Multiple sequence alignment - TraesCS3D01G140900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G140900 chr3D 100.000 3709 0 0 1 3709 103234672 103230964 0.000000e+00 6850.0
1 TraesCS3D01G140900 chr3D 82.196 337 14 17 2132 2452 546711281 546710975 7.950000e-62 248.0
2 TraesCS3D01G140900 chr3D 94.245 139 7 1 1663 1801 546783936 546783799 1.040000e-50 211.0
3 TraesCS3D01G140900 chr3D 85.714 140 8 2 1876 2003 546711520 546711381 1.800000e-28 137.0
4 TraesCS3D01G140900 chr3D 89.333 75 8 0 1 75 11794540 11794614 1.100000e-15 95.3
5 TraesCS3D01G140900 chr3B 91.077 2813 108 49 116 2837 153811404 153808644 0.000000e+00 3672.0
6 TraesCS3D01G140900 chr3B 91.298 724 38 8 2942 3651 153808642 153807930 0.000000e+00 965.0
7 TraesCS3D01G140900 chr3B 95.536 112 4 1 2831 2942 694169284 694169174 1.060000e-40 178.0
8 TraesCS3D01G140900 chr3B 95.455 110 5 0 2835 2944 8788848 8788739 3.810000e-40 176.0
9 TraesCS3D01G140900 chr3B 91.892 74 6 0 1 74 28000196 28000123 1.820000e-18 104.0
10 TraesCS3D01G140900 chr3B 84.932 73 11 0 1 73 340795522 340795450 1.430000e-09 75.0
11 TraesCS3D01G140900 chr3A 91.396 2313 113 32 542 2833 552802181 552804428 0.000000e+00 3090.0
12 TraesCS3D01G140900 chr3A 82.927 615 60 23 2954 3531 552804437 552805043 2.550000e-141 512.0
13 TraesCS3D01G140900 chr3A 87.156 327 19 10 222 525 552801807 552802133 2.120000e-92 350.0
14 TraesCS3D01G140900 chr3A 80.412 291 25 18 1876 2145 683452755 683452476 3.780000e-45 193.0
15 TraesCS3D01G140900 chr3A 95.918 49 2 0 1 49 15609234 15609186 3.070000e-11 80.5
16 TraesCS3D01G140900 chr4B 83.614 653 96 7 2065 2710 52968476 52969124 1.470000e-168 603.0
17 TraesCS3D01G140900 chr4B 88.187 364 42 1 1451 1813 52967814 52968177 2.050000e-117 433.0
18 TraesCS3D01G140900 chr4D 90.959 365 26 4 1451 1814 489235502 489235860 5.570000e-133 484.0
19 TraesCS3D01G140900 chr4D 82.004 489 85 1 2216 2701 489236487 489236975 2.670000e-111 412.0
20 TraesCS3D01G140900 chr4D 97.222 108 3 0 2836 2943 80853046 80852939 2.280000e-42 183.0
21 TraesCS3D01G140900 chr7A 77.838 370 71 11 1448 1811 547569475 547569839 6.240000e-53 219.0
22 TraesCS3D01G140900 chr7D 77.628 371 70 12 1448 1811 448340216 448339852 2.900000e-51 213.0
23 TraesCS3D01G140900 chr7B 77.628 371 70 12 1448 1811 465592801 465592437 2.900000e-51 213.0
24 TraesCS3D01G140900 chr7B 76.111 360 62 22 1466 1810 731101464 731101814 2.290000e-37 167.0
25 TraesCS3D01G140900 chr5B 78.188 298 61 4 2233 2528 5053982 5053687 1.760000e-43 187.0
26 TraesCS3D01G140900 chr5B 83.784 74 10 2 6 78 528675027 528674955 6.650000e-08 69.4
27 TraesCS3D01G140900 chr5B 88.235 51 6 0 3657 3707 696356020 696356070 1.110000e-05 62.1
28 TraesCS3D01G140900 chr6B 96.296 108 4 0 2835 2942 226866955 226867062 1.060000e-40 178.0
29 TraesCS3D01G140900 chr6B 94.690 113 6 0 2835 2947 14780004 14779892 3.810000e-40 176.0
30 TraesCS3D01G140900 chr6B 97.959 49 1 0 1 49 573158433 573158481 6.600000e-13 86.1
31 TraesCS3D01G140900 chr5D 77.592 299 61 6 2233 2528 3567041 3566746 3.810000e-40 176.0
32 TraesCS3D01G140900 chr2B 95.455 110 5 0 2833 2942 765483880 765483989 3.810000e-40 176.0
33 TraesCS3D01G140900 chr1D 94.690 113 6 0 2834 2946 464736338 464736226 3.810000e-40 176.0
34 TraesCS3D01G140900 chr5A 93.913 115 7 0 2836 2950 368169313 368169427 1.370000e-39 174.0
35 TraesCS3D01G140900 chr5A 77.385 283 60 4 2233 2513 2409766 2409486 8.240000e-37 165.0
36 TraesCS3D01G140900 chr5A 85.849 106 14 1 1 105 457906588 457906483 1.090000e-20 111.0
37 TraesCS3D01G140900 chr5A 83.000 100 15 1 1 100 657100461 657100364 5.100000e-14 89.8
38 TraesCS3D01G140900 chr4A 92.982 114 8 0 2836 2949 736237138 736237025 2.290000e-37 167.0
39 TraesCS3D01G140900 chr2D 87.838 74 9 0 2 75 301528762 301528835 1.840000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G140900 chr3D 103230964 103234672 3708 True 6850.000000 6850 100.000000 1 3709 1 chr3D.!!$R1 3708
1 TraesCS3D01G140900 chr3B 153807930 153811404 3474 True 2318.500000 3672 91.187500 116 3651 2 chr3B.!!$R5 3535
2 TraesCS3D01G140900 chr3A 552801807 552805043 3236 False 1317.333333 3090 87.159667 222 3531 3 chr3A.!!$F1 3309
3 TraesCS3D01G140900 chr4B 52967814 52969124 1310 False 518.000000 603 85.900500 1451 2710 2 chr4B.!!$F1 1259
4 TraesCS3D01G140900 chr4D 489235502 489236975 1473 False 448.000000 484 86.481500 1451 2701 2 chr4D.!!$F1 1250

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
