Multiple sequence alignment - TraesCS3D01G161900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G161900 chr3D 100.000 3367 0 0 1 3367 132609093 132605727 0.000000e+00 6218.0
1 TraesCS3D01G161900 chr3D 94.500 200 11 0 1 200 329633441 329633242 3.260000e-80 309.0
2 TraesCS3D01G161900 chr3D 94.500 200 11 0 1 200 486905380 486905181 3.260000e-80 309.0
3 TraesCS3D01G161900 chr3D 86.747 166 14 6 384 549 445811489 445811332 9.600000e-41 178.0
4 TraesCS3D01G161900 chr3D 85.714 175 16 6 381 554 98418074 98417908 3.450000e-40 176.0
5 TraesCS3D01G161900 chr3D 81.818 121 10 2 708 816 547434587 547434467 1.290000e-14 91.6
6 TraesCS3D01G161900 chr3D 97.959 49 1 0 699 747 388452852 388452804 5.990000e-13 86.1
7 TraesCS3D01G161900 chr3B 96.003 1576 35 15 839 2402 189159670 189158111 0.000000e+00 2536.0
8 TraesCS3D01G161900 chr3B 94.201 983 39 7 2394 3367 189158086 189157113 0.000000e+00 1483.0
9 TraesCS3D01G161900 chr3B 96.053 152 5 1 552 703 189159818 189159668 2.590000e-61 246.0
10 TraesCS3D01G161900 chr3B 82.963 135 8 9 699 819 75719247 75719114 1.280000e-19 108.0
11 TraesCS3D01G161900 chr3B 77.922 154 17 7 701 841 238115724 238115575 2.780000e-11 80.5
12 TraesCS3D01G161900 chr3B 78.814 118 12 9 742 847 6533494 6533610 2.170000e-07 67.6
13 TraesCS3D01G161900 chr3B 94.286 35 0 2 816 848 51800888 51800854 6.000000e-03 52.8
14 TraesCS3D01G161900 chr3A 95.415 1592 29 16 845 2402 146396006 146394425 0.000000e+00 2495.0
15 TraesCS3D01G161900 chr3A 96.817 974 27 2 2394 3367 146394400 146393431 0.000000e+00 1624.0
16 TraesCS3D01G161900 chr3A 95.000 200 9 1 1 200 500807264 500807066 2.520000e-81 313.0
17 TraesCS3D01G161900 chr3A 94.805 154 5 3 556 706 146396160 146396007 1.560000e-58 237.0
18 TraesCS3D01G161900 chr3A 91.892 148 10 2 209 356 146396440 146396295 4.400000e-49 206.0
19 TraesCS3D01G161900 chr3A 86.550 171 14 8 384 554 7390888 7391049 2.670000e-41 180.0
20 TraesCS3D01G161900 chr3A 85.965 171 15 8 384 554 616474316 616474155 1.240000e-39 174.0
21 TraesCS3D01G161900 chr5D 95.522 201 9 0 1 201 280368032 280368232 4.190000e-84 322.0
22 TraesCS3D01G161900 chr7D 94.608 204 10 1 1 204 475236196 475236398 7.010000e-82 315.0
23 TraesCS3D01G161900 chr7D 94.318 88 5 0 1038 1125 148148069 148148156 5.860000e-28 135.0
24 TraesCS3D01G161900 chr7D 82.677 127 10 2 702 816 9393976 9394102 5.940000e-18 102.0
25 TraesCS3D01G161900 chr7D 98.113 53 1 0 699 751 556720485 556720433 3.580000e-15 93.5
26 TraesCS3D01G161900 chr7D 81.203 133 8 5 699 816 37293022 37292892 1.290000e-14 91.6
27 TraesCS3D01G161900 chr1B 95.000 200 10 0 1 200 96269515 96269316 7.010000e-82 315.0
28 TraesCS3D01G161900 chr1B 94.527 201 9 2 1 200 38145643 38145842 3.260000e-80 309.0
29 TraesCS3D01G161900 chr1B 85.057 174 17 8 381 554 613720849 613721013 5.780000e-38 169.0
30 TraesCS3D01G161900 chr1B 89.474 95 10 0 1031 1125 575923503 575923597 1.640000e-23 121.0
31 TraesCS3D01G161900 chr1B 100.000 28 0 0 814 841 415719544 415719571 6.000000e-03 52.8
32 TraesCS3D01G161900 chr4D 94.500 200 11 0 1 200 375680357 375680556 3.260000e-80 309.0
33 TraesCS3D01G161900 chr4D 92.593 54 3 1 699 751 419200013 419199960 3.600000e-10 76.8
34 TraesCS3D01G161900 chr2D 92.857 210 14 1 1 209 529481232 529481023 1.520000e-78 303.0
35 TraesCS3D01G161900 chr2D 81.875 160 26 1 200 356 134651047 134650888 7.580000e-27 132.0
36 TraesCS3D01G161900 chr1A 75.591 508 89 27 1031 1518 521331960 521332452 5.660000e-53 219.0
37 TraesCS3D01G161900 chr1A 87.117 163 13 7 384 546 156478919 156478765 9.600000e-41 178.0
38 TraesCS3D01G161900 chr1A 91.667 60 4 1 693 751 438341935 438341994 7.740000e-12 82.4
39 TraesCS3D01G161900 chr6B 87.719 171 13 5 384 554 500970309 500970147 3.430000e-45 193.0
40 TraesCS3D01G161900 chr6B 85.632 174 15 7 382 554 341285600 341285436 1.240000e-39 174.0
41 TraesCS3D01G161900 chr6B 94.118 68 4 0 1038 1105 595226698 595226765 1.650000e-18 104.0
42 TraesCS3D01G161900 chr6B 91.304 69 6 0 748 816 310640734 310640802 9.950000e-16 95.3
43 TraesCS3D01G161900 chr6B 83.582 67 10 1 291 356 382038462 382038528 1.010000e-05 62.1
44 TraesCS3D01G161900 chr4A 85.882 170 14 7 381 549 120953429 120953589 4.470000e-39 172.0
45 TraesCS3D01G161900 chr6D 90.351 114 9 2 1038 1150 398178700 398178812 7.530000e-32 148.0
46 TraesCS3D01G161900 chr6D 94.737 38 2 0 286 323 320686457 320686420 3.630000e-05 60.2
47 TraesCS3D01G161900 chr7A 88.235 119 11 3 1038 1155 149303043 149303159 4.530000e-29 139.0
48 TraesCS3D01G161900 chr6A 92.784 97 6 1 1038 1134 544174184 544174279 4.530000e-29 139.0
49 TraesCS3D01G161900 chr6A 90.000 70 6 1 751 819 5314922 5314853 4.630000e-14 89.8
50 TraesCS3D01G161900 chr5A 88.785 107 9 1 710 816 49513204 49513101 9.810000e-26 128.0
51 TraesCS3D01G161900 chr5A 82.812 128 9 3 699 813 505768643 505768770 5.940000e-18 102.0
52 TraesCS3D01G161900 chr1D 90.526 95 9 0 1031 1125 426404860 426404954 3.530000e-25 126.0
53 TraesCS3D01G161900 chr1D 86.420 81 7 3 742 819 77833192 77833271 5.990000e-13 86.1
54 TraesCS3D01G161900 chr7B 92.941 85 6 0 1038 1122 111312961 111313045 1.270000e-24 124.0
55 TraesCS3D01G161900 chr2A 82.443 131 9 6 699 816 22446767 22446896 5.940000e-18 102.0
56 TraesCS3D01G161900 chr2A 90.000 70 6 1 747 816 300326640 300326572 4.630000e-14 89.8
57 TraesCS3D01G161900 chr2A 94.340 53 2 1 699 751 17747030 17746979 2.780000e-11 80.5
58 TraesCS3D01G161900 chr2A 100.000 29 0 0 816 844 671385664 671385636 2.000000e-03 54.7
59 TraesCS3D01G161900 chrUn 100.000 28 0 0 814 841 1797314 1797287 6.000000e-03 52.8
60 TraesCS3D01G161900 chrUn 100.000 28 0 0 814 841 71170234 71170261 6.000000e-03 52.8
61 TraesCS3D01G161900 chr5B 94.286 35 0 2 814 848 4714 4682 6.000000e-03 52.8
62 TraesCS3D01G161900 chr5B 100.000 28 0 0 816 843 27316538 27316565 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G161900 chr3D 132605727 132609093 3366 True 6218.000000 6218 100.00000 1 3367 1 chr3D.!!$R2 3366
1 TraesCS3D01G161900 chr3B 189157113 189159818 2705 True 1421.666667 2536 95.41900 552 3367 3 chr3B.!!$R4 2815
2 TraesCS3D01G161900 chr3A 146393431 146396440 3009 True 1140.500000 2495 94.73225 209 3367 4 chr3A.!!$R3 3158

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
205 206 0.034767 TGGAGACGTATCAGACCGGT 60.035 55.0 6.92 6.92 0.0 5.28 F
392 499 0.105039 CCGTGCATTCTACTCCCTCC 59.895 60.0 0.00 0.00 0.0 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1738 1887 0.670162 AGCCAAAGACACACATGCAC 59.330 50.0 0.0 0.0 0.0 4.57 R
