>input_sequence_83355
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-------------------------------------------------------ATGGCAGAGGTCTTAGCTCTCAAAT
TTGGCCTAAATTTAGCGCAAAGGGTGGGATGTAATCATCTAATCATCAACTCTGACAATCTGGAGGTGATTGAGACCATG
CAGGACAGAGGACAGTCAGCGGGAGCCGCGGCGGCAATCTTCGATGACTGTTATCACTATGCTTGTGATTTTGTCATGAC
TAAATTCGAACATCGTAATAGAGAGGCAAATAAAATAGCACATGAACTTGCTAGATTAGCTAGATTTTCTTC-GACGTCA
GATTGGTTTGAGGAGCCTATTAATGAAATTGTAATGTTTCTCACAAACAATGTATTGGTTATTGCTAATGAATAA-----
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>chr3D_1_TraesCS3D01G157900
TGAGTGGAGGATGGACATAACATCAATATTTGG-AAGATGCTTGGATCCCAAACTGTGCCACTAGGAAGATTGTGACCCC
TAAGGGGG--G----ACATTTGTTATCAAAAGTCGTCGATTTGATTGACCCGGTCTCCAATAATTGGGATGAGGACCTGA
TTAGACAAACTATGTGGACCATTGACGCACAACGGATTCTTTCAATCCCAATTTCGCAACATAATATGACAGATTTTATT
GCCTGGAGTTATATGAAAAATGAAATGTTTTCGGTACGGTCTGCTTACTCTGTGGAGTGGAATTATCAGTATGGGAGCAA
ACTAAAATATTCCAACGGGATGGGACGAAGCACACCTAACCCTATATGGTGTCAGATATGGAAGTTATCTTGTCCGGCTA
AAGTCAAAATCTTTTTATGGCGGACACTACATGGCACTCTCTCATGTCGGGAAACACTCACTAATAGACACATGAAGGTC
TCGCCCTCTTGCCCTACCTGCTCTCAGGGTGTAGAAGATACGAAGCACATGCTTTTCCTATGTAGTAAAGCGAAGGAGGT
TTGGAAAAGGCTAGGGATGGATATGATTATTGATAAAGCTTGTGAGATTGATCGTGCTGGAGAAGTGACATTGGAATACC
TATTACTCCTTCCAGATCAAGATCTGCGCATTATGGGGTACCAAAATGTTCAAGAAATCATAGCTATCTCAGCTTGATAT
CTATGGTGGGAAAGACGGAAATTAGTGCACAA----TTAACTCAAAATGCGACTCGGATATCAATGGGGATCATAGCTC-
TTACATATAATTTTGTAAATGCATCATCTTCGAAGGCATCCAT-GAAAAAGGGGGGTTGGCAATGTCCTCCTATGGGCTT
TGCGAAACTCAATGTTGACGCCTCTTTTGACCATGACATAGTGGAGGGTACGATGA-G-GGCAATCTTGAGAGACGACAA
AGGTAGATTTATTGCAGGAGGAAATGAAAAGATAGACTACTGCGTGGATGTTCTCATGGCAGAGGTCTTAGCTCTCAAAT
TTGGCCTAAATTTAGCGCAAAGGGTGGGATGTAATCATCTAATCATCAACTCTGACAATCTGGAGGTGATTGAGACCATG
CAGGACAGAGGACAGTCAGCGGGAGCCGCGGCGGCAATCTTCGATGACTGTTATCACTATGCTTGTGATTTTGTCATGAC
TAAATTCGAACATCGTAATAGAGAGGCAAATAAAATAGCACATGAACTTGCTAGATTAGCTAGATTTTCTTC-GACGTCA
GATTGGTTTGAGGAGCCTATTAATGAAATTGTAATGTTTCTCACAAACAATGTATTGGTTATTGCTAATGAATAAAATTT
CGTTTTAACTCAAAAAAAAAACATGAGCCATGTGCTTCAAACAGTACAGACTCTGAGGTCTGAGGTTCGTGGAAGATAAA
ACAGATAAAAGTTCCTGGCACACATATTAGTTATCACAAATAAAAGTTCATGTCACTCATATTAGTTACCTGA----ATA
CATTACACGTTGATAGGCCAAAACATACCAAATCACATGATGTACATGTCACATTCAACAAGTAGAAAAAAGAGCATTAC
ATGGCCCCAAGTTTCATGCTTGACAGGTTATTGCTCAGTGACTCAACAGTTTCATCAGGTGAATCGTCATTTGCATGTAA
AACTGGTTCTGGTTCTTCAACATGCACAGGAGAAATCTTATCCTCCAATTCTGCTTCGAGGTTTCTGAATTCCTCTTCTA
TATCTTCTTCATCAGCCAATGAATGCAAAGGCGCTGATTCTGCATAACAATTGGATCAGAACATAAAAAC-ACTACCTAC
ATATAAAGATCCATTGGTTTGTCACAAATTAAGAAGAAGAAAAAAGTTGCTTCCGTTGCCCAAAGGCC--TATATATATA
GTATGTAGGGCACAGAAATCTAAAGCAAATACATTATGAGGCTAAACCCAGATAATAAAATTATACTCGTATAAGTCACT
GTATGCATGGTTTTACCATGGAAAATATT---TTACAGCGTAAATAACATTAGGACAGTGCTGTACACGCTAACTAGTAA
GTACAACTAAGAACATGATCATTTGCACAAAAATGAATGCCTGTGAGAAATAATGCATATCCATTTCATCTCT-AAACTG