63 64 0.035152 TTGAGCAATGCCCGATCACT 60.035 50.0 0.0 0.0 0.00 3.41 F
114 115 0.107268 TGTCATATGCGGCTGATGCT 59.893 50.0 0.0 0.0 39.59 3.79 F
120 121 0.178767 ATGCGGCTGATGCTCTAACA 59.821 50.0 0.0 0.0 39.59 2.41 F
519 544 0.470080 TCCTCCTCCACCATCGATCC 60.470 60.0 0.0 0.0 0.00 3.36 F
539 587 0.963355 ACTCTGACCTCTGCTCGACC 60.963 60.0 0.0 0.0 0.00 4.79 F
831 899 1.026718 GTCCACCGGCTGATTCCTTG 61.027 60.0 0.0 0.0 0.00 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1791 1897 0.333652 TACCGTCCTGGGACATGAGA 59.666 55.000 18.33 2.41 44.77 3.27 R
1857 2021 1.203928 GATGGAGATCGTGTCAAGCG 58.796 55.000 0.00 0.00 0.00 4.68 R
1873 2037 3.369147 GTCAGCGGATTCGATTATGGATG 59.631 47.826 0.00 0.00 39.00 3.51 R
2255 2722 1.860950 GCGTAGTACATGAGCATGGTG 59.139 52.381 14.35 0.00 42.91 4.17 R
2259 2726 2.168521 AGTTGGCGTAGTACATGAGCAT 59.831 45.455 0.00 0.00 0.00 3.79 R
2769 3242 1.095228 AAACGAGCACACCACACAGG 61.095 55.000 0.00 0.00 45.67 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 7.689446 TGAGAATCTAGTATAAGATGTCCGG 57.311 40.000 0.00 0.00 36.34 5.14
28 29 7.459234 TGAGAATCTAGTATAAGATGTCCGGA 58.541 38.462 0.00 0.00 36.34 5.14
29 30 8.110271 TGAGAATCTAGTATAAGATGTCCGGAT 58.890 37.037 7.81 0.00 36.34 4.18
30 31 8.287439 AGAATCTAGTATAAGATGTCCGGATG 57.713 38.462 7.81 0.00 36.34 3.51
31 32 5.899120 TCTAGTATAAGATGTCCGGATGC 57.101 43.478 7.81 0.00 0.00 3.91
32 33 5.321927 TCTAGTATAAGATGTCCGGATGCA 58.678 41.667 7.81 1.18 0.00 3.96
33 34 4.527509 AGTATAAGATGTCCGGATGCAG 57.472 45.455 7.81 0.00 0.00 4.41
34 35 3.898123 AGTATAAGATGTCCGGATGCAGT 59.102 43.478 7.81 0.00 0.00 4.40
35 36 3.845781 ATAAGATGTCCGGATGCAGTT 57.154 42.857 7.81 2.65 0.00 3.16
36 37 1.742761 AAGATGTCCGGATGCAGTTG 58.257 50.000 7.81 0.00 0.00 3.16
37 38 0.615331 AGATGTCCGGATGCAGTTGT 59.385 50.000 7.81 0.00 0.00 3.32
38 39 0.729116 GATGTCCGGATGCAGTTGTG 59.271 55.000 7.81 0.00 0.00 3.33
39 40 0.036732 ATGTCCGGATGCAGTTGTGT 59.963 50.000 7.81 0.00 0.00 3.72
40 41 0.179032 TGTCCGGATGCAGTTGTGTT 60.179 50.000 7.81 0.00 0.00 3.32
41 42 1.070914 TGTCCGGATGCAGTTGTGTTA 59.929 47.619 7.81 0.00 0.00 2.41
42 43 2.147958 GTCCGGATGCAGTTGTGTTAA 58.852 47.619 7.81 0.00 0.00 2.01
43 44 2.747446 GTCCGGATGCAGTTGTGTTAAT 59.253 45.455 7.81 0.00 0.00 1.40
44 45 3.190535 GTCCGGATGCAGTTGTGTTAATT 59.809 43.478 7.81 0.00 0.00 1.40
45 46 3.823873 TCCGGATGCAGTTGTGTTAATTT 59.176 39.130 0.00 0.00 0.00 1.82
46 47 3.919804 CCGGATGCAGTTGTGTTAATTTG 59.080 43.478 0.00 0.00 0.00 2.32
47 48 4.320861 CCGGATGCAGTTGTGTTAATTTGA 60.321 41.667 0.00 0.00 0.00 2.69
48 49 4.853196 CGGATGCAGTTGTGTTAATTTGAG 59.147 41.667 0.00 0.00 0.00 3.02
49 50 4.622740 GGATGCAGTTGTGTTAATTTGAGC 59.377 41.667 0.00 0.00 0.00 4.26
50 51 4.645762 TGCAGTTGTGTTAATTTGAGCA 57.354 36.364 0.00 0.00 0.00 4.26
51 52 5.003692 TGCAGTTGTGTTAATTTGAGCAA 57.996 34.783 0.00 0.00 0.00 3.91
52 53 5.599732 TGCAGTTGTGTTAATTTGAGCAAT 58.400 33.333 0.00 0.00 0.00 3.56
53 54 5.462729 TGCAGTTGTGTTAATTTGAGCAATG 59.537 36.000 0.00 0.00 0.00 2.82
54 55 5.613142 GCAGTTGTGTTAATTTGAGCAATGC 60.613 40.000 0.00 0.00 0.00 3.56
55 56 4.990426 AGTTGTGTTAATTTGAGCAATGCC 59.010 37.500 0.00 0.00 0.00 4.40
56 57 3.924144 TGTGTTAATTTGAGCAATGCCC 58.076 40.909 0.00 0.00 0.00 5.36
57 58 2.923020 GTGTTAATTTGAGCAATGCCCG 59.077 45.455 0.00 0.00 0.00 6.13
58 59 2.822561 TGTTAATTTGAGCAATGCCCGA 59.177 40.909 0.00 0.00 0.00 5.14
59 60 3.446873 TGTTAATTTGAGCAATGCCCGAT 59.553 39.130 0.00 0.00 0.00 4.18
60 61 2.877043 AATTTGAGCAATGCCCGATC 57.123 45.000 0.00 0.00 0.00 3.69
61 62 1.766494 ATTTGAGCAATGCCCGATCA 58.234 45.000 0.00 0.00 0.00 2.92
62 63 0.810648 TTTGAGCAATGCCCGATCAC 59.189 50.000 0.00 0.00 0.00 3.06
63 64 0.035152 TTGAGCAATGCCCGATCACT 60.035 50.000 0.00 0.00 0.00 3.41
64 65 0.829990 TGAGCAATGCCCGATCACTA 59.170 50.000 0.00 0.00 0.00 2.74
65 66 1.221414 GAGCAATGCCCGATCACTAC 58.779 55.000 0.00 0.00 0.00 2.73
66 67 0.179045 AGCAATGCCCGATCACTACC 60.179 55.000 0.00 0.00 0.00 3.18
67 68 1.166531 GCAATGCCCGATCACTACCC 61.167 60.000 0.00 0.00 0.00 3.69
68 69 0.880278 CAATGCCCGATCACTACCCG 60.880 60.000 0.00 0.00 0.00 5.28
69 70 2.660258 AATGCCCGATCACTACCCGC 62.660 60.000 0.00 0.00 0.00 6.13
70 71 4.944372 GCCCGATCACTACCCGCG 62.944 72.222 0.00 0.00 0.00 6.46
71 72 4.280494 CCCGATCACTACCCGCGG 62.280 72.222 21.04 21.04 41.53 6.46
72 73 3.214123 CCGATCACTACCCGCGGA 61.214 66.667 30.73 6.52 44.43 5.54
73 74 2.025727 CGATCACTACCCGCGGAC 59.974 66.667 30.73 6.13 0.00 4.79