2385 2536 0.902531 TCCCATGTCGAGGAAAGACC 59.097 55.0 0.0 0.0 37.8 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.677781 TCATTTGGACTCCGTTTGATATTC 57.322 37.500 0.00 0.00 0.00 1.75
24 25 5.588648 TCATTTGGACTCCGTTTGATATTCC 59.411 40.000 0.00 0.00 0.00 3.01
25 26 4.837093 TTGGACTCCGTTTGATATTCCT 57.163 40.909 0.00 0.00 0.00 3.36
26 27 4.837093 TGGACTCCGTTTGATATTCCTT 57.163 40.909 0.00 0.00 0.00 3.36
27 28 5.174037 TGGACTCCGTTTGATATTCCTTT 57.826 39.130 0.00 0.00 0.00 3.11
28 29 5.566469 TGGACTCCGTTTGATATTCCTTTT 58.434 37.500 0.00 0.00 0.00 2.27
29 30 5.646360 TGGACTCCGTTTGATATTCCTTTTC 59.354 40.000 0.00 0.00 0.00 2.29
30 31 5.880887 GGACTCCGTTTGATATTCCTTTTCT 59.119 40.000 0.00 0.00 0.00 2.52
31 32 6.183360 GGACTCCGTTTGATATTCCTTTTCTG 60.183 42.308 0.00 0.00 0.00 3.02
32 33 6.238648 ACTCCGTTTGATATTCCTTTTCTGT 58.761 36.000 0.00 0.00 0.00 3.41
33 34 7.391620 ACTCCGTTTGATATTCCTTTTCTGTA 58.608 34.615 0.00 0.00 0.00 2.74
34 35 7.881232 ACTCCGTTTGATATTCCTTTTCTGTAA 59.119 33.333 0.00 0.00 0.00 2.41
35 36 8.624367 TCCGTTTGATATTCCTTTTCTGTAAA 57.376 30.769 0.00 0.00 0.00 2.01
36 37 9.069082 TCCGTTTGATATTCCTTTTCTGTAAAA 57.931 29.630 0.00 0.00 33.58 1.52
37 38 9.124807 CCGTTTGATATTCCTTTTCTGTAAAAC 57.875 33.333 0.00 0.00 31.37 2.43
38 39 9.893305 CGTTTGATATTCCTTTTCTGTAAAACT 57.107 29.630 0.00 0.00 31.37 2.66
46 47 9.936759 ATTCCTTTTCTGTAAAACTCAAAAACA 57.063 25.926 0.00 0.00 31.37 2.83
47 48 9.765795 TTCCTTTTCTGTAAAACTCAAAAACAA 57.234 25.926 0.00 0.00 31.37 2.83
48 49 9.765795 TCCTTTTCTGTAAAACTCAAAAACAAA 57.234 25.926 0.00 0.00 31.37 2.83
51 52 9.765795 TTTTCTGTAAAACTCAAAAACAAAGGA 57.234 25.926 0.00 0.00 29.59 3.36
52 53 9.765795 TTTCTGTAAAACTCAAAAACAAAGGAA 57.234 25.926 0.00 0.00 0.00 3.36
53 54 9.765795 TTCTGTAAAACTCAAAAACAAAGGAAA 57.234 25.926 0.00 0.00 0.00 3.13
54 55 9.765795 TCTGTAAAACTCAAAAACAAAGGAAAA 57.234 25.926 0.00 0.00 0.00 2.29
59 60 8.669946 AAACTCAAAAACAAAGGAAAAACAGA 57.330 26.923 0.00 0.00 0.00 3.41
60 61 8.669946 AACTCAAAAACAAAGGAAAAACAGAA 57.330 26.923 0.00 0.00 0.00 3.02
61 62 8.669946 ACTCAAAAACAAAGGAAAAACAGAAA 57.330 26.923 0.00 0.00 0.00 2.52
62 63 8.556194 ACTCAAAAACAAAGGAAAAACAGAAAC 58.444 29.630 0.00 0.00 0.00 2.78
63 64 8.669946 TCAAAAACAAAGGAAAAACAGAAACT 57.330 26.923 0.00 0.00 0.00 2.66
64 65 9.114952 TCAAAAACAAAGGAAAAACAGAAACTT 57.885 25.926 0.00 0.00 0.00 2.66
65 66 9.168353 CAAAAACAAAGGAAAAACAGAAACTTG 57.832 29.630 0.00 0.00 0.00 3.16
66 67 6.480524 AACAAAGGAAAAACAGAAACTTGC 57.519 33.333 0.00 0.00 0.00 4.01
67 68 5.546526 ACAAAGGAAAAACAGAAACTTGCA 58.453 33.333 0.00 0.00 0.00 4.08
68 69 5.408299 ACAAAGGAAAAACAGAAACTTGCAC 59.592 36.000 0.00 0.00 0.00 4.57
69 70 5.405935 AAGGAAAAACAGAAACTTGCACT 57.594 34.783 0.00 0.00 0.00 4.40
70 71 4.747810 AGGAAAAACAGAAACTTGCACTG 58.252 39.130 0.02 0.02 37.62 3.66
71 72 3.865164 GGAAAAACAGAAACTTGCACTGG 59.135 43.478 6.27 0.00 36.17 4.00
72 73 3.525268 AAAACAGAAACTTGCACTGGG 57.475 42.857 6.27 0.00 36.17 4.45
73 74 0.746659 AACAGAAACTTGCACTGGGC 59.253 50.000 0.00 0.00 45.13 5.36
74 75 0.106519 ACAGAAACTTGCACTGGGCT 60.107 50.000 2.50 0.00 45.15 5.19
75 76 0.595095 CAGAAACTTGCACTGGGCTC 59.405 55.000 2.50 0.00 45.15 4.70
76 77 0.475906 AGAAACTTGCACTGGGCTCT 59.524 50.000 2.50 0.00 45.15 4.09
77 78 1.699634 AGAAACTTGCACTGGGCTCTA 59.300 47.619 2.50 0.00 45.15 2.43
78 79 2.079925 GAAACTTGCACTGGGCTCTAG 58.920 52.381 2.50 0.45 45.15 2.43
79 80 0.326264 AACTTGCACTGGGCTCTAGG 59.674 55.000 2.50 0.00 45.15 3.02
80 81 0.838122 ACTTGCACTGGGCTCTAGGT 60.838 55.000 2.50 0.00 45.15 3.08
81 82 0.326264 CTTGCACTGGGCTCTAGGTT 59.674 55.000 2.50 0.00 45.15 3.50
82 83 1.555075 CTTGCACTGGGCTCTAGGTTA 59.445 52.381 2.50 0.00 45.15 2.85
83 84 1.651737 TGCACTGGGCTCTAGGTTAA 58.348 50.000 2.50 0.00 45.15 2.01
84 85 2.196595 TGCACTGGGCTCTAGGTTAAT 58.803 47.619 2.50 0.00 45.15 1.40
85 86 3.380393 TGCACTGGGCTCTAGGTTAATA 58.620 45.455 2.50 0.00 45.15 0.98
86 87 3.388024 TGCACTGGGCTCTAGGTTAATAG 59.612 47.826 2.50 0.00 45.15 1.73
87 88 3.244249 GCACTGGGCTCTAGGTTAATAGG 60.244 52.174 0.00 0.00 40.25 2.57
88 89 3.967987 CACTGGGCTCTAGGTTAATAGGT 59.032 47.826 0.00 0.00 0.00 3.08
89 90 4.409247 CACTGGGCTCTAGGTTAATAGGTT 59.591 45.833 0.00 0.00 0.00 3.50
90 91 5.601313 CACTGGGCTCTAGGTTAATAGGTTA 59.399 44.000 0.00 0.00 0.00 2.85
91 92 5.839606 ACTGGGCTCTAGGTTAATAGGTTAG 59.160 44.000 0.00 0.00 0.00 2.34
92 93 5.785123 TGGGCTCTAGGTTAATAGGTTAGT 58.215 41.667 0.00 0.00 0.00 2.24
93 94 5.837438 TGGGCTCTAGGTTAATAGGTTAGTC 59.163 44.000 0.00 0.00 0.00 2.59
94 95 5.245751 GGGCTCTAGGTTAATAGGTTAGTCC 59.754 48.000 0.00 0.00 0.00 3.85
95 96 5.245751 GGCTCTAGGTTAATAGGTTAGTCCC 59.754 48.000 0.00 0.00 36.75 4.46
96 97 5.837438 GCTCTAGGTTAATAGGTTAGTCCCA 59.163 44.000 0.00 0.00 36.75 4.37
97 98 6.325804 GCTCTAGGTTAATAGGTTAGTCCCAA 59.674 42.308 0.00 0.00 36.75 4.12
98 99 7.147602 GCTCTAGGTTAATAGGTTAGTCCCAAA 60.148 40.741 0.00 0.00 36.75 3.28
99 100 8.683776 TCTAGGTTAATAGGTTAGTCCCAAAA 57.316 34.615 0.00 0.00 36.75 2.44
100 101 9.114938 TCTAGGTTAATAGGTTAGTCCCAAAAA 57.885 33.333 0.00 0.00 36.75 1.94
101 102 9.916360 CTAGGTTAATAGGTTAGTCCCAAAAAT 57.084 33.333 0.00 0.00 36.75 1.82
102 103 8.818622 AGGTTAATAGGTTAGTCCCAAAAATC 57.181 34.615 0.00 0.00 36.75 2.17
103 104 8.395605 AGGTTAATAGGTTAGTCCCAAAAATCA 58.604 33.333 0.00 0.00 36.75 2.57
104 105 9.197306 GGTTAATAGGTTAGTCCCAAAAATCAT 57.803 33.333 0.00 0.00 36.75 2.45
202 203 2.190325 CGTTGGAGACGTATCAGACC 57.810 55.000 12.92 0.00 46.49 3.85
203 204 1.531264 CGTTGGAGACGTATCAGACCG 60.531 57.143 12.92 4.62 46.49 4.79
204 205 1.100510 TTGGAGACGTATCAGACCGG 58.899 55.000 12.92 0.00 0.00 5.28
205 206 0.034767 TGGAGACGTATCAGACCGGT 60.035 55.000 6.92 6.92 0.00 5.28
206 207 0.381089 GGAGACGTATCAGACCGGTG 59.619 60.000 14.63 0.00 0.00 4.94
207 208 1.093159 GAGACGTATCAGACCGGTGT 58.907 55.000 14.63 4.35 0.00 4.16
254 255 2.800746 GCGACGTGCAAATGTGGC 60.801 61.111 0.00 6.30 45.45 5.01
257 258 3.254014 GACGTGCAAATGTGGCGCT 62.254 57.895 7.64 0.00 39.53 5.92
277 278 3.687102 ACGGCCCGACGTGAATGA 61.687 61.111 11.71 0.00 46.64 2.57
281 282 1.810030 GCCCGACGTGAATGAGTCC 60.810 63.158 0.00 0.00 34.10 3.85
314 315 1.850345 AGTTTTTGAGGGGTCAGTGGA 59.150 47.619 0.00 0.00 0.00 4.02
370 477 1.209621 AATACCATACCACCCGTGCT 58.790 50.000 0.00 0.00 0.00 4.40
