Multiple sequence alignment - TraesCS3D01G159900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G159900 chr3D 100.000 3879 0 0 1 3879 130503945 130507823 0.000000e+00 7164.0
1 TraesCS3D01G159900 chr3A 94.226 2390 101 21 908 3269 142579091 142581471 0.000000e+00 3615.0
2 TraesCS3D01G159900 chr3A 88.636 616 29 21 3258 3860 142581605 142582192 0.000000e+00 712.0
3 TraesCS3D01G159900 chr3A 88.502 287 11 11 3551 3836 142882947 142883212 1.040000e-85 327.0
4 TraesCS3D01G159900 chr3A 82.847 274 36 9 1514 1779 156241001 156240731 6.480000e-58 235.0
5 TraesCS3D01G159900 chr3A 89.362 188 9 3 596 772 142578747 142578934 3.900000e-55 226.0
6 TraesCS3D01G159900 chr3A 88.485 165 19 0 212 376 356085367 356085203 2.360000e-47 200.0
7 TraesCS3D01G159900 chr3A 92.308 91 6 1 396 485 142578534 142578624 1.130000e-25 128.0
8 TraesCS3D01G159900 chr3A 96.552 58 2 0 157 214 142578471 142578528 3.190000e-16 97.1
9 TraesCS3D01G159900 chr3B 93.750 1264 64 8 2128 3379 187330508 187331768 0.000000e+00 1882.0
10 TraesCS3D01G159900 chr3B 90.637 534 33 10 1050 1566 187329961 187330494 0.000000e+00 693.0
11 TraesCS3D01G159900 chr3B 86.102 295 21 8 369 643 187153219 187153513 2.270000e-77 300.0
12 TraesCS3D01G159900 chr3B 89.952 209 15 3 1 207 187153016 187153220 8.260000e-67 265.0
13 TraesCS3D01G159900 chr3B 98.276 116 2 0 3745 3860 187331921 187332036 1.830000e-48 204.0
14 TraesCS3D01G159900 chr3B 91.045 134 8 3 924 1055 187329871 187330002 1.110000e-40 178.0
15 TraesCS3D01G159900 chr4B 95.215 418 9 3 2075 2491 117059581 117059988 0.000000e+00 651.0
16 TraesCS3D01G159900 chr4D 90.184 163 14 2 212 373 497028275 497028436 1.090000e-50 211.0
17 TraesCS3D01G159900 chr2A 89.157 166 18 0 208 373 161773055 161772890 1.410000e-49 207.0
18 TraesCS3D01G159900 chr6B 88.690 168 19 0 206 373 128931718 128931885 5.080000e-49 206.0
19 TraesCS3D01G159900 chr6A 88.757 169 18 1 209 376 153367039 153366871 5.080000e-49 206.0
20 TraesCS3D01G159900 chr1B 89.506 162 16 1 212 373 610318352 610318512 1.830000e-48 204.0
21 TraesCS3D01G159900 chr7D 88.690 168 16 3 209 375 500966133 500966298 6.570000e-48 202.0
22 TraesCS3D01G159900 chr2D 88.957 163 17 1 212 374 78567559 78567720 2.360000e-47 200.0
23 TraesCS3D01G159900 chr5B 88.095 168 18 2 208 373 13084108 13084275 8.500000e-47 198.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G159900 chr3D 130503945 130507823 3878 False 7164.00 7164 100.0000 1 3879 1 chr3D.!!$F1 3878
1 TraesCS3D01G159900 chr3A 142578471 142582192 3721 False 955.62 3615 92.2168 157 3860 5 chr3A.!!$F2 3703
2 TraesCS3D01G159900 chr3B 187329871 187332036 2165 False 739.25 1882 93.4270 924 3860 4 chr3B.!!$F2 2936

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
40 41 0.037447 GGGCTTTGCTCCTCTCTTGT 59.963 55.0 0.0 0.0 0.00 3.16 F
583 585 0.104409 GGTGGATCATAGGACCCCCT 60.104 60.0 0.0 0.0 46.62 4.79 F
1974 2147 0.178981 ATTGCCACCAACTGAGCACT 60.179 50.0 0.0 0.0 34.37 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1592 1762 0.742505 AAGGAACATGGCATGCATCG 59.257 50.0 26.7 8.99 0.00 3.84 R
2328 2505 0.662619 CAAGACGAAGCAAGGCAACA 59.337 50.0 0.0 0.00 41.41 3.33 R
3461 3802 0.179045 GCTTCCCATGTCCGCTGTAT 60.179 55.0 0.0 0.00 0.00 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.730626 CAGAGCACGGAAAGAGTCG 58.269 57.895 0.00 0.00 0.00 4.18
19 20 0.241213 CAGAGCACGGAAAGAGTCGA 59.759 55.000 0.00 0.00 0.00 4.20
20 21 0.241481 AGAGCACGGAAAGAGTCGAC 59.759 55.000 7.70 7.70 0.00 4.20
21 22 1.066114 GAGCACGGAAAGAGTCGACG 61.066 60.000 10.46 0.00 0.00 5.12
22 23 2.087009 GCACGGAAAGAGTCGACGG 61.087 63.158 10.46 0.00 0.00 4.79
23 24 1.443872 CACGGAAAGAGTCGACGGG 60.444 63.158 10.46 0.00 0.00 5.28
24 25 2.506438 CGGAAAGAGTCGACGGGC 60.506 66.667 10.46 3.92 0.00 6.13
25 26 2.971452 GGAAAGAGTCGACGGGCT 59.029 61.111 10.46 6.36 0.00 5.19
26 27 1.292541 GGAAAGAGTCGACGGGCTT 59.707 57.895 10.46 12.16 0.00 4.35
27 28 0.320508 GGAAAGAGTCGACGGGCTTT 60.321 55.000 24.09 24.09 33.62 3.51
28 29 0.790814 GAAAGAGTCGACGGGCTTTG 59.209 55.000 26.92 0.00 31.30 2.77
29 30 1.228657 AAAGAGTCGACGGGCTTTGC 61.229 55.000 23.58 5.42 0.00 3.68
30 31 2.048127 GAGTCGACGGGCTTTGCT 60.048 61.111 10.46 0.00 0.00 3.91
31 32 2.048127 AGTCGACGGGCTTTGCTC 60.048 61.111 10.46 0.00 0.00 4.26
32 33 3.119096 GTCGACGGGCTTTGCTCC 61.119 66.667 0.00 0.00 0.00 4.70
33 34 3.311110 TCGACGGGCTTTGCTCCT 61.311 61.111 0.00 0.00 0.00 3.69
34 35 2.815647 CGACGGGCTTTGCTCCTC 60.816 66.667 0.00 0.00 0.00 3.71
35 36 2.665603 GACGGGCTTTGCTCCTCT 59.334 61.111 0.00 0.00 0.00 3.69
36 37 1.448717 GACGGGCTTTGCTCCTCTC 60.449 63.158 0.00 0.00 0.00 3.20
37 38 1.893919 GACGGGCTTTGCTCCTCTCT 61.894 60.000 0.00 0.00 0.00 3.10
38 39 1.298014 CGGGCTTTGCTCCTCTCTT 59.702 57.895 0.00 0.00 0.00 2.85
39 40 1.023513 CGGGCTTTGCTCCTCTCTTG 61.024 60.000 0.00 0.00 0.00 3.02
40 41 0.037447 GGGCTTTGCTCCTCTCTTGT 59.963 55.000 0.00 0.00 0.00 3.16
41 42 1.279271 GGGCTTTGCTCCTCTCTTGTA 59.721 52.381 0.00 0.00 0.00 2.41
42 43 2.351455 GGCTTTGCTCCTCTCTTGTAC 58.649 52.381 0.00 0.00 0.00 2.90
43 44 2.289694 GGCTTTGCTCCTCTCTTGTACA 60.290 50.000 0.00 0.00 0.00 2.90
44 45 3.604582 GCTTTGCTCCTCTCTTGTACAT 58.395 45.455 0.00 0.00 0.00 2.29
45 46 3.373439 GCTTTGCTCCTCTCTTGTACATG 59.627 47.826 0.00 0.00 0.00 3.21
46 47 3.616956 TTGCTCCTCTCTTGTACATGG 57.383 47.619 8.74 0.00 0.00 3.66
47 48 2.820178 TGCTCCTCTCTTGTACATGGA 58.180 47.619 8.74 4.26 0.00 3.41
48 49 3.378512 TGCTCCTCTCTTGTACATGGAT 58.621 45.455 8.74 0.00 0.00 3.41
49 50 3.133542 TGCTCCTCTCTTGTACATGGATG 59.866 47.826 8.74 3.53 0.00 3.51
50 51 3.133721 GCTCCTCTCTTGTACATGGATGT 59.866 47.826 8.74 0.00 44.48 3.06
51 52 4.342378 GCTCCTCTCTTGTACATGGATGTA 59.658 45.833 8.74 0.00 41.97 2.29
67 68 9.815306 ACATGGATGTACTCTAGTAGTTATGAT 57.185 33.333 0.00 0.00 39.68 2.45
69 70 8.865420 TGGATGTACTCTAGTAGTTATGATCC 57.135 38.462 0.00 5.46 39.80 3.36
70 71 8.670490 TGGATGTACTCTAGTAGTTATGATCCT 58.330 37.037 15.25 0.00 39.80 3.24
71 72 9.523168 GGATGTACTCTAGTAGTTATGATCCTT 57.477 37.037 0.00 0.00 39.80 3.36
81 82 8.196378 AGTAGTTATGATCCTTATGAACTCCC 57.804 38.462 0.00 0.00 0.00 4.30
82 83 6.102897 AGTTATGATCCTTATGAACTCCCG 57.897 41.667 0.00 0.00 0.00 5.14
83 84 5.012148 AGTTATGATCCTTATGAACTCCCGG 59.988 44.000 0.00 0.00 0.00 5.73
84 85 2.047061 TGATCCTTATGAACTCCCGGG 58.953 52.381 16.85 16.85 0.00 5.73
85 86 2.047830 GATCCTTATGAACTCCCGGGT 58.952 52.381 22.86 0.00 0.00 5.28
86 87 1.200519 TCCTTATGAACTCCCGGGTG 58.799 55.000 22.86 21.86 0.00 4.61
87 88 0.909623 CCTTATGAACTCCCGGGTGT 59.090 55.000 22.51 22.51 0.00 4.16
88 89 1.134491 CCTTATGAACTCCCGGGTGTC 60.134 57.143 27.59 19.95 0.00 3.67
89 90 0.533491 TTATGAACTCCCGGGTGTCG 59.467 55.000 27.59 13.61 38.88 4.35
90 91 1.952102 TATGAACTCCCGGGTGTCGC 61.952 60.000 27.59 21.58 37.59 5.19
91 92 3.692406 GAACTCCCGGGTGTCGCT 61.692 66.667 27.59 13.27 37.59 4.93
92 93 3.236003 GAACTCCCGGGTGTCGCTT 62.236 63.158 27.59 12.89 37.59 4.68
93 94 2.726822 GAACTCCCGGGTGTCGCTTT 62.727 60.000 27.59 12.49 37.59 3.51
94 95 2.742372 CTCCCGGGTGTCGCTTTG 60.742 66.667 22.86 0.00 37.59 2.77
95 96 3.530910 CTCCCGGGTGTCGCTTTGT 62.531 63.158 22.86 0.00 37.59 2.83
96 97 2.162338 CTCCCGGGTGTCGCTTTGTA 62.162 60.000 22.86 0.00 37.59 2.41
97 98 2.030958 CCCGGGTGTCGCTTTGTAC 61.031 63.158 14.18 0.00 37.59 2.90
98 99 2.030958 CCGGGTGTCGCTTTGTACC 61.031 63.158 0.00 0.00 37.59 3.34
99 100 3.976758 GGGTGTCGCTTTGTACCC 58.023 61.111 0.00 0.00 45.32 3.69
101 102 3.317449 GGTGTCGCTTTGTACCCTT 57.683 52.632 0.00 0.00 0.00 3.95
102 103 1.154197 GGTGTCGCTTTGTACCCTTC 58.846 55.000 0.00 0.00 0.00 3.46
103 104 1.541670 GGTGTCGCTTTGTACCCTTCA 60.542 52.381 0.00 0.00 0.00 3.02
104 105 2.215196 GTGTCGCTTTGTACCCTTCAA 58.785 47.619 0.00 0.00 0.00 2.69
105 106 2.614983 GTGTCGCTTTGTACCCTTCAAA 59.385 45.455 0.00 0.00 34.34 2.69