ACTGCACATGGAACTCAAATATGTGTCGTATCAACGGATGATGAAACCAAAACACAAAATAA------------------
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-----------------------------------------------------TATGAAACTAGGTTTCATACCCATTCA
GACGGGTTGGGTTTGGTGCAAAATGAAGAGTCCAGTCAGTATTGGGTTGGCCTGGCTAG-GTTAGATTTGGGAACTTGGG
TTGTATCAGATTTGGACTGGGTTGAGCTTTGAATGTTC
>chr6A_1
TGAGTGGGGGGTGGACATAACATCAACATTTGGGAAGATGCTTGGATCCCAAATTGTGCCACTAGGAAGATTGTGACCCC
TAGGGGGG--G--GGGCACTTGTTACCAAAAGTCGTAGATTTGATTGACCCGGTCTCCAATAATTGGGATGAGGACCTGA
TTAGACAAACTATGTGGACCATTGACGCACAACGGATTCTTTCAATCCCAATTTCGCAACATAATATGACAGATTTTATT
GCCTGGAGTTATATGAAAAATGGTATGTTTTCGGTACGGTCTGCTTACTCTGTGGAGTGGAACTATTAGTATGGGAGCAA
ACTAAAATATTCCAATGGGATGGGATGGAGCACACCTAACCCTATATGGTGTCAGATATGGAAGTTATCTTGTCCGGCTA
AGGTCAA--TTTTTTTATGGCGGACACTACATGGCACTATCCCATGTCAGGCAACACTCACTAATAGACACATGAAGGTC
TCGCCCTCTTGCCCTACCTGCTCTCAGGGTGTAGAAGATACGAAACACTTGCTTTTCCTCTGTAGAAAAGCGAAGGAGGT
TTGGAAAAGGCTAGGGTTGGATATGATTATTGAGAGAGCTTGTGAGATTGATCGTGCTGGAGAGGTAACATTGGAATACC
TATTACTCCTTCCAGATCAACATCTGTGCATTATGGGGTATGAAAATGTTCGAGAAATGATACCTATCTCAGCTTGGTAT
CTATGGTGGGAAAAACGGAGATTAGTGCACAAGGAATTAACTCAAAATGCGACTCAGATCTCAATGGGGATCATAGCTC-
TTACATATAATTTTGTAAATGCATCATCTTCAAAGGTGTCCAT-GAAAAATGGGGGTTGGCAATGTCCTTCTAGGGGCTT
TGTGAAACTCAATGTTGACGCCTCTTTTGACCATGACTTGTTGGAGGGTACGAT-G-G-GGCAGTACTGAGAGACGACAA
AGGTAGGTTTATTGCAGGAGGGAATGGAGAGATAGACTACTGCGCGGATGTTCTCATGGCAGAGGCCTTAGCTCTCAAAT
TTTGCCTAAATTTAGCGCAAAGGGCGGGATGTAATCGCCTAATCATCAACTCTGACAATCTGGAGGTGATTGAGTCCATG
CAGGACGGAGGACAGTCAGCGGGAGCGGCGGCGACAATCTTTGATGACTGCTATCACTATGCTTGTGATTTTATCATGAC
TAAATTCGAACATTGTAATAGAGAGGCAAATAAAGTAGCACATGAACTTGCTAGATTAGCTAGATTTTTTTC-AACTTCG
AATTGGTTTGAGGAGCCTATTAGTGAAATTGTAACGTTTCTCACAAACGATGTATTGGTTATTTCTAATGAATAAAATCT
TGTTTTAATTCAAAAAAAA-------------------------------------------------------------
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>chr6B_1
TGAGTGTGGGATGGACATAACATCTACATTTGGGAAGATGCCTGGATCCCAAATTGTGCCACTAGAAAGATTGTTACCCC
TA----GG--GGAGGGCACTTGTTATCAAAAGTCGTAGATTTGATTGACCCGGTCTCCAACAATTGGGATGAGGACCTGA
TTAGACAAACTATGTGGACCATTGATGCACAATGGATTCTTTCAATCCCAATTTCGCAACATAATATGACAGATTTTATT
GCCTGGAGTTATATGAAAAATGGTATGTTTTCAGTACGTTCTGCTTACTCTGTGGAGTGGAACTATCAGTATGGGAGCAA
ACTAAAATATTCCAACGGGATGGGATGGAGCATACCTAACCCTATATGGTGTCAGATATGGAAGTTATCTTGTCCGGCTA
AAGTCAAATTTTTTGTATGGCAGACACTACATGGCACTCTCCCATGTCGGGCAACACTCACTAATAGGCACATGAAGGTC
TCGCCCTCTTGCCCTACCTGCTCTCAGGGTGTAGAAGATATGAAGCACTTGCTTTTCCTTTGTAGAAAAGCGAAGGAGGT
TTGGAAAAGGCTAGGGTTGGATTTGATTATTGAGA--GCTTGTGAGATTGATCGTGCTGGAGAGGCAACATTGGAATACC
TATTACTCCTTCCAGATCAACATCTGCGCATTATGGGGTACGAAAATGTTCAAGAAATGATAGCTATCTCAGCTTGGTAT
CTATGGTGGGAAAGAAGGAAATTAGTGCACAAGGAACTAACTCAAAATGCGACTCAAATCTCAATGGGGATCATAGCTC-