74 75 2.025727 GATCACTACCCGCGGACG 59.974 66.667 30.73 14.21 39.67 4.79
84 85 3.788766 CGCGGACGGGCTTTTGAG 61.789 66.667 0.00 0.00 34.97 3.02
85 86 3.431725 GCGGACGGGCTTTTGAGG 61.432 66.667 0.00 0.00 0.00 3.86
86 87 2.746277 CGGACGGGCTTTTGAGGG 60.746 66.667 0.00 0.00 0.00 4.30
87 88 2.361230 GGACGGGCTTTTGAGGGG 60.361 66.667 0.00 0.00 0.00 4.79
88 89 2.361230 GACGGGCTTTTGAGGGGG 60.361 66.667 0.00 0.00 0.00 5.40
89 90 2.856988 ACGGGCTTTTGAGGGGGA 60.857 61.111 0.00 0.00 0.00 4.81
90 91 2.420466 GACGGGCTTTTGAGGGGGAA 62.420 60.000 0.00 0.00 0.00 3.97
91 92 1.000359 CGGGCTTTTGAGGGGGAAT 60.000 57.895 0.00 0.00 0.00 3.01
92 93 0.257616 CGGGCTTTTGAGGGGGAATA 59.742 55.000 0.00 0.00 0.00 1.75
93 94 1.133482 CGGGCTTTTGAGGGGGAATAT 60.133 52.381 0.00 0.00 0.00 1.28
94 95 2.689723 CGGGCTTTTGAGGGGGAATATT 60.690 50.000 0.00 0.00 0.00 1.28
95 96 3.384168 GGGCTTTTGAGGGGGAATATTT 58.616 45.455 0.00 0.00 0.00 1.40
96 97 3.134623 GGGCTTTTGAGGGGGAATATTTG 59.865 47.826 0.00 0.00 0.00 2.32
97 98 3.774766 GGCTTTTGAGGGGGAATATTTGT 59.225 43.478 0.00 0.00 0.00 2.83
98 99 4.141937 GGCTTTTGAGGGGGAATATTTGTC 60.142 45.833 0.00 0.00 0.00 3.18
99 100 4.466015 GCTTTTGAGGGGGAATATTTGTCA 59.534 41.667 0.00 0.00 0.00 3.58
100 101 5.129320 GCTTTTGAGGGGGAATATTTGTCAT 59.871 40.000 0.00 0.00 0.00 3.06
101 102 6.323739 GCTTTTGAGGGGGAATATTTGTCATA 59.676 38.462 0.00 0.00 0.00 2.15
102 103 7.015584 GCTTTTGAGGGGGAATATTTGTCATAT 59.984 37.037 0.00 0.00 0.00 1.78
103 104 7.838079 TTTGAGGGGGAATATTTGTCATATG 57.162 36.000 0.00 0.00 0.00 1.78
104 105 5.324409 TGAGGGGGAATATTTGTCATATGC 58.676 41.667 0.00 0.00 0.00 3.14
105 106 4.335416 AGGGGGAATATTTGTCATATGCG 58.665 43.478 0.00 0.00 0.00 4.73
106 107 3.443681 GGGGGAATATTTGTCATATGCGG 59.556 47.826 0.00 0.00 0.00 5.69
107 108 3.119495 GGGGAATATTTGTCATATGCGGC 60.119 47.826 0.00 0.00 0.00 6.53
108 109 3.758554 GGGAATATTTGTCATATGCGGCT 59.241 43.478 0.00 0.00 0.00 5.52
109 110 4.379813 GGGAATATTTGTCATATGCGGCTG 60.380 45.833 0.00 0.00 0.00 4.85
110 111 4.455533 GGAATATTTGTCATATGCGGCTGA 59.544 41.667 0.00 0.00 0.00 4.26
111 112 5.124457 GGAATATTTGTCATATGCGGCTGAT 59.876 40.000 0.00 0.00 0.00 2.90
112 113 3.909776 ATTTGTCATATGCGGCTGATG 57.090 42.857 0.00 4.98 0.00 3.07
113 114 0.946528 TTGTCATATGCGGCTGATGC 59.053 50.000 0.00 2.63 38.76 3.91
114 115 0.107268 TGTCATATGCGGCTGATGCT 59.893 50.000 0.00 0.00 39.59 3.79
120 121 0.178767 ATGCGGCTGATGCTCTAACA 59.821 50.000 0.00 0.00 39.59 2.41
140 141 2.649331 TCGTACTGCTCCTAGTTTGC 57.351 50.000 0.00 0.00 32.19 3.68
143 144 1.555533 GTACTGCTCCTAGTTTGCCCT 59.444 52.381 0.00 0.00 32.19 5.19
147 148 1.134098 TGCTCCTAGTTTGCCCTATGC 60.134 52.381 0.00 0.00 41.77 3.14
168 169 2.313234 CGTCGCGTGAAAGAAGAACTA 58.687 47.619 5.77 0.00 0.00 2.24
173 174 5.003590 GTCGCGTGAAAGAAGAACTAGTATG 59.996 44.000 5.77 0.00 0.00 2.39
181 182 5.735733 AGAAGAACTAGTATGGAGAGGGA 57.264 43.478 0.00 0.00 0.00 4.20
185 186 6.547930 AGAACTAGTATGGAGAGGGAAAAC 57.452 41.667 0.00 0.00 0.00 2.43
187 188 7.420029 AGAACTAGTATGGAGAGGGAAAACTA 58.580 38.462 0.00 0.00 0.00 2.24
188 189 7.562088 AGAACTAGTATGGAGAGGGAAAACTAG 59.438 40.741 0.00 0.00 40.34 2.57
189 190 6.982899 ACTAGTATGGAGAGGGAAAACTAGA 58.017 40.000 12.22 0.00 37.98 2.43
190 191 7.064229 ACTAGTATGGAGAGGGAAAACTAGAG 58.936 42.308 12.22 0.00 37.98 2.43
202 203 1.088306 AACTAGAGAGAGTCCGTGCG 58.912 55.000 0.00 0.00 0.00 5.34
232 236 2.093764 CAGAAGCAACGAGAGGGAGAAT 60.094 50.000 0.00 0.00 0.00 2.40
250 254 2.128853 ATTTTGCGTGTGTGGAGCGG 62.129 55.000 0.00 0.00 0.00 5.52
342 357 2.743538 GGGGTAACGGCCGTGTTC 60.744 66.667 34.95 23.51 33.32 3.18
405 420 1.199097 CCGCCCGAATATGTTAATGCC 59.801 52.381 0.00 0.00 0.00 4.40
413 434 6.142817 CCGAATATGTTAATGCCTGTTTAGC 58.857 40.000 0.00 0.00 0.00 3.09
435 456 2.022195 TCTCCCGCGCACTATATATCC 58.978 52.381 8.75 0.00 0.00 2.59
466 487 3.574396 TCCTCATCTCCGGCTACAATTAG 59.426 47.826 0.00 0.00 0.00 1.73
519 544 0.470080 TCCTCCTCCACCATCGATCC 60.470 60.000 0.00 0.00 0.00 3.36
525 550 1.068281 CTCCACCATCGATCCACTCTG 59.932 57.143 0.00 0.00 0.00 3.35
526 551 1.114627 CCACCATCGATCCACTCTGA 58.885 55.000 0.00 0.00 0.00 3.27
539 587 0.963355 ACTCTGACCTCTGCTCGACC 60.963 60.000 0.00 0.00 0.00 4.79
567 623 4.664150 ATCGATCTTCCTCTTCTTGGTC 57.336 45.455 0.00 0.00 0.00 4.02
574 638 2.326428 TCCTCTTCTTGGTCGGTTTCT 58.674 47.619 0.00 0.00 0.00 2.52
606 670 2.081212 CGAAGGTGCTGTCGTCGTC 61.081 63.158 0.00 0.00 32.96 4.20
656 724 2.162408 GCTCCAACAACTGGTCAATAGC 59.838 50.000 0.00 0.00 46.51 2.97