106 107 3.065648 GTGTCGCTTTGTACCCTTCAAAA 59.934 43.478 0.00 0.00 34.96 2.44
107 108 3.695060 TGTCGCTTTGTACCCTTCAAAAA 59.305 39.130 0.00 0.00 34.96 1.94
108 109 4.339814 TGTCGCTTTGTACCCTTCAAAAAT 59.660 37.500 0.00 0.00 34.96 1.82
109 110 4.679654 GTCGCTTTGTACCCTTCAAAAATG 59.320 41.667 0.00 0.00 34.96 2.32
110 111 4.339814 TCGCTTTGTACCCTTCAAAAATGT 59.660 37.500 0.00 0.00 34.96 2.71
111 112 5.531659 TCGCTTTGTACCCTTCAAAAATGTA 59.468 36.000 0.00 0.00 34.96 2.29
112 113 6.207810 TCGCTTTGTACCCTTCAAAAATGTAT 59.792 34.615 0.00 0.00 34.96 2.29
113 114 7.390996 TCGCTTTGTACCCTTCAAAAATGTATA 59.609 33.333 0.00 0.00 34.96 1.47
114 115 7.696453 CGCTTTGTACCCTTCAAAAATGTATAG 59.304 37.037 0.00 0.00 34.96 1.31
115 116 7.488150 GCTTTGTACCCTTCAAAAATGTATAGC 59.512 37.037 0.00 0.00 34.96 2.97
116 117 8.410673 TTTGTACCCTTCAAAAATGTATAGCA 57.589 30.769 0.00 0.00 32.86 3.49
117 118 8.410673 TTGTACCCTTCAAAAATGTATAGCAA 57.589 30.769 0.00 0.00 0.00 3.91
118 119 7.822658 TGTACCCTTCAAAAATGTATAGCAAC 58.177 34.615 0.00 0.00 0.00 4.17
119 120 7.668052 TGTACCCTTCAAAAATGTATAGCAACT 59.332 33.333 0.00 0.00 0.00 3.16
120 121 7.539034 ACCCTTCAAAAATGTATAGCAACTT 57.461 32.000 0.00 0.00 0.00 2.66
121 122 8.644374 ACCCTTCAAAAATGTATAGCAACTTA 57.356 30.769 0.00 0.00 0.00 2.24
122 123 8.739972 ACCCTTCAAAAATGTATAGCAACTTAG 58.260 33.333 0.00 0.00 0.00 2.18
123 124 7.702348 CCCTTCAAAAATGTATAGCAACTTAGC 59.298 37.037 0.00 0.00 0.00 3.09
124 125 8.243426 CCTTCAAAAATGTATAGCAACTTAGCA 58.757 33.333 0.00 0.00 36.85 3.49
125 126 9.624697 CTTCAAAAATGTATAGCAACTTAGCAA 57.375 29.630 0.00 0.00 36.85 3.91
126 127 8.964420 TCAAAAATGTATAGCAACTTAGCAAC 57.036 30.769 0.00 0.00 36.85 4.17
127 128 8.572185 TCAAAAATGTATAGCAACTTAGCAACA 58.428 29.630 0.00 0.00 36.85 3.33
128 129 8.638565 CAAAAATGTATAGCAACTTAGCAACAC 58.361 33.333 0.00 0.00 36.85 3.32
129 130 5.718649 ATGTATAGCAACTTAGCAACACG 57.281 39.130 0.00 0.00 36.85 4.49
130 131 3.930229 TGTATAGCAACTTAGCAACACGG 59.070 43.478 0.00 0.00 36.85 4.94
131 132 2.536761 TAGCAACTTAGCAACACGGT 57.463 45.000 0.00 0.00 36.85 4.83
132 133 1.675552 AGCAACTTAGCAACACGGTT 58.324 45.000 0.00 0.00 36.85 4.44
133 134 2.021457 AGCAACTTAGCAACACGGTTT 58.979 42.857 0.00 0.00 36.85 3.27
134 135 3.207778 AGCAACTTAGCAACACGGTTTA 58.792 40.909 0.00 0.00 36.85 2.01
135 136 3.250040 AGCAACTTAGCAACACGGTTTAG 59.750 43.478 0.00 0.00 36.85 1.85
136 137 3.249080 GCAACTTAGCAACACGGTTTAGA 59.751 43.478 0.00 0.00 0.00 2.10
137 138 4.260866 GCAACTTAGCAACACGGTTTAGAA 60.261 41.667 0.00 0.00 0.00 2.10
138 139 5.202640 CAACTTAGCAACACGGTTTAGAAC 58.797 41.667 0.00 0.00 0.00 3.01
139 140 4.700700 ACTTAGCAACACGGTTTAGAACT 58.299 39.130 0.00 0.00 0.00 3.01
140 141 4.510340 ACTTAGCAACACGGTTTAGAACTG 59.490 41.667 0.00 0.00 43.50 3.16
141 142 2.218603 AGCAACACGGTTTAGAACTGG 58.781 47.619 4.81 0.00 42.15 4.00
142 143 2.158871 AGCAACACGGTTTAGAACTGGA 60.159 45.455 4.81 0.00 42.15 3.86
143 144 2.614983 GCAACACGGTTTAGAACTGGAA 59.385 45.455 4.81 0.00 42.15 3.53
144 145 3.303791 GCAACACGGTTTAGAACTGGAAG 60.304 47.826 4.81 0.00 42.15 3.46
145 146 3.121738 ACACGGTTTAGAACTGGAAGG 57.878 47.619 4.81 0.00 42.15 3.46
146 147 2.701951 ACACGGTTTAGAACTGGAAGGA 59.298 45.455 4.81 0.00 42.15 3.36
147 148 3.244112 ACACGGTTTAGAACTGGAAGGAG 60.244 47.826 4.81 0.00 42.15 3.69
148 149 2.970640 ACGGTTTAGAACTGGAAGGAGT 59.029 45.455 4.81 0.00 42.15 3.85
149 150 3.006644 ACGGTTTAGAACTGGAAGGAGTC 59.993 47.826 4.81 0.00 42.15 3.36
150 151 3.586892 GGTTTAGAACTGGAAGGAGTCG 58.413 50.000 0.00 0.00 39.30 4.18
151 152 2.994578 GTTTAGAACTGGAAGGAGTCGC 59.005 50.000 0.00 0.00 39.30 5.19
152 153 1.183549 TAGAACTGGAAGGAGTCGCC 58.816 55.000 0.00 0.00 39.30 5.54
153 154 0.832135 AGAACTGGAAGGAGTCGCCA 60.832 55.000 0.00 0.00 39.30 5.69
154 155 0.250513 GAACTGGAAGGAGTCGCCAT 59.749 55.000 0.00 0.00 39.30 4.40
155 156 1.480954 GAACTGGAAGGAGTCGCCATA 59.519 52.381 0.00 0.00 39.30 2.74
192 193 9.383519 CAGTGTAAAGTTCAGGATATGTATGTT 57.616 33.333 0.00 0.00 0.00 2.71
196 197 9.614792 GTAAAGTTCAGGATATGTATGTTCCTT 57.385 33.333 0.00 0.00 37.80 3.36
217 218 9.901172 TTCCTTTTCTTGTAGATTTATACTCCC 57.099 33.333 0.00 0.00 0.00 4.30
219 220 9.549078 CCTTTTCTTGTAGATTTATACTCCCTC 57.451 37.037 0.00 0.00 0.00 4.30
222 223 8.840200 TTCTTGTAGATTTATACTCCCTCTGT 57.160 34.615 0.00 0.00 0.00 3.41
223 224 8.840200 TCTTGTAGATTTATACTCCCTCTGTT 57.160 34.615 0.00 0.00 0.00 3.16
224 225 9.268282 TCTTGTAGATTTATACTCCCTCTGTTT 57.732 33.333 0.00 0.00 0.00 2.83
225 226 9.535878 CTTGTAGATTTATACTCCCTCTGTTTC 57.464 37.037 0.00 0.00 0.00 2.78
226 227 8.840200 TGTAGATTTATACTCCCTCTGTTTCT 57.160 34.615 0.00 0.00 0.00 2.52
227 228 9.931698 TGTAGATTTATACTCCCTCTGTTTCTA 57.068 33.333 0.00 0.00 0.00 2.10
238 239 9.495382 ACTCCCTCTGTTTCTAAATATAAGTCT 57.505 33.333 0.00 0.00 0.00 3.24
239 240 9.974980 CTCCCTCTGTTTCTAAATATAAGTCTC 57.025 37.037 0.00 0.00 0.00 3.36
240 241 9.716556 TCCCTCTGTTTCTAAATATAAGTCTCT 57.283 33.333 0.00 0.00 0.00 3.10
274 275 9.489084 TTTCAATATGGACTACATACATAGCAC 57.511 33.333 0.00 0.00 44.41 4.40
275 276 8.189119 TCAATATGGACTACATACATAGCACA 57.811 34.615 0.00 0.00 44.41 4.57
276 277 8.646900 TCAATATGGACTACATACATAGCACAA 58.353 33.333 0.00 0.00 44.41 3.33
277 278 9.440773 CAATATGGACTACATACATAGCACAAT 57.559 33.333 0.00 0.00 44.41 2.71
278 279 9.440773 AATATGGACTACATACATAGCACAATG 57.559 33.333 0.00 0.00 44.41 2.82
279 280 6.478512 TGGACTACATACATAGCACAATGA 57.521 37.500 0.00 0.00 0.00 2.57
280 281 6.515832 TGGACTACATACATAGCACAATGAG 58.484 40.000 0.00 0.00 0.00 2.90
281 282 6.098266 TGGACTACATACATAGCACAATGAGT 59.902 38.462 0.00 0.00 0.00 3.41
320 321 8.738199 AAAATACGTCTATATACATCCGTGTG 57.262 34.615 0.00 0.00 39.39 3.82
321 322 7.444629 AATACGTCTATATACATCCGTGTGT 57.555 36.000 0.00 0.00 39.39 3.72
322 323 8.552083 AATACGTCTATATACATCCGTGTGTA 57.448 34.615 0.00 0.41 39.39 2.90
323 324 6.477669 ACGTCTATATACATCCGTGTGTAG 57.522 41.667 3.93 0.00 39.39 2.74
324 325 5.994054 ACGTCTATATACATCCGTGTGTAGT 59.006 40.000 3.93 0.00 39.39 2.73
325 326 6.484643 ACGTCTATATACATCCGTGTGTAGTT 59.515 38.462 3.93 0.00 39.39 2.24
326 327 7.014115 CGTCTATATACATCCGTGTGTAGTTC 58.986 42.308 3.93 0.00 39.39 3.01
327 328 7.307573 CGTCTATATACATCCGTGTGTAGTTCA 60.308 40.741 3.93 0.00 39.39 3.18
328 329 8.512956 GTCTATATACATCCGTGTGTAGTTCAT 58.487 37.037 3.93 0.00 39.39 2.57
329 330 9.729281 TCTATATACATCCGTGTGTAGTTCATA 57.271 33.333 3.93 0.00 39.39 2.15
332 333 7.946655 ATACATCCGTGTGTAGTTCATATTG 57.053 36.000 3.93 0.00 39.39 1.90
333 334 5.972935 ACATCCGTGTGTAGTTCATATTGA 58.027 37.500 0.00 0.00 37.14 2.57
334 335 6.403049 ACATCCGTGTGTAGTTCATATTGAA 58.597 36.000 0.00 0.00 37.14 2.69
335 336 6.876789 ACATCCGTGTGTAGTTCATATTGAAA 59.123 34.615 0.00 0.00 36.18 2.69
336 337 7.552687 ACATCCGTGTGTAGTTCATATTGAAAT 59.447 33.333 0.00 0.00 36.18 2.17
337 338 9.040939 CATCCGTGTGTAGTTCATATTGAAATA 57.959 33.333 0.00 0.00 38.22 1.40
338 339 9.778741 ATCCGTGTGTAGTTCATATTGAAATAT 57.221 29.630 1.38 0.00 38.84 1.28
339 340 9.256477 TCCGTGTGTAGTTCATATTGAAATATC 57.744 33.333 1.38 0.51 38.84 1.63
340 341 9.261180 CCGTGTGTAGTTCATATTGAAATATCT 57.739 33.333 1.38 0.00 38.84 1.98
367 368 8.904099 AAAAGACATATATTTAGGAACGGAGG 57.096 34.615 0.00 0.00 0.00 4.30
368 369 6.607004 AGACATATATTTAGGAACGGAGGG 57.393 41.667 0.00 0.00 0.00 4.30
369 370 6.320518 AGACATATATTTAGGAACGGAGGGA 58.679 40.000 0.00 0.00 0.00 4.20
370 371 6.437793 AGACATATATTTAGGAACGGAGGGAG 59.562 42.308 0.00 0.00 0.00 4.30
371 372 6.082707 ACATATATTTAGGAACGGAGGGAGT 58.917 40.000 0.00 0.00 0.00 3.85
372 373 7.243824 ACATATATTTAGGAACGGAGGGAGTA 58.756 38.462 0.00 0.00 0.00 2.59
373 374 7.178097 ACATATATTTAGGAACGGAGGGAGTAC 59.822 40.741 0.00 0.00 0.00 2.73
374 375 2.905415 TTAGGAACGGAGGGAGTACA 57.095 50.000 0.00 0.00 0.00 2.90