385 492 0.721718 GTGCTGTCCGTGCATTCTAC 59.278 55.000 0.00 0.00 42.69 2.59
386 493 0.608130 TGCTGTCCGTGCATTCTACT 59.392 50.000 0.00 0.00 35.31 2.57
387 494 1.281899 GCTGTCCGTGCATTCTACTC 58.718 55.000 0.00 0.00 0.00 2.59
388 495 1.927895 CTGTCCGTGCATTCTACTCC 58.072 55.000 0.00 0.00 0.00 3.85
389 496 0.535335 TGTCCGTGCATTCTACTCCC 59.465 55.000 0.00 0.00 0.00 4.30
390 497 0.824759 GTCCGTGCATTCTACTCCCT 59.175 55.000 0.00 0.00 0.00 4.20
391 498 1.112113 TCCGTGCATTCTACTCCCTC 58.888 55.000 0.00 0.00 0.00 4.30
392 499 0.105039 CCGTGCATTCTACTCCCTCC 59.895 60.000 0.00 0.00 0.00 4.30
393 500 0.249073 CGTGCATTCTACTCCCTCCG 60.249 60.000 0.00 0.00 0.00 4.63
395 502 1.207329 GTGCATTCTACTCCCTCCGTT 59.793 52.381 0.00 0.00 0.00 4.44
396 503 1.906574 TGCATTCTACTCCCTCCGTTT 59.093 47.619 0.00 0.00 0.00 3.60
397 504 2.093658 TGCATTCTACTCCCTCCGTTTC 60.094 50.000 0.00 0.00 0.00 2.78
398 505 2.168728 GCATTCTACTCCCTCCGTTTCT 59.831 50.000 0.00 0.00 0.00 2.52
399 506 3.383825 GCATTCTACTCCCTCCGTTTCTA 59.616 47.826 0.00 0.00 0.00 2.10
400 507 4.142004 GCATTCTACTCCCTCCGTTTCTAA 60.142 45.833 0.00 0.00 0.00 2.10
401 508 5.626116 GCATTCTACTCCCTCCGTTTCTAAA 60.626 44.000 0.00 0.00 0.00 1.85
402 509 6.583562 CATTCTACTCCCTCCGTTTCTAAAT 58.416 40.000 0.00 0.00 0.00 1.40
403 510 7.686127 GCATTCTACTCCCTCCGTTTCTAAATA 60.686 40.741 0.00 0.00 0.00 1.40
404 511 7.909485 TTCTACTCCCTCCGTTTCTAAATAT 57.091 36.000 0.00 0.00 0.00 1.28
405 512 7.909485 TCTACTCCCTCCGTTTCTAAATATT 57.091 36.000 0.00 0.00 0.00 1.28
406 513 8.315220 TCTACTCCCTCCGTTTCTAAATATTT 57.685 34.615 5.89 5.89 0.00 1.40
407 514 8.202137 TCTACTCCCTCCGTTTCTAAATATTTG 58.798 37.037 11.05 1.65 0.00 2.32
408 515 6.718294 ACTCCCTCCGTTTCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
409 516 6.822170 ACTCCCTCCGTTTCTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
410 517 6.954232 TCCCTCCGTTTCTAAATATTTGTCT 58.046 36.000 11.05 0.00 0.00 3.41
411 518 7.399634 TCCCTCCGTTTCTAAATATTTGTCTT 58.600 34.615 11.05 0.00 0.00 3.01
412 519 7.886446 TCCCTCCGTTTCTAAATATTTGTCTTT 59.114 33.333 11.05 0.00 0.00 2.52
413 520 8.520351 CCCTCCGTTTCTAAATATTTGTCTTTT 58.480 33.333 11.05 0.00 0.00 2.27
414 521 9.908152 CCTCCGTTTCTAAATATTTGTCTTTTT 57.092 29.630 11.05 0.00 0.00 1.94
429 536 9.898152 ATTTGTCTTTTTAGGGATTTCAACAAA 57.102 25.926 0.00 0.00 37.32 2.83
430 537 9.898152 TTTGTCTTTTTAGGGATTTCAACAAAT 57.102 25.926 0.00 0.00 34.70 2.32
431 538 8.885494 TGTCTTTTTAGGGATTTCAACAAATG 57.115 30.769 0.00 0.00 31.94 2.32
432 539 8.700051 TGTCTTTTTAGGGATTTCAACAAATGA 58.300 29.630 0.00 0.00 31.94 2.57
433 540 8.978539 GTCTTTTTAGGGATTTCAACAAATGAC 58.021 33.333 0.00 0.00 37.92 3.06
434 541 8.923270 TCTTTTTAGGGATTTCAACAAATGACT 58.077 29.630 0.00 0.00 37.92 3.41
436 543 9.974980 TTTTTAGGGATTTCAACAAATGACTAC 57.025 29.630 0.00 0.00 37.92 2.73
437 544 8.698973 TTTAGGGATTTCAACAAATGACTACA 57.301 30.769 0.00 0.00 37.92 2.74
438 545 8.877864 TTAGGGATTTCAACAAATGACTACAT 57.122 30.769 0.00 0.00 37.92 2.29
439 546 9.967451 TTAGGGATTTCAACAAATGACTACATA 57.033 29.630 0.00 0.00 37.92 2.29
440 547 8.281212 AGGGATTTCAACAAATGACTACATAC 57.719 34.615 0.00 0.00 37.92 2.39
441 548 7.065803 AGGGATTTCAACAAATGACTACATACG 59.934 37.037 0.00 0.00 37.92 3.06
442 549 7.065324 GGGATTTCAACAAATGACTACATACGA 59.935 37.037 0.00 0.00 37.92 3.43
443 550 8.447833 GGATTTCAACAAATGACTACATACGAA 58.552 33.333 0.00 0.00 37.92 3.85
444 551 9.478019 GATTTCAACAAATGACTACATACGAAG 57.522 33.333 0.00 0.00 37.92 3.79
445 552 7.956420 TTCAACAAATGACTACATACGAAGT 57.044 32.000 0.00 0.00 41.11 3.01
446 553 7.576750 TCAACAAATGACTACATACGAAGTC 57.423 36.000 0.00 0.00 42.04 3.01
454 561 6.920817 TGACTACATACGAAGTCAAATGAGT 58.079 36.000 2.82 0.00 46.82 3.41
455 562 6.806739 TGACTACATACGAAGTCAAATGAGTG 59.193 38.462 2.82 0.00 46.82 3.51
456 563 6.920817 ACTACATACGAAGTCAAATGAGTGA 58.079 36.000 0.00 0.00 43.93 3.41
457 564 7.375834 ACTACATACGAAGTCAAATGAGTGAA 58.624 34.615 0.00 0.00 43.93 3.18
458 565 8.035394 ACTACATACGAAGTCAAATGAGTGAAT 58.965 33.333 0.00 0.00 43.93 2.57
459 566 7.295952 ACATACGAAGTCAAATGAGTGAATC 57.704 36.000 0.00 0.00 43.93 2.52
460 567 7.099764 ACATACGAAGTCAAATGAGTGAATCT 58.900 34.615 0.00 0.00 43.93 2.40
461 568 8.251026 ACATACGAAGTCAAATGAGTGAATCTA 58.749 33.333 0.00 0.00 43.93 1.98
462 569 9.254133 CATACGAAGTCAAATGAGTGAATCTAT 57.746 33.333 0.00 0.00 43.93 1.98
463 570 7.531280 ACGAAGTCAAATGAGTGAATCTATG 57.469 36.000 0.00 0.00 29.74 2.23
464 571 6.036517 ACGAAGTCAAATGAGTGAATCTATGC 59.963 38.462 0.00 0.00 29.74 3.14
465 572 6.257411 CGAAGTCAAATGAGTGAATCTATGCT 59.743 38.462 0.00 0.00 0.00 3.79
466 573 7.516470 CGAAGTCAAATGAGTGAATCTATGCTC 60.516 40.741 0.00 0.00 0.00 4.26
467 574 6.887013 AGTCAAATGAGTGAATCTATGCTCT 58.113 36.000 0.00 0.00 0.00 4.09
468 575 8.016301 AGTCAAATGAGTGAATCTATGCTCTA 57.984 34.615 0.00 0.00 0.00 2.43
469 576 8.481314 AGTCAAATGAGTGAATCTATGCTCTAA 58.519 33.333 0.00 0.00 0.00 2.10
470 577 9.102757 GTCAAATGAGTGAATCTATGCTCTAAA 57.897 33.333 0.00 0.00 0.00 1.85
471 578 9.671279 TCAAATGAGTGAATCTATGCTCTAAAA 57.329 29.630 0.00 0.00 0.00 1.52
506 613 8.929260 ATACATTCATATGTTGTGTCCATGAT 57.071 30.769 18.28 5.28 42.29 2.45
507 614 7.034685 ACATTCATATGTTGTGTCCATGATG 57.965 36.000 11.54 0.00 42.29 3.07
508 615 6.604396 ACATTCATATGTTGTGTCCATGATGT 59.396 34.615 11.54 0.00 42.29 3.06
509 616 6.682423 TTCATATGTTGTGTCCATGATGTC 57.318 37.500 1.90 0.00 0.00 3.06
510 617 5.125356 TCATATGTTGTGTCCATGATGTCC 58.875 41.667 1.90 0.00 0.00 4.02
511 618 2.947127 TGTTGTGTCCATGATGTCCA 57.053 45.000 0.00 0.00 0.00 4.02
512 619 3.438216 TGTTGTGTCCATGATGTCCAT 57.562 42.857 0.00 0.00 35.44 3.41
513 620 3.765381 TGTTGTGTCCATGATGTCCATT 58.235 40.909 0.00 0.00 31.94 3.16
514 621 4.151121 TGTTGTGTCCATGATGTCCATTT 58.849 39.130 0.00 0.00 31.94 2.32
515 622 5.320277 TGTTGTGTCCATGATGTCCATTTA 58.680 37.500 0.00 0.00 31.94 1.40
516 623 5.772169 TGTTGTGTCCATGATGTCCATTTAA 59.228 36.000 0.00 0.00 31.94 1.52
517 624 6.266330 TGTTGTGTCCATGATGTCCATTTAAA 59.734 34.615 0.00 0.00 31.94 1.52
518 625 6.907853 TGTGTCCATGATGTCCATTTAAAA 57.092 33.333 0.00 0.00 31.94 1.52
519 626 7.479352 TGTGTCCATGATGTCCATTTAAAAT 57.521 32.000 0.00 0.00 31.94 1.82
520 627 7.546358 TGTGTCCATGATGTCCATTTAAAATC 58.454 34.615 0.00 0.00 31.94 2.17
521 628 7.396907 TGTGTCCATGATGTCCATTTAAAATCT 59.603 33.333 0.00 0.00 31.94 2.40
522 629 7.917505 GTGTCCATGATGTCCATTTAAAATCTC 59.082 37.037 0.00 0.00 31.94 2.75