TTACATATAGTTTTGTAAACGCATCATCTTCAAAGCTGTCCAT-GAAAAAGGGGGGTTGGCAATGTCCTTCTAGGGGCTT
TGTGAAACTCAATGTTGATGCCTCTTTTGACCATGACTTGTTGGAGGGTACGAT-GAG-GGCAGTATTGAGAGACAACAA
AGGTAGATTTATTGCAGGAGGGAATGGAAAGATAGACTACTGCGCGGATGTTCTCATGGCAGAGGCCTTAGCTCACAAAT
TTGGCCTAAATTTAGCGCAAAGGGCAGGATGTAATCGCCTAATCATCAACTCTGACAATCTGGAGGTGATTGAGACCATG
CAGGACGGAGGACAGTCAGCGGGAGCGGCGGCGGCAATCTTCGATGACTGCTATCACTATGCTTGTGATTTTATCATGGC
TAAATTCGAACATTGTAATAGAGAGGCAAATAAAGTAGCACATGAACTTGCTAGATTAGCTAGGTTTTTT-CTGACTTCG
GATTGGTTTGAGGAGCCTATTACTGAAATTGTGATGTTTCTCACAA-----GTATTGATTATTGCTAATGAATAAAATTT
CGTTTTAATTCAAAAAAAAA------------------------------------------------------------
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--------------------------------------
>chr1B_2
-GAGTGGGGGATGGACATAACATCAACATTTGGGAAGATGCCTGGATCCCAAATTGTGCCACTAGGAAGATTGTTACCCC
TA----GG--GGAGGACACTTGTTATCAAAAGTCGTAGATTTGATTGACCCGATCTCCAATAATTGGGATGAGGACCTGA
TTAGACAAACTATGTGGACCATTGATGCACAACGGATTCTTTCAATCCCAATTTCGCAACATAATATGACATATTTTATT
GCCTGGAGTTATACAAAAAATGGTATGTTTTCAGTACGGTCTGCTTACTCTCTGGAGTGGAACTATCAGTATGGGAGCAA
ACTAAAATATTCCAACGGGATGGGACGGAGCACACCTAACCCTATATTGTGTTAGATATGGAAGTTAGATTGTCCGGCTA
AAGTCAA--TTTTTTTATGGCGGACACTACATGGTACTCTCCCATGTCGGGCAACACTCACTAATAGACACATGAAGGTC
TCGCCCTCTTGCCCTACCTGCTCTCAGGGTGTAGAAGATATGAAGCACTTGCTTTTCCTTTGCAGAAAAGCGAAGGAGGT
TTGGAAAAGGCTAGGGTTGGATTTGATTATTGAGAGAGCTTGTGAGATTGATTGTGCTGGAGAGGCAACATTGGAATACC
TATTACTCCTTGCAGATCAACATCTGCGCATTATGGGGTACGAAAATGTTCGAGAAATGATAGCTATCTCAGCTTGCTAT
CTATGGTGGGAAAGAAGGAAATTAGTGCACAAGGAACTAACTCAAAATGCGACTCAAATCTCAATGGGGATCATAGCTC-
TTACATATAATTTTGTAAACGCATCATCTTCGAAGGTGTCCAT-GAAAAAGGGGGGTTGGCAATGTCCTTCTAGGGGCTT
TGTGAAACTCAATGTTGATGCCTCTTTTGACCATGACTTGTTGGAGGGTACGACGG-G-GGCAGTATTGAGAGACGACAA
AGGTAGATTTATTGCAGGAGGGAATGGAAAGATAGACTACTGCGCGGATGTTCTCATGGCAGAGGCCTTAGCTCTCAAAT
TTGGCCTAAATTTAGCGCAAAGGGCAGGATGTAATCGCCTAATCATCAACTCTGACAATCTGGAGGTGATTGAGACCATG
CAGGACGGAGGACAGTCAGCAGGAGCGGCGGCGGCAATCTTCGATGACTGCTATCACTATGCTTGTGATTTTATCATGAC
TAAATTCGAACATTGTAATAGAGAGGCAAATAAAGTAGCACATGAACTTGCTAGATTAGCTAGGTTTTTTTC-GACTTCG
GATTGGTTTGAGGAGCCTATTAGTGAAATTGTAATGTTTCTCACAAATGATGTATTGGTTATTGCTAATAAATAAAATTT
CGTTTTAATTCAAAAAAA--------------------------------------------------------------
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--------------------------------------
>chr3B_2
-GAGCGGGGGATGGACATAACATCAATATTTGGGAAGATGCCTGGATCCCAAATTGTGCCACTAGGAAGATTGTGACCCC
TA----GG--G--GGGCATTTGTTATCAAAAGTCGTAGATTTGATTGACCCGG-CTCCAATAATTGGGATGAGGACCTAA
TTAGACAAACTATGTGGACCATTGACGCACAACGGGTTCTTTCAATCCTAGTTTCGCAATATAATATGACAGATTTTATT
GCCTGGAGTTATACGAAAAATGGTATGTTTTCGGTACGGTCTGCTTACTCTGTGGAGTGGAACTATCAATATTGGAGCAA
ACTAAAATATTCCAACGGGATGGGACGGAGCACACCTAACCCTATATGGTGTCAGATATGGAAGTTATCTTGTCCGGCTA