375 376 3.393426 TTAGGAACGGAGGGAGTACAT 57.607 47.619 0.00 0.00 0.00 2.29
376 377 4.524802 TTAGGAACGGAGGGAGTACATA 57.475 45.455 0.00 0.00 0.00 2.29
377 378 2.664015 AGGAACGGAGGGAGTACATAC 58.336 52.381 0.00 0.00 0.00 2.39
378 379 1.685517 GGAACGGAGGGAGTACATACC 59.314 57.143 0.00 0.00 0.00 2.73
379 380 2.381911 GAACGGAGGGAGTACATACCA 58.618 52.381 0.00 0.00 0.00 3.25
380 381 2.769602 ACGGAGGGAGTACATACCAT 57.230 50.000 0.00 0.00 0.00 3.55
381 382 2.317040 ACGGAGGGAGTACATACCATG 58.683 52.381 0.00 0.00 0.00 3.66
382 383 2.091499 ACGGAGGGAGTACATACCATGA 60.091 50.000 0.00 0.00 0.00 3.07
383 384 2.558795 CGGAGGGAGTACATACCATGAG 59.441 54.545 0.00 0.00 0.00 2.90
384 385 3.750922 CGGAGGGAGTACATACCATGAGA 60.751 52.174 0.00 0.00 0.00 3.27
385 386 3.829601 GGAGGGAGTACATACCATGAGAG 59.170 52.174 0.00 0.00 0.00 3.20
386 387 3.829601 GAGGGAGTACATACCATGAGAGG 59.170 52.174 0.00 0.00 0.00 3.69
387 388 3.467483 AGGGAGTACATACCATGAGAGGA 59.533 47.826 0.00 0.00 0.00 3.71
388 389 3.574826 GGGAGTACATACCATGAGAGGAC 59.425 52.174 0.00 0.00 0.00 3.85
389 390 4.215908 GGAGTACATACCATGAGAGGACA 58.784 47.826 0.00 0.00 0.00 4.02
390 391 4.649674 GGAGTACATACCATGAGAGGACAA 59.350 45.833 0.00 0.00 0.00 3.18
391 392 5.128827 GGAGTACATACCATGAGAGGACAAA 59.871 44.000 0.00 0.00 0.00 2.83
392 393 6.351881 GGAGTACATACCATGAGAGGACAAAA 60.352 42.308 0.00 0.00 0.00 2.44
393 394 7.016153 AGTACATACCATGAGAGGACAAAAA 57.984 36.000 0.00 0.00 0.00 1.94
394 395 7.106239 AGTACATACCATGAGAGGACAAAAAG 58.894 38.462 0.00 0.00 0.00 2.27
399 400 3.305608 CCATGAGAGGACAAAAAGGTTGC 60.306 47.826 0.00 0.00 0.00 4.17
418 420 5.388944 GTTGCATAGAAAGAAGCAAGACTG 58.611 41.667 0.00 0.00 46.32 3.51
419 421 6.123081 GTTGCATAGAAAGAAGCAAGACTGC 61.123 44.000 0.00 0.00 46.32 4.40
437 439 5.934625 AGACTGCGAAATGTGAACTAAAGAT 59.065 36.000 0.00 0.00 0.00 2.40
444 446 7.530010 CGAAATGTGAACTAAAGATGTGGATT 58.470 34.615 0.00 0.00 0.00 3.01
485 487 2.189594 TCCACTGTGGCTTCTTGATG 57.810 50.000 22.02 0.00 37.47 3.07
486 488 1.171308 CCACTGTGGCTTCTTGATGG 58.829 55.000 14.87 0.00 0.00 3.51
487 489 1.171308 CACTGTGGCTTCTTGATGGG 58.829 55.000 0.00 0.00 0.00 4.00
488 490 1.067295 ACTGTGGCTTCTTGATGGGA 58.933 50.000 0.00 0.00 0.00 4.37
489 491 1.425066 ACTGTGGCTTCTTGATGGGAA 59.575 47.619 0.00 0.00 0.00 3.97
490 492 2.158475 ACTGTGGCTTCTTGATGGGAAA 60.158 45.455 0.00 0.00 0.00 3.13
491 493 2.892852 CTGTGGCTTCTTGATGGGAAAA 59.107 45.455 0.00 0.00 0.00 2.29
492 494 2.627699 TGTGGCTTCTTGATGGGAAAAC 59.372 45.455 0.00 0.00 0.00 2.43
493 495 2.627699 GTGGCTTCTTGATGGGAAAACA 59.372 45.455 0.00 0.00 0.00 2.83
494 496 3.069443 GTGGCTTCTTGATGGGAAAACAA 59.931 43.478 0.00 0.00 0.00 2.83
495 497 3.069443 TGGCTTCTTGATGGGAAAACAAC 59.931 43.478 0.00 0.00 0.00 3.32
496 498 3.069443 GGCTTCTTGATGGGAAAACAACA 59.931 43.478 0.00 0.00 0.00 3.33
497 499 4.051237 GCTTCTTGATGGGAAAACAACAC 58.949 43.478 0.00 0.00 0.00 3.32
498 500 4.202151 GCTTCTTGATGGGAAAACAACACT 60.202 41.667 0.00 0.00 0.00 3.55
499 501 5.682212 GCTTCTTGATGGGAAAACAACACTT 60.682 40.000 0.00 0.00 0.00 3.16
500 502 5.261209 TCTTGATGGGAAAACAACACTTG 57.739 39.130 0.00 0.00 0.00 3.16
501 503 4.952957 TCTTGATGGGAAAACAACACTTGA 59.047 37.500 0.00 0.00 0.00 3.02
502 504 4.647424 TGATGGGAAAACAACACTTGAC 57.353 40.909 0.00 0.00 0.00 3.18
503 505 4.019858 TGATGGGAAAACAACACTTGACA 58.980 39.130 0.00 0.00 0.00 3.58
504 506 4.648762 TGATGGGAAAACAACACTTGACAT 59.351 37.500 0.00 0.00 0.00 3.06
505 507 4.647424 TGGGAAAACAACACTTGACATC 57.353 40.909 0.00 0.00 0.00 3.06
506 508 3.066064 TGGGAAAACAACACTTGACATCG 59.934 43.478 0.00 0.00 0.00 3.84
507 509 3.042887 GGAAAACAACACTTGACATCGC 58.957 45.455 0.00 0.00 0.00 4.58
508 510 3.488384 GGAAAACAACACTTGACATCGCA 60.488 43.478 0.00 0.00 0.00 5.10
509 511 3.988379 AAACAACACTTGACATCGCAT 57.012 38.095 0.00 0.00 0.00 4.73
510 512 2.975410 ACAACACTTGACATCGCATG 57.025 45.000 0.00 0.00 0.00 4.06
511 513 2.493035 ACAACACTTGACATCGCATGA 58.507 42.857 0.00 0.00 0.00 3.07
512 514 3.076621 ACAACACTTGACATCGCATGAT 58.923 40.909 0.00 0.00 34.28 2.45
513 515 3.125829 ACAACACTTGACATCGCATGATC 59.874 43.478 0.00 0.00 30.49 2.92
514 516 1.929169 ACACTTGACATCGCATGATCG 59.071 47.619 0.00 0.00 30.49 3.69
515 517 2.195922 CACTTGACATCGCATGATCGA 58.804 47.619 0.00 0.00 43.09 3.59
516 518 2.604462 CACTTGACATCGCATGATCGAA 59.396 45.455 0.00 0.00 42.15 3.71
517 519 3.062504 CACTTGACATCGCATGATCGAAA 59.937 43.478 0.00 0.00 42.15 3.46
518 520 3.062639 ACTTGACATCGCATGATCGAAAC 59.937 43.478 0.00 0.00 42.15 2.78
519 521 2.615869 TGACATCGCATGATCGAAACA 58.384 42.857 0.00 0.00 42.15 2.83
520 522 3.197265 TGACATCGCATGATCGAAACAT 58.803 40.909 0.00 0.00 42.15 2.71
521 523 4.367450 TGACATCGCATGATCGAAACATA 58.633 39.130 0.00 0.00 42.15 2.29
522 524 4.808364 TGACATCGCATGATCGAAACATAA 59.192 37.500 0.00 0.00 42.15 1.90
523 525 5.466393 TGACATCGCATGATCGAAACATAAT 59.534 36.000 0.00 1.86 42.15 1.28
524 526 5.682869 ACATCGCATGATCGAAACATAATG 58.317 37.500 0.00 12.42 42.15 1.90
525 527 4.132529 TCGCATGATCGAAACATAATGC 57.867 40.909 0.00 8.39 37.30 3.56
526 528 3.809279 TCGCATGATCGAAACATAATGCT 59.191 39.130 0.00 0.00 38.20 3.79
527 529 4.987912 TCGCATGATCGAAACATAATGCTA 59.012 37.500 0.00 5.12 38.20 3.49
528 530 5.465056 TCGCATGATCGAAACATAATGCTAA 59.535 36.000 0.00 4.52 38.20 3.09
529 531 6.147656 TCGCATGATCGAAACATAATGCTAAT 59.852 34.615 0.00 0.00 38.20 1.73
530 532 6.247791 CGCATGATCGAAACATAATGCTAATG 59.752 38.462 0.00 0.00 38.20 1.90
561 563 7.390440 CAGGAGTAAATTTCCACAGTGACATTA 59.610 37.037 0.62 0.00 37.18 1.90
564 566 8.055279 AGTAAATTTCCACAGTGACATTATGG 57.945 34.615 0.62 0.00 0.00 2.74
573 575 4.166725 ACAGTGACATTATGGGTGGATCAT 59.833 41.667 0.00 0.00 0.00 2.45
574 576 5.369404 ACAGTGACATTATGGGTGGATCATA 59.631 40.000 0.00 0.00 0.00 2.15
582 584 1.134438 GGGTGGATCATAGGACCCCC 61.134 65.000 0.00 0.00 42.13 5.40
583 585 0.104409 GGTGGATCATAGGACCCCCT 60.104 60.000 0.00 0.00 46.62 4.79
584 586 1.059913 GTGGATCATAGGACCCCCTG 58.940 60.000 0.00 0.00 44.15 4.45
588 590 2.783510 GGATCATAGGACCCCCTGAAAA 59.216 50.000 0.00 0.00 44.15 2.29
589 591 3.399305 GGATCATAGGACCCCCTGAAAAT 59.601 47.826 0.00 0.00 44.15 1.82
590 592 4.601857 GGATCATAGGACCCCCTGAAAATA 59.398 45.833 0.00 0.00 44.15 1.40
592 594 5.582950 TCATAGGACCCCCTGAAAATATG 57.417 43.478 0.00 0.00 44.15 1.78
593 595 2.755952 AGGACCCCCTGAAAATATGC 57.244 50.000 0.00 0.00 42.42 3.14
594 596 1.133792 AGGACCCCCTGAAAATATGCG 60.134 52.381 0.00 0.00 42.42 4.73
596 598 0.755327 ACCCCCTGAAAATATGCGGC 60.755 55.000 0.00 0.00 0.00 6.53
597 599 0.754957 CCCCCTGAAAATATGCGGCA 60.755 55.000 4.58 4.58 0.00 5.69
598 600 1.110442 CCCCTGAAAATATGCGGCAA 58.890 50.000 6.82 0.00 0.00 4.52
640 699 2.392662 TCACCCAAAAAGTCCAATGCA 58.607 42.857 0.00 0.00 0.00 3.96
657 726 5.236282 CAATGCAAACACATCCCAATTACA 58.764 37.500 0.00 0.00 0.00 2.41
687 756 3.710326 AATGTGCACATCATCAGCATC 57.290 42.857 31.45 0.00 40.78 3.91
698 767 7.148474 GCACATCATCAGCATCTTTTTGAATTT 60.148 33.333 0.00 0.00 0.00 1.82
699 768 8.168626 CACATCATCAGCATCTTTTTGAATTTG 58.831 33.333 0.00 0.00 0.00 2.32
700 769 7.876068 ACATCATCAGCATCTTTTTGAATTTGT 59.124 29.630 0.00 0.00 0.00 2.83
799 918 8.441312 TTCAACTTAAAAGTAAACAGACCGAT 57.559 30.769 0.00 0.00 38.57 4.18
877 1016 3.537297 GACGCGAACGAGCTGCTC 61.537 66.667 19.53 19.53 43.93 4.26
878 1017 3.955234 GACGCGAACGAGCTGCTCT 62.955 63.158 25.59 9.58 43.93 4.09
879 1018 2.807045 CGCGAACGAGCTGCTCTT 60.807 61.111 25.59 15.32 43.93 2.85
880 1019 2.375766 CGCGAACGAGCTGCTCTTT 61.376 57.895 25.59 22.67 43.93 2.52
881 1020 1.862806 GCGAACGAGCTGCTCTTTT 59.137 52.632 25.59 18.31 0.00 2.27
882 1021 0.235926 GCGAACGAGCTGCTCTTTTT 59.764 50.000 25.59 15.99 0.00 1.94
901 1040 3.594603 TTTTGTGTTTTTGGCGAAGGA 57.405 38.095 0.00 0.00 0.00 3.36
902 1041 3.594603 TTTGTGTTTTTGGCGAAGGAA 57.405 38.095 0.00 0.00 0.00 3.36