523 630 7.835682 TGTCCATGATGTCCATTTAAAATCTCT 59.164 33.333 0.00 0.00 31.94 3.10
524 631 9.342308 GTCCATGATGTCCATTTAAAATCTCTA 57.658 33.333 0.00 0.00 31.94 2.43
525 632 9.919416 TCCATGATGTCCATTTAAAATCTCTAA 57.081 29.630 0.00 0.00 31.94 2.10
550 657 8.801882 AAATGACAAATATTTAGGAACGGAGA 57.198 30.769 0.00 0.00 0.00 3.71
551 658 8.438676 AATGACAAATATTTAGGAACGGAGAG 57.561 34.615 0.00 0.00 0.00 3.20
552 659 7.177832 TGACAAATATTTAGGAACGGAGAGA 57.822 36.000 0.00 0.00 0.00 3.10
553 660 7.265673 TGACAAATATTTAGGAACGGAGAGAG 58.734 38.462 0.00 0.00 0.00 3.20
554 661 6.049790 ACAAATATTTAGGAACGGAGAGAGC 58.950 40.000 0.00 0.00 0.00 4.09
555 662 5.871396 AATATTTAGGAACGGAGAGAGCA 57.129 39.130 0.00 0.00 0.00 4.26
556 663 3.810310 ATTTAGGAACGGAGAGAGCAG 57.190 47.619 0.00 0.00 0.00 4.24
557 664 2.509166 TTAGGAACGGAGAGAGCAGA 57.491 50.000 0.00 0.00 0.00 4.26
558 665 2.738587 TAGGAACGGAGAGAGCAGAT 57.261 50.000 0.00 0.00 0.00 2.90
559 666 1.859302 AGGAACGGAGAGAGCAGATT 58.141 50.000 0.00 0.00 0.00 2.40
560 667 1.480137 AGGAACGGAGAGAGCAGATTG 59.520 52.381 0.00 0.00 0.00 2.67
561 668 1.205893 GGAACGGAGAGAGCAGATTGT 59.794 52.381 0.00 0.00 0.00 2.71
562 669 2.427453 GGAACGGAGAGAGCAGATTGTA 59.573 50.000 0.00 0.00 0.00 2.41
610 718 8.928733 CAAACCTGAAAACAAATCATGATTAGG 58.071 33.333 21.00 21.43 0.00 2.69
653 761 2.967076 CACGTGCACCGCAGTTCT 60.967 61.111 12.15 0.00 40.08 3.01
703 811 0.808755 CAGCCCGGGTTCAAATGTAC 59.191 55.000 24.63 0.00 0.00 2.90
704 812 0.696501 AGCCCGGGTTCAAATGTACT 59.303 50.000 24.63 2.79 0.00 2.73
705 813 1.074889 AGCCCGGGTTCAAATGTACTT 59.925 47.619 24.63 0.00 0.00 2.24
706 814 1.471287 GCCCGGGTTCAAATGTACTTC 59.529 52.381 24.63 0.00 0.00 3.01
707 815 2.089201 CCCGGGTTCAAATGTACTTCC 58.911 52.381 14.18 0.00 0.00 3.46
708 816 2.290705 CCCGGGTTCAAATGTACTTCCT 60.291 50.000 14.18 0.00 0.00 3.36
709 817 3.007635 CCGGGTTCAAATGTACTTCCTC 58.992 50.000 0.00 0.00 0.00 3.71
710 818 3.007635 CGGGTTCAAATGTACTTCCTCC 58.992 50.000 0.00 0.00 0.00 4.30
711 819 3.007635 GGGTTCAAATGTACTTCCTCCG 58.992 50.000 0.00 0.00 0.00 4.63
712 820 3.558533 GGGTTCAAATGTACTTCCTCCGT 60.559 47.826 0.00 0.00 0.00 4.69
713 821 4.070009 GGTTCAAATGTACTTCCTCCGTT 58.930 43.478 0.00 0.00 0.00 4.44
714 822 4.153655 GGTTCAAATGTACTTCCTCCGTTC 59.846 45.833 0.00 0.00 0.00 3.95
715 823 3.934068 TCAAATGTACTTCCTCCGTTCC 58.066 45.455 0.00 0.00 0.00 3.62
716 824 3.581332 TCAAATGTACTTCCTCCGTTCCT 59.419 43.478 0.00 0.00 0.00 3.36
717 825 4.773674 TCAAATGTACTTCCTCCGTTCCTA 59.226 41.667 0.00 0.00 0.00 2.94
718 826 5.246656 TCAAATGTACTTCCTCCGTTCCTAA 59.753 40.000 0.00 0.00 0.00 2.69
719 827 5.750352 AATGTACTTCCTCCGTTCCTAAA 57.250 39.130 0.00 0.00 0.00 1.85
720 828 5.952347 ATGTACTTCCTCCGTTCCTAAAT 57.048 39.130 0.00 0.00 0.00 1.40
721 829 7.427989 AATGTACTTCCTCCGTTCCTAAATA 57.572 36.000 0.00 0.00 0.00 1.40
722 830 7.613551 ATGTACTTCCTCCGTTCCTAAATAT 57.386 36.000 0.00 0.00 0.00 1.28
723 831 8.716674 ATGTACTTCCTCCGTTCCTAAATATA 57.283 34.615 0.00 0.00 0.00 0.86
724 832 8.537728 TGTACTTCCTCCGTTCCTAAATATAA 57.462 34.615 0.00 0.00 0.00 0.98
725 833 8.636213 TGTACTTCCTCCGTTCCTAAATATAAG 58.364 37.037 0.00 0.00 0.00 1.73
726 834 7.672122 ACTTCCTCCGTTCCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
727 835 8.087303 ACTTCCTCCGTTCCTAAATATAAGTT 57.913 34.615 0.00 0.00 0.00 2.66
728 836 8.546322 ACTTCCTCCGTTCCTAAATATAAGTTT 58.454 33.333 0.00 0.00 0.00 2.66
729 837 9.392259 CTTCCTCCGTTCCTAAATATAAGTTTT 57.608 33.333 0.00 0.00 0.00 2.43
730 838 9.743581 TTCCTCCGTTCCTAAATATAAGTTTTT 57.256 29.630 0.00 0.00 0.00 1.94
754 862 9.959749 TTTTTAGACATTTCAAATGGACTGTAC 57.040 29.630 14.70 0.00 0.00 2.90
755 863 5.862924 AGACATTTCAAATGGACTGTACG 57.137 39.130 14.70 0.00 0.00 3.67
756 864 5.305585 AGACATTTCAAATGGACTGTACGT 58.694 37.500 14.70 0.00 0.00 3.57
757 865 6.460781 AGACATTTCAAATGGACTGTACGTA 58.539 36.000 14.70 0.00 0.00 3.57
758 866 6.590292 AGACATTTCAAATGGACTGTACGTAG 59.410 38.462 14.70 0.00 0.00 3.51
759 867 6.460781 ACATTTCAAATGGACTGTACGTAGA 58.539 36.000 14.70 0.00 0.00 2.59
760 868 6.367969 ACATTTCAAATGGACTGTACGTAGAC 59.632 38.462 14.70 0.00 0.00 2.59
761 869 5.456548 TTCAAATGGACTGTACGTAGACA 57.543 39.130 0.00 0.00 0.00 3.41
762 870 5.654603 TCAAATGGACTGTACGTAGACAT 57.345 39.130 0.00 0.00 0.00 3.06
763 871 6.762702 TCAAATGGACTGTACGTAGACATA 57.237 37.500 0.00 0.00 0.00 2.29
764 872 7.342769 TCAAATGGACTGTACGTAGACATAT 57.657 36.000 0.00 0.00 0.00 1.78
765 873 7.778083 TCAAATGGACTGTACGTAGACATATT 58.222 34.615 0.00 0.00 0.00 1.28
766 874 8.255206 TCAAATGGACTGTACGTAGACATATTT 58.745 33.333 0.00 0.00 0.00 1.40
767 875 8.879759 CAAATGGACTGTACGTAGACATATTTT 58.120 33.333 0.00 0.00 0.00 1.82
769 877 9.745880 AATGGACTGTACGTAGACATATTTTAG 57.254 33.333 0.00 0.00 0.00 1.85
770 878 8.510243 TGGACTGTACGTAGACATATTTTAGA 57.490 34.615 0.00 0.00 0.00 2.10
771 879 8.959548 TGGACTGTACGTAGACATATTTTAGAA 58.040 33.333 0.00 0.00 0.00 2.10
772 880 9.962783 GGACTGTACGTAGACATATTTTAGAAT 57.037 33.333 0.00 0.00 0.00 2.40
798 906 8.623903 TGTAGATTCATTCATTTTACTCCATGC 58.376 33.333 0.00 0.00 0.00 4.06
799 907 6.732154 AGATTCATTCATTTTACTCCATGCG 58.268 36.000 0.00 0.00 0.00 4.73
800 908 5.895636 TTCATTCATTTTACTCCATGCGT 57.104 34.783 0.00 0.00 0.00 5.24
801 909 6.993786 TTCATTCATTTTACTCCATGCGTA 57.006 33.333 0.00 0.00 0.00 4.42
802 910 6.603237 TCATTCATTTTACTCCATGCGTAG 57.397 37.500 0.00 0.00 0.00 3.51
803 911 6.112734 TCATTCATTTTACTCCATGCGTAGT 58.887 36.000 0.00 0.00 0.00 2.73
804 912 6.257849 TCATTCATTTTACTCCATGCGTAGTC 59.742 38.462 0.00 0.00 0.00 2.59
805 913 5.079689 TCATTTTACTCCATGCGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
806 914 5.670485 TCATTTTACTCCATGCGTAGTCAT 58.330 37.500 0.00 0.00 0.00 3.06
807 915 6.112734 TCATTTTACTCCATGCGTAGTCATT 58.887 36.000 0.00 0.00 0.00 2.57
808 916 6.597672 TCATTTTACTCCATGCGTAGTCATTT 59.402 34.615 0.00 0.00 0.00 2.32
809 917 5.794687 TTTACTCCATGCGTAGTCATTTG 57.205 39.130 0.00 0.00 0.00 2.32
810 918 3.334583 ACTCCATGCGTAGTCATTTGT 57.665 42.857 0.00 0.00 0.00 2.83
811 919 3.674997 ACTCCATGCGTAGTCATTTGTT 58.325 40.909 0.00 0.00 0.00 2.83
812 920 3.436704 ACTCCATGCGTAGTCATTTGTTG 59.563 43.478 0.00 0.00 0.00 3.33
813 921 3.669536 TCCATGCGTAGTCATTTGTTGA 58.330 40.909 0.00 0.00 0.00 3.18
814 922 4.068599 TCCATGCGTAGTCATTTGTTGAA 58.931 39.130 0.00 0.00 35.70 2.69
815 923 4.517075 TCCATGCGTAGTCATTTGTTGAAA 59.483 37.500 0.00 0.00 35.70 2.69