664 732 2.481441 ACTGGTCAATAGCTGGGATCA 58.519 47.619 0.00 0.00 0.00 2.92
666 734 4.234550 ACTGGTCAATAGCTGGGATCATA 58.765 43.478 0.00 0.00 0.00 2.15
764 832 4.965283 TCAAAGGGATTGGGATTAACCT 57.035 40.909 0.00 0.00 39.62 3.50
765 833 6.411554 GGATCAAAGGGATTGGGATTAACCTA 60.412 42.308 0.00 0.00 39.62 3.08
766 834 6.410222 TCAAAGGGATTGGGATTAACCTAA 57.590 37.500 0.00 0.00 43.05 2.69
767 835 6.192044 TCAAAGGGATTGGGATTAACCTAAC 58.808 40.000 0.00 0.00 41.75 2.34
768 836 4.808767 AGGGATTGGGATTAACCTAACC 57.191 45.455 0.00 0.00 41.75 2.85
822 890 4.309950 GACGTTGGTCCACCGGCT 62.310 66.667 13.85 0.00 39.43 5.52
831 899 1.026718 GTCCACCGGCTGATTCCTTG 61.027 60.000 0.00 0.00 0.00 3.61
837 905 1.361668 CGGCTGATTCCTTGTGTCCG 61.362 60.000 0.00 0.00 0.00 4.79
840 908 1.608025 GCTGATTCCTTGTGTCCGTCA 60.608 52.381 0.00 0.00 0.00 4.35
862 931 7.135467 GTCACAACAAAGGATTTCTTCTTCTC 58.865 38.462 0.00 0.00 35.03 2.87
876 945 3.006112 TCTTCTCTGCACCTCGTATCT 57.994 47.619 0.00 0.00 0.00 1.98
877 946 4.152284 TCTTCTCTGCACCTCGTATCTA 57.848 45.455 0.00 0.00 0.00 1.98
1041 1114 2.670592 TCGTCCGCGAAGACCTCA 60.671 61.111 8.23 0.00 44.92 3.86
1791 1897 3.717924 CTCCGCCTCCGACTACCCT 62.718 68.421 0.00 0.00 36.29 4.34
1853 2017 4.563580 GCAAACCGTTTAAAATATTCCCGG 59.436 41.667 8.99 8.99 39.75 5.73
1857 2021 4.096833 ACCGTTTAAAATATTCCCGGCTTC 59.903 41.667 10.14 0.00 37.51 3.86
1873 2037 1.272781 CTTCGCTTGACACGATCTCC 58.727 55.000 0.00 0.00 39.65 3.71
1904 2080 2.674177 CGAATCCGCTGACTAACCAACT 60.674 50.000 0.00 0.00 0.00 3.16
2513 2980 4.087892 ATCGACGCCCAGCTGCTT 62.088 61.111 8.66 0.00 0.00 3.91
2818 3296 6.012658 ACGTTTGTACAAAATCATGCATCT 57.987 33.333 22.14 0.00 31.33 2.90
2819 3297 6.086222 ACGTTTGTACAAAATCATGCATCTC 58.914 36.000 22.14 5.05 31.33 2.75
2820 3298 6.085573 CGTTTGTACAAAATCATGCATCTCA 58.914 36.000 22.14 0.00 31.33 3.27
2837 3315 4.644103 TCTCAAGGGCGTACATAACTAC 57.356 45.455 0.00 0.00 0.00 2.73
2839 3317 4.337555 TCTCAAGGGCGTACATAACTACTC 59.662 45.833 0.00 0.00 0.00 2.59
2840 3318 3.382546 TCAAGGGCGTACATAACTACTCC 59.617 47.826 0.00 0.00 0.00 3.85
2841 3319 2.314246 AGGGCGTACATAACTACTCCC 58.686 52.381 0.00 0.00 40.67 4.30
2842 3320 2.091444 AGGGCGTACATAACTACTCCCT 60.091 50.000 1.70 1.70 44.19 4.20
2843 3321 2.295629 GGGCGTACATAACTACTCCCTC 59.704 54.545 0.00 0.00 38.28 4.30
2844 3322 3.220940 GGCGTACATAACTACTCCCTCT 58.779 50.000 0.00 0.00 0.00 3.69
2845 3323 3.004524 GGCGTACATAACTACTCCCTCTG 59.995 52.174 0.00 0.00 0.00 3.35
2846 3324 3.631227 GCGTACATAACTACTCCCTCTGT 59.369 47.826 0.00 0.00 0.00 3.41
2847 3325 4.097589 GCGTACATAACTACTCCCTCTGTT 59.902 45.833 0.00 0.00 0.00 3.16
2848 3326 5.732810 GCGTACATAACTACTCCCTCTGTTC 60.733 48.000 0.00 0.00 0.00 3.18
2849 3327 4.985538 ACATAACTACTCCCTCTGTTCG 57.014 45.455 0.00 0.00 0.00 3.95
2850 3328 3.700038 ACATAACTACTCCCTCTGTTCGG 59.300 47.826 0.00 0.00 0.00 4.30
2851 3329 2.599408 AACTACTCCCTCTGTTCGGA 57.401 50.000 0.00 0.00 0.00 4.55
2852 3330 2.599408 ACTACTCCCTCTGTTCGGAA 57.401 50.000 0.00 0.00 0.00 4.30
2853 3331 3.103080 ACTACTCCCTCTGTTCGGAAT 57.897 47.619 0.00 0.00 0.00 3.01
2854 3332 3.442076 ACTACTCCCTCTGTTCGGAATT 58.558 45.455 0.00 0.00 0.00 2.17
2855 3333 4.607239 ACTACTCCCTCTGTTCGGAATTA 58.393 43.478 0.00 0.00 0.00 1.40
2856 3334 3.889520 ACTCCCTCTGTTCGGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
2857 3335 3.442076 ACTCCCTCTGTTCGGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
2858 3336 3.838903 ACTCCCTCTGTTCGGAATTACTT 59.161 43.478 0.00 0.00 0.00 2.24
2859 3337 4.184629 CTCCCTCTGTTCGGAATTACTTG 58.815 47.826 0.00 0.00 0.00 3.16
2860 3338 3.581332 TCCCTCTGTTCGGAATTACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
2861 3339 3.933332 CCCTCTGTTCGGAATTACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
2862 3340 3.612860 CCTCTGTTCGGAATTACTTGTCG 59.387 47.826 0.00 0.00 0.00 4.35
2863 3341 2.991190 TCTGTTCGGAATTACTTGTCGC 59.009 45.455 0.00 0.00 0.00 5.19
2864 3342 1.722464 TGTTCGGAATTACTTGTCGCG 59.278 47.619 0.00 0.00 0.00 5.87
2865 3343 1.060122 GTTCGGAATTACTTGTCGCGG 59.940 52.381 6.13 0.00 0.00 6.46
2866 3344 0.527113 TCGGAATTACTTGTCGCGGA 59.473 50.000 6.13 0.00 0.00 5.54
2867 3345 1.067706 TCGGAATTACTTGTCGCGGAA 60.068 47.619 6.13 0.00 0.00 4.30
2868 3346 1.727880 CGGAATTACTTGTCGCGGAAA 59.272 47.619 6.13 0.00 0.00 3.13
2869 3347 2.350498 CGGAATTACTTGTCGCGGAAAT 59.650 45.455 6.13 0.00 0.00 2.17