903 1042 2.570442 TGTGTTTTTGGCGAAGGAAC 57.430 45.000 0.00 3.81 0.00 3.62
904 1043 1.819288 TGTGTTTTTGGCGAAGGAACA 59.181 42.857 7.90 7.90 0.00 3.18
905 1044 2.231478 TGTGTTTTTGGCGAAGGAACAA 59.769 40.909 11.90 3.81 32.66 2.83
906 1045 3.118956 TGTGTTTTTGGCGAAGGAACAAT 60.119 39.130 11.90 0.00 32.66 2.71
907 1046 3.245048 GTGTTTTTGGCGAAGGAACAATG 59.755 43.478 11.90 0.00 32.66 2.82
908 1047 3.131223 TGTTTTTGGCGAAGGAACAATGA 59.869 39.130 9.08 0.00 0.00 2.57
909 1048 4.116238 GTTTTTGGCGAAGGAACAATGAA 58.884 39.130 0.00 0.00 0.00 2.57
910 1049 4.599047 TTTTGGCGAAGGAACAATGAAT 57.401 36.364 0.00 0.00 0.00 2.57
911 1050 3.574284 TTGGCGAAGGAACAATGAATG 57.426 42.857 0.00 0.00 0.00 2.67
912 1051 2.789213 TGGCGAAGGAACAATGAATGA 58.211 42.857 0.00 0.00 0.00 2.57
913 1052 3.153130 TGGCGAAGGAACAATGAATGAA 58.847 40.909 0.00 0.00 0.00 2.57
914 1053 3.191162 TGGCGAAGGAACAATGAATGAAG 59.809 43.478 0.00 0.00 0.00 3.02
915 1054 3.174375 GCGAAGGAACAATGAATGAAGC 58.826 45.455 0.00 0.00 0.00 3.86
916 1055 3.366273 GCGAAGGAACAATGAATGAAGCA 60.366 43.478 0.00 0.00 0.00 3.91
917 1056 4.409570 CGAAGGAACAATGAATGAAGCAG 58.590 43.478 0.00 0.00 0.00 4.24
918 1057 3.863142 AGGAACAATGAATGAAGCAGC 57.137 42.857 0.00 0.00 0.00 5.25
919 1058 2.494870 AGGAACAATGAATGAAGCAGCC 59.505 45.455 0.00 0.00 0.00 4.85
926 1065 2.068277 GAATGAAGCAGCCCCATCGC 62.068 60.000 0.00 0.00 0.00 4.58
932 1071 2.589540 CAGCCCCATCGCCTTGTA 59.410 61.111 0.00 0.00 0.00 2.41
933 1072 1.524621 CAGCCCCATCGCCTTGTAG 60.525 63.158 0.00 0.00 0.00 2.74
944 1083 0.825840 GCCTTGTAGTGGCCCAAACA 60.826 55.000 0.00 0.00 44.32 2.83
945 1084 0.958822 CCTTGTAGTGGCCCAAACAC 59.041 55.000 0.00 0.00 39.10 3.32
988 1127 1.954382 GCCTCTCCGTTCCAAAGTTTT 59.046 47.619 0.00 0.00 0.00 2.43
1267 1408 4.335647 CGCAAGGTCCAGGTGCCT 62.336 66.667 6.63 0.20 34.73 4.75
1377 1518 2.435410 GGTTGGTAACCCGGCTCG 60.435 66.667 0.00 0.00 46.12 5.03
1465 1619 2.033550 TGTCATTTAAAGCACGCCGTTT 59.966 40.909 0.00 0.00 0.00 3.60
1575 1745 7.462571 AATCCGGACTAGCTTTTAAACATTT 57.537 32.000 6.12 0.00 0.00 2.32
1576 1746 8.570068 AATCCGGACTAGCTTTTAAACATTTA 57.430 30.769 6.12 0.00 0.00 1.40
1592 1762 9.984190 TTAAACATTTAGGTCAAAAATACACCC 57.016 29.630 0.00 0.00 0.00 4.61
1597 1767 2.752903 AGGTCAAAAATACACCCGATGC 59.247 45.455 0.00 0.00 0.00 3.91
1601 1771 2.859538 CAAAAATACACCCGATGCATGC 59.140 45.455 11.82 11.82 0.00 4.06
1614 1784 1.630223 TGCATGCCATGTTCCTTCAA 58.370 45.000 16.68 0.00 0.00 2.69
1646 1816 9.817809 TGTACTAGCACTTTTATCAGGATAAAG 57.182 33.333 12.67 10.28 42.26 1.85
1650 1820 9.494271 CTAGCACTTTTATCAGGATAAAGCATA 57.506 33.333 18.58 11.28 42.26 3.14
1775 1946 7.962934 TTTTCGAACTTAATTGTTCAGTGTG 57.037 32.000 0.00 0.00 44.59 3.82
1839 2010 5.925397 AGAGGATTCTTCATGAATTCGATCG 59.075 40.000 9.36 9.36 44.70 3.69
1888 2059 0.868406 AGCAAGTAAACGTCTGCTGC 59.132 50.000 7.86 0.00 0.00 5.25
1951 2124 5.268118 TCATGATGAAGCTACTGATTCGT 57.732 39.130 0.00 0.00 41.09 3.85
1974 2147 0.178981 ATTGCCACCAACTGAGCACT 60.179 50.000 0.00 0.00 34.37 4.40
1979 2152 0.947244 CACCAACTGAGCACTTGACC 59.053 55.000 0.00 0.00 0.00 4.02
1984 2157 3.144506 CAACTGAGCACTTGACCTGATT 58.855 45.455 0.00 0.00 0.00 2.57
2054 2227 8.144155 TCTAGAAGAATACAGATACACGTGAG 57.856 38.462 25.01 8.71 0.00 3.51
2133 2306 5.741011 AGTTCTTCCGGTGCTTATTATTGA 58.259 37.500 0.00 0.00 0.00 2.57
2328 2505 1.406539 GGATTTGACATTGCCGATGCT 59.593 47.619 0.00 0.00 39.47 3.79
2517 2694 5.157781 GCTGATACGAAGATCCACATACTC 58.842 45.833 0.00 0.00 0.00 2.59
2649 2826 5.813157 GGCAGAAAGGTATTAGTTGAGTCTC 59.187 44.000 0.00 0.00 0.00 3.36
2710 2887 3.326836 TGTATCCGCTGATTTGTGTCA 57.673 42.857 0.00 0.00 32.18 3.58
2750 2927 6.369065 GTCTTGATACGAAGAACAACTTGGAT 59.631 38.462 0.00 0.00 39.13 3.41
2850 3030 7.751047 TGTTATATGTTTGCTTCGACTACTC 57.249 36.000 0.00 0.00 0.00 2.59
2851 3031 6.471198 TGTTATATGTTTGCTTCGACTACTCG 59.529 38.462 0.00 0.00 41.65 4.18
2854 3034 3.047796 TGTTTGCTTCGACTACTCGTTC 58.952 45.455 0.00 0.00 41.02 3.95
2864 3044 4.212847 TCGACTACTCGTTCTATATGCCAC 59.787 45.833 0.00 0.00 41.02 5.01
2880 3060 7.672983 ATATGCCACATACTATTGTGTAAGC 57.327 36.000 4.12 1.66 44.42 3.09
2900 3080 5.904362 AGCTGTGTTGTCTCTTTTTCTTT 57.096 34.783 0.00 0.00 0.00 2.52
2903 3083 5.513141 GCTGTGTTGTCTCTTTTTCTTTGAC 59.487 40.000 0.00 0.00 0.00 3.18
2942 3125 0.612732 AACATGGCTGTGGATGTGGG 60.613 55.000 0.00 0.00 35.22 4.61
2950 3133 2.158623 GCTGTGGATGTGGGGAATGATA 60.159 50.000 0.00 0.00 0.00 2.15
2966 3149 9.067986 GGGGAATGATAAAGTTAACCTAGAATG 57.932 37.037 0.88 0.00 0.00 2.67
2987 3170 5.452078 TGTTGAATTGTCAGATTTGGTCC 57.548 39.130 0.00 0.00 34.49 4.46
2989 3172 5.539574 TGTTGAATTGTCAGATTTGGTCCAT 59.460 36.000 0.00 0.00 34.49 3.41
3005 3188 6.844097 TGGTCCATTTTACCCTTACAAATC 57.156 37.500 0.00 0.00 36.06 2.17
3013 3196 3.053831 ACCCTTACAAATCGACCACAG 57.946 47.619 0.00 0.00 0.00 3.66
3029 3212 4.340894 CCACAGTAATGGTTGTGAATCG 57.659 45.455 6.21 0.00 45.79 3.34
3038 3221 5.607119 ATGGTTGTGAATCGTACAGAAAC 57.393 39.130 0.00 0.00 0.00 2.78
3053 3236 6.358030 CGTACAGAAACTTTTGCATTTCTCTG 59.642 38.462 9.54 9.02 42.03 3.35
3056 3239 6.041296 ACAGAAACTTTTGCATTTCTCTGGAT 59.959 34.615 9.54 0.00 42.03 3.41
3075 3258 0.975556 TCAGTATGGCGAGCCCTTCA 60.976 55.000 12.05 0.00 36.16 3.02
3116 3299 8.898761 CCAAAACATATAGCATTGGTACAGTAA 58.101 33.333 0.00 0.00 42.39 2.24
3189 3372 6.152379 CCATAGTTTCTTTCTTTGGTGCTTC 58.848 40.000 0.00 0.00 32.22 3.86
3307 3640 2.688446 TCCTTCTACAGCGACACCTATG 59.312 50.000 0.00 0.00 0.00 2.23
3362 3701 8.958506 GTCAGTAAGAGTTAGGATCAGACTTTA 58.041 37.037 0.00 0.00 0.00 1.85
3448 3789 5.957842 AAGATCCGACAATTTAACTGCAA 57.042 34.783 0.00 0.00 0.00 4.08
3449 3790 6.515272 AAGATCCGACAATTTAACTGCAAT 57.485 33.333 0.00 0.00 0.00 3.56
3450 3791 6.124088 AGATCCGACAATTTAACTGCAATC 57.876 37.500 0.00 0.00 0.00 2.67
3451 3792 4.695217 TCCGACAATTTAACTGCAATCC 57.305 40.909 0.00 0.00 0.00 3.01
3452 3793 3.442273 TCCGACAATTTAACTGCAATCCC 59.558 43.478 0.00 0.00 0.00 3.85
3453 3794 3.443681 CCGACAATTTAACTGCAATCCCT 59.556 43.478 0.00 0.00 0.00 4.20
3454 3795 4.638421 CCGACAATTTAACTGCAATCCCTA 59.362 41.667 0.00 0.00 0.00 3.53
3455 3796 5.299279 CCGACAATTTAACTGCAATCCCTAT 59.701 40.000 0.00 0.00 0.00 2.57
3456 3797 6.201517 CGACAATTTAACTGCAATCCCTATG 58.798 40.000 0.00 0.00 0.00 2.23
3457 3798 6.469782 ACAATTTAACTGCAATCCCTATGG 57.530 37.500 0.00 0.00 0.00 2.74
3458 3799 5.957774 ACAATTTAACTGCAATCCCTATGGT 59.042 36.000 0.00 0.00 0.00 3.55
3459 3800 6.440328 ACAATTTAACTGCAATCCCTATGGTT 59.560 34.615 0.00 0.00 0.00 3.67
3460 3801 5.913137 TTTAACTGCAATCCCTATGGTTG 57.087 39.130 0.00 0.00 0.00 3.77
3461 3802 3.737559 AACTGCAATCCCTATGGTTGA 57.262 42.857 0.00 0.00 0.00 3.18
3462 3803 3.959495 ACTGCAATCCCTATGGTTGAT 57.041 42.857 0.00 0.00 0.00 2.57
3463 3804 5.387113 AACTGCAATCCCTATGGTTGATA 57.613 39.130 0.00 0.00 0.00 2.15
3464 3805 4.718961 ACTGCAATCCCTATGGTTGATAC 58.281 43.478 0.00 0.00 0.00 2.24
3465 3806 4.165950 ACTGCAATCCCTATGGTTGATACA 59.834 41.667 0.00 0.00 0.00 2.29
3466 3807 4.717877 TGCAATCCCTATGGTTGATACAG 58.282 43.478 0.00 0.00 0.00 2.74
3467 3808 3.503748 GCAATCCCTATGGTTGATACAGC 59.496 47.826 0.00 0.00 0.00 4.40
3468 3809 3.685139 ATCCCTATGGTTGATACAGCG 57.315 47.619 0.00 0.00 0.00 5.18
3469 3810 1.691976 TCCCTATGGTTGATACAGCGG 59.308 52.381 0.00 0.00 0.00 5.52
3477 3818 1.134521 GTTGATACAGCGGACATGGGA 60.135 52.381 0.00 0.00 0.00 4.37
3480 3821 0.179045 ATACAGCGGACATGGGAAGC 60.179 55.000 0.00 0.00 0.00 3.86
3485 3826 2.990479 GGACATGGGAAGCGGAGT 59.010 61.111 0.00 0.00 0.00 3.85
3507 3848 2.807676 CCATAAAGGGTTTGGTCTGCT 58.192 47.619 0.00 0.00 0.00 4.24
3517 3858 1.644509 TTGGTCTGCTTCTCCTGCTA 58.355 50.000 0.00 0.00 0.00 3.49
3521 3862 0.534412 TCTGCTTCTCCTGCTACAGC 59.466 55.000 0.00 0.00 42.50 4.40