AAGTCA---TTTTTTTATGGCGGACACTACATGGCACTCTCCCATGTCGGGCAACACTCACTAATAGACACATGAAGGTC
TCTCCCTCTTGCCCTACCTGCTCTCAGGGTGTAGAAGATATGAAGCACTTGCTTTTCCTATGTAGAAAAGCCAATGAGGT
TTGGAAAAGGCTAGGGTTGGATATGATTATTGAGAGAGCTTGTGAGATTGGTCGTGCTGGAGAGGCAACATTGGAATACC
TATTACTCCTTCCAGATCAAGATCCGCACATTATGGGGTATGGAAATGTTCGAGAAATGATAGCTATCTCAGCTTCGTAT
CTTTGGTGGGAAAGACAGAAATTAGTGCACAAGGAATTAACTCAAAATGCGACTCAGATTTCAATGGGGATTATAGCTC-
TTACATATAATTTTGTAAATGCATCATCTTCCAAGGCTTCCAT-GAAAAAGGGGGGTTGGCAATGTCCTCCTAGGGGCTT
TGTGAAACTCAATGTTGACGGCTCTTTTGACCATGACTTGCTGGAGGGTACGATGG-G-GGCAGTCTTGAGAGACGACAA
AGGTAGGTTTATTGCAGGAGGAAATGGAAAGATAAACTACTGCGCAGATGTTCTCATGGCGGAGGCCTTAGCTCTCAAAT
TTGGCCTAAATTTAGCGCAAAGGGCGGGATGTAATCGCATAATCATCAACTCTGACAATATGGAGGTGATTGAGACCATG
TAGGACGGAGGACAGTCAGCGGGAGCGGCGGCGACAATCTTCCATGACTGCTATCACTATGCTTGTGATTTTATCATGAC
TAAATTCGAACATTGTAATAGAGAGGCAAATAAAGTAGCACATGAACTAGCTAGATTAGCTAGATTTTTTTC-GACTTCG
GATTGGTTTGAGGAGCCTATTAGTGAAATTGTAACGTTTCTCACAAACGATGTATTGGTTATTGCTAATGAATAAAATTT
TGTTTTATTTCAAAA-----------------------------------------------------------------
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--------------------------------------
>chr7D_2
-GAGTGGGGGATGGACATAACATCAATATTTGGGAAGATGCCTGGATCCCAAATTGTGCCACTAGAAAGATTGTGACCCC
AA----GGAGG--GGGCATTTATTATCAAAAGTTGTAGATTTGATTGACCCGGTCTCCAATGATTGGGATGAGGACCTGA
TTAGACAAACTATGTGGACCATTGACGCACAACGGATTCTTTCAATCCCAATTTCGCAACATAATATGACATATTTTATT
GCCTGGAGTTATACAAAAAATGGTCTGTTTTCGGTACGGTCTACTTACTCTGTGGAGTGGAACTATCAGTATGGGAGCAA
ACTAAAATATTCCAACGGGATGGGACGGAGCACACGTAACCCTATATGGTGTCAGATATGGAAGTTATCTTGTCCGGCTA
AAGTCAAAATATTTTTATGGCGGACACTACATGGTACTCTTCCATGTCGGGCAACACTCACTAATAGACACATGAAGGTC
TCACCCTTGTGTCCTACATGCTCCCAGGGTGTAGAAGATACAAAGCACTTGCTTTTCCTATGTAGAAAAGCGAAGGAGGT
TTGGAAAAGGCTAGGGTTGGATATGATTATTGAGAGAGCTTGTGAGATTGATCGTGCTGGGGAGGCAATACTGGAATACT
TATTACTCCTTCCAGATCAAGATCTGCGCATTATGGGGTACGAAAATGTTCGAGAAATGGTAGCTATCTCTGCGTGGTAT
CTATGGTGGGAAAGAAGGAAATTAGTGCATAAGGAATTCACTCAAAATGCGACTCAGATCTCAATGGGGATCATAGCTC-
TTACATATAATTTTGTAAATGCATCATCTTCAAATGCGTCCAT-AAAAAAGGGGGGTTGGCAATGTCCTCCTAGGGGCTT
TGTGAAACTCAATATTGACGCCTCTTTTGACCATGACTTGCTGGAGGGTACGATGG-G-GGCAGTACTGAGAGACGACAA
AGGTAGGTTTATTGCAGGAGGGAATGAAAAGATAGACTACTGTGCGGACGTTCTCATGGCGGAGGCCTTAACTCTCAAAT
TTGGCCTAAATTTAGCGCAATGGGCGGGATGTAATCACCTAATCATCAACTCTGACAATCTGGAGGTGGTTGAGACAATG
CAAGACGGAGGACAGTCAGCGGGAGCGGCGGCGGCAATCTTCGATGACTGCTATCACTATGCTTGTGATTTTATCATGAC
TAAATTCGAACATTGTAATAGAGAGGCAAATAAAGTAGCACATGAACTTGCTAGATTAGCTAGATTTTTTTC-GACTTCG
GTTTGGTTTGAGGAGCCTATTAGTGAAATTGTAACATTTCTCACAAACGATGTATTGATTATTGCTAATGAATAAAATTT
CGTTTATTTCAAAAAAAAA-------------------------------------------------------------
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--------------------------------------
>chr7D_2