816 924 4.616802 CCATGCGTAGTCATTTGTTGAAAC 59.383 41.667 0.00 0.00 35.70 2.78
817 925 5.451908 CATGCGTAGTCATTTGTTGAAACT 58.548 37.500 0.00 0.00 35.70 2.66
818 926 5.493133 TGCGTAGTCATTTGTTGAAACTT 57.507 34.783 0.00 0.00 35.70 2.66
819 927 6.606234 TGCGTAGTCATTTGTTGAAACTTA 57.394 33.333 0.00 0.00 35.70 2.24
820 928 7.197071 TGCGTAGTCATTTGTTGAAACTTAT 57.803 32.000 0.00 0.00 35.70 1.73
821 929 8.312896 TGCGTAGTCATTTGTTGAAACTTATA 57.687 30.769 0.00 0.00 35.70 0.98
822 930 8.941977 TGCGTAGTCATTTGTTGAAACTTATAT 58.058 29.630 0.00 0.00 35.70 0.86
823 931 9.769093 GCGTAGTCATTTGTTGAAACTTATATT 57.231 29.630 0.00 0.00 35.70 1.28
835 943 9.983804 GTTGAAACTTATATTTAAGAACGGAGG 57.016 33.333 9.58 0.00 38.56 4.30
836 944 8.726870 TGAAACTTATATTTAAGAACGGAGGG 57.273 34.615 9.58 0.00 38.56 4.30
837 945 8.542080 TGAAACTTATATTTAAGAACGGAGGGA 58.458 33.333 9.58 0.00 38.56 4.20
838 946 8.959705 AAACTTATATTTAAGAACGGAGGGAG 57.040 34.615 9.58 0.00 38.56 4.30
839 947 7.672122 ACTTATATTTAAGAACGGAGGGAGT 57.328 36.000 9.58 0.00 38.56 3.85
840 948 8.773033 ACTTATATTTAAGAACGGAGGGAGTA 57.227 34.615 9.58 0.00 38.56 2.59
923 1034 1.078918 TGGAGCAAGCATCCAGACG 60.079 57.895 8.51 0.00 41.96 4.18
983 1094 1.915266 CTGGGTGTGGCTGGAGAGA 60.915 63.158 0.00 0.00 0.00 3.10
1397 1545 1.423794 ATGGTGGTCCGTCTTGGGTT 61.424 55.000 0.00 0.00 38.76 4.11
1398 1546 1.599797 GGTGGTCCGTCTTGGGTTG 60.600 63.158 0.00 0.00 38.76 3.77
1399 1547 2.112297 TGGTCCGTCTTGGGTTGC 59.888 61.111 0.00 0.00 38.76 4.17
1676 1825 2.093235 AGTTGGGTATGCTCTTGAGCTC 60.093 50.000 21.17 6.82 35.49 4.09
1738 1887 4.943705 ACATTTTGGTGTGCTATCCAGTAG 59.056 41.667 0.00 0.00 35.05 2.57
1813 1962 4.071423 CAGATCTCCGAGAAGATAGAGCA 58.929 47.826 1.27 0.00 36.13 4.26
2041 2192 5.851720 TCTGCTGCATCCAAACAATAAAAA 58.148 33.333 1.31 0.00 0.00 1.94
2071 2222 7.159372 TGGGATTTCAAAGAGTTCTAGTACAC 58.841 38.462 2.11 0.00 0.00 2.90
2278 2429 1.232119 AACCAATCACCGGTCGTTTC 58.768 50.000 2.59 0.00 34.99 2.78
2336 2487 0.523335 CCGCTTCATTTTGTAGGCGC 60.523 55.000 0.00 0.00 41.03 6.53
2385 2536 2.494059 AGTCGAGAACAACATTGTGGG 58.506 47.619 0.00 0.00 41.31 4.61
2453 2637 2.295885 GCTAGCACCTAGACGGAACTA 58.704 52.381 10.63 0.00 36.26 2.24
2483 2667 2.191908 TGCACTGTGGTGTGGACC 59.808 61.111 10.21 0.00 44.65 4.46
2667 2857 3.101643 AGGTTTCTGCCTATTTTCCCC 57.898 47.619 0.00 0.00 37.04 4.81
2787 2980 7.440255 TCCAGCACAACTTAGTTTTTCTAGTAC 59.560 37.037 0.00 0.00 0.00 2.73
2924 3117 1.534163 CGTCCTTCTCGGCGTGATATA 59.466 52.381 12.79 0.00 0.00 0.86
3113 3306 5.491982 ACTGAACCATCCTTCATGACTTAC 58.508 41.667 0.00 0.00 33.80 2.34
3281 3474 2.879103 ACCACCACTAACCATCCTTG 57.121 50.000 0.00 0.00 0.00 3.61
3297 3490 1.102154 CTTGGCACCAGTCACAACAA 58.898 50.000 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.588648 GGAATATCAAACGGAGTCCAAATGA 59.411 40.000 10.49 9.88 45.00 2.57
1 2 5.590259 AGGAATATCAAACGGAGTCCAAATG 59.410 40.000 10.49 4.39 45.00 2.32
2 3 5.755849 AGGAATATCAAACGGAGTCCAAAT 58.244 37.500 10.49 0.00 45.00 2.32
4 5 4.837093 AGGAATATCAAACGGAGTCCAA 57.163 40.909 10.49 0.00 45.00 3.53
5 6 4.837093 AAGGAATATCAAACGGAGTCCA 57.163 40.909 10.49 0.00 45.00 4.02
6 7 5.880887 AGAAAAGGAATATCAAACGGAGTCC 59.119 40.000 0.00 0.00 45.00 3.85
7 8 6.371825 ACAGAAAAGGAATATCAAACGGAGTC 59.628 38.462 0.00 0.00 45.00 3.36
9 10 6.743575 ACAGAAAAGGAATATCAAACGGAG 57.256 37.500 0.00 0.00 0.00 4.63
11 12 9.124807 GTTTTACAGAAAAGGAATATCAAACGG 57.875 33.333 0.00 0.00 35.21 4.44
12 13 9.893305 AGTTTTACAGAAAAGGAATATCAAACG 57.107 29.630 0.00 0.00 35.21 3.60
20 21 9.936759 TGTTTTTGAGTTTTACAGAAAAGGAAT 57.063 25.926 0.00 0.00 35.21 3.01
21 22 9.765795 TTGTTTTTGAGTTTTACAGAAAAGGAA 57.234 25.926 0.00 0.00 35.21 3.36
22 23 9.765795 TTTGTTTTTGAGTTTTACAGAAAAGGA 57.234 25.926 0.00 0.00 35.21 3.36
25 26 9.765795 TCCTTTGTTTTTGAGTTTTACAGAAAA 57.234 25.926 0.00 0.00 32.00 2.29
26 27 9.765795 TTCCTTTGTTTTTGAGTTTTACAGAAA 57.234 25.926 0.00 0.00 0.00 2.52
27 28 9.765795 TTTCCTTTGTTTTTGAGTTTTACAGAA 57.234 25.926 0.00 0.00 0.00 3.02
28 29 9.765795 TTTTCCTTTGTTTTTGAGTTTTACAGA 57.234 25.926 0.00 0.00 0.00 3.41
33 34 9.114952 TCTGTTTTTCCTTTGTTTTTGAGTTTT 57.885 25.926 0.00 0.00 0.00 2.43
34 35 8.669946 TCTGTTTTTCCTTTGTTTTTGAGTTT 57.330 26.923 0.00 0.00 0.00 2.66
35 36 8.669946 TTCTGTTTTTCCTTTGTTTTTGAGTT 57.330 26.923 0.00 0.00 0.00 3.01
36 37 8.556194 GTTTCTGTTTTTCCTTTGTTTTTGAGT 58.444 29.630 0.00 0.00 0.00 3.41
37 38 8.773645 AGTTTCTGTTTTTCCTTTGTTTTTGAG 58.226 29.630 0.00 0.00 0.00 3.02
38 39 8.669946 AGTTTCTGTTTTTCCTTTGTTTTTGA 57.330 26.923 0.00 0.00 0.00 2.69
39 40 9.168353 CAAGTTTCTGTTTTTCCTTTGTTTTTG 57.832 29.630 0.00 0.00 0.00 2.44
40 41 7.860373 GCAAGTTTCTGTTTTTCCTTTGTTTTT 59.140 29.630 0.00 0.00 0.00 1.94
41 42 7.012799 TGCAAGTTTCTGTTTTTCCTTTGTTTT 59.987 29.630 0.00 0.00 0.00 2.43
42 43 6.484977 TGCAAGTTTCTGTTTTTCCTTTGTTT 59.515 30.769 0.00 0.00 0.00 2.83
43 44 5.994668 TGCAAGTTTCTGTTTTTCCTTTGTT 59.005 32.000 0.00 0.00 0.00 2.83
44 45 5.408299 GTGCAAGTTTCTGTTTTTCCTTTGT 59.592 36.000 0.00 0.00 0.00 2.83
45 46 5.639082 AGTGCAAGTTTCTGTTTTTCCTTTG 59.361 36.000 0.00 0.00 0.00 2.77
46 47 5.639082 CAGTGCAAGTTTCTGTTTTTCCTTT 59.361 36.000 0.00 0.00 0.00 3.11
47 48 5.170748 CAGTGCAAGTTTCTGTTTTTCCTT 58.829 37.500 0.00 0.00 0.00 3.36
48 49 4.381932 CCAGTGCAAGTTTCTGTTTTTCCT 60.382 41.667 0.00 0.00 0.00 3.36
49 50 3.865164 CCAGTGCAAGTTTCTGTTTTTCC 59.135 43.478 0.00 0.00 0.00 3.13
50 51 3.865164 CCCAGTGCAAGTTTCTGTTTTTC 59.135 43.478 0.00 0.00 0.00 2.29
51 52 3.860641 CCCAGTGCAAGTTTCTGTTTTT 58.139 40.909 0.00 0.00 0.00 1.94
52 53 2.418609 GCCCAGTGCAAGTTTCTGTTTT 60.419 45.455 0.00 0.00 40.77 2.43
53 54 1.136891 GCCCAGTGCAAGTTTCTGTTT 59.863 47.619 0.00 0.00 40.77 2.83
54 55 0.746659 GCCCAGTGCAAGTTTCTGTT 59.253 50.000 0.00 0.00 40.77 3.16
55 56 0.106519 AGCCCAGTGCAAGTTTCTGT 60.107 50.000 0.00 0.00 44.83 3.41
56 57 0.595095 GAGCCCAGTGCAAGTTTCTG 59.405 55.000 0.00 0.00 44.83 3.02
57 58 0.475906 AGAGCCCAGTGCAAGTTTCT 59.524 50.000 0.00 0.00 44.83 2.52
58 59 2.079925 CTAGAGCCCAGTGCAAGTTTC 58.920 52.381 0.00 0.00 44.83 2.78
59 60 1.271597 CCTAGAGCCCAGTGCAAGTTT 60.272 52.381 0.00 0.00 44.83 2.66
60 61 0.326264 CCTAGAGCCCAGTGCAAGTT 59.674 55.000 0.00 0.00 44.83 2.66
61 62 0.838122 ACCTAGAGCCCAGTGCAAGT 60.838 55.000 0.00 0.00 44.83 3.16
62 63 0.326264 AACCTAGAGCCCAGTGCAAG 59.674 55.000 0.00 0.00 44.83 4.01
63 64 1.651737 TAACCTAGAGCCCAGTGCAA 58.348 50.000 0.00 0.00 44.83 4.08