3628 3969 5.310068 AGAAGATGTGATATGCATCCCTTCT 59.690 40.000 0.19 8.97 42.58 2.85
3653 3994 4.818546 GCAACACCATGTAATCTCTGCTAT 59.181 41.667 0.00 0.00 0.00 2.97
3667 4008 2.885266 TCTGCTATAGCGAAGGTACCTG 59.115 50.000 17.14 4.84 45.86 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.241213 TCGACTCTTTCCGTGCTCTG 59.759 55.000 0.00 0.00 0.00 3.35
1 2 0.241481 GTCGACTCTTTCCGTGCTCT 59.759 55.000 8.70 0.00 0.00 4.09
2 3 1.066114 CGTCGACTCTTTCCGTGCTC 61.066 60.000 14.70 0.00 0.00 4.26
3 4 1.081376 CGTCGACTCTTTCCGTGCT 60.081 57.895 14.70 0.00 0.00 4.40
4 5 2.087009 CCGTCGACTCTTTCCGTGC 61.087 63.158 14.70 0.00 0.00 5.34
5 6 1.443872 CCCGTCGACTCTTTCCGTG 60.444 63.158 14.70 0.00 0.00 4.94
6 7 2.960170 CCCGTCGACTCTTTCCGT 59.040 61.111 14.70 0.00 0.00 4.69
7 8 2.488087 AAGCCCGTCGACTCTTTCCG 62.488 60.000 14.70 0.00 0.00 4.30
8 9 0.320508 AAAGCCCGTCGACTCTTTCC 60.321 55.000 14.70 0.00 0.00 3.13
9 10 0.790814 CAAAGCCCGTCGACTCTTTC 59.209 55.000 14.70 0.00 0.00 2.62
10 11 1.228657 GCAAAGCCCGTCGACTCTTT 61.229 55.000 14.70 15.76 0.00 2.52
11 12 1.668151 GCAAAGCCCGTCGACTCTT 60.668 57.895 14.70 10.87 0.00 2.85
12 13 2.048127 GCAAAGCCCGTCGACTCT 60.048 61.111 14.70 5.05 0.00 3.24
13 14 2.048127 AGCAAAGCCCGTCGACTC 60.048 61.111 14.70 2.62 0.00 3.36
14 15 2.048127 GAGCAAAGCCCGTCGACT 60.048 61.111 14.70 0.00 0.00 4.18
15 16 3.119096 GGAGCAAAGCCCGTCGAC 61.119 66.667 5.18 5.18 0.00 4.20
16 17 3.296709 GAGGAGCAAAGCCCGTCGA 62.297 63.158 0.00 0.00 0.00 4.20
17 18 2.815647 GAGGAGCAAAGCCCGTCG 60.816 66.667 0.00 0.00 0.00 5.12
18 19 1.448717 GAGAGGAGCAAAGCCCGTC 60.449 63.158 0.00 0.00 0.00 4.79
19 20 1.484444 AAGAGAGGAGCAAAGCCCGT 61.484 55.000 0.00 0.00 0.00 5.28
20 21 1.023513 CAAGAGAGGAGCAAAGCCCG 61.024 60.000 0.00 0.00 0.00 6.13
21 22 0.037447 ACAAGAGAGGAGCAAAGCCC 59.963 55.000 0.00 0.00 0.00 5.19
22 23 2.289694 TGTACAAGAGAGGAGCAAAGCC 60.290 50.000 0.00 0.00 0.00 4.35
23 24 3.045601 TGTACAAGAGAGGAGCAAAGC 57.954 47.619 0.00 0.00 0.00 3.51
24 25 3.937706 CCATGTACAAGAGAGGAGCAAAG 59.062 47.826 0.00 0.00 0.00 2.77
25 26 3.582647 TCCATGTACAAGAGAGGAGCAAA 59.417 43.478 0.00 0.00 0.00 3.68
26 27 3.173151 TCCATGTACAAGAGAGGAGCAA 58.827 45.455 0.00 0.00 0.00 3.91
27 28 2.820178 TCCATGTACAAGAGAGGAGCA 58.180 47.619 0.00 0.00 0.00 4.26
28 29 3.133721 ACATCCATGTACAAGAGAGGAGC 59.866 47.826 0.00 0.00 39.68 4.70
41 42 9.815306 ATCATAACTACTAGAGTACATCCATGT 57.185 33.333 0.00 0.00 44.48 3.21
43 44 9.469097 GGATCATAACTACTAGAGTACATCCAT 57.531 37.037 0.00 0.00 37.44 3.41
44 45 8.670490 AGGATCATAACTACTAGAGTACATCCA 58.330 37.037 0.00 0.00 37.44 3.41
45 46 9.523168 AAGGATCATAACTACTAGAGTACATCC 57.477 37.037 0.00 5.53 37.44 3.51
55 56 9.310449 GGGAGTTCATAAGGATCATAACTACTA 57.690 37.037 3.66 0.00 30.22 1.82
56 57 7.039644 CGGGAGTTCATAAGGATCATAACTACT 60.040 40.741 3.66 0.00 30.22 2.57
57 58 7.091443 CGGGAGTTCATAAGGATCATAACTAC 58.909 42.308 0.00 0.00 0.00 2.73
58 59 6.210784 CCGGGAGTTCATAAGGATCATAACTA 59.789 42.308 0.00 0.00 0.00 2.24
59 60 5.012148 CCGGGAGTTCATAAGGATCATAACT 59.988 44.000 0.00 0.00 0.00 2.24
60 61 5.238583 CCGGGAGTTCATAAGGATCATAAC 58.761 45.833 0.00 0.00 0.00 1.89
61 62 4.286032 CCCGGGAGTTCATAAGGATCATAA 59.714 45.833 18.48 0.00 0.00 1.90
62 63 3.838317 CCCGGGAGTTCATAAGGATCATA 59.162 47.826 18.48 0.00 0.00 2.15
63 64 2.639839 CCCGGGAGTTCATAAGGATCAT 59.360 50.000 18.48 0.00 0.00 2.45
64 65 2.047061 CCCGGGAGTTCATAAGGATCA 58.953 52.381 18.48 0.00 0.00 2.92
65 66 2.047830 ACCCGGGAGTTCATAAGGATC 58.952 52.381 32.02 0.00 0.00 3.36
66 67 1.768870 CACCCGGGAGTTCATAAGGAT 59.231 52.381 32.02 0.00 0.00 3.24
67 68 1.200519 CACCCGGGAGTTCATAAGGA 58.799 55.000 32.02 0.00 0.00 3.36
68 69 0.909623 ACACCCGGGAGTTCATAAGG 59.090 55.000 32.02 5.28 0.00 2.69
69 70 1.470979 CGACACCCGGGAGTTCATAAG 60.471 57.143 32.02 10.05 33.91 1.73
70 71 0.533491 CGACACCCGGGAGTTCATAA 59.467 55.000 32.02 0.00 33.91 1.90
71 72 1.952102 GCGACACCCGGGAGTTCATA 61.952 60.000 32.02 0.00 39.04 2.15
72 73 2.978824 CGACACCCGGGAGTTCAT 59.021 61.111 32.02 2.02 33.91 2.57
73 74 3.998672 GCGACACCCGGGAGTTCA 61.999 66.667 32.02 0.00 39.04 3.18
74 75 2.726822 AAAGCGACACCCGGGAGTTC 62.727 60.000 32.02 20.64 39.04 3.01
75 76 2.814835 AAAGCGACACCCGGGAGTT 61.815 57.895 32.02 10.75 39.04 3.01
76 77 3.239253 AAAGCGACACCCGGGAGT 61.239 61.111 32.02 28.18 39.04 3.85
77 78 2.162338 TACAAAGCGACACCCGGGAG 62.162 60.000 32.02 24.28 39.04 4.30
78 79 2.208619 TACAAAGCGACACCCGGGA 61.209 57.895 32.02 0.00 39.04 5.14
79 80 2.030958 GTACAAAGCGACACCCGGG 61.031 63.158 22.25 22.25 39.04 5.73
80 81 2.030958 GGTACAAAGCGACACCCGG 61.031 63.158 0.00 0.00 39.04 5.73
81 82 2.030958 GGGTACAAAGCGACACCCG 61.031 63.158 0.00 0.00 41.24 5.28
82 83 3.976758 GGGTACAAAGCGACACCC 58.023 61.111 0.00 0.00 43.72 4.61
83 84 1.154197 GAAGGGTACAAAGCGACACC 58.846 55.000 0.00 0.00 0.00 4.16
84 85 1.873698 TGAAGGGTACAAAGCGACAC 58.126 50.000 0.00 0.00 0.00 3.67
85 86 2.623878 TTGAAGGGTACAAAGCGACA 57.376 45.000 0.00 0.00 0.00 4.35
86 87 3.974871 TTTTGAAGGGTACAAAGCGAC 57.025 42.857 0.00 0.00 38.25 5.19
87 88 4.339814 ACATTTTTGAAGGGTACAAAGCGA 59.660 37.500 0.00 0.00 38.25 4.93
88 89 4.616953 ACATTTTTGAAGGGTACAAAGCG 58.383 39.130 0.00 0.00 38.25 4.68
89 90 7.488150 GCTATACATTTTTGAAGGGTACAAAGC 59.512 37.037 0.00 0.00 38.25 3.51
90 91 8.519526 TGCTATACATTTTTGAAGGGTACAAAG 58.480 33.333 0.00 0.00 38.25 2.77
91 92 8.410673 TGCTATACATTTTTGAAGGGTACAAA 57.589 30.769 0.00 0.00 35.81 2.83
92 93 8.301002 GTTGCTATACATTTTTGAAGGGTACAA 58.699 33.333 0.00 0.00 0.00 2.41
93 94 7.668052 AGTTGCTATACATTTTTGAAGGGTACA 59.332 33.333 0.00 0.00 0.00 2.90
94 95 8.051901 AGTTGCTATACATTTTTGAAGGGTAC 57.948 34.615 0.00 0.00 0.00 3.34
95 96 8.644374 AAGTTGCTATACATTTTTGAAGGGTA 57.356 30.769 0.00 0.00 0.00 3.69
96 97 7.539034 AAGTTGCTATACATTTTTGAAGGGT 57.461 32.000 0.00 0.00 0.00 4.34
97 98 7.702348 GCTAAGTTGCTATACATTTTTGAAGGG 59.298 37.037 0.00 0.00 0.00 3.95
98 99 8.243426 TGCTAAGTTGCTATACATTTTTGAAGG 58.757 33.333 0.00 0.00 0.00 3.46
99 100 9.624697 TTGCTAAGTTGCTATACATTTTTGAAG 57.375 29.630 0.00 0.00 0.00 3.02
100 101 9.405587 GTTGCTAAGTTGCTATACATTTTTGAA 57.594 29.630 0.00 0.00 0.00 2.69
101 102 8.572185 TGTTGCTAAGTTGCTATACATTTTTGA 58.428 29.630 0.00 0.00 0.00 2.69
102 103 8.638565 GTGTTGCTAAGTTGCTATACATTTTTG 58.361 33.333 0.00 0.00 32.41 2.44
103 104 7.537306 CGTGTTGCTAAGTTGCTATACATTTTT 59.463 33.333 0.00 0.00 31.87 1.94
104 105 7.021196 CGTGTTGCTAAGTTGCTATACATTTT 58.979 34.615 0.00 0.00 31.87 1.82
105 106 6.403200 CCGTGTTGCTAAGTTGCTATACATTT 60.403 38.462 0.00 0.00 31.87 2.32
106 107 5.064707 CCGTGTTGCTAAGTTGCTATACATT 59.935 40.000 0.00 0.00 31.87 2.71
107 108 4.570772 CCGTGTTGCTAAGTTGCTATACAT 59.429 41.667 0.00 0.00 31.87 2.29
108 109 3.930229 CCGTGTTGCTAAGTTGCTATACA 59.070 43.478 0.00 0.00 31.87 2.29
109 110 3.930848 ACCGTGTTGCTAAGTTGCTATAC 59.069 43.478 0.00 0.00 0.00 1.47
110 111 4.196626 ACCGTGTTGCTAAGTTGCTATA 57.803 40.909 0.00 0.00 0.00 1.31
111 112 3.053831 ACCGTGTTGCTAAGTTGCTAT 57.946 42.857 0.00 0.00 0.00 2.97
112 113 2.536761 ACCGTGTTGCTAAGTTGCTA 57.463 45.000 0.00 0.00 0.00 3.49
113 114 1.675552 AACCGTGTTGCTAAGTTGCT 58.324 45.000 0.00 0.00 0.00 3.91
114 115 2.485266 AAACCGTGTTGCTAAGTTGC 57.515 45.000 0.00 0.00 0.00 4.17
115 116 5.007332 AGTTCTAAACCGTGTTGCTAAGTTG 59.993 40.000 0.00 0.00 0.00 3.16
116 117 5.007332 CAGTTCTAAACCGTGTTGCTAAGTT 59.993 40.000 0.00 0.00 0.00 2.66
117 118 4.510340 CAGTTCTAAACCGTGTTGCTAAGT 59.490 41.667 0.00 0.00 0.00 2.24
118 119 4.084013 CCAGTTCTAAACCGTGTTGCTAAG 60.084 45.833 0.00 0.00 0.00 2.18
119 120 3.810941 CCAGTTCTAAACCGTGTTGCTAA 59.189 43.478 0.00 0.00 0.00 3.09
120 121 3.069872 TCCAGTTCTAAACCGTGTTGCTA 59.930 43.478 0.00 0.00 0.00 3.49
121 122 2.158871 TCCAGTTCTAAACCGTGTTGCT 60.159 45.455 0.00 0.00 0.00 3.91
122 123 2.215196 TCCAGTTCTAAACCGTGTTGC 58.785 47.619 0.00 0.00 0.00 4.17
123 124 3.250040 CCTTCCAGTTCTAAACCGTGTTG 59.750 47.826 0.00 0.00 0.00 3.33
124 125 3.135167 TCCTTCCAGTTCTAAACCGTGTT 59.865 43.478 0.00 0.00 0.00 3.32
125 126 2.701951 TCCTTCCAGTTCTAAACCGTGT 59.298 45.455 0.00 0.00 0.00 4.49
126 127 3.244112 ACTCCTTCCAGTTCTAAACCGTG 60.244 47.826 0.00 0.00 0.00 4.94
127 128 2.970640 ACTCCTTCCAGTTCTAAACCGT 59.029 45.455 0.00 0.00 0.00 4.83
128 129 3.586892 GACTCCTTCCAGTTCTAAACCG 58.413 50.000 0.00 0.00 0.00 4.44
129 130 3.586892 CGACTCCTTCCAGTTCTAAACC 58.413 50.000 0.00 0.00 0.00 3.27
130 131 2.994578 GCGACTCCTTCCAGTTCTAAAC 59.005 50.000 0.00 0.00 0.00 2.01
131 132 2.028385 GGCGACTCCTTCCAGTTCTAAA 60.028 50.000 0.00 0.00 0.00 1.85
132 133 1.549170 GGCGACTCCTTCCAGTTCTAA 59.451 52.381 0.00 0.00 0.00 2.10
133 134 1.183549 GGCGACTCCTTCCAGTTCTA 58.816 55.000 0.00 0.00 0.00 2.10
134 135 0.832135 TGGCGACTCCTTCCAGTTCT 60.832 55.000 0.00 0.00 35.26 3.01
135 136 0.250513 ATGGCGACTCCTTCCAGTTC 59.749 55.000 0.00 0.00 35.26 3.01
136 137 1.207329 GTATGGCGACTCCTTCCAGTT 59.793 52.381 0.00 0.00 35.26 3.16
137 138 0.824759 GTATGGCGACTCCTTCCAGT 59.175 55.000 0.00 0.00 35.26 4.00
138 139 0.824109 TGTATGGCGACTCCTTCCAG 59.176 55.000 0.00 0.00 35.26 3.86
139 140 1.138859 CATGTATGGCGACTCCTTCCA 59.861 52.381 0.00 0.00 35.26 3.53
140 141 1.541233 CCATGTATGGCGACTCCTTCC 60.541 57.143 0.00 0.00 41.75 3.46
141 142 1.871080 CCATGTATGGCGACTCCTTC 58.129 55.000 0.00 0.00 41.75 3.46
152 153 7.615582 ACTTTACACTGATGAACCATGTATG 57.384 36.000 0.00 0.00 0.00 2.39
153 154 7.882791 TGAACTTTACACTGATGAACCATGTAT 59.117 33.333 0.00 0.00 0.00 2.29
154 155 7.220740 TGAACTTTACACTGATGAACCATGTA 58.779 34.615 0.00 0.00 0.00 2.29
155 156 6.061441 TGAACTTTACACTGATGAACCATGT 58.939 36.000 0.00 0.00 0.00 3.21
192 193 9.280456 AGGGAGTATAAATCTACAAGAAAAGGA 57.720 33.333 0.00 0.00 0.00 3.36
196 197 9.268282 ACAGAGGGAGTATAAATCTACAAGAAA 57.732 33.333 0.00 0.00 0.00 2.52
214 215 9.716556 AGAGACTTATATTTAGAAACAGAGGGA 57.283 33.333 0.00 0.00 0.00 4.20
248 249 9.489084 GTGCTATGTATGTAGTCCATATTGAAA 57.511 33.333 0.00 0.00 38.29 2.69
249 250 8.646900 TGTGCTATGTATGTAGTCCATATTGAA 58.353 33.333 0.00 0.00 38.29 2.69
250 251 8.189119 TGTGCTATGTATGTAGTCCATATTGA 57.811 34.615 0.00 0.00 38.29 2.57
251 252 8.831715 TTGTGCTATGTATGTAGTCCATATTG 57.168 34.615 0.00 0.00 38.29 1.90
252 253 9.440773 CATTGTGCTATGTATGTAGTCCATATT 57.559 33.333 0.00 0.00 38.29 1.28
253 254 8.815912 TCATTGTGCTATGTATGTAGTCCATAT 58.184 33.333 0.00 0.00 38.29 1.78
254 255 8.189119 TCATTGTGCTATGTATGTAGTCCATA 57.811 34.615 0.00 0.00 34.86 2.74
255 256 7.066307 TCATTGTGCTATGTATGTAGTCCAT 57.934 36.000 0.00 0.00 37.58 3.41
256 257 6.098266 ACTCATTGTGCTATGTATGTAGTCCA 59.902 38.462 0.00 0.00 0.00 4.02
257 258 6.422100 CACTCATTGTGCTATGTATGTAGTCC 59.578 42.308 0.00 0.00 40.06 3.85
258 259 7.203218 TCACTCATTGTGCTATGTATGTAGTC 58.797 38.462 0.00 0.00 45.81 2.59
259 260 7.112452 TCACTCATTGTGCTATGTATGTAGT 57.888 36.000 0.00 0.00 45.81 2.73
260 261 8.599055 ATTCACTCATTGTGCTATGTATGTAG 57.401 34.615 0.00 0.00 45.81 2.74
261 262 8.424133 AGATTCACTCATTGTGCTATGTATGTA 58.576 33.333 0.00 0.00 45.81 2.29
262 263 7.278135 AGATTCACTCATTGTGCTATGTATGT 58.722 34.615 0.00 0.00 45.81 2.29
263 264 7.725818 AGATTCACTCATTGTGCTATGTATG 57.274 36.000 0.00 0.00 45.81 2.39
264 265 8.424133 TGTAGATTCACTCATTGTGCTATGTAT 58.576 33.333 0.00 0.00 45.81 2.29
265 266 7.706607 GTGTAGATTCACTCATTGTGCTATGTA 59.293 37.037 0.00 0.00 45.81 2.29
266 267 6.536582 GTGTAGATTCACTCATTGTGCTATGT 59.463 38.462 0.00 0.00 45.81 2.29
267 268 6.760298 AGTGTAGATTCACTCATTGTGCTATG 59.240 38.462 0.00 0.00 44.07 2.23
268 269 6.882656 AGTGTAGATTCACTCATTGTGCTAT 58.117 36.000 0.00 0.00 44.07 2.97
269 270 6.286240 AGTGTAGATTCACTCATTGTGCTA 57.714 37.500 0.00 0.00 44.07 3.49
270 271 5.157940 AGTGTAGATTCACTCATTGTGCT 57.842 39.130 0.00 0.00 44.07 4.40
271 272 5.869753 AAGTGTAGATTCACTCATTGTGC 57.130 39.130 0.00 0.00 46.25 4.57
277 278 9.701098 ACGTATTTTAAAGTGTAGATTCACTCA 57.299 29.630 0.00 0.00 46.25 3.41
294 295 9.830294 CACACGGATGTATATAGACGTATTTTA 57.170 33.333 0.00 0.00 36.72 1.52
295 296 8.355169 ACACACGGATGTATATAGACGTATTTT 58.645 33.333 0.00 0.00 36.72 1.82
296 297 7.879070 ACACACGGATGTATATAGACGTATTT 58.121 34.615 0.00 0.00 36.72 1.40
297 298 7.444629 ACACACGGATGTATATAGACGTATT 57.555 36.000 0.00 0.00 36.72 1.89
298 299 7.821359 ACTACACACGGATGTATATAGACGTAT 59.179 37.037 0.00 0.00 36.72 3.06
299 300 7.154656 ACTACACACGGATGTATATAGACGTA 58.845 38.462 0.00 0.00 36.72 3.57
300 301 5.994054 ACTACACACGGATGTATATAGACGT 59.006 40.000 0.00 0.00 36.72 4.34
301 302 6.477669 ACTACACACGGATGTATATAGACG 57.522 41.667 1.97 0.00 36.72 4.18
302 303 7.868775 TGAACTACACACGGATGTATATAGAC 58.131 38.462 1.97 0.00 36.72 2.59
303 304 8.631480 ATGAACTACACACGGATGTATATAGA 57.369 34.615 1.97 0.00 36.72 1.98
306 307 9.639601 CAATATGAACTACACACGGATGTATAT 57.360 33.333 1.97 0.00 36.72 0.86
307 308 8.852135 TCAATATGAACTACACACGGATGTATA 58.148 33.333 1.97 0.00 36.72 1.47
308 309 7.722363 TCAATATGAACTACACACGGATGTAT 58.278 34.615 1.97 0.00 36.72 2.29
309 310 7.102847 TCAATATGAACTACACACGGATGTA 57.897 36.000 1.65 1.65 36.72 2.29
310 311 5.972935 TCAATATGAACTACACACGGATGT 58.027 37.500 0.00 0.00 40.80 3.06
311 312 6.902224 TTCAATATGAACTACACACGGATG 57.098 37.500 0.00 0.00 30.26 3.51
312 313 9.778741 ATATTTCAATATGAACTACACACGGAT 57.221 29.630 0.00 0.00 35.89 4.18
313 314 9.256477 GATATTTCAATATGAACTACACACGGA 57.744 33.333 0.00 0.00 35.89 4.69
314 315 9.261180 AGATATTTCAATATGAACTACACACGG 57.739 33.333 0.00 0.00 35.89 4.94
341 342 9.991906 CCTCCGTTCCTAAATATATGTCTTTTA 57.008 33.333 0.00 0.00 0.00 1.52
342 343 7.937394 CCCTCCGTTCCTAAATATATGTCTTTT 59.063 37.037 0.00 0.00 0.00 2.27
343 344 7.291651 TCCCTCCGTTCCTAAATATATGTCTTT 59.708 37.037 0.00 0.00 0.00 2.52
344 345 6.785963 TCCCTCCGTTCCTAAATATATGTCTT 59.214 38.462 0.00 0.00 0.00 3.01
345 346 6.320518 TCCCTCCGTTCCTAAATATATGTCT 58.679 40.000 0.00 0.00 0.00 3.41
346 347 6.210984 ACTCCCTCCGTTCCTAAATATATGTC 59.789 42.308 0.00 0.00 0.00 3.06
347 348 6.082707 ACTCCCTCCGTTCCTAAATATATGT 58.917 40.000 0.00 0.00 0.00 2.29
348 349 6.607004 ACTCCCTCCGTTCCTAAATATATG 57.393 41.667 0.00 0.00 0.00 1.78
349 350 7.243824 TGTACTCCCTCCGTTCCTAAATATAT 58.756 38.462 0.00 0.00 0.00 0.86
350 351 6.613699 TGTACTCCCTCCGTTCCTAAATATA 58.386 40.000 0.00 0.00 0.00 0.86
351 352 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
352 353 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
353 354 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
354 355 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
355 356 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
356 357 3.435601 GGTATGTACTCCCTCCGTTCCTA 60.436 52.174 0.00 0.00 0.00 2.94
357 358 2.664015 GTATGTACTCCCTCCGTTCCT 58.336 52.381 0.00 0.00 0.00 3.36
358 359 1.685517 GGTATGTACTCCCTCCGTTCC 59.314 57.143 0.00 0.00 0.00 3.62
359 360 2.381911 TGGTATGTACTCCCTCCGTTC 58.618 52.381 0.00 0.00 0.00 3.95
360 361 2.537633 TGGTATGTACTCCCTCCGTT 57.462 50.000 0.00 0.00 0.00 4.44
361 362 2.091499 TCATGGTATGTACTCCCTCCGT 60.091 50.000 0.00 0.00 0.00 4.69
362 363 2.558795 CTCATGGTATGTACTCCCTCCG 59.441 54.545 0.00 0.00 0.00 4.63
363 364 3.829601 CTCTCATGGTATGTACTCCCTCC 59.170 52.174 0.00 0.00 0.00 4.30
364 365 3.829601 CCTCTCATGGTATGTACTCCCTC 59.170 52.174 0.00 0.00 0.00 4.30
365 366 3.467483 TCCTCTCATGGTATGTACTCCCT 59.533 47.826 0.00 0.00 0.00 4.20
366 367 3.574826 GTCCTCTCATGGTATGTACTCCC 59.425 52.174 0.00 0.00 0.00 4.30
367 368 4.215908 TGTCCTCTCATGGTATGTACTCC 58.784 47.826 0.00 0.00 0.00 3.85
368 369 5.854010 TTGTCCTCTCATGGTATGTACTC 57.146 43.478 0.00 0.00 0.00 2.59
369 370 6.620877 TTTTGTCCTCTCATGGTATGTACT 57.379 37.500 0.00 0.00 0.00 2.73
370 371 6.316390 CCTTTTTGTCCTCTCATGGTATGTAC 59.684 42.308 0.00 0.00 0.00 2.90
371 372 6.012858 ACCTTTTTGTCCTCTCATGGTATGTA 60.013 38.462 0.00 0.00 0.00 2.29
372 373 5.222130 ACCTTTTTGTCCTCTCATGGTATGT 60.222 40.000 0.00 0.00 0.00 2.29
373 374 5.256474 ACCTTTTTGTCCTCTCATGGTATG 58.744 41.667 0.00 0.00 0.00 2.39
374 375 5.520748 ACCTTTTTGTCCTCTCATGGTAT 57.479 39.130 0.00 0.00 0.00 2.73
375 376 4.993705 ACCTTTTTGTCCTCTCATGGTA 57.006 40.909 0.00 0.00 0.00 3.25
376 377 3.884037 ACCTTTTTGTCCTCTCATGGT 57.116 42.857 0.00 0.00 0.00 3.55
377 378 3.305608 GCAACCTTTTTGTCCTCTCATGG 60.306 47.826 0.00 0.00 0.00 3.66
378 379 3.318839 TGCAACCTTTTTGTCCTCTCATG 59.681 43.478 0.00 0.00 0.00 3.07
379 380 3.565307 TGCAACCTTTTTGTCCTCTCAT 58.435 40.909 0.00 0.00 0.00 2.90
380 381 3.011566 TGCAACCTTTTTGTCCTCTCA 57.988 42.857 0.00 0.00 0.00 3.27
381 382 5.003804 TCTATGCAACCTTTTTGTCCTCTC 58.996 41.667 0.00 0.00 0.00 3.20
382 383 4.985538 TCTATGCAACCTTTTTGTCCTCT 58.014 39.130 0.00 0.00 0.00 3.69
383 384 5.705609 TTCTATGCAACCTTTTTGTCCTC 57.294 39.130 0.00 0.00 0.00 3.71
384 385 5.833131 TCTTTCTATGCAACCTTTTTGTCCT 59.167 36.000 0.00 0.00 0.00 3.85
385 386 6.084326 TCTTTCTATGCAACCTTTTTGTCC 57.916 37.500 0.00 0.00 0.00 4.02
386 387 6.144563 GCTTCTTTCTATGCAACCTTTTTGTC 59.855 38.462 0.00 0.00 0.00 3.18
387 388 5.985530 GCTTCTTTCTATGCAACCTTTTTGT 59.014 36.000 0.00 0.00 0.00 2.83
388 389 5.984926 TGCTTCTTTCTATGCAACCTTTTTG 59.015 36.000 0.00 0.00 32.12 2.44
389 390 6.160576 TGCTTCTTTCTATGCAACCTTTTT 57.839 33.333 0.00 0.00 32.12 1.94
390 391 5.789643 TGCTTCTTTCTATGCAACCTTTT 57.210 34.783 0.00 0.00 32.12 2.27
391 392 5.536161 TCTTGCTTCTTTCTATGCAACCTTT 59.464 36.000 0.00 0.00 39.98 3.11
392 393 5.048434 GTCTTGCTTCTTTCTATGCAACCTT 60.048 40.000 0.00 0.00 39.98 3.50
393 394 4.457257 GTCTTGCTTCTTTCTATGCAACCT 59.543 41.667 0.00 0.00 39.98 3.50
394 395 4.457257 AGTCTTGCTTCTTTCTATGCAACC 59.543 41.667 0.00 0.00 39.98 3.77
418 420 5.088739 CCACATCTTTAGTTCACATTTCGC 58.911 41.667 0.00 0.00 0.00 4.70
419 421 6.480524 TCCACATCTTTAGTTCACATTTCG 57.519 37.500 0.00 0.00 0.00 3.46
424 426 8.006298 ACAAAAATCCACATCTTTAGTTCACA 57.994 30.769 0.00 0.00 0.00 3.58
437 439 5.136828 ACTCCATGTGTACAAAAATCCACA 58.863 37.500 0.00 0.00 41.58 4.17
444 446 8.138712 GTGGAAATTTACTCCATGTGTACAAAA 58.861 33.333 0.00 0.00 44.69 2.44
485 487 3.628017 CGATGTCAAGTGTTGTTTTCCC 58.372 45.455 0.00 0.00 0.00 3.97
486 488 3.042887 GCGATGTCAAGTGTTGTTTTCC 58.957 45.455 0.00 0.00 0.00 3.13
487 489 3.690422 TGCGATGTCAAGTGTTGTTTTC 58.310 40.909 0.00 0.00 0.00 2.29
488 490 3.773860 TGCGATGTCAAGTGTTGTTTT 57.226 38.095 0.00 0.00 0.00 2.43
489 491 3.314913 TCATGCGATGTCAAGTGTTGTTT 59.685 39.130 0.00 0.00 0.00 2.83
490 492 2.877786 TCATGCGATGTCAAGTGTTGTT 59.122 40.909 0.00 0.00 0.00 2.83
491 493 2.493035 TCATGCGATGTCAAGTGTTGT 58.507 42.857 0.00 0.00 0.00 3.32
492 494 3.677601 GATCATGCGATGTCAAGTGTTG 58.322 45.455 0.00 0.00 29.66 3.33
493 495 2.349580 CGATCATGCGATGTCAAGTGTT 59.650 45.455 0.00 0.00 29.66 3.32
494 496 1.929169 CGATCATGCGATGTCAAGTGT 59.071 47.619 0.00 0.00 29.66 3.55
495 497 2.195922 TCGATCATGCGATGTCAAGTG 58.804 47.619 0.00 0.00 35.01 3.16
496 498 2.584492 TCGATCATGCGATGTCAAGT 57.416 45.000 0.00 0.00 35.01 3.16
497 499 3.062504 TGTTTCGATCATGCGATGTCAAG 59.937 43.478 0.00 0.00 40.35 3.02
498 500 2.999355 TGTTTCGATCATGCGATGTCAA 59.001 40.909 0.00 0.00 40.35 3.18
499 501 2.615869 TGTTTCGATCATGCGATGTCA 58.384 42.857 0.00 0.00 40.35 3.58
500 502 3.867055 ATGTTTCGATCATGCGATGTC 57.133 42.857 3.38 0.00 40.35 3.06
501 503 5.682869 CATTATGTTTCGATCATGCGATGT 58.317 37.500 12.02 0.00 40.35 3.06
502 504 4.552276 GCATTATGTTTCGATCATGCGATG 59.448 41.667 12.02 12.68 40.35 3.84
503 505 4.453478 AGCATTATGTTTCGATCATGCGAT 59.547 37.500 12.02 0.00 37.80 4.58
504 506 3.809279 AGCATTATGTTTCGATCATGCGA 59.191 39.130 12.02 0.00 37.80 5.10
505 507 4.137849 AGCATTATGTTTCGATCATGCG 57.862 40.909 12.02 0.00 37.80 4.73
506 508 7.080099 ACATTAGCATTATGTTTCGATCATGC 58.920 34.615 12.02 9.34 34.47 4.06
512 514 9.203421 CCTGTATACATTAGCATTATGTTTCGA 57.797 33.333 5.91 0.00 37.42 3.71
513 515 9.203421 TCCTGTATACATTAGCATTATGTTTCG 57.797 33.333 5.91 0.00 37.42 3.46
523 525 9.555727 GGAAATTTACTCCTGTATACATTAGCA 57.444 33.333 5.91 0.00 0.00 3.49
524 526 9.555727 TGGAAATTTACTCCTGTATACATTAGC 57.444 33.333 5.91 0.00 33.77 3.09
527 529 9.396022 CTGTGGAAATTTACTCCTGTATACATT 57.604 33.333 5.91 0.00 33.77 2.71
528 530 8.548877 ACTGTGGAAATTTACTCCTGTATACAT 58.451 33.333 5.91 0.00 33.77 2.29
529 531 7.822334 CACTGTGGAAATTTACTCCTGTATACA 59.178 37.037 5.25 5.25 33.77 2.29
530 532 8.038944 TCACTGTGGAAATTTACTCCTGTATAC 58.961 37.037 8.11 0.00 33.77 1.47
552 554 5.013495 CCTATGATCCACCCATAATGTCACT 59.987 44.000 0.00 0.00 0.00 3.41
564 566 2.464582 GGGGGTCCTATGATCCACC 58.535 63.158 0.00 0.00 44.30 4.61
573 575 2.105821 CGCATATTTTCAGGGGGTCCTA 59.894 50.000 0.00 0.00 42.67 2.94
574 576 1.133792 CGCATATTTTCAGGGGGTCCT 60.134 52.381 0.00 0.00 46.26 3.85
580 582 1.533756 CGTTGCCGCATATTTTCAGGG 60.534 52.381 0.00 0.00 0.00 4.45
582 584 2.823196 TCGTTGCCGCATATTTTCAG 57.177 45.000 0.00 0.00 0.00 3.02
583 585 3.773860 ATTCGTTGCCGCATATTTTCA 57.226 38.095 0.00 0.00 0.00 2.69
584 586 5.342259 GGATAATTCGTTGCCGCATATTTTC 59.658 40.000 0.00 0.00 0.00 2.29
588 590 2.747446 GGGATAATTCGTTGCCGCATAT 59.253 45.455 0.00 0.00 0.00 1.78
589 591 2.147958 GGGATAATTCGTTGCCGCATA 58.852 47.619 0.00 0.00 0.00 3.14
590 592 0.951558 GGGATAATTCGTTGCCGCAT 59.048 50.000 0.00 0.00 0.00 4.73
592 594 0.951558 ATGGGATAATTCGTTGCCGC 59.048 50.000 0.00 0.00 0.00 6.53
593 595 2.217750 TGATGGGATAATTCGTTGCCG 58.782 47.619 0.00 0.00 0.00 5.69
594 596 3.612479 GCATGATGGGATAATTCGTTGCC 60.612 47.826 0.00 0.00 0.00 4.52
596 598 4.834357 TGCATGATGGGATAATTCGTTG 57.166 40.909 0.00 0.00 0.00 4.10
597 599 6.885918 TGATATGCATGATGGGATAATTCGTT 59.114 34.615 10.16 0.00 0.00 3.85
598 600 6.317140 GTGATATGCATGATGGGATAATTCGT 59.683 38.462 10.16 0.00 0.00 3.85
640 699 6.173427 AGCTTTTGTAATTGGGATGTGTTT 57.827 33.333 0.00 0.00 0.00 2.83
657 726 4.695396 TGATGTGCACATTTGAAGCTTTT 58.305 34.783 31.82 7.36 36.57 2.27
687 756 9.875675 TGACAAAAAGTTCACAAATTCAAAAAG 57.124 25.926 0.00 0.00 0.00 2.27
698 767 6.382608 TCACGAATTTGACAAAAAGTTCACA 58.617 32.000 4.41 0.00 0.00 3.58
699 768 6.862944 TCACGAATTTGACAAAAAGTTCAC 57.137 33.333 4.41 0.00 0.00 3.18
700 769 9.574458 TTATTCACGAATTTGACAAAAAGTTCA 57.426 25.926 4.41 0.00 32.50 3.18
862 1001 1.891060 AAAAGAGCAGCTCGTTCGCG 61.891 55.000 21.95 0.00 42.98 5.87
880 1019 3.926616 TCCTTCGCCAAAAACACAAAAA 58.073 36.364 0.00 0.00 0.00 1.94
881 1020 3.594603 TCCTTCGCCAAAAACACAAAA 57.405 38.095 0.00 0.00 0.00 2.44
882 1021 3.254892 GTTCCTTCGCCAAAAACACAAA 58.745 40.909 0.00 0.00 0.00 2.83
883 1022 2.231478 TGTTCCTTCGCCAAAAACACAA 59.769 40.909 0.00 0.00 0.00 3.33
884 1023 1.819288 TGTTCCTTCGCCAAAAACACA 59.181 42.857 0.00 0.00 0.00 3.72
885 1024 2.570442 TGTTCCTTCGCCAAAAACAC 57.430 45.000 0.00 0.00 0.00 3.32
886 1025 3.131223 TCATTGTTCCTTCGCCAAAAACA 59.869 39.130 0.00 0.00 0.00 2.83
887 1026 3.712187 TCATTGTTCCTTCGCCAAAAAC 58.288 40.909 0.00 0.00 0.00 2.43
888 1027 4.392921 TTCATTGTTCCTTCGCCAAAAA 57.607 36.364 0.00 0.00 0.00 1.94
889 1028 4.038522 TCATTCATTGTTCCTTCGCCAAAA 59.961 37.500 0.00 0.00 0.00 2.44
890 1029 3.571828 TCATTCATTGTTCCTTCGCCAAA 59.428 39.130 0.00 0.00 0.00 3.28
891 1030 3.153130 TCATTCATTGTTCCTTCGCCAA 58.847 40.909 0.00 0.00 0.00 4.52
892 1031 2.789213 TCATTCATTGTTCCTTCGCCA 58.211 42.857 0.00 0.00 0.00 5.69
893 1032 3.762779 CTTCATTCATTGTTCCTTCGCC 58.237 45.455 0.00 0.00 0.00 5.54
894 1033 3.174375 GCTTCATTCATTGTTCCTTCGC 58.826 45.455 0.00 0.00 0.00 4.70
895 1034 4.409570 CTGCTTCATTCATTGTTCCTTCG 58.590 43.478 0.00 0.00 0.00 3.79
896 1035 4.171754 GCTGCTTCATTCATTGTTCCTTC 58.828 43.478 0.00 0.00 0.00 3.46
897 1036 3.056322 GGCTGCTTCATTCATTGTTCCTT 60.056 43.478 0.00 0.00 0.00 3.36
898 1037 2.494870 GGCTGCTTCATTCATTGTTCCT 59.505 45.455 0.00 0.00 0.00 3.36
899 1038 2.417787 GGGCTGCTTCATTCATTGTTCC 60.418 50.000 0.00 0.00 0.00 3.62
900 1039 2.417787 GGGGCTGCTTCATTCATTGTTC 60.418 50.000 0.00 0.00 0.00 3.18
901 1040 1.551883 GGGGCTGCTTCATTCATTGTT 59.448 47.619 0.00 0.00 0.00 2.83
902 1041 1.188863 GGGGCTGCTTCATTCATTGT 58.811 50.000 0.00 0.00 0.00 2.71
903 1042 1.187974 TGGGGCTGCTTCATTCATTG 58.812 50.000 0.00 0.00 0.00 2.82
904 1043 2.037144 GATGGGGCTGCTTCATTCATT 58.963 47.619 0.00 0.00 0.00 2.57
905 1044 1.700955 GATGGGGCTGCTTCATTCAT 58.299 50.000 0.00 0.00 0.00 2.57
906 1045 0.749091 CGATGGGGCTGCTTCATTCA 60.749 55.000 0.00 0.00 0.00 2.57
907 1046 2.028130 CGATGGGGCTGCTTCATTC 58.972 57.895 0.00 0.00 0.00 2.67
908 1047 2.123428 GCGATGGGGCTGCTTCATT 61.123 57.895 0.00 0.00 0.00 2.57
909 1048 2.517875 GCGATGGGGCTGCTTCAT 60.518 61.111 0.00 3.79 0.00 2.57
910 1049 4.802051 GGCGATGGGGCTGCTTCA 62.802 66.667 0.00 0.00 38.40 3.02
917 1056 1.819632 CACTACAAGGCGATGGGGC 60.820 63.158 0.00 0.00 42.69 5.80
918 1057 1.153168 CCACTACAAGGCGATGGGG 60.153 63.158 0.00 0.00 0.00 4.96
919 1058 1.819632 GCCACTACAAGGCGATGGG 60.820 63.158 0.00 0.00 43.15 4.00
926 1065 0.958822 GTGTTTGGGCCACTACAAGG 59.041 55.000 19.11 0.00 0.00 3.61
932 1071 2.521708 GGCTGTGTTTGGGCCACT 60.522 61.111 5.23 0.00 44.69 4.00
1095 1236 1.673808 GACTTCCATCGGGCTACGGT 61.674 60.000 1.81 0.00 44.45 4.83
1377 1518 4.712763 CTGCAACGAGACATTAGAAAACC 58.287 43.478 0.00 0.00 0.00 3.27
1465 1619 8.877864 ACAATTTTCTCCATAATTACTCACCA 57.122 30.769 0.00 0.00 0.00 4.17
1575 1745 3.942748 GCATCGGGTGTATTTTTGACCTA 59.057 43.478 0.00 0.00 0.00 3.08
1576 1746 2.752903 GCATCGGGTGTATTTTTGACCT 59.247 45.455 0.00 0.00 0.00 3.85
1586 1756 0.818852 CATGGCATGCATCGGGTGTA 60.819 55.000 21.36 0.00 0.00 2.90
1591 1761 1.105167 AGGAACATGGCATGCATCGG 61.105 55.000 26.70 8.15 0.00 4.18
1592 1762 0.742505 AAGGAACATGGCATGCATCG 59.257 50.000 26.70 8.99 0.00 3.84
1597 1767 4.081862 AGTGAATTGAAGGAACATGGCATG 60.082 41.667 25.31 25.31 0.00 4.06
1601 1771 5.707298 AGTACAGTGAATTGAAGGAACATGG 59.293 40.000 0.00 0.00 0.00 3.66
1614 1784 7.766278 CCTGATAAAAGTGCTAGTACAGTGAAT 59.234 37.037 13.75 0.27 0.00 2.57
1646 1816 7.649306 ACACTGAAGTTTGAAAACAGAATATGC 59.351 33.333 8.53 0.00 41.30 3.14
1650 1820 7.601856 TGAACACTGAAGTTTGAAAACAGAAT 58.398 30.769 8.53 0.00 41.30 2.40
1762 1933 6.486657 ACATACTGCTAACACACTGAACAATT 59.513 34.615 0.00 0.00 0.00 2.32
1775 1946 8.642885 CGATCAGATTCAATACATACTGCTAAC 58.357 37.037 0.00 0.00 0.00 2.34
1839 2010 5.696724 ACATACTGCTAGCGTTTATCCAATC 59.303 40.000 10.77 0.00 0.00 2.67
1949 2122 3.242739 GCTCAGTTGGTGGCAATAATACG 60.243 47.826 0.00 0.00 0.00 3.06
1951 2124 3.694072 GTGCTCAGTTGGTGGCAATAATA 59.306 43.478 0.00 0.00 35.09 0.98
1974 2147 7.552687 CACCACTAAGCTAATTAATCAGGTCAA 59.447 37.037 0.00 0.00 0.00 3.18
1979 2152 8.723942 AGAACACCACTAAGCTAATTAATCAG 57.276 34.615 0.00 0.00 0.00 2.90
2076 2249 4.099266 CCAAAAACCATGAGAGAAACACCA 59.901 41.667 0.00 0.00 0.00 4.17
2119 2292 4.884164 AGTTCTGCCTCAATAATAAGCACC 59.116 41.667 0.00 0.00 0.00 5.01
2133 2306 5.021033 CAGATATCTGACAAGTTCTGCCT 57.979 43.478 25.78 0.00 46.59 4.75
2170 2345 2.346766 TTGCTGCAAAGGAGACAGAA 57.653 45.000 13.51 0.00 33.10 3.02
2328 2505 0.662619 CAAGACGAAGCAAGGCAACA 59.337 50.000 0.00 0.00 41.41 3.33
2517 2694 4.700213 ACCTTGATGTTAACAAAGGATCCG 59.300 41.667 31.99 14.80 0.00 4.18
2649 2826 4.560128 ACTGCAGCTATATAATGTGACCG 58.440 43.478 15.27 0.00 0.00 4.79
2710 2887 3.678289 TCAAGACAATGCATAGCACAGT 58.322 40.909 0.00 0.00 43.04 3.55
2750 2927 0.900182 ACCACAGATCTCTCGGCACA 60.900 55.000 0.00 0.00 0.00 4.57
2850 3030 7.953393 CACAATAGTATGTGGCATATAGAACG 58.047 38.462 4.00 0.00 45.47 3.95
2864 3044 7.331934 AGACAACACAGCTTACACAATAGTATG 59.668 37.037 0.00 0.00 0.00 2.39
2880 3060 6.744537 CAGTCAAAGAAAAAGAGACAACACAG 59.255 38.462 0.00 0.00 0.00 3.66
2922 3105 1.340893 CCCACATCCACAGCCATGTTA 60.341 52.381 0.00 0.00 37.65 2.41
2923 3106 0.612732 CCCACATCCACAGCCATGTT 60.613 55.000 0.00 0.00 37.65 2.71
2932 3115 4.536765 ACTTTATCATTCCCCACATCCAC 58.463 43.478 0.00 0.00 0.00 4.02
2966 3149 5.452078 TGGACCAAATCTGACAATTCAAC 57.548 39.130 0.00 0.00 0.00 3.18
2987 3170 6.072397 TGTGGTCGATTTGTAAGGGTAAAATG 60.072 38.462 0.00 0.00 0.00 2.32
2989 3172 5.374921 TGTGGTCGATTTGTAAGGGTAAAA 58.625 37.500 0.00 0.00 0.00 1.52
3013 3196 6.715344 TTCTGTACGATTCACAACCATTAC 57.285 37.500 0.00 0.00 0.00 1.89
3029 3212 6.638468 CCAGAGAAATGCAAAAGTTTCTGTAC 59.362 38.462 15.84 4.30 42.87 2.90
3038 3221 5.640189 ACTGATCCAGAGAAATGCAAAAG 57.360 39.130 0.00 0.00 35.18 2.27
3053 3236 1.004440 GGGCTCGCCATACTGATCC 60.004 63.158 10.51 0.00 37.98 3.36
3056 3239 0.975556 TGAAGGGCTCGCCATACTGA 60.976 55.000 10.51 0.00 37.98 3.41
3075 3258 1.352622 TTTGGGTGAGCCTCCTGTGT 61.353 55.000 1.06 0.00 34.45 3.72
3307 3640 4.664188 GACGTAAGAGAGACAGATTGGTC 58.336 47.826 0.00 0.00 43.62 4.02
3425 3766 5.957842 TGCAGTTAAATTGTCGGATCTTT 57.042 34.783 0.00 0.00 0.00 2.52
3432 3773 4.701956 AGGGATTGCAGTTAAATTGTCG 57.298 40.909 0.00 0.00 0.00 4.35
3448 3789 2.303022 CCGCTGTATCAACCATAGGGAT 59.697 50.000 0.00 0.00 38.05 3.85
3449 3790 1.691976 CCGCTGTATCAACCATAGGGA 59.308 52.381 0.00 0.00 38.05 4.20
3450 3791 1.691976 TCCGCTGTATCAACCATAGGG 59.308 52.381 0.00 0.00 41.29 3.53
3451 3792 2.102420 TGTCCGCTGTATCAACCATAGG 59.898 50.000 0.00 0.00 0.00 2.57
3452 3793 3.452755 TGTCCGCTGTATCAACCATAG 57.547 47.619 0.00 0.00 0.00 2.23
3453 3794 3.494223 CCATGTCCGCTGTATCAACCATA 60.494 47.826 0.00 0.00 0.00 2.74
3454 3795 2.564771 CATGTCCGCTGTATCAACCAT 58.435 47.619 0.00 0.00 0.00 3.55
3455 3796 1.406751 CCATGTCCGCTGTATCAACCA 60.407 52.381 0.00 0.00 0.00 3.67
3456 3797 1.299541 CCATGTCCGCTGTATCAACC 58.700 55.000 0.00 0.00 0.00 3.77
3457 3798 1.134521 TCCCATGTCCGCTGTATCAAC 60.135 52.381 0.00 0.00 0.00 3.18
3458 3799 1.199615 TCCCATGTCCGCTGTATCAA 58.800 50.000 0.00 0.00 0.00 2.57
3459 3800 1.138859 CTTCCCATGTCCGCTGTATCA 59.861 52.381 0.00 0.00 0.00 2.15
3460 3801 1.871080 CTTCCCATGTCCGCTGTATC 58.129 55.000 0.00 0.00 0.00 2.24
3461 3802 0.179045 GCTTCCCATGTCCGCTGTAT 60.179 55.000 0.00 0.00 0.00 2.29
3462 3803 1.220749 GCTTCCCATGTCCGCTGTA 59.779 57.895 0.00 0.00 0.00 2.74
3463 3804 2.045926 GCTTCCCATGTCCGCTGT 60.046 61.111 0.00 0.00 0.00 4.40
3464 3805 3.197790 CGCTTCCCATGTCCGCTG 61.198 66.667 0.00 0.00 0.00 5.18
3465 3806 4.473520 CCGCTTCCCATGTCCGCT 62.474 66.667 0.00 0.00 0.00 5.52
3466 3807 4.467084 TCCGCTTCCCATGTCCGC 62.467 66.667 0.00 0.00 0.00 5.54
3467 3808 2.202932 CTCCGCTTCCCATGTCCG 60.203 66.667 0.00 0.00 0.00 4.79
3468 3809 1.450312 CACTCCGCTTCCCATGTCC 60.450 63.158 0.00 0.00 0.00 4.02
3469 3810 2.109126 GCACTCCGCTTCCCATGTC 61.109 63.158 0.00 0.00 37.77 3.06
3477 3818 0.394352 CCCTTTATGGCACTCCGCTT 60.394 55.000 0.00 0.00 41.91 4.68
3480 3821 1.472480 CAAACCCTTTATGGCACTCCG 59.528 52.381 0.00 0.00 34.14 4.63
3485 3826 2.524306 CAGACCAAACCCTTTATGGCA 58.476 47.619 0.00 0.00 37.77 4.92
3517 3858 4.202264 GCTACTACAGGGATAACATGCTGT 60.202 45.833 6.63 6.63 0.00 4.40
3521 3862 4.039730 AGCAGCTACTACAGGGATAACATG 59.960 45.833 0.00 0.00 0.00 3.21
3539 3880 6.986817 TCCTTCTATAAACTTCATGTAGCAGC 59.013 38.462 0.00 0.00 0.00 5.25
3584 3925 4.661222 TCTGCATCTTGTCCCAACATTTA 58.339 39.130 0.00 0.00 34.73 1.40
3653 3994 2.199117 CCAGCAGGTACCTTCGCTA 58.801 57.895 22.62 0.00 32.29 4.26
3667 4008 5.855740 AGGTATAAGAACAGAGTACCAGC 57.144 43.478 0.00 0.00 37.78 4.85
3702 4043 4.809426 ACGATTTCTAAGCCCAACGAATAG 59.191 41.667 0.00 0.00 0.00 1.73
3708 4049 5.391629 CCAGTTAACGATTTCTAAGCCCAAC 60.392 44.000 0.00 0.00 0.00 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.