-GAGTGGGGGATGGACATAACATCAATATTTGGGAAGGTGCCTGGATCCCAAATTGTGCCACTAGGAAGATTGTGACCCC
TA----GGAGG--GGGCATTTATTATCAAAAGTTGTAGATTTGATTGACCCGGTCTCCAATGATTGGGATGAGGACCTGA
TTAGACAAACTATGTGGACCATTGACGCACAACGGATTCTTTCAATCCCAATTTCGCAACATAATATGACAGATTTTATT
GCCTGGAGTTATACGAAAAATGGTCTGTTTTCAGTACGGTCTGCTTACTCTGTGGAGTGGAACTATCAGTATGGGGGCAA
ACTAAAATATTCCAACGGGATGGGACAGAGCACACGTAACCCTATATGGTGTCAGATATGGAAGTTATCTTGTCCGGCTA
AAGTCAAAATATTTTTATGGCGGACACTACATGGTACTCTTCCATGTCGGGCAACACTCACTAATAGACACATGAAGGTC
TCACCCTTGTGTCCTACATGCTCCCAGGGTGTAGAAGATACAAAGCACTTGCTTTTCCTATGTAGAAAAGCGAAGGAGGT
TTGGAAAAGGCTAGGGTTGGATATGATTATTGAGAGAGCTTGTGAGATTGATCGTGCTGGGGAGGCAATACTGGAATACT
TATTACTCCTTCCACATCAAGATCTGCGCATTATGGGGTACGAAAATGTTCGAGAAATGGTAGCTATCTCTGCTTGGTAT
CTATGGTGGGAAAGAAGGAAATTAGTGCATAAGGAATTCACTCAAAATGCGACTCAGATCTCAATGGGGATCATAGCTC-
TTACATTTAATTTTCTAAATGCATCATCTTCAAATGCGTCCAT-AAAAGAGGGGGGTTGGCAATGTCCTCCTAGGGGCTT
TGTGAAACTCAATGTTGACGCCTCTTTTGACCATGACTTGCTGGAGGGTACGAT-G-G-GGCAGTATTGAGAGACGACAA
AGGTAGGTTTATTGCAGGAGGGAATGGAAAGATAGACTACTGTGCGGACGTTCTCATGGCGGAGGCCTTAGCTCTCAAAT
TTGGCCTAAATTTAGCGCAAAGGGCGGGATGTAATCGCCTAATCATCAACTCTGACAATCTGGAGGTGGTTGAGACAATG
CAAGACGGAGGACAGTCAGCGGGAGCGGCGGCGGCAATCTTCGATGACTGCTATCACTATGCTTGTGATTTTATCATGAC
TAAATTCGAACATTGTAATAGAGAGGCAAATAAAGTAGCACATGAACTTGCTACATTAGCTAGATTTTTTTC-GACTTCG
GTTTGGTTTGAGGAGCCTATTAGTGAAATTGTAACATTTCTCACAAACGATGTATTGGTTATTGCTAATGAATAAAATTT
TGTTTATTTCAAAAAAAA--------------------------------------------------------------
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>chr4D_2
-GAGTGGGGGATGGACAAAACATCAATATTTGAGAAGATGTCTGGATCCCAAATTGTGCCACTAGGAAGATTGTGACCCC
TA----GG--G--GCGCATTTGTTATCAAAAGTCGTAGATTTGATTGACCCGGTCTCCAATAATTGGGATGAGGACCTGA
TTAGACAAACTATGTGGACCATTGACGCACAACGGATTCTTTTAATTCCAATTTCGCAACATAATATGACATATTTTATT
GCCTAGAGTTATACGAAAAATGGTATGTTTTTGGTACGGTCTGCTTACTCTGTGGAGTGGAACTATCAGTATGGGAGCAA
ACTAAAATATTCTAACGGGATGGGACGGAGCACACCTAACCCTATATAGTGTCAGATATGGAAGTTATCTTGTCCGGCTA
AAGTCAAAAAAAA-TTATGCCGGACACTACATGGCACTCTCCCATGTCAGGCAACACTCACTAATACACACATGAAGGTC
TCGTCCTCTTGCCCTACCTGCTCTCAGGGTGTAGAGGATACGAAGCACTTGCTTTTCCTATGTAGAAAAGCAAAGGAGGT
TTGGAAAAGGCTAGGGTTGGATATGATTATTGAGAGAGCTTGTGAGATTGATCGTGCTGGAGAGGCAACAATGGAATACC
TATTACTCCTTCCACATCAAGATCTACGCATTATGGGGTACGAAAATATTCGAGAAATGATA-CTATCTCAGCTTAGTAT
CTATGGTGGGAAAGACGGAAATTAGTGCACAAGGAATTAACTCAAAATGCGACCCAGATCTCAATGGGGATCATAGCTC-
TTACATATAATTTTGTAAATGCAT-ATCTTCAAAGGCGTCCATGAAAAAGGGGGGGTTGGCAATGTCCTTCTAGGGGCTT
TGTGAAACTCAATGTTGACGCCTCTTTTGACCATGACTTGCTGGAGGGTACGAT-G-GGGATAGTATTGAGAGACGACAA
AGGTAAGTTTATTGCAGAGGGGAATGGAAAGATAAACTACTGCGCGGATGTTCTCATGGCGGAGGCCTTAGCTCTCAAAT
TTGGCCTAAATTTAGCGCAAAGGGCGGGATGTAATCGTCTAATCATCAACTCTGACAATCTGGAGGTGATTGAGACCATG
CAGGACGGAGGACAGTCAGCGAGAGCGGCGGCGGCAATCTTCGATGACTGCTATCACTATGCTTGTGATTTTATCATGAC
TAAATTCAAACATTGTAATAAAGAGGCAAATAAAGTAGCACATGAACTTGTTAGATTAGCTAGATTTTTTTCTGACTTCA
GACTGGTTTGAGGAGTCTATTAGTGAAATTGTAACGTTTCTCACAAATGATGTATTGGTTATTGCTAATGAATAAAATTT
CGTTTTATTTCAAAAAAAAAA-----------------------------------------------------------
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>chr2B_2
-GAGTGGGGGATGGACATAACATCAACATTTGGGAAGATGCCTGGATCCCAAATTGTGCCACTAGGAAGATTGTTACCCC
TA----GG--GGAGGGCACTTGTTATCAAAAGTCGTAGATTTGATTGGCCCGGTCTCCAATAATTGGGATGAGGACCTGA
TTAGACAAACTATGTGGACGACTGACGCACAACGGATTCTTTCAATCCCAATTTCACAACATAATATGACAGATTTTATT
GCCTGGAGTTATACGAAAGATGGTATATTTTCGGTACAGTCTGCTTACTCTGTGGAGTGGAACTATCAGTATGGGAGCAA
ACTAAAATATTCCAACGGGATGGGACGGAGCACACCTAACCCTATATGGTGTCAGATATGGAAGTTATCTTGTCAGGCTA
AAGTCAA-TTTTTTTTATGGCGGACACTACATGGCACTCTCCCATGTTGGGGAACAGTCACTAATACACACATGAAGGTC
TCGCCCTCTTGCCTTACCTGATCTCAGGGTGTAGAAGATACGAAGAAATTGCTTTTCCTTTGTAGAAAAGTGAAGGAGGT
TTGGAAAAGGCTAGGGTTGGATTTGATTATTGAGAGAGCTTGTGAGATCGATCGTGCTGGAGAGGCAACATTGGAATACC
TATTACTCCTTCCAGATCAACATCTACGCATTATGGGGTACGAAAATGTTCGAGAAATGATAGCTATCTCAGCTTGGTAT
CTGTGGTGGGAAAGATGGAAATTAGTGCACAAGGAACTAACTCAAAATGCGACTCAAATCTCAATGGGGATCATGGCTC-
TTACATATAATTTTGTAAACGCATCAACTTCAAAGGCGTCCAT-GAAAAAGAAGGGTTGGCAATGTCCTTCTAGGGGCTT
TGTGAAACTCAATGTTGATGGCTATTTTGACCATGACTTGTTGGAGGGTACGAT-G-GGGGCAGTATTGAGAGACGACAA
AGGTCGGTTTATTGCAGGAGGGAATGGAAAGATAGACTACTGCGTGGATGTTCTCAGGGCAGAGGCCTTAGCTCTCAAAT
TTGGCCTAAATTTAACGCAAAGGGCGGGATGTAATCGGCTAATCATCAACTCTGACAATCTGGAGGCGATTGAGACCATG
CAGGACAGAGAACAGTCAGCGGGAGCGGCGGCAGCAATCTTCGATGACTGCTATCACTATGCTTGTGATTTTATCATGAC
TAAATTCGAACATTGTAATAGAGAGGCAAATAAAGTAGCACATGAACTTGCTAGATTAGCTAGGTTTTTTTC-GACTTCG
GATTGGTTTGAGGAGCCTATTAGTGAAATTGTAATGTTTCTCACAAACGATGTATTGGTTATTGCTAATGAATAAAATTT
CGTTTTAATTCAAAAAAA--------------------------------------------------------------
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--------------------------------------
>chr2D_2
-GAGTGGGGGATGGACATAACATCAATATTTGGGAAGATGCCTGGATCCCAAATTGTGCCACTAGGAAGATTGTGACCCC
T--GGGAG--G--GGGCATTTATTATCAAAAGTTGTAGATTTGATTGACCCGGTCTCCAATGATTGGGATGAGGACCTGA
TTAGACAAACTATGTGGACCATTGACGCACAACGGATTCTTTCAATCCCAATTTCGCAACATAATATGACAGATTTTATT
GCTTGGAGTTATACGAAAAATGGTCTGTTTTCGGTACGGTCTGCTTACTCTGTGGAGTGGAACTATCAGTATGGGAGCAA
ACTAAAATATTCCAACGGGATGGGACGGAGCACACGTAACCCTATATGGTGTCAGATATGGAAGTTATCTTGTCCGGCTA
AAGTCAAAATATTTTTATGGCGGACACTACATGGTACTCTTCCATGTCGGGCAACACTCACTAATAGACACATGAAGGTC
TCACCCTTGTGTCCTACATGCTCCCAGGGTGTAGAAGATACAAAGCACTTGCTTTTCCTATGTAGAAAAGCGAAGGAGGT
TTGGAAAAGGCTAGGGTTAGATATGATTATTGAGAGAGCTTGTGAGATTGATCGTGCCGGGGAGGCAATACTGGAATACT
TATTACTCCTTCCAGATCAAGATCTGCGCATTATGGGGTATGAAAATGTTCGAGAAATGGTAGCTATCTCTGCTCGGTAT
CTATGGTGGGAAAGAAGGAAATTAGTGCATAAGGAATTCACTCAAGATGCGACTCAGATCTCAATGGGGATCATAGCTCT
TTACATATAATTTTGTAAATGCATCATCTTCAAATGCGTCCAT-AAAAAGGGGGGGTTGGCAATGTCCTCCTAGGGGCTT
TGTGAAACTCAATGTTGACGCCTCTTTTGACCATGACTTGCTGGAGGGTACGAT-G-GGGGCAGTATTGAGAGACGACAA
AGGTAGGTTTATTGTAGGAGGGAATGGAAAGATAGACTACTGTGCGGATGTTCTCATGGCGGAGGCCTTAGCTCTCAAAT
TTGGCCTAAATTTAGCGCAAAGGGCGGGATGTAATCGCCTAATCATCAACTCTGACAATCTGGAGGTGGTTGAGACAATG
CAAGACGGAGGACAGTCAGCGGGAGCGGCGGCGGCAATCTTCGATGACTGCTATCACTATGCTTGTGATTTTATCATGAC
TAAATTCGAACATTGTAATAGAGAGGCAAATAAAGTAGCACATGAACTTGCTAGATTAGCTAGATTTTTTTC-GACTTCG
GTTTGGTTTGAGGAGCCTATTAGTGAAATTGTAACATTTCTCACAAACGATGTATTGGTTATTGCTAATGAATAAAATTT
CGTTTATTTCAAAAAAAA--------------------------------------------------------------
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>chr3A_1430
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-----TAAAAGTTCCTGGCACACATATTAGTTATCACAAATAAAAGTTCATGTCACTCATATTAGTTATCAGAAGGCATA
CATTACATGTTGATAGGCCAAAACATACCAAATCACATGATGTACATGTCACATTCAACAAGTAGAAAAAAGAGCATTAC
ATGGCCCCAAGTTTCATGCTTGACAGGTTATTGCTCAGTGACTCGACAGTTTCATCAGGTGAATCGTCATTTGCATGTAA
AACTGGTTCTGGTTCTTCAACATGCACAGGAGAAACCTTATCTTCCAATTCTGCTTCGAGGTTTCTGAATTCCTCTTCTA
TATCTTCTTCATCAGCCAATGAATCCAAAGGCGCTGATTCTGCATAACAATTGGATCAGAACATAAAAAAGACTACCTAC
ATATAAAGATCCATTGGCTTGTCACAAATTAAG--GAAAAATAAAGTTGCTTCCGTTGCCCAAAGGCCTATATATATATA
GTATGTAGGGCACAGAAATCTAAACCAAATACATTATGAGGCTAAACCCAGATAATAAAATA-------TATAAGTAACT
ATATGCATGATTTTACCATGGAAAATATTATTTTACAGCATAAACAAGATTAGGACAGTGATGTACACGCTGACTAGTAA
GTACAACTAAGAACATGATCATTTGCACAGAAATGAATACCAGTGAGAAATAATGCATATCCATTTTATCTCTAAAACTG
ACTGCACATGGAACTCAAATATGTGTCGTGTCAACGGATGATCAAACCAAAACACAAAATTA------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------TCTGAAACTAGGTTTCATAGCCATTCA
GACTGGTTGGGTTTGGTGCAAAATGAAGAGTCCAGTCAGTA---GGTTGGCCTGGCTAAAGTTACATTTGGGAACTTGGG
TTGGATCAGATTTGGACTGGGTTGGGCTTTGAATGTTC
>chr3B_1446
ACAAT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------------------TAGTTACCACAAATGAAAGTTCATGTCACTCATATTAGTTATCAGAAGGCATA
CATTACACGTTGATAGGCCAAAACATACCAAATCACATGATGTACATGTCACATTCAACAAGTAGAAAAAAGAGCATTAC
ATGGCCCCAAGTTTCATGCTTGACAGGTTATTGCTCAGCGACTCAACAGTTTCTTCAGGTGAATCGTCATTTGCATGTAA
AACTGGTTCTGGTTCTTCAACATGCACAGGAGAAACCTTATCCTCCAATTCTGCTTCGAGGTTTCTGAATTCCTCTTCTA
TATCTTCTTCATCAGCCAATGAATCCAAAGGTGCTGATTCTGCATAACAATTGGATCAGAACATAAAA--GACTACCTAC
ATATAAAGATCCATTGATTTGTCACAAATTAAGAAGAAGAAAAAAGTTGCTTCCGTTGCCCAAAGGCC--TATATATATA
GTATGTAGGGCACGGAAATCTAAACCAAATACATTATGAGGCCAAACCCAGATAATAAAATTATACTCGTATAAGT--CT
GTATGCATGGTTTTACCATGGAAAATAT---TTTACAGCGTAAACAAGATTAGGACAGTGCTGTACACGCTAACTAGTAA
GTACAACTAAGAACATGATCATTTGCACAAAAATGAATGCCTATGAGAAATAATGCATATCCATTTCATCTCT-AAACTG
ACTGCACATGGAACTCAAATATGTGTCGTATCAACGGATGATCAAACCAAAACACAAAATAATACTACCTCCGTCCTGGT
TTATTAGACCCCTTTGTAATTTATGCTAAAATTTGACCAAAGATTTAACTGACAAAATGTTAGTGTATGTCAACAAAAAT