64 65 1.651737 TTAACCTAGAGCCCAGTGCA 58.348 50.000 0.00 0.00 44.83 4.57
65 66 3.244249 CCTATTAACCTAGAGCCCAGTGC 60.244 52.174 0.00 0.00 41.71 4.40
66 67 3.967987 ACCTATTAACCTAGAGCCCAGTG 59.032 47.826 0.00 0.00 0.00 3.66
67 68 4.282292 ACCTATTAACCTAGAGCCCAGT 57.718 45.455 0.00 0.00 0.00 4.00
68 69 5.839606 ACTAACCTATTAACCTAGAGCCCAG 59.160 44.000 0.00 0.00 0.00 4.45
69 70 5.785123 ACTAACCTATTAACCTAGAGCCCA 58.215 41.667 0.00 0.00 0.00 5.36
70 71 5.245751 GGACTAACCTATTAACCTAGAGCCC 59.754 48.000 0.00 0.00 35.41 5.19
71 72 5.245751 GGGACTAACCTATTAACCTAGAGCC 59.754 48.000 0.00 0.00 38.98 4.70
72 73 5.837438 TGGGACTAACCTATTAACCTAGAGC 59.163 44.000 0.00 0.00 38.98 4.09
73 74 7.909485 TTGGGACTAACCTATTAACCTAGAG 57.091 40.000 0.00 0.00 38.98 2.43
74 75 8.683776 TTTTGGGACTAACCTATTAACCTAGA 57.316 34.615 0.00 0.00 38.98 2.43
75 76 9.916360 ATTTTTGGGACTAACCTATTAACCTAG 57.084 33.333 0.00 0.00 38.98 3.02
76 77 9.910267 GATTTTTGGGACTAACCTATTAACCTA 57.090 33.333 0.00 0.00 38.98 3.08
77 78 8.395605 TGATTTTTGGGACTAACCTATTAACCT 58.604 33.333 0.00 0.00 38.98 3.50
78 79 8.584063 TGATTTTTGGGACTAACCTATTAACC 57.416 34.615 0.00 0.00 38.98 2.85
184 185 1.202268 CCGGTCTGATACGTCTCCAAC 60.202 57.143 0.00 0.00 0.00 3.77
185 186 1.100510 CCGGTCTGATACGTCTCCAA 58.899 55.000 0.00 0.00 0.00 3.53
186 187 0.034767 ACCGGTCTGATACGTCTCCA 60.035 55.000 0.00 0.00 0.00 3.86
187 188 0.381089 CACCGGTCTGATACGTCTCC 59.619 60.000 2.59 0.00 0.00 3.71
188 189 1.063764 GACACCGGTCTGATACGTCTC 59.936 57.143 2.59 0.00 40.99 3.36
189 190 1.093159 GACACCGGTCTGATACGTCT 58.907 55.000 2.59 0.00 40.99 4.18
190 191 0.247974 CGACACCGGTCTGATACGTC 60.248 60.000 2.59 6.51 42.05 4.34
191 192 1.798735 CGACACCGGTCTGATACGT 59.201 57.895 2.59 0.00 42.05 3.57
192 193 4.684265 CGACACCGGTCTGATACG 57.316 61.111 2.59 0.32 42.05 3.06
202 203 3.411351 CGCCTTTGACCGACACCG 61.411 66.667 0.00 0.00 0.00 4.94
203 204 3.723348 GCGCCTTTGACCGACACC 61.723 66.667 0.00 0.00 0.00 4.16
204 205 3.723348 GGCGCCTTTGACCGACAC 61.723 66.667 22.15 0.00 31.50 3.67
205 206 3.469863 AAGGCGCCTTTGACCGACA 62.470 57.895 35.84 0.00 34.21 4.35
206 207 2.668550 AAGGCGCCTTTGACCGAC 60.669 61.111 35.84 0.00 31.29 4.79
207 208 2.668212 CAAGGCGCCTTTGACCGA 60.668 61.111 38.60 0.00 33.42 4.69
238 239 2.499520 CGCCACATTTGCACGTCG 60.500 61.111 0.00 0.00 0.00 5.12
239 240 2.731587 AAGCGCCACATTTGCACGTC 62.732 55.000 2.29 0.00 0.00 4.34
240 241 1.511318 TAAGCGCCACATTTGCACGT 61.511 50.000 2.29 0.00 0.00 4.49
241 242 0.386605 TTAAGCGCCACATTTGCACG 60.387 50.000 2.29 0.00 0.00 5.34
242 243 1.059942 GTTAAGCGCCACATTTGCAC 58.940 50.000 2.29 0.00 0.00 4.57
243 244 0.386605 CGTTAAGCGCCACATTTGCA 60.387 50.000 2.29 0.00 0.00 4.08
244 245 1.070471 CCGTTAAGCGCCACATTTGC 61.070 55.000 2.29 0.00 39.71 3.68
245 246 1.070471 GCCGTTAAGCGCCACATTTG 61.070 55.000 2.29 0.00 39.71 2.32
247 248 2.696759 GGCCGTTAAGCGCCACATT 61.697 57.895 2.29 0.00 39.71 2.71
248 249 3.131478 GGCCGTTAAGCGCCACAT 61.131 61.111 2.29 0.00 39.71 3.21
257 258 1.015085 CATTCACGTCGGGCCGTTAA 61.015 55.000 27.32 13.86 39.45 2.01
268 269 0.109873 GTCGTCGGACTCATTCACGT 60.110 55.000 6.57 0.00 40.15 4.49
271 272 0.876399 TTCGTCGTCGGACTCATTCA 59.124 50.000 6.57 0.00 41.16 2.57
277 278 3.565905 AACTTATTTCGTCGTCGGACT 57.434 42.857 6.57 0.00 41.16 3.85
281 282 5.070862 CCTCAAAAACTTATTTCGTCGTCG 58.929 41.667 0.00 0.00 38.55 5.12
314 315 3.091545 TCCCTGGACGTACTTATTTCGT 58.908 45.455 0.00 0.00 40.49 3.85
370 477 0.535335 GGGAGTAGAATGCACGGACA 59.465 55.000 0.00 0.00 0.00 4.02
385 492 7.048512 AGACAAATATTTAGAAACGGAGGGAG 58.951 38.462 0.00 0.00 0.00 4.30
386 493 6.954232 AGACAAATATTTAGAAACGGAGGGA 58.046 36.000 0.00 0.00 0.00 4.20
387 494 7.625828 AAGACAAATATTTAGAAACGGAGGG 57.374 36.000 0.00 0.00 0.00 4.30
388 495 9.908152 AAAAAGACAAATATTTAGAAACGGAGG 57.092 29.630 0.00 0.00 0.00 4.30
403 510 9.898152 TTTGTTGAAATCCCTAAAAAGACAAAT 57.102 25.926 0.00 0.00 30.93 2.32
404 511 9.898152 ATTTGTTGAAATCCCTAAAAAGACAAA 57.102 25.926 0.00 0.00 37.57 2.83
405 512 9.323985 CATTTGTTGAAATCCCTAAAAAGACAA 57.676 29.630 0.00 0.00 28.65 3.18
406 513 8.700051 TCATTTGTTGAAATCCCTAAAAAGACA 58.300 29.630 0.00 0.00 28.65 3.41
407 514 8.978539 GTCATTTGTTGAAATCCCTAAAAAGAC 58.021 33.333 0.00 0.00 35.70 3.01
408 515 8.923270 AGTCATTTGTTGAAATCCCTAAAAAGA 58.077 29.630 0.00 0.00 35.70 2.52
410 517 9.974980 GTAGTCATTTGTTGAAATCCCTAAAAA 57.025 29.630 0.00 0.00 35.70 1.94
411 518 9.137459 TGTAGTCATTTGTTGAAATCCCTAAAA 57.863 29.630 0.00 0.00 35.70 1.52
412 519 8.698973 TGTAGTCATTTGTTGAAATCCCTAAA 57.301 30.769 0.00 0.00 35.70 1.85
413 520 8.877864 ATGTAGTCATTTGTTGAAATCCCTAA 57.122 30.769 0.00 0.00 35.70 2.69
414 521 9.391006 GTATGTAGTCATTTGTTGAAATCCCTA 57.609 33.333 0.00 0.00 35.70 3.53
415 522 7.065803 CGTATGTAGTCATTTGTTGAAATCCCT 59.934 37.037 0.00 0.00 35.70 4.20
416 523 7.065324 TCGTATGTAGTCATTTGTTGAAATCCC 59.935 37.037 0.00 0.00 35.70 3.85
417 524 7.970384 TCGTATGTAGTCATTTGTTGAAATCC 58.030 34.615 0.00 0.00 35.70 3.01
418 525 9.478019 CTTCGTATGTAGTCATTTGTTGAAATC 57.522 33.333 0.00 0.00 35.70 2.17
419 526 8.999431 ACTTCGTATGTAGTCATTTGTTGAAAT 58.001 29.630 0.00 0.00 35.70 2.17
420 527 8.373048 ACTTCGTATGTAGTCATTTGTTGAAA 57.627 30.769 0.00 0.00 35.70 2.69
421 528 7.654116 TGACTTCGTATGTAGTCATTTGTTGAA 59.346 33.333 17.60 0.00 44.49 2.69
422 529 7.149307 TGACTTCGTATGTAGTCATTTGTTGA 58.851 34.615 17.60 0.00 44.49 3.18
423 530 7.346208 TGACTTCGTATGTAGTCATTTGTTG 57.654 36.000 17.60 0.00 44.49 3.33
430 537 6.806739 CACTCATTTGACTTCGTATGTAGTCA 59.193 38.462 17.60 17.60 46.70 3.41
431 538 7.027760 TCACTCATTTGACTTCGTATGTAGTC 58.972 38.462 13.27 13.27 41.43 2.59
432 539 6.920817 TCACTCATTTGACTTCGTATGTAGT 58.079 36.000 0.00 0.00 0.00 2.73
433 540 7.812309 TTCACTCATTTGACTTCGTATGTAG 57.188 36.000 0.00 0.00 0.00 2.74
434 541 8.251026 AGATTCACTCATTTGACTTCGTATGTA 58.749 33.333 0.00 0.00 0.00 2.29
435 542 7.099764 AGATTCACTCATTTGACTTCGTATGT 58.900 34.615 0.00 0.00 0.00 2.29
436 543 7.531280 AGATTCACTCATTTGACTTCGTATG 57.469 36.000 0.00 0.00 0.00 2.39
437 544 9.254133 CATAGATTCACTCATTTGACTTCGTAT 57.746 33.333 0.00 0.00 0.00 3.06
438 545 7.222805 GCATAGATTCACTCATTTGACTTCGTA 59.777 37.037 0.00 0.00 0.00 3.43
439 546 6.036517 GCATAGATTCACTCATTTGACTTCGT 59.963 38.462 0.00 0.00 0.00 3.85
440 547 6.257411 AGCATAGATTCACTCATTTGACTTCG 59.743 38.462 0.00 0.00 0.00 3.79
441 548 7.495279 AGAGCATAGATTCACTCATTTGACTTC 59.505 37.037 0.00 0.00 0.00 3.01
