAACACTGACGCCGCGATCACCAACGCCGAGAAGCTCTGCTGGGTGGACCTCTCCTCGG
GCATCCTCTCCTGCGACCCGTTCGCCTAGAAGCCGGTCCTGGACTTCGTCGAGCTCCCGGAGGGCAGGCTGCGGCAGAAC
ATCCACTGCCTCCACTGCGCCGGGAGAGAGCTGAGCACGCGCCGCTGCGTGCAG--------------------------
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>SNPs
---------------------------------------S-------S--------------------------------
----------------S-------S-----S-------------------------------------------------
S-----------------------S-----------------------------------------------------S-
----------------S------S-----------------------------------SSSSS--SSS---S------S
---S----S--------------------S-S--------------------S--------S----SSSSSS-S-S--SS
SSSSSSSSSS-------------------------------S-------SS--------------------S-----S--
S-------SS-S-------------------------------------------SS-------------S---------
-----S-------------------------S----------S--------------S---S------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------S---------------------------------S--------------
-----------------------------------S--------------------------------------------
-------------------SSSSSS---------------------------------------SSSSSSS---------
---------------------------------------S----------------------------------------
-------------------------S------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------S----S-----S------------S--------------S--------------
--------------S------S------------------------------S---------------------------
--S-S---------------------------------------------------------------------------
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-------------------------------------------------------------------------------S
--------------------------------------------------------------------------------
------S-------------------------------------------------------------------------
----------------S----------------------------------S--SS------------------------
-----------S-----S-------------S-------------------S----------------------------
----------------------------------------------S-------S---S---------------------
--------------------------------------------------------------S-----S-----------
----------------S-----------------------S-------------------------------------SS
SSSS-SS--SSS--------------------------------------S----S-----S---------S--------
--S--------------------------SS---S------------------------S----------S---------
--S----S-S------SS-----------------------------S---S----SS--------S---S--SS-----
---S--SS--------SS----SS-----------SSSSSSSSSSSSSSSSSSSSS----------S------------S
-----------S-S--S---------------S---------------S--------S----SSS------S--------
----------S--S----S---------S----S---------S-------------S----------------S-----
---------------------S--------------SS---------SSSSSSSSS------S---S-------------
------SS-SSS-----------------S-----S---------------S----------------------------
---S--S----S-----S------SS----------------S----SSSSS----SS------------S----S----
--------------------S-----------------------S---S-------S--------S------SSS-----
--------SSS--------------------S--S-------------S------S-------S--------S-------
--------S--S------------SS--S-------------S---S------------------------------S--
----SSSSS-----------------------------------------SS-------------S--S-S------S--
S-------------------------------------------S---------------------------------S-
--------------------S-------S---------------SSS-SSSS--S-SSSS-SSSSSSS------------
-----S-----S-S--------------S---------------------------------------------S-S---
-SS-S-S------------------------S---S---------------------S-SSSSS--SSS--S-SSSSSSS
SSSSS--------------------S-----------------------------S---S--------------S-S---
---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
----S-----------S----------------S-----S--S------S----S-S-----S--S----S---------
--------S------------------------------------------------------S----------------
-------------------S--S---S--------------------------------S-S----S--S----------
-----------------------------------------S------S---------------------------SSSS
SS-----------------------------------------------S-----------S------------------
--------------------------------------------------------------------S-----------
-----------------------S-----------------------S--------------------------------
-------S-------------------------------------------------S--SS------------------
--------------------S--S--S---S------S---------------S-SSS-SSSSSSS-SSSS-SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS-------S---------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_481
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------CCCAAAGCCCAAAAGCACA
A-------------------------------------------------------------------------------
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>reverse_2281
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----------------------------------------CGTCTCATCTGTGCTGTTGC--------------------
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>forward_2012
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------------------------------------------------------------------------TGGAGCAC
AGGGTGAACTTG--------------------------------------------------------------------
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------------------------------------
>reverse_3085
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--------------------------------------------GGTTAGTGGCAGGGGTACTG----------------
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------------------------------------
>forward_2654
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--------------------------------------------------------------------------TCCCCC
GCAGAAAATAGGTG------------------------------------------------------------------
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>reverse_3895
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------------------------------------------------------GGTGTGAATGACGGCTTTGC------
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------------------------------------
>forward_3829
--------------------------------------------------------------------------------
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-------------------------------------------------TTGTGAGTGCTGGATCGTGT-----------
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------------------------------------
>reverse_4946
--------------------------------------------------------------------------------
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-----------------------------------------------------------------CAGATGCGTGATGTT
GCGAG-------------------------------