TATATCGTTGGATTCGTATTTGAACATAATTTTCAATGAAATTCGTGACATGCATGAACATTTTGTTAGTTAAATTTATG
GTCAAAATTTGGCACATATTACAATGGGGACCAATAAACCAGGGCGGAGGTAGTATGAAACTAGGTTTCATACCCATTCA
GACGGGTTGGGTTTGGTGCAAAATGAAGAGTCCAGTCAGTATTGGGTTGGCCTGGCTAG-GTTAGATTTGGGAACTTGGG
TTGGATCAGATTTGGACTGGGTTGAGCTTTGAATGTTC
>SNPs
-------S---------------------------------------------S--------------------------
--S---------------------------------S-------------------------------------------
--------------------------------------------------------------------------------
----------------------SS--------------------------------------S-----------------
---------------------------S----------------------------------------------------
----------S------------------------------S---------S----------------------------
------------------------------------------------S----------------S--------------
----------------S----------------S-S---------------------------S--S-------------
-----------------------------------------S----------------S-----------------S---
-------------------------------------------------------S---S--------------------
-------------------------------------S-----------------------------------S------
--S----------------------------------S-SS--------------S-------S----------------
-----------------------------------------------------------------S--------------
------------------------S-------------------------------------------------------
--------------------------S-----------------------S---------------------S-------
-------------S--------------------S---------------------------------S-------S---
----------------------S-------------------------S-------------------------------
--------S------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS---------------------------------------------------------------S-S---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------S--------------------------------------------
------------------------S--------------------------------------------S----------
--------------------------------------------------------------------------------
------------------------S---------------------------------------------------S---
--------------------------------------------S--S--------------------------------
--------------------------------------------------------------------------------
------------------------------------------S-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---S----------------------------------
>forward_883
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------TGTCCTCCTATGGGCTT
TGC-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------
>reverse_1785
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------GCAAAGGCGCTGATTCTGC-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------