442 549 7.337167 AGAGCATAGATTCACTCATTTGACTT 58.663 34.615 0.00 0.00 0.00 3.01
443 550 6.887013 AGAGCATAGATTCACTCATTTGACT 58.113 36.000 0.00 0.00 0.00 3.41
444 551 8.654230 TTAGAGCATAGATTCACTCATTTGAC 57.346 34.615 0.00 0.00 0.00 3.18
445 552 9.671279 TTTTAGAGCATAGATTCACTCATTTGA 57.329 29.630 0.00 0.00 0.00 2.69
481 588 8.789762 CATCATGGACACAACATATGAATGTAT 58.210 33.333 10.38 3.29 45.79 2.29
482 589 7.774625 ACATCATGGACACAACATATGAATGTA 59.225 33.333 10.38 0.06 45.79 2.29
484 591 7.034685 ACATCATGGACACAACATATGAATG 57.965 36.000 10.38 10.39 39.17 2.67
485 592 6.263842 GGACATCATGGACACAACATATGAAT 59.736 38.462 10.38 0.00 32.21 2.57
486 593 5.589855 GGACATCATGGACACAACATATGAA 59.410 40.000 10.38 0.00 32.21 2.57
487 594 5.125356 GGACATCATGGACACAACATATGA 58.875 41.667 10.38 0.00 32.90 2.15
488 595 4.883006 TGGACATCATGGACACAACATATG 59.117 41.667 0.00 0.00 0.00 1.78
489 596 5.114764 TGGACATCATGGACACAACATAT 57.885 39.130 0.00 0.00 0.00 1.78
490 597 4.566426 TGGACATCATGGACACAACATA 57.434 40.909 0.00 0.00 0.00 2.29
491 598 3.438216 TGGACATCATGGACACAACAT 57.562 42.857 0.00 0.00 0.00 2.71
492 599 2.947127 TGGACATCATGGACACAACA 57.053 45.000 0.00 0.00 0.00 3.33
493 600 4.789012 AAATGGACATCATGGACACAAC 57.211 40.909 0.00 0.00 35.99 3.32
494 601 6.907853 TTTAAATGGACATCATGGACACAA 57.092 33.333 0.00 0.00 35.99 3.33
495 602 6.907853 TTTTAAATGGACATCATGGACACA 57.092 33.333 0.00 0.00 35.99 3.72
496 603 7.775120 AGATTTTAAATGGACATCATGGACAC 58.225 34.615 0.00 0.00 35.99 3.67
497 604 7.835682 AGAGATTTTAAATGGACATCATGGACA 59.164 33.333 0.00 0.00 35.99 4.02
498 605 8.230472 AGAGATTTTAAATGGACATCATGGAC 57.770 34.615 0.00 0.00 35.99 4.02
499 606 9.919416 TTAGAGATTTTAAATGGACATCATGGA 57.081 29.630 0.00 0.00 35.99 3.41
524 631 9.238368 TCTCCGTTCCTAAATATTTGTCATTTT 57.762 29.630 11.05 0.00 0.00 1.82
525 632 8.801882 TCTCCGTTCCTAAATATTTGTCATTT 57.198 30.769 11.05 0.00 0.00 2.32
526 633 8.265055 TCTCTCCGTTCCTAAATATTTGTCATT 58.735 33.333 11.05 0.00 0.00 2.57
527 634 7.792032 TCTCTCCGTTCCTAAATATTTGTCAT 58.208 34.615 11.05 0.00 0.00 3.06
528 635 7.177832 TCTCTCCGTTCCTAAATATTTGTCA 57.822 36.000 11.05 0.00 0.00 3.58
529 636 6.201234 GCTCTCTCCGTTCCTAAATATTTGTC 59.799 42.308 11.05 0.00 0.00 3.18
530 637 6.049790 GCTCTCTCCGTTCCTAAATATTTGT 58.950 40.000 11.05 0.00 0.00 2.83
531 638 6.049149 TGCTCTCTCCGTTCCTAAATATTTG 58.951 40.000 11.05 1.40 0.00 2.32
532 639 6.098409 TCTGCTCTCTCCGTTCCTAAATATTT 59.902 38.462 5.89 5.89 0.00 1.40
533 640 5.598830 TCTGCTCTCTCCGTTCCTAAATATT 59.401 40.000 0.00 0.00 0.00 1.28
534 641 5.141182 TCTGCTCTCTCCGTTCCTAAATAT 58.859 41.667 0.00 0.00 0.00 1.28
535 642 4.533815 TCTGCTCTCTCCGTTCCTAAATA 58.466 43.478 0.00 0.00 0.00 1.40
536 643 3.366396 TCTGCTCTCTCCGTTCCTAAAT 58.634 45.455 0.00 0.00 0.00 1.40
537 644 2.803956 TCTGCTCTCTCCGTTCCTAAA 58.196 47.619 0.00 0.00 0.00 1.85
538 645 2.509166 TCTGCTCTCTCCGTTCCTAA 57.491 50.000 0.00 0.00 0.00 2.69
539 646 2.690497 CAATCTGCTCTCTCCGTTCCTA 59.310 50.000 0.00 0.00 0.00 2.94
540 647 1.480137 CAATCTGCTCTCTCCGTTCCT 59.520 52.381 0.00 0.00 0.00 3.36
541 648 1.205893 ACAATCTGCTCTCTCCGTTCC 59.794 52.381 0.00 0.00 0.00 3.62
542 649 2.663826 ACAATCTGCTCTCTCCGTTC 57.336 50.000 0.00 0.00 0.00 3.95
543 650 3.673594 CGTTACAATCTGCTCTCTCCGTT 60.674 47.826 0.00 0.00 0.00 4.44
544 651 2.159366 CGTTACAATCTGCTCTCTCCGT 60.159 50.000 0.00 0.00 0.00 4.69
545 652 2.455032 CGTTACAATCTGCTCTCTCCG 58.545 52.381 0.00 0.00 0.00 4.63
546 653 2.482142 CCCGTTACAATCTGCTCTCTCC 60.482 54.545 0.00 0.00 0.00 3.71
547 654 2.482142 CCCCGTTACAATCTGCTCTCTC 60.482 54.545 0.00 0.00 0.00 3.20
548 655 1.482593 CCCCGTTACAATCTGCTCTCT 59.517 52.381 0.00 0.00 0.00 3.10
549 656 1.480954 TCCCCGTTACAATCTGCTCTC 59.519 52.381 0.00 0.00 0.00 3.20
550 657 1.568504 TCCCCGTTACAATCTGCTCT 58.431 50.000 0.00 0.00 0.00 4.09
551 658 2.622064 ATCCCCGTTACAATCTGCTC 57.378 50.000 0.00 0.00 0.00 4.26
552 659 2.368875 CCTATCCCCGTTACAATCTGCT 59.631 50.000 0.00 0.00 0.00 4.24
553 660 2.367567 TCCTATCCCCGTTACAATCTGC 59.632 50.000 0.00 0.00 0.00 4.26
554 661 4.891992 ATCCTATCCCCGTTACAATCTG 57.108 45.455 0.00 0.00 0.00 2.90
555 662 5.024118 CCTATCCTATCCCCGTTACAATCT 58.976 45.833 0.00 0.00 0.00 2.40
556 663 5.021458 TCCTATCCTATCCCCGTTACAATC 58.979 45.833 0.00 0.00 0.00 2.67
557 664 5.019657 TCCTATCCTATCCCCGTTACAAT 57.980 43.478 0.00 0.00 0.00 2.71
558 665 4.106825 TCTCCTATCCTATCCCCGTTACAA 59.893 45.833 0.00 0.00 0.00 2.41
559 666 3.659195 TCTCCTATCCTATCCCCGTTACA 59.341 47.826 0.00 0.00 0.00 2.41
560 667 4.313020 TCTCCTATCCTATCCCCGTTAC 57.687 50.000 0.00 0.00 0.00 2.50
561 668 4.079327 GGATCTCCTATCCTATCCCCGTTA 60.079 50.000 0.00 0.00 35.36 3.18
562 669 3.309994 GGATCTCCTATCCTATCCCCGTT 60.310 52.174 0.00 0.00 35.36 4.44
610 718 1.081108 ACTCTCAACGCGTCTCTGC 60.081 57.895 14.44 0.00 0.00 4.26
653 761 7.602265 GCCAAGATTCTGCTTTTAATGGTAAAA 59.398 33.333 0.00 0.00 36.95 1.52
703 811 8.959705 AAACTTATATTTAGGAACGGAGGAAG 57.040 34.615 0.00 0.00 0.00 3.46
704 812 9.743581 AAAAACTTATATTTAGGAACGGAGGAA 57.256 29.630 0.00 0.00 0.00 3.36
728 836 9.959749 GTACAGTCCATTTGAAATGTCTAAAAA 57.040 29.630 15.93 0.00 0.00 1.94
729 837 8.286800 CGTACAGTCCATTTGAAATGTCTAAAA 58.713 33.333 15.93 0.00 0.00 1.52
730 838 7.442969 ACGTACAGTCCATTTGAAATGTCTAAA 59.557 33.333 15.93 4.28 0.00 1.85
731 839 6.932400 ACGTACAGTCCATTTGAAATGTCTAA 59.068 34.615 15.93 4.55 0.00 2.10
732 840 6.460781 ACGTACAGTCCATTTGAAATGTCTA 58.539 36.000 15.93 0.00 0.00 2.59
733 841 5.305585 ACGTACAGTCCATTTGAAATGTCT 58.694 37.500 15.93 10.97 0.00 3.41
734 842 5.607119 ACGTACAGTCCATTTGAAATGTC 57.393 39.130 15.93 9.10 0.00 3.06
735 843 6.367969 GTCTACGTACAGTCCATTTGAAATGT 59.632 38.462 15.93 2.09 0.00 2.71
736 844 6.367695 TGTCTACGTACAGTCCATTTGAAATG 59.632 38.462 10.84 10.84 0.00 2.32
737 845 6.460781 TGTCTACGTACAGTCCATTTGAAAT 58.539 36.000 0.00 0.00 0.00 2.17
738 846 5.845103 TGTCTACGTACAGTCCATTTGAAA 58.155 37.500 0.00 0.00 0.00 2.69
739 847 5.456548 TGTCTACGTACAGTCCATTTGAA 57.543 39.130 0.00 0.00 0.00 2.69
740 848 5.654603 ATGTCTACGTACAGTCCATTTGA 57.345 39.130 0.00 0.00 31.70 2.69
741 849 8.420374 AAATATGTCTACGTACAGTCCATTTG 57.580 34.615 0.00 0.00 31.70 2.32
743 851 9.745880 CTAAAATATGTCTACGTACAGTCCATT 57.254 33.333 0.00 0.00 31.70 3.16
744 852 9.128404 TCTAAAATATGTCTACGTACAGTCCAT 57.872 33.333 0.00 0.00 31.70 3.41