2870 3348 3.680789 GGAATTACTTGTCGCGGAAATG 58.319 45.455 6.13 0.00 0.00 2.32
2871 3349 3.486875 GGAATTACTTGTCGCGGAAATGG 60.487 47.826 6.13 0.00 0.00 3.16
2872 3350 2.459060 TTACTTGTCGCGGAAATGGA 57.541 45.000 6.13 0.00 0.00 3.41
2873 3351 2.684001 TACTTGTCGCGGAAATGGAT 57.316 45.000 6.13 0.00 0.00 3.41
2874 3352 1.086696 ACTTGTCGCGGAAATGGATG 58.913 50.000 6.13 0.00 0.00 3.51
2875 3353 1.086696 CTTGTCGCGGAAATGGATGT 58.913 50.000 6.13 0.00 0.00 3.06
2876 3354 2.276201 CTTGTCGCGGAAATGGATGTA 58.724 47.619 6.13 0.00 0.00 2.29
2877 3355 2.613026 TGTCGCGGAAATGGATGTAT 57.387 45.000 6.13 0.00 0.00 2.29
2878 3356 2.479837 TGTCGCGGAAATGGATGTATC 58.520 47.619 6.13 0.00 0.00 2.24
2879 3357 2.102420 TGTCGCGGAAATGGATGTATCT 59.898 45.455 6.13 0.00 0.00 1.98
2880 3358 3.319689 TGTCGCGGAAATGGATGTATCTA 59.680 43.478 6.13 0.00 0.00 1.98
2881 3359 3.921021 GTCGCGGAAATGGATGTATCTAG 59.079 47.826 6.13 0.00 0.00 2.43
2882 3360 3.824443 TCGCGGAAATGGATGTATCTAGA 59.176 43.478 6.13 0.00 0.00 2.43
2883 3361 4.462834 TCGCGGAAATGGATGTATCTAGAT 59.537 41.667 10.73 10.73 0.00 1.98
2884 3362 4.564372 CGCGGAAATGGATGTATCTAGATG 59.436 45.833 15.79 0.00 0.00 2.90
2885 3363 5.482908 GCGGAAATGGATGTATCTAGATGT 58.517 41.667 15.79 1.25 0.00 3.06
2886 3364 6.625081 CGCGGAAATGGATGTATCTAGATGTA 60.625 42.308 15.79 4.44 0.00 2.29
2887 3365 7.268586 GCGGAAATGGATGTATCTAGATGTAT 58.731 38.462 15.79 9.11 0.00 2.29
2888 3366 7.766278 GCGGAAATGGATGTATCTAGATGTATT 59.234 37.037 15.79 4.32 0.00 1.89
2889 3367 9.658799 CGGAAATGGATGTATCTAGATGTATTT 57.341 33.333 15.79 11.36 0.00 1.40
2933 3411 8.770850 TTTTTAAGACAAGTAATTTCGAACGG 57.229 30.769 0.00 0.00 0.00 4.44
2934 3412 7.712264 TTTAAGACAAGTAATTTCGAACGGA 57.288 32.000 0.00 0.00 0.00 4.69
2935 3413 5.840940 AAGACAAGTAATTTCGAACGGAG 57.159 39.130 0.00 0.00 0.00 4.63
2936 3414 4.243270 AGACAAGTAATTTCGAACGGAGG 58.757 43.478 0.00 0.00 0.00 4.30
2937 3415 3.332034 ACAAGTAATTTCGAACGGAGGG 58.668 45.455 0.00 0.00 0.00 4.30
2938 3416 3.007182 ACAAGTAATTTCGAACGGAGGGA 59.993 43.478 0.00 0.00 0.00 4.20
2939 3417 3.521947 AGTAATTTCGAACGGAGGGAG 57.478 47.619 0.00 0.00 0.00 4.30
2940 3418 2.830321 AGTAATTTCGAACGGAGGGAGT 59.170 45.455 0.00 0.00 0.00 3.85
3052 3537 1.732259 GTTTGCTGGTGTATGGACTCG 59.268 52.381 0.00 0.00 0.00 4.18
3075 3569 5.106277 CGGGAGGAGGAAAATGTTTTAACTC 60.106 44.000 11.15 11.15 35.36 3.01
3093 3587 3.828921 ACTCATCCATCAACCATCCATG 58.171 45.455 0.00 0.00 0.00 3.66
3122 3616 3.439476 GCTCATGCTGTTCTTCTTGTCAT 59.561 43.478 0.00 0.00 36.03 3.06
3123 3617 4.633126 GCTCATGCTGTTCTTCTTGTCATA 59.367 41.667 0.00 0.00 36.03 2.15
3129 3628 7.692460 TGCTGTTCTTCTTGTCATATTTCAT 57.308 32.000 0.00 0.00 0.00 2.57
3175 3678 3.636300 TGGTCATGGGAGTTTCTTGTTTG 59.364 43.478 0.00 0.00 0.00 2.93
3196 3699 0.329596 GTTCCTGCTGGGTCCAGATT 59.670 55.000 20.22 0.00 46.30 2.40
3198 3701 1.204146 TCCTGCTGGGTCCAGATTAC 58.796 55.000 20.22 3.60 46.30 1.89
3232 3735 5.365021 ACTTCTCCAGGAATCAATCGAAT 57.635 39.130 0.00 0.00 33.01 3.34
3297 3807 2.376808 AGAAACTGATGCCAGAGTCG 57.623 50.000 0.00 0.00 43.02 4.18
3396 3908 1.673920 GCTGTCGGAGAAGAGAGGTAG 59.326 57.143 0.00 0.00 39.69 3.18
3422 3934 0.533755 GGAGGAGGATGTTGGCGATG 60.534 60.000 0.00 0.00 0.00 3.84
3425 3937 0.107214 GGAGGATGTTGGCGATGGAA 60.107 55.000 0.00 0.00 0.00 3.53
3446 3958 0.842635 ATCTGCATCACCTCTTCCCC 59.157 55.000 0.00 0.00 0.00 4.81
3447 3959 1.153289 CTGCATCACCTCTTCCCCG 60.153 63.158 0.00 0.00 0.00 5.73
3512 4039 6.051717 CACATCTTACCATTAGGAGACAAGG 58.948 44.000 0.00 0.00 38.69 3.61
3572 4099 2.884087 AAGATACGCCGACACGCCTG 62.884 60.000 0.00 0.00 36.19 4.85
3575 4102 2.495366 ATACGCCGACACGCCTGAAA 62.495 55.000 0.00 0.00 36.19 2.69
3576 4103 4.072088 CGCCGACACGCCTGAAAC 62.072 66.667 0.00 0.00 0.00 2.78
3577 4104 4.072088 GCCGACACGCCTGAAACG 62.072 66.667 0.00 0.00 0.00 3.60
3623 4150 3.326747 CCCTCGAGATTTTGACGTTTCT 58.673 45.455 15.71 0.00 0.00 2.52
3640 4167 1.951209 TCTAGTGGGATGTGCCTCAA 58.049 50.000 0.00 0.00 36.66 3.02
3647 4174 1.386533 GGATGTGCCTCAAGTCATGG 58.613 55.000 0.00 0.00 0.00 3.66
3651 4178 0.682209 GTGCCTCAAGTCATGGCCAT 60.682 55.000 14.09 14.09 45.56 4.40
3652 4179 0.394762 TGCCTCAAGTCATGGCCATC 60.395 55.000 17.61 5.66 45.56 3.51
3653 4180 0.394762 GCCTCAAGTCATGGCCATCA 60.395 55.000 17.61 0.00 40.71 3.07
3654 4181 1.676746 CCTCAAGTCATGGCCATCAG 58.323 55.000 17.61 5.90 0.00 2.90
3655 4182 1.022735 CTCAAGTCATGGCCATCAGC 58.977 55.000 17.61 8.96 42.60 4.26
3656 4183 0.622136 TCAAGTCATGGCCATCAGCT 59.378 50.000 17.61 11.29 43.05 4.24
3657 4184 1.839354 TCAAGTCATGGCCATCAGCTA 59.161 47.619 17.61 0.00 43.05 3.32
3658 4185 2.158856 TCAAGTCATGGCCATCAGCTAG 60.159 50.000 17.61 3.30 43.05 3.42
3659 4186 1.798626 AGTCATGGCCATCAGCTAGA 58.201 50.000 17.61 6.13 43.05 2.43
3660 4187 1.693062 AGTCATGGCCATCAGCTAGAG 59.307 52.381 17.61 1.59 43.05 2.43
3661 4188 0.395686 TCATGGCCATCAGCTAGAGC 59.604 55.000 17.61 0.00 43.05 4.09
3662 4189 0.108019 CATGGCCATCAGCTAGAGCA 59.892 55.000 17.61 0.00 45.16 4.26
3663 4190 1.065647 ATGGCCATCAGCTAGAGCAT 58.934 50.000 14.09 0.00 45.16 3.79
3664 4191 0.395686 TGGCCATCAGCTAGAGCATC 59.604 55.000 0.00 0.00 45.16 3.91
3665 4192 0.686224 GGCCATCAGCTAGAGCATCT 59.314 55.000 0.00 0.00 44.43 2.90
3666 4193 1.338011 GGCCATCAGCTAGAGCATCTC 60.338 57.143 0.00 0.00 42.10 2.75
3667 4194 3.671437 GGCCATCAGCTAGAGCATCTCT 61.671 54.545 0.00 1.71 42.10 3.10
3668 4195 4.379129 GGCCATCAGCTAGAGCATCTCTA 61.379 52.174 0.00 3.82 42.10 2.43
3678 4205 3.096489 GAGCATCTCTAGCAGACCTTG 57.904 52.381 0.00 0.00 32.26 3.61
3679 4206 2.430332 GAGCATCTCTAGCAGACCTTGT 59.570 50.000 0.00 0.00 32.26 3.16
3680 4207 3.634448 GAGCATCTCTAGCAGACCTTGTA 59.366 47.826 0.00 0.00 32.26 2.41
3681 4208 4.222336 AGCATCTCTAGCAGACCTTGTAT 58.778 43.478 0.00 0.00 32.26 2.29
3682 4209 5.389520 AGCATCTCTAGCAGACCTTGTATA 58.610 41.667 0.00 0.00 32.26 1.47
3683 4210 6.015918 AGCATCTCTAGCAGACCTTGTATAT 58.984 40.000 0.00 0.00 32.26 0.86
3684 4211 6.496565 AGCATCTCTAGCAGACCTTGTATATT 59.503 38.462 0.00 0.00 32.26 1.28
3685 4212 6.589523 GCATCTCTAGCAGACCTTGTATATTG 59.410 42.308 0.00 0.00 32.26 1.90
3686 4213 6.090483 TCTCTAGCAGACCTTGTATATTGC 57.910 41.667 0.00 0.00 0.00 3.56
3687 4214 5.011125 TCTCTAGCAGACCTTGTATATTGCC 59.989 44.000 0.00 0.00 32.21 4.52
3688 4215 2.838736 AGCAGACCTTGTATATTGCCG 58.161 47.619 0.00 0.00 32.21 5.69
3689 4216 2.434336 AGCAGACCTTGTATATTGCCGA 59.566 45.455 0.00 0.00 32.21 5.54
3690 4217 3.071602 AGCAGACCTTGTATATTGCCGAT 59.928 43.478 0.00 0.00 32.21 4.18
3691 4218 3.433615 GCAGACCTTGTATATTGCCGATC 59.566 47.826 0.00 0.00 0.00 3.69
3692 4219 4.631131 CAGACCTTGTATATTGCCGATCA 58.369 43.478 0.00 0.00 0.00 2.92
3693 4220 4.687948 CAGACCTTGTATATTGCCGATCAG 59.312 45.833 0.00 0.00 0.00 2.90
3694 4221 3.403038 ACCTTGTATATTGCCGATCAGC 58.597 45.455 0.00 0.00 0.00 4.26
3695 4222 3.181455 ACCTTGTATATTGCCGATCAGCA 60.181 43.478 0.00 0.00 42.17 4.41
3702 4229 2.161831 TGCCGATCAGCAAAACTCG 58.838 52.632 0.00 0.00 40.56 4.18
3703 4230 0.602638 TGCCGATCAGCAAAACTCGT 60.603 50.000 0.00 0.00 40.56 4.18
3704 4231 0.517316 GCCGATCAGCAAAACTCGTT 59.483 50.000 0.00 0.00 0.00 3.85
3705 4232 1.069227 GCCGATCAGCAAAACTCGTTT 60.069 47.619 0.00 0.00 0.00 3.60
3706 4233 2.158841 GCCGATCAGCAAAACTCGTTTA 59.841 45.455 0.00 0.00 31.63 2.01
3707 4234 3.732943 CCGATCAGCAAAACTCGTTTAC 58.267 45.455 0.00 0.00 31.63 2.01
3708 4235 3.185594 CCGATCAGCAAAACTCGTTTACA 59.814 43.478 0.00 0.00 31.63 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.577296 CCGGACATCTTATACTAGATTCTCAAA 58.423 37.037 0.00 0.00 32.60 2.69
2 3 7.942894 TCCGGACATCTTATACTAGATTCTCAA 59.057 37.037 0.00 0.00 32.60 3.02
3 4 7.459234 TCCGGACATCTTATACTAGATTCTCA 58.541 38.462 0.00 0.00 32.60 3.27
5 6 7.147983 GCATCCGGACATCTTATACTAGATTCT 60.148 40.741 6.12 0.00 32.60 2.40
6 7 6.975772 GCATCCGGACATCTTATACTAGATTC 59.024 42.308 6.12 0.00 32.60 2.52
7 8 6.437477 TGCATCCGGACATCTTATACTAGATT 59.563 38.462 6.12 0.00 32.60 2.40
8 9 5.952347 TGCATCCGGACATCTTATACTAGAT 59.048 40.000 6.12 0.00 35.26 1.98
9 10 5.321927 TGCATCCGGACATCTTATACTAGA 58.678 41.667 6.12 0.00 0.00 2.43
10 11 5.184096 ACTGCATCCGGACATCTTATACTAG 59.816 44.000 6.12 0.00 0.00 2.57
11 12 5.077564 ACTGCATCCGGACATCTTATACTA 58.922 41.667 6.12 0.00 0.00 1.82
12 13 3.898123 ACTGCATCCGGACATCTTATACT 59.102 43.478 6.12 0.00 0.00 2.12
13 14 4.258702 ACTGCATCCGGACATCTTATAC 57.741 45.455 6.12 0.00 0.00 1.47
14 15 4.100963 ACAACTGCATCCGGACATCTTATA 59.899 41.667 6.12 0.00 0.00 0.98
15 16 3.118261 ACAACTGCATCCGGACATCTTAT 60.118 43.478 6.12 0.00 0.00 1.73
16 17 2.236146 ACAACTGCATCCGGACATCTTA 59.764 45.455 6.12 0.00 0.00 2.10
17 18 1.003580 ACAACTGCATCCGGACATCTT 59.996 47.619 6.12 0.00 0.00 2.40
18 19 0.615331 ACAACTGCATCCGGACATCT 59.385 50.000 6.12 0.00 0.00 2.90
19 20 0.729116 CACAACTGCATCCGGACATC 59.271 55.000 6.12 0.00 0.00 3.06
20 21 0.036732 ACACAACTGCATCCGGACAT 59.963 50.000 6.12 0.00 0.00 3.06
21 22 0.179032 AACACAACTGCATCCGGACA 60.179 50.000 6.12 0.00 0.00 4.02
22 23 1.803334 TAACACAACTGCATCCGGAC 58.197 50.000 6.12 0.00 0.00 4.79
23 24 2.552599 TTAACACAACTGCATCCGGA 57.447 45.000 6.61 6.61 0.00 5.14
24 25 3.848272 AATTAACACAACTGCATCCGG 57.152 42.857 0.00 0.00 0.00 5.14
25 26 4.793071 TCAAATTAACACAACTGCATCCG 58.207 39.130 0.00 0.00 0.00 4.18
26 27 4.622740 GCTCAAATTAACACAACTGCATCC 59.377 41.667 0.00 0.00 0.00 3.51
27 28 5.221880 TGCTCAAATTAACACAACTGCATC 58.778 37.500 0.00 0.00 0.00 3.91
28 29 5.199024 TGCTCAAATTAACACAACTGCAT 57.801 34.783 0.00 0.00 0.00 3.96
29 30 4.645762 TGCTCAAATTAACACAACTGCA 57.354 36.364 0.00 0.00 0.00 4.41
30 31 5.613142 GCATTGCTCAAATTAACACAACTGC 60.613 40.000 0.16 0.00 0.00 4.40
31 32 5.107375 GGCATTGCTCAAATTAACACAACTG 60.107 40.000 8.82 0.00 0.00 3.16
32 33 4.990426 GGCATTGCTCAAATTAACACAACT 59.010 37.500 8.82 0.00 0.00 3.16
33 34 4.152223 GGGCATTGCTCAAATTAACACAAC 59.848 41.667 8.82 0.00 0.00 3.32
34 35 4.314121 GGGCATTGCTCAAATTAACACAA 58.686 39.130 8.82 0.00 0.00 3.33
35 36 3.613671 CGGGCATTGCTCAAATTAACACA 60.614 43.478 9.60 0.00 0.00 3.72
36 37 2.923020 CGGGCATTGCTCAAATTAACAC 59.077 45.455 9.60 0.00 0.00 3.32
37 38 2.822561 TCGGGCATTGCTCAAATTAACA 59.177 40.909 9.60 0.00 0.00 2.41
38 39 3.502191 TCGGGCATTGCTCAAATTAAC 57.498 42.857 9.60 0.00 0.00 2.01
39 40 3.698539 TGATCGGGCATTGCTCAAATTAA 59.301 39.130 9.60 0.00 0.00 1.40
40 41 3.066621 GTGATCGGGCATTGCTCAAATTA 59.933 43.478 9.60 0.00 0.00 1.40
41 42 2.101783 TGATCGGGCATTGCTCAAATT 58.898 42.857 9.60 0.00 0.00 1.82
42 43 1.406539 GTGATCGGGCATTGCTCAAAT 59.593 47.619 9.60 0.99 0.00 2.32
43 44 0.810648 GTGATCGGGCATTGCTCAAA 59.189 50.000 9.60 0.00 0.00 2.69
44 45 0.035152 AGTGATCGGGCATTGCTCAA 60.035 50.000 9.60 0.00 0.00 3.02
45 46 0.829990 TAGTGATCGGGCATTGCTCA 59.170 50.000 9.60 1.67 0.00 4.26
46 47 1.221414 GTAGTGATCGGGCATTGCTC 58.779 55.000 8.82 2.91 0.00 4.26
47 48 0.179045 GGTAGTGATCGGGCATTGCT 60.179 55.000 8.82 0.00 0.00 3.91
48 49 1.166531 GGGTAGTGATCGGGCATTGC 61.167 60.000 0.00 0.00 0.00 3.56
49 50 0.880278 CGGGTAGTGATCGGGCATTG 60.880 60.000 0.00 0.00 0.00 2.82
50 51 1.445942 CGGGTAGTGATCGGGCATT 59.554 57.895 0.00 0.00 0.00 3.56
51 52 3.138625 CGGGTAGTGATCGGGCAT 58.861 61.111 0.00 0.00 0.00 4.40
52 53 3.845259 GCGGGTAGTGATCGGGCA 61.845 66.667 0.00 0.00 0.00 5.36
53 54 4.944372 CGCGGGTAGTGATCGGGC 62.944 72.222 0.00 0.00 0.00 6.13
54 55 4.280494 CCGCGGGTAGTGATCGGG 62.280 72.222 20.10 0.00 36.73 5.14
55 56 3.214123 TCCGCGGGTAGTGATCGG 61.214 66.667 27.83 0.00 41.30 4.18
56 57 2.025727 GTCCGCGGGTAGTGATCG 59.974 66.667 27.83 0.00 0.00 3.69
57 58 2.025727 CGTCCGCGGGTAGTGATC 59.974 66.667 27.83 5.02 0.00 2.92
67 68 3.788766 CTCAAAAGCCCGTCCGCG 61.789 66.667 0.00 0.00 37.95 6.46
68 69 3.431725 CCTCAAAAGCCCGTCCGC 61.432 66.667 0.00 0.00 0.00 5.54
69 70 2.746277 CCCTCAAAAGCCCGTCCG 60.746 66.667 0.00 0.00 0.00 4.79
70 71 2.361230 CCCCTCAAAAGCCCGTCC 60.361 66.667 0.00 0.00 0.00 4.79
71 72 2.361230 CCCCCTCAAAAGCCCGTC 60.361 66.667 0.00 0.00 0.00 4.79
72 73 1.800229 ATTCCCCCTCAAAAGCCCGT 61.800 55.000 0.00 0.00 0.00 5.28
73 74 0.257616 TATTCCCCCTCAAAAGCCCG 59.742 55.000 0.00 0.00 0.00 6.13
74 75 2.775490 ATATTCCCCCTCAAAAGCCC 57.225 50.000 0.00 0.00 0.00 5.19
75 76 3.774766 ACAAATATTCCCCCTCAAAAGCC 59.225 43.478 0.00 0.00 0.00 4.35
76 77 4.466015 TGACAAATATTCCCCCTCAAAAGC 59.534 41.667 0.00 0.00 0.00 3.51
77 78 6.796785 ATGACAAATATTCCCCCTCAAAAG 57.203 37.500 0.00 0.00 0.00 2.27
78 79 7.201992 GCATATGACAAATATTCCCCCTCAAAA 60.202 37.037 6.97 0.00 0.00 2.44
79 80 6.267471 GCATATGACAAATATTCCCCCTCAAA 59.733 38.462 6.97 0.00 0.00 2.69
80 81 5.774690 GCATATGACAAATATTCCCCCTCAA 59.225 40.000 6.97 0.00 0.00 3.02
81 82 5.324409 GCATATGACAAATATTCCCCCTCA 58.676 41.667 6.97 0.00 0.00 3.86
82 83 4.396166 CGCATATGACAAATATTCCCCCTC 59.604 45.833 6.97 0.00 0.00 4.30
83 84 4.335416 CGCATATGACAAATATTCCCCCT 58.665 43.478 6.97 0.00 0.00 4.79
84 85 3.443681 CCGCATATGACAAATATTCCCCC 59.556 47.826 6.97 0.00 0.00 5.40
85 86 3.119495 GCCGCATATGACAAATATTCCCC 60.119 47.826 6.97 0.00 0.00 4.81
86 87 3.758554 AGCCGCATATGACAAATATTCCC 59.241 43.478 6.97 0.00 0.00 3.97
87 88 4.455533 TCAGCCGCATATGACAAATATTCC 59.544 41.667 6.97 0.00 0.00 3.01
88 89 5.611796 TCAGCCGCATATGACAAATATTC 57.388 39.130 6.97 0.00 0.00 1.75
89 90 5.620654 GCATCAGCCGCATATGACAAATATT 60.621 40.000 6.97 0.00 33.58 1.28
90 91 4.142534 GCATCAGCCGCATATGACAAATAT 60.143 41.667 6.97 0.00 33.58 1.28
91 92 3.189080 GCATCAGCCGCATATGACAAATA 59.811 43.478 6.97 0.00 33.58 1.40
92 93 2.030540 GCATCAGCCGCATATGACAAAT 60.031 45.455 6.97 0.00 33.58 2.32
93 94 1.334556 GCATCAGCCGCATATGACAAA 59.665 47.619 6.97 0.00 33.58 2.83
94 95 0.946528 GCATCAGCCGCATATGACAA 59.053 50.000 6.97 0.00 33.58 3.18
95 96 0.107268 AGCATCAGCCGCATATGACA 59.893 50.000 6.97 0.00 43.56 3.58
96 97 0.795085 GAGCATCAGCCGCATATGAC 59.205 55.000 6.97 0.00 43.56 3.06
97 98 0.683412 AGAGCATCAGCCGCATATGA 59.317 50.000 6.97 0.00 43.56 2.15
98 99 2.375173 TAGAGCATCAGCCGCATATG 57.625 50.000 0.00 0.00 43.56 1.78
99 100 2.037641 TGTTAGAGCATCAGCCGCATAT 59.962 45.455 0.00 0.00 43.56 1.78
100 101 1.412343 TGTTAGAGCATCAGCCGCATA 59.588 47.619 0.00 0.00 43.56 3.14
101 102 0.178767 TGTTAGAGCATCAGCCGCAT 59.821 50.000 0.00 0.00 43.56 4.73
102 103 0.178767 ATGTTAGAGCATCAGCCGCA 59.821 50.000 0.00 0.00 43.56 5.69
103 104 0.864455 GATGTTAGAGCATCAGCCGC 59.136 55.000 1.87 0.00 43.38 6.53
104 105 1.135046 CGATGTTAGAGCATCAGCCG 58.865 55.000 7.08 0.00 43.92 5.52
105 106 2.231215 ACGATGTTAGAGCATCAGCC 57.769 50.000 7.08 0.00 43.92 4.85
106 107 3.733224 CAGTACGATGTTAGAGCATCAGC 59.267 47.826 7.08 0.00 43.92 4.26
107 108 3.733224 GCAGTACGATGTTAGAGCATCAG 59.267 47.826 7.08 3.02 43.92 2.90
108 109 3.381590 AGCAGTACGATGTTAGAGCATCA 59.618 43.478 7.08 0.00 43.92 3.07
109 110 3.971150 AGCAGTACGATGTTAGAGCATC 58.029 45.455 0.00 0.00 41.21 3.91
110 111 3.243569 GGAGCAGTACGATGTTAGAGCAT 60.244 47.826 0.00 0.00 0.00 3.79
111 112 2.099263 GGAGCAGTACGATGTTAGAGCA 59.901 50.000 0.00 0.00 0.00 4.26
112 113 2.359531 AGGAGCAGTACGATGTTAGAGC 59.640 50.000 0.00 0.00 0.00 4.09
113 114 4.817464 ACTAGGAGCAGTACGATGTTAGAG 59.183 45.833 0.00 0.00 0.00 2.43
114 115 4.778579 ACTAGGAGCAGTACGATGTTAGA 58.221 43.478 0.00 0.00 0.00 2.10
120 121 2.159085 GGCAAACTAGGAGCAGTACGAT 60.159 50.000 0.00 0.00 0.00 3.73
140 141 3.709880 TTCACGCGACGGCATAGGG 62.710 63.158 15.93 0.00 39.92 3.53
143 144 0.388778 TTCTTTCACGCGACGGCATA 60.389 50.000 15.93 0.00 39.92 3.14
147 148 0.161024 GTTCTTCTTTCACGCGACGG 59.839 55.000 15.93 1.17 0.00 4.79
168 169 6.068735 TCTCTCTAGTTTTCCCTCTCCATACT 60.069 42.308 0.00 0.00 0.00 2.12
173 174 4.606210 ACTCTCTCTAGTTTTCCCTCTCC 58.394 47.826 0.00 0.00 0.00 3.71
181 182 2.095161 CGCACGGACTCTCTCTAGTTTT 60.095 50.000 0.00 0.00 0.00 2.43
185 186 0.375454 CACGCACGGACTCTCTCTAG 59.625 60.000 0.00 0.00 0.00 2.43
187 188 0.678366 ATCACGCACGGACTCTCTCT 60.678 55.000 0.00 0.00 0.00 3.10
188 189 0.524392 CATCACGCACGGACTCTCTC 60.524 60.000 0.00 0.00 0.00 3.20
189 190 1.508545 CATCACGCACGGACTCTCT 59.491 57.895 0.00 0.00 0.00 3.10
190 191 2.161486 GCATCACGCACGGACTCTC 61.161 63.158 0.00 0.00 41.79 3.20
202 203 0.179240 CGTTGCTTCTGTCGCATCAC 60.179 55.000 0.00 0.00 37.22 3.06
232 236 2.712539 CGCTCCACACACGCAAAA 59.287 55.556 0.00 0.00 0.00 2.44
405 420 1.519455 CGCGGGAGAGGCTAAACAG 60.519 63.158 0.00 0.00 0.00 3.16
413 434 1.460504 TATATAGTGCGCGGGAGAGG 58.539 55.000 8.83 0.00 0.00 3.69
466 487 2.810403 CGGGGGAGCGGTTACTAC 59.190 66.667 0.00 0.00 0.00 2.73
519 544 0.170116 GTCGAGCAGAGGTCAGAGTG 59.830 60.000 0.00 0.00 0.00 3.51
525 550 0.383949 GATCTGGTCGAGCAGAGGTC 59.616 60.000 40.04 32.15 0.00 3.85
526 551 0.323816 TGATCTGGTCGAGCAGAGGT 60.324 55.000 40.04 29.87 32.10 3.85
558 614 3.437049 GGATGAAGAAACCGACCAAGAAG 59.563 47.826 0.00 0.00 0.00 2.85
567 623 2.996621 GTCACAGAGGATGAAGAAACCG 59.003 50.000 0.00 0.00 0.00 4.44
574 638 2.029020 CACCTTCGTCACAGAGGATGAA 60.029 50.000 0.51 0.00 39.75 2.57
610 674 7.162898 CACTCGATCGATCAATAAATCAATCG 58.837 38.462 24.40 7.96 41.65 3.34
618 682 3.317993 TGGAGCACTCGATCGATCAATAA 59.682 43.478 24.40 6.44 0.00 1.40
619 683 2.884639 TGGAGCACTCGATCGATCAATA 59.115 45.455 24.40 8.81 0.00 1.90
656 724 1.000283 GCAGACGACCTATGATCCCAG 60.000 57.143 0.00 0.00 0.00 4.45
664 732 1.134965 GCAACTGAGCAGACGACCTAT 60.135 52.381 4.21 0.00 0.00 2.57
666 734 1.005630 GCAACTGAGCAGACGACCT 60.006 57.895 4.21 0.00 0.00 3.85
764 832 2.423538 GTCGCGAGGTTAGGTTAGGTTA 59.576 50.000 10.24 0.00 0.00 2.85
765 833 1.203287 GTCGCGAGGTTAGGTTAGGTT 59.797 52.381 10.24 0.00 0.00 3.50
766 834 0.813821 GTCGCGAGGTTAGGTTAGGT 59.186 55.000 10.24 0.00 0.00 3.08
767 835 0.101939 GGTCGCGAGGTTAGGTTAGG 59.898 60.000 10.24 0.00 0.00 2.69
768 836 0.813184 TGGTCGCGAGGTTAGGTTAG 59.187 55.000 10.24 0.00 0.00 2.34
831 899 9.981487 GAAGAAATCCTTTGTTGTGACGGACAC 62.981 44.444 3.63 3.63 41.41 3.67
837 905 7.012799 AGAGAAGAAGAAATCCTