Multiple sequence alignment - TraesCS3D01G157900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G157900 chr3D 100.000 2339 0 0 1 2339 126363267 126365605 0.000000e+00 4320
1 TraesCS3D01G157900 chr6A 92.920 1370 87 6 1 1363 371337478 371338844 0.000000e+00 1984
2 TraesCS3D01G157900 chr1B 92.899 1366 90 3 2 1362 611789585 611790948 0.000000e+00 1978
3 TraesCS3D01G157900 chr3B 92.737 1363 88 7 2 1359 418735715 418734359 0.000000e+00 1958
4 TraesCS3D01G157900 chr3B 96.561 756 18 4 1446 2197 180880246 180880997 0.000000e+00 1245
5 TraesCS3D01G157900 chr3B 98.639 147 2 0 2193 2339 180881224 180881370 6.410000e-66 261
6 TraesCS3D01G157900 chr3B 91.398 93 8 0 1363 1455 180874780 180874872 6.780000e-26 128
7 TraesCS3D01G157900 chr6B 92.482 1370 89 6 1 1364 151678477 151679838 0.000000e+00 1947
8 TraesCS3D01G157900 chr7D 92.111 1369 100 5 2 1364 149106981 149105615 0.000000e+00 1923
9 TraesCS3D01G157900 chr7D 91.953 1367 103 4 2 1363 232924944 232926308 0.000000e+00 1908
10 TraesCS3D01G157900 chr4D 92.128 1372 94 11 2 1365 127148114 127149479 0.000000e+00 1923
11 TraesCS3D01G157900 chr2B 92.094 1366 102 3 2 1362 30701338 30702702 0.000000e+00 1919
12 TraesCS3D01G157900 chr2D 92.032 1368 102 4 2 1363 273017908 273019274 0.000000e+00 1916
13 TraesCS3D01G157900 chr3A 93.709 922 34 10 1430 2339 136528435 136529344 0.000000e+00 1360


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G157900 chr3D 126363267 126365605 2338 False 4320 4320 100.000 1 2339 1 chr3D.!!$F1 2338
1 TraesCS3D01G157900 chr6A 371337478 371338844 1366 False 1984 1984 92.920 1 1363 1 chr6A.!!$F1 1362
2 TraesCS3D01G157900 chr1B 611789585 611790948 1363 False 1978 1978 92.899 2 1362 1 chr1B.!!$F1 1360
3 TraesCS3D01G157900 chr3B 418734359 418735715 1356 True 1958 1958 92.737 2 1359 1 chr3B.!!$R1 1357
4 TraesCS3D01G157900 chr3B 180880246 180881370 1124 False 753 1245 97.600 1446 2339 2 chr3B.!!$F2 893
5 TraesCS3D01G157900 chr6B 151678477 151679838 1361 False 1947 1947 92.482 1 1364 1 chr6B.!!$F1 1363
6 TraesCS3D01G157900 chr7D 149105615 149106981 1366 True 1923 1923 92.111 2 1364 1 chr7D.!!$R1 1362
7 TraesCS3D01G157900 chr7D 232924944 232926308 1364 False 1908 1908 91.953 2 1363 1 chr7D.!!$F1 1361
8 TraesCS3D01G157900 chr4D 127148114 127149479 1365 False 1923 1923 92.128 2 1365 1 chr4D.!!$F1 1363
9 TraesCS3D01G157900 chr2B 30701338 30702702 1364 False 1919 1919 92.094 2 1362 1 chr2B.!!$F1 1360
10 TraesCS3D01G157900 chr2D 273017908 273019274 1366 False 1916 1916 92.032 2 1363 1 chr2D.!!$F1 1361
11 TraesCS3D01G157900 chr3A 136528435 136529344 909 False 1360 1360 93.709 1430 2339 1 chr3A.!!$F1 909

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
869 883 0.25589 TGTCCTCCTATGGGCTTTGC 59.744 55.0 0.0 0.0 31.91 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1764 1785 1.515736 GCAGAATCAGCGCCTTTGC 60.516 57.895 2.29 2.17 0.0 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 54 2.428530 GGAAGATGCTTGGATCCCAAAC 59.571 50.000 9.90 0.05 43.44 2.93
81 83 4.469945 CACTAGGAAGATTGTGACCCCTAA 59.530 45.833 0.00 0.00 32.72 2.69
255 263 7.953005 TTGCCTGGAGTTATATGAAAAATGA 57.047 32.000 0.00 0.00 0.00 2.57
256 264 7.953005 TGCCTGGAGTTATATGAAAAATGAA 57.047 32.000 0.00 0.00 0.00 2.57
340 348 1.268992 ATTCCAACGGGATGGGACGA 61.269 55.000 0.00 0.00 44.48 4.20
403 411 4.454504 TCTTGTCCGGCTAAAGTCAAAATC 59.545 41.667 0.00 0.00 0.00 2.17
434 442 1.827969 GGACACTACATGGCACTCTCT 59.172 52.381 0.00 0.00 38.59 3.10
444 452 1.323271 GGCACTCTCTCATGTCGGGA 61.323 60.000 0.00 0.00 0.00 5.14
521 529 3.119245 GGGTGTAGAAGATACGAAGCACA 60.119 47.826 0.00 0.00 0.00 4.57
569 577 2.041216 GAGGTTTGGAAAAGGCTAGGGA 59.959 50.000 0.00 0.00 0.00 4.20
586 594 7.575509 AGGCTAGGGATGGATATGATTATTGAT 59.424 37.037 0.00 0.00 0.00 2.57
616 624 2.497273 TGAGATTGATCGTGCTGGAGAA 59.503 45.455 0.00 0.00 0.00 2.87
619 627 2.084610 TTGATCGTGCTGGAGAAGTG 57.915 50.000 0.00 0.00 0.00 3.16
764 776 5.281376 CACAATTAACTCAAAATGCGACTCG 59.719 40.000 0.00 0.00 0.00 4.18
768 780 3.520290 ACTCAAAATGCGACTCGGATA 57.480 42.857 5.82 0.00 36.82 2.59
825 838 2.336945 ATGCATCATCTTCGAAGGCA 57.663 45.000 24.37 23.31 34.89 4.75
860 874 1.215423 GGGTTGGCAATGTCCTCCTAT 59.785 52.381 1.92 0.00 0.00 2.57
869 883 0.255890 TGTCCTCCTATGGGCTTTGC 59.744 55.000 0.00 0.00 31.91 3.68
904 918 1.202758 ACGCCTCTTTTGACCATGACA 60.203 47.619 0.00 0.00 0.00 3.58
906 920 3.270027 CGCCTCTTTTGACCATGACATA 58.730 45.455 0.00 0.00 0.00 2.29
907 921 3.310774 CGCCTCTTTTGACCATGACATAG 59.689 47.826 0.00 0.00 0.00 2.23
922 936 3.220110 GACATAGTGGAGGGTACGATGA 58.780 50.000 0.00 0.00 35.55 2.92
928 944 1.335132 GGAGGGTACGATGAGGGCAA 61.335 60.000 0.00 0.00 0.00 4.52
1010 1026 1.211457 GGATGTTCTCATGGCAGAGGT 59.789 52.381 12.09 0.55 36.30 3.85
1049 1065 2.165641 GCCTAAATTTAGCGCAAAGGGT 59.834 45.455 23.00 0.00 31.52 4.34
1155 1171 1.645034 CGGCAATCTTCGATGACTGT 58.355 50.000 10.84 0.00 0.00 3.55
1198 1214 8.948853 TTTTGTCATGACTAAATTCGAACATC 57.051 30.769 25.15 0.00 32.70 3.06
1219 1235 8.958119 ACATCGTAATAGAGAGGCAAATAAAA 57.042 30.769 0.00 0.00 0.00 1.52
1286 1303 6.069673 TCAGATTGGTTTGAGGAGCCTATTAA 60.070 38.462 0.00 0.00 0.00 1.40
1312 1329 9.814899 ATGAAATTGTAATGTTTCTCACAAACA 57.185 25.926 2.55 2.55 43.33 2.83
1390 1407 2.933769 GCCATGTGCTTCAAACAGTAC 58.066 47.619 0.00 0.00 36.87 2.73
1391 1408 2.293122 GCCATGTGCTTCAAACAGTACA 59.707 45.455 0.00 0.00 42.68 2.90
1392 1409 3.610114 GCCATGTGCTTCAAACAGTACAG 60.610 47.826 0.00 0.00 41.92 2.74
1393 1410 3.814842 CCATGTGCTTCAAACAGTACAGA 59.185 43.478 0.00 0.00 41.92 3.41
1394 1411 4.319766 CCATGTGCTTCAAACAGTACAGAC 60.320 45.833 0.00 0.00 41.92 3.51
1395 1412 4.137116 TGTGCTTCAAACAGTACAGACT 57.863 40.909 0.00 0.00 34.79 3.24
1396 1413 4.119862 TGTGCTTCAAACAGTACAGACTC 58.880 43.478 0.00 0.00 34.79 3.36
1397 1414 4.141937 TGTGCTTCAAACAGTACAGACTCT 60.142 41.667 0.00 0.00 34.79 3.24
1398 1415 4.210120 GTGCTTCAAACAGTACAGACTCTG 59.790 45.833 4.36 4.36 37.52 3.35
1399 1416 4.099419 TGCTTCAAACAGTACAGACTCTGA 59.901 41.667 13.25 0.00 35.18 3.27
1400 1417 4.683781 GCTTCAAACAGTACAGACTCTGAG 59.316 45.833 13.25 2.45 35.18 3.35
1401 1418 4.855715 TCAAACAGTACAGACTCTGAGG 57.144 45.455 13.25 2.00 35.18 3.86
1402 1419 4.215908 TCAAACAGTACAGACTCTGAGGT 58.784 43.478 13.25 0.02 35.18 3.85
1403 1420 4.278669 TCAAACAGTACAGACTCTGAGGTC 59.721 45.833 13.25 4.59 35.18 3.85
1404 1421 3.799432 ACAGTACAGACTCTGAGGTCT 57.201 47.619 13.25 6.77 46.14 3.85
1410 1427 2.990740 AGACTCTGAGGTCTGAGGTT 57.009 50.000 15.79 3.65 43.89 3.50
1411 1428 2.802719 AGACTCTGAGGTCTGAGGTTC 58.197 52.381 15.79 7.34 43.89 3.62
1412 1429 1.470890 GACTCTGAGGTCTGAGGTTCG 59.529 57.143 15.79 0.00 43.52 3.95
1413 1430 1.202952 ACTCTGAGGTCTGAGGTTCGT 60.203 52.381 15.79 0.00 43.52 3.85
1414 1431 1.201181 CTCTGAGGTCTGAGGTTCGTG 59.799 57.143 6.08 0.00 38.00 4.35
1415 1432 0.244994 CTGAGGTCTGAGGTTCGTGG 59.755 60.000 0.00 0.00 0.00 4.94
1416 1433 0.178973 TGAGGTCTGAGGTTCGTGGA 60.179 55.000 0.00 0.00 0.00 4.02
1417 1434 0.966920 GAGGTCTGAGGTTCGTGGAA 59.033 55.000 0.00 0.00 0.00 3.53
1418 1435 0.969894 AGGTCTGAGGTTCGTGGAAG 59.030 55.000 0.00 0.00 0.00 3.46
1419 1436 0.966920 GGTCTGAGGTTCGTGGAAGA 59.033 55.000 0.00 0.00 0.00 2.87
1420 1437 1.550976 GGTCTGAGGTTCGTGGAAGAT 59.449 52.381 0.00 0.00 0.00 2.40
1421 1438 2.758979 GGTCTGAGGTTCGTGGAAGATA 59.241 50.000 0.00 0.00 0.00 1.98
1422 1439 3.194968 GGTCTGAGGTTCGTGGAAGATAA 59.805 47.826 0.00 0.00 0.00 1.75
1423 1440 4.322499 GGTCTGAGGTTCGTGGAAGATAAA 60.322 45.833 0.00 0.00 0.00 1.40
1424 1441 5.235516 GTCTGAGGTTCGTGGAAGATAAAA 58.764 41.667 0.00 0.00 0.00 1.52
1425 1442 5.120363 GTCTGAGGTTCGTGGAAGATAAAAC 59.880 44.000 0.00 0.00 0.00 2.43
1426 1443 4.963373 TGAGGTTCGTGGAAGATAAAACA 58.037 39.130 0.00 0.00 0.00 2.83
1427 1444 4.994852 TGAGGTTCGTGGAAGATAAAACAG 59.005 41.667 0.00 0.00 0.00 3.16
1428 1445 5.221561 TGAGGTTCGTGGAAGATAAAACAGA 60.222 40.000 0.00 0.00 0.00 3.41
1494 1511 8.982723 AGTTCATGTCACTCATATTAGTTACCT 58.017 33.333 0.00 0.00 34.67 3.08
1695 1716 4.401022 TCTTCAACATGCACAGGAGAAAT 58.599 39.130 0.00 0.00 0.00 2.17
1764 1785 5.830000 TCTTCTTCATCAGCCAATGAATG 57.170 39.130 10.75 6.74 42.97 2.67
1921 1945 7.275920 AGTATGTAGGGCACAGAAATCTAAAG 58.724 38.462 0.00 0.00 41.51 1.85
2018 2045 9.528018 CCATGGAAAATATTTTACAGCGTAAAT 57.472 29.630 25.87 9.10 43.66 1.40
2304 2564 3.328535 AGATTTGGGAACTTGGGTTGT 57.671 42.857 0.00 0.00 35.58 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 8.226810 TCCAAATATTGATGTTATGTCCATCCT 58.773 33.333 0.00 0.00 38.32 3.24
52 54 3.005554 CACAATCTTCCTAGTGGCACAG 58.994 50.000 21.41 14.34 41.80 3.66
109 117 1.933853 GAGACCGGGTCAATCAAATCG 59.066 52.381 27.87 0.00 34.60 3.34
255 263 2.224784 GCAGACCGTACCGAAAACATTT 59.775 45.455 0.00 0.00 0.00 2.32
256 264 1.802365 GCAGACCGTACCGAAAACATT 59.198 47.619 0.00 0.00 0.00 2.71
340 348 4.045022 ACCATATAGGGTTAGGTGTGCTT 58.955 43.478 2.45 0.00 43.89 3.91
403 411 4.201910 CCATGTAGTGTCCGCCATAAAAAG 60.202 45.833 0.00 0.00 0.00 2.27
434 442 1.691976 AGTGAGTGTTTCCCGACATGA 59.308 47.619 0.00 0.00 0.00 3.07
444 452 7.604164 CCTTCATGTGTCTATTAGTGAGTGTTT 59.396 37.037 0.00 0.00 0.00 2.83
521 529 6.346096 TCGCTTTACTACATAGGAAAAGCAT 58.654 36.000 25.07 0.00 46.00 3.79
538 546 3.495434 TTCCAAACCTCCTTCGCTTTA 57.505 42.857 0.00 0.00 0.00 1.85
586 594 4.093408 GCACGATCAATCTCACAAGCTTTA 59.907 41.667 0.00 0.00 0.00 1.85
588 596 2.417933 GCACGATCAATCTCACAAGCTT 59.582 45.455 0.00 0.00 0.00 3.74
616 624 7.569111 AGGAGTAATAGGTATTCCAATGTCACT 59.431 37.037 0.00 0.00 40.35 3.41
619 627 7.878644 GGAAGGAGTAATAGGTATTCCAATGTC 59.121 40.741 0.00 0.00 40.35 3.06
709 717 4.489737 TCCGTCTTTCCCACCATAGATAT 58.510 43.478 0.00 0.00 0.00 1.63
764 776 5.369110 AGAGCTATGATCCCCATTGATATCC 59.631 44.000 0.00 0.00 36.71 2.59
768 780 5.549228 TGTAAGAGCTATGATCCCCATTGAT 59.451 40.000 0.00 0.00 36.71 2.57
860 874 1.000385 CATTGAGTTTCGCAAAGCCCA 60.000 47.619 0.00 0.00 0.00 5.36
869 883 1.531149 AGGCGTCAACATTGAGTTTCG 59.469 47.619 0.00 0.00 38.74 3.46
904 918 2.491086 CCCTCATCGTACCCTCCACTAT 60.491 54.545 0.00 0.00 0.00 2.12
906 920 0.397254 CCCTCATCGTACCCTCCACT 60.397 60.000 0.00 0.00 0.00 4.00
907 921 2.029307 GCCCTCATCGTACCCTCCAC 62.029 65.000 0.00 0.00 0.00 4.02
922 936 1.205893 GTCGTCTCTCAAGATTGCCCT 59.794 52.381 0.00 0.00 33.08 5.19
928 944 5.010933 TCTACCTTTGTCGTCTCTCAAGAT 58.989 41.667 0.00 0.00 33.08 2.40
1010 1026 4.307032 AGGCCAAATTTGAGAGCTAAGA 57.693 40.909 19.86 0.00 0.00 2.10
1177 1193 6.332504 ACGATGTTCGAATTTAGTCATGAC 57.667 37.500 18.47 18.47 43.74 3.06
1198 1214 8.988934 TGCTATTTTATTTGCCTCTCTATTACG 58.011 33.333 0.00 0.00 0.00 3.18
1253 1269 3.057019 TCAAACCAATCTGACGTCGAAG 58.943 45.455 11.62 3.63 0.00 3.79
1260 1277 2.087646 GGCTCCTCAAACCAATCTGAC 58.912 52.381 0.00 0.00 0.00 3.51
1286 1303 9.814899 TGTTTGTGAGAAACATTACAATTTCAT 57.185 25.926 3.58 0.00 38.99 2.57
1370 1387 2.293122 TGTACTGTTTGAAGCACATGGC 59.707 45.455 0.00 0.00 45.30 4.40
1371 1388 3.814842 TCTGTACTGTTTGAAGCACATGG 59.185 43.478 0.00 0.00 0.00 3.66
1372 1389 4.512944 AGTCTGTACTGTTTGAAGCACATG 59.487 41.667 0.00 0.00 33.57 3.21
1373 1390 4.708177 AGTCTGTACTGTTTGAAGCACAT 58.292 39.130 0.00 0.00 33.57 3.21
1374 1391 4.119862 GAGTCTGTACTGTTTGAAGCACA 58.880 43.478 0.00 0.00 35.56 4.57
1375 1392 4.210120 CAGAGTCTGTACTGTTTGAAGCAC 59.790 45.833 12.28 0.00 35.56 4.40
1376 1393 4.099419 TCAGAGTCTGTACTGTTTGAAGCA 59.901 41.667 19.53 0.00 35.56 3.91
1377 1394 4.621991 TCAGAGTCTGTACTGTTTGAAGC 58.378 43.478 19.53 0.00 35.56 3.86
1378 1395 5.221342 ACCTCAGAGTCTGTACTGTTTGAAG 60.221 44.000 19.53 5.71 35.56 3.02
1379 1396 4.649674 ACCTCAGAGTCTGTACTGTTTGAA 59.350 41.667 19.53 0.00 35.56 2.69
1380 1397 4.215908 ACCTCAGAGTCTGTACTGTTTGA 58.784 43.478 19.53 0.00 35.56 2.69
1381 1398 4.279671 AGACCTCAGAGTCTGTACTGTTTG 59.720 45.833 19.53 3.86 45.41 2.93
1382 1399 4.475345 AGACCTCAGAGTCTGTACTGTTT 58.525 43.478 19.53 5.85 45.41 2.83
1383 1400 4.107127 AGACCTCAGAGTCTGTACTGTT 57.893 45.455 19.53 0.20 45.41 3.16
1384 1401 3.799432 AGACCTCAGAGTCTGTACTGT 57.201 47.619 19.53 12.05 45.41 3.55
1392 1409 1.470890 CGAACCTCAGACCTCAGAGTC 59.529 57.143 0.00 0.00 37.01 3.36
1393 1410 1.202952 ACGAACCTCAGACCTCAGAGT 60.203 52.381 0.00 0.00 0.00 3.24
1394 1411 1.201181 CACGAACCTCAGACCTCAGAG 59.799 57.143 0.00 0.00 0.00 3.35
1395 1412 1.248486 CACGAACCTCAGACCTCAGA 58.752 55.000 0.00 0.00 0.00 3.27
1396 1413 0.244994 CCACGAACCTCAGACCTCAG 59.755 60.000 0.00 0.00 0.00 3.35
1397 1414 0.178973 TCCACGAACCTCAGACCTCA 60.179 55.000 0.00 0.00 0.00 3.86
1398 1415 0.966920 TTCCACGAACCTCAGACCTC 59.033 55.000 0.00 0.00 0.00 3.85
1399 1416 0.969894 CTTCCACGAACCTCAGACCT 59.030 55.000 0.00 0.00 0.00 3.85
1400 1417 0.966920 TCTTCCACGAACCTCAGACC 59.033 55.000 0.00 0.00 0.00 3.85
1401 1418 4.451629 TTATCTTCCACGAACCTCAGAC 57.548 45.455 0.00 0.00 0.00 3.51
1402 1419 5.221561 TGTTTTATCTTCCACGAACCTCAGA 60.222 40.000 0.00 0.00 0.00 3.27
1403 1420 4.994852 TGTTTTATCTTCCACGAACCTCAG 59.005 41.667 0.00 0.00 0.00 3.35
1404 1421 4.963373 TGTTTTATCTTCCACGAACCTCA 58.037 39.130 0.00 0.00 0.00 3.86
1405 1422 5.235516 TCTGTTTTATCTTCCACGAACCTC 58.764 41.667 0.00 0.00 0.00 3.85
1406 1423 5.223449 TCTGTTTTATCTTCCACGAACCT 57.777 39.130 0.00 0.00 0.00 3.50
1407 1424 7.605410 TTATCTGTTTTATCTTCCACGAACC 57.395 36.000 0.00 0.00 0.00 3.62
1408 1425 9.543018 CTTTTATCTGTTTTATCTTCCACGAAC 57.457 33.333 0.00 0.00 0.00 3.95
1409 1426 9.280174 ACTTTTATCTGTTTTATCTTCCACGAA 57.720 29.630 0.00 0.00 0.00 3.85
1410 1427 8.842358 ACTTTTATCTGTTTTATCTTCCACGA 57.158 30.769 0.00 0.00 0.00 4.35
1411 1428 9.543018 GAACTTTTATCTGTTTTATCTTCCACG 57.457 33.333 0.00 0.00 0.00 4.94
1412 1429 9.841880 GGAACTTTTATCTGTTTTATCTTCCAC 57.158 33.333 0.00 0.00 0.00 4.02
1413 1430 9.807921 AGGAACTTTTATCTGTTTTATCTTCCA 57.192 29.630 0.00 0.00 27.25 3.53
1416 1433 8.523658 GCCAGGAACTTTTATCTGTTTTATCTT 58.476 33.333 0.00 0.00 34.60 2.40
1417 1434 7.669722 TGCCAGGAACTTTTATCTGTTTTATCT 59.330 33.333 0.00 0.00 34.60 1.98
1418 1435 7.755373 GTGCCAGGAACTTTTATCTGTTTTATC 59.245 37.037 0.00 0.00 34.60 1.75
1419 1436 7.232534 TGTGCCAGGAACTTTTATCTGTTTTAT 59.767 33.333 0.00 0.00 34.60 1.40
1420 1437 6.547880 TGTGCCAGGAACTTTTATCTGTTTTA 59.452 34.615 0.00 0.00 34.60 1.52
1421 1438 5.362430 TGTGCCAGGAACTTTTATCTGTTTT 59.638 36.000 0.00 0.00 34.60 2.43
1422 1439 4.892934 TGTGCCAGGAACTTTTATCTGTTT 59.107 37.500 0.00 0.00 34.60 2.83
1423 1440 4.278419 GTGTGCCAGGAACTTTTATCTGTT 59.722 41.667 0.00 0.00 34.60 3.16
1424 1441 3.821033 GTGTGCCAGGAACTTTTATCTGT 59.179 43.478 0.00 0.00 34.60 3.41
1425 1442 3.820467 TGTGTGCCAGGAACTTTTATCTG 59.180 43.478 0.00 0.00 34.60 2.90
1426 1443 4.098914 TGTGTGCCAGGAACTTTTATCT 57.901 40.909 0.00 0.00 34.60 1.98
1427 1444 6.699575 ATATGTGTGCCAGGAACTTTTATC 57.300 37.500 0.00 0.00 34.60 1.75
1428 1445 7.834181 ACTAATATGTGTGCCAGGAACTTTTAT 59.166 33.333 0.00 0.00 34.60 1.40
1492 1509 6.073765 GCCTATCAACGTGTAATGTATTCAGG 60.074 42.308 0.00 0.00 32.67 3.86
1494 1511 5.756347 GGCCTATCAACGTGTAATGTATTCA 59.244 40.000 0.00 0.00 32.67 2.57
1695 1716 4.405680 TCGAAGCAGAATTGGAGGATAAGA 59.594 41.667 0.00 0.00 0.00 2.10
1764 1785 1.515736 GCAGAATCAGCGCCTTTGC 60.516 57.895 2.29 2.17 0.00 3.68
1809 1830 9.658799 CCAATGGATCTTTATATGTAGGTAGTG 57.341 37.037 0.00 0.00 0.00 2.74
1921 1945 6.040391 TGGGTTTAGCCTCATAATGTATTTGC 59.960 38.462 0.00 0.00 37.43 3.68
2018 2045 5.475719 GTGTACAGCACTGTCCTAATGTTA 58.524 41.667 6.56 0.00 43.74 2.41
2021 2048 2.923655 CGTGTACAGCACTGTCCTAATG 59.076 50.000 6.56 0.00 45.57 1.90
2304 2564 4.626287 GCTCAACCCAGTCCAAATCTGATA 60.626 45.833 0.00 0.00 35.20 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.