745 853 8.510243 TCTAAAATATGTCTACGTACAGTCCA 57.490 34.615 0.00 0.00 31.70 4.02
746 854 9.962783 ATTCTAAAATATGTCTACGTACAGTCC 57.037 33.333 0.00 0.00 31.70 3.85
772 880 8.623903 GCATGGAGTAAAATGAATGAATCTACA 58.376 33.333 0.00 0.00 0.00 2.74
773 881 7.800380 CGCATGGAGTAAAATGAATGAATCTAC 59.200 37.037 0.00 0.00 0.00 2.59
774 882 7.498900 ACGCATGGAGTAAAATGAATGAATCTA 59.501 33.333 0.00 0.00 0.00 1.98
775 883 6.319658 ACGCATGGAGTAAAATGAATGAATCT 59.680 34.615 0.00 0.00 0.00 2.40
776 884 6.498304 ACGCATGGAGTAAAATGAATGAATC 58.502 36.000 0.00 0.00 0.00 2.52
777 885 6.455360 ACGCATGGAGTAAAATGAATGAAT 57.545 33.333 0.00 0.00 0.00 2.57
778 886 5.895636 ACGCATGGAGTAAAATGAATGAA 57.104 34.783 0.00 0.00 0.00 2.57
779 887 6.112734 ACTACGCATGGAGTAAAATGAATGA 58.887 36.000 0.00 0.00 0.00 2.57
780 888 6.037062 TGACTACGCATGGAGTAAAATGAATG 59.963 38.462 0.00 0.00 0.00 2.67
781 889 6.112734 TGACTACGCATGGAGTAAAATGAAT 58.887 36.000 0.00 0.00 0.00 2.57
782 890 5.483811 TGACTACGCATGGAGTAAAATGAA 58.516 37.500 0.00 0.00 0.00 2.57
783 891 5.079689 TGACTACGCATGGAGTAAAATGA 57.920 39.130 0.00 0.00 0.00 2.57
784 892 5.991328 ATGACTACGCATGGAGTAAAATG 57.009 39.130 0.00 0.00 0.00 2.32
785 893 6.374333 ACAAATGACTACGCATGGAGTAAAAT 59.626 34.615 0.00 0.00 0.00 1.82
786 894 5.703592 ACAAATGACTACGCATGGAGTAAAA 59.296 36.000 0.00 0.00 0.00 1.52
787 895 5.242434 ACAAATGACTACGCATGGAGTAAA 58.758 37.500 0.00 0.00 0.00 2.01
788 896 4.827692 ACAAATGACTACGCATGGAGTAA 58.172 39.130 0.00 0.00 0.00 2.24
789 897 4.465632 ACAAATGACTACGCATGGAGTA 57.534 40.909 0.00 0.00 0.00 2.59
790 898 3.334583 ACAAATGACTACGCATGGAGT 57.665 42.857 0.00 0.00 0.00 3.85
791 899 3.684305 TCAACAAATGACTACGCATGGAG 59.316 43.478 0.00 0.00 31.50 3.86
792 900 3.669536 TCAACAAATGACTACGCATGGA 58.330 40.909 0.00 0.00 31.50 3.41
793 901 4.418013 TTCAACAAATGACTACGCATGG 57.582 40.909 0.00 0.00 37.92 3.66
794 902 5.451908 AGTTTCAACAAATGACTACGCATG 58.548 37.500 0.00 0.00 37.92 4.06
795 903 5.689383 AGTTTCAACAAATGACTACGCAT 57.311 34.783 0.00 0.00 37.92 4.73
796 904 5.493133 AAGTTTCAACAAATGACTACGCA 57.507 34.783 0.00 0.00 37.92 5.24
797 905 9.769093 AATATAAGTTTCAACAAATGACTACGC 57.231 29.630 0.00 0.00 37.92 4.42
809 917 9.983804 CCTCCGTTCTTAAATATAAGTTTCAAC 57.016 33.333 0.00 0.00 39.65 3.18
810 918 9.169592 CCCTCCGTTCTTAAATATAAGTTTCAA 57.830 33.333 0.00 0.00 39.65 2.69
811 919 8.542080 TCCCTCCGTTCTTAAATATAAGTTTCA 58.458 33.333 0.00 0.00 39.65 2.69
812 920 8.953368 TCCCTCCGTTCTTAAATATAAGTTTC 57.047 34.615 0.00 0.00 39.65 2.78
813 921 8.546322 ACTCCCTCCGTTCTTAAATATAAGTTT 58.454 33.333 0.00 0.00 39.65 2.66
814 922 8.087303 ACTCCCTCCGTTCTTAAATATAAGTT 57.913 34.615 0.00 0.00 39.65 2.66
815 923 7.672122 ACTCCCTCCGTTCTTAAATATAAGT 57.328 36.000 0.00 0.00 39.65 2.24
816 924 7.813627 GCTACTCCCTCCGTTCTTAAATATAAG 59.186 40.741 0.00 0.00 39.97 1.73
817 925 7.288389 TGCTACTCCCTCCGTTCTTAAATATAA 59.712 37.037 0.00 0.00 0.00 0.98
818 926 6.779049 TGCTACTCCCTCCGTTCTTAAATATA 59.221 38.462 0.00 0.00 0.00 0.86
819 927 5.601313 TGCTACTCCCTCCGTTCTTAAATAT 59.399 40.000 0.00 0.00 0.00 1.28
820 928 4.957954 TGCTACTCCCTCCGTTCTTAAATA 59.042 41.667 0.00 0.00 0.00 1.40
821 929 3.773119 TGCTACTCCCTCCGTTCTTAAAT 59.227 43.478 0.00 0.00 0.00 1.40
822 930 3.167485 TGCTACTCCCTCCGTTCTTAAA 58.833 45.455 0.00 0.00 0.00 1.52
823 931 2.758979 CTGCTACTCCCTCCGTTCTTAA 59.241 50.000 0.00 0.00 0.00 1.85
824 932 2.291411 ACTGCTACTCCCTCCGTTCTTA 60.291 50.000 0.00 0.00 0.00 2.10
825 933 1.187087 CTGCTACTCCCTCCGTTCTT 58.813 55.000 0.00 0.00 0.00 2.52
826 934 0.039911 ACTGCTACTCCCTCCGTTCT 59.960 55.000 0.00 0.00 0.00 3.01
827 935 1.760192 TACTGCTACTCCCTCCGTTC 58.240 55.000 0.00 0.00 0.00 3.95
828 936 2.226962 TTACTGCTACTCCCTCCGTT 57.773 50.000 0.00 0.00 0.00 4.44
829 937 2.226962 TTTACTGCTACTCCCTCCGT 57.773 50.000 0.00 0.00 0.00 4.69
830 938 3.056035 ACTTTTTACTGCTACTCCCTCCG 60.056 47.826 0.00 0.00 0.00 4.63
831 939 4.505808 GACTTTTTACTGCTACTCCCTCC 58.494 47.826 0.00 0.00 0.00 4.30
832 940 4.223255 AGGACTTTTTACTGCTACTCCCTC 59.777 45.833 0.00 0.00 0.00 4.30
833 941 4.168883 AGGACTTTTTACTGCTACTCCCT 58.831 43.478 0.00 0.00 0.00 4.20
834 942 4.505808 GAGGACTTTTTACTGCTACTCCC 58.494 47.826 0.00 0.00 0.00 4.30
835 943 4.223255 AGGAGGACTTTTTACTGCTACTCC 59.777 45.833 0.00 0.00 41.66 3.85
836 944 5.408880 AGGAGGACTTTTTACTGCTACTC 57.591 43.478 0.00 0.00 30.81 2.59
837 945 5.544562 AGAAGGAGGACTTTTTACTGCTACT 59.455 40.000 0.00 0.00 40.21 2.57
838 946 5.639931 CAGAAGGAGGACTTTTTACTGCTAC 59.360 44.000 0.00 0.00 40.21 3.58
839 947 5.280011 CCAGAAGGAGGACTTTTTACTGCTA 60.280 44.000 0.00 0.00 40.21 3.49
840 948 4.505742 CCAGAAGGAGGACTTTTTACTGCT 60.506 45.833 0.00 0.00 40.21 4.24
923 1034 1.202114 CTGTCTCTGTCTCTGGAGTGC 59.798 57.143 0.00 0.00 0.00 4.40
983 1094 3.902218 CTCATGTCTCTCCTCTCCTCTT 58.098 50.000 0.00 0.00 0.00 2.85
1245 1368 1.209128 CGCTGAAGTTGTCGAACACT 58.791 50.000 0.00 0.00 34.17 3.55
1325 1463 2.541466 GGGAGTGGAGGAAGAAGAGAA 58.459 52.381 0.00 0.00 0.00 2.87
1397 1545 1.203441 AATCCTCCTGACCTGCAGCA 61.203 55.000 8.66 0.31 43.50 4.41
1398 1546 0.833287 TAATCCTCCTGACCTGCAGC 59.167 55.000 8.66 0.00 43.50 5.25
1399 1547 1.833630 TGTAATCCTCCTGACCTGCAG 59.166 52.381 6.78 6.78 44.49 4.41
1676 1825 7.415653 GGCATCCAACTAAAAATCTGTAGAAGG 60.416 40.741 0.00 0.00 0.00 3.46
1738 1887 0.670162 AGCCAAAGACACACATGCAC 59.330 50.000 0.00 0.00 0.00 4.57
2041 2192 1.713078 ACTCTTTGAAATCCCAGGGCT 59.287 47.619 0.00 0.00 0.00 5.19
2102 2253 7.665561 TGTTCTGTCGACAATTATCAATCAA 57.334 32.000 20.49 0.00 0.00 2.57
2103 2254 7.848223 ATGTTCTGTCGACAATTATCAATCA 57.152 32.000 20.49 8.78 0.00 2.57
2117 2268 4.749245 AAACAGCCTTAATGTTCTGTCG 57.251 40.909 0.00 0.00 39.91 4.35
2278 2429 5.915857 TCAAGATGTCGAGAATTTTGTTCG 58.084 37.500 9.71 0.00 35.76 3.95
2336 2487 2.069273 CAAACACTCCCGCAGAAGTAG 58.931 52.381 0.00 0.00 0.00 2.57
2385 2536 0.902531 TCCCATGTCGAGGAAAGACC 59.097 55.000 0.00 0.00 37.80 3.85
2453 2637 2.030717 CACAGTGCACGAGAGAACTAGT 60.031 50.000 12.01 0.00 32.50 2.57
2483 2667 1.450312 GGATTCAGGGTGCTCCACG 60.450 63.158 7.20 0.00 38.24 4.94
2752 2943 3.508744 AGTTGTGCTGGACTTGTTTTG 57.491 42.857 0.00 0.00 0.00 2.44
2924 3117 3.359033 AGCATGCATACCACTGATTTGT 58.641 40.909 21.98 0.00 0.00 2.83
3113 3306 0.733566 TGCCGCCGTAGTTTTACTCG 60.734 55.000 0.00 0.00 0.00 4.18
3281 3474 1.408702 ACAATTGTTGTGACTGGTGCC 59.591 47.619 4.92 0.00 43.48 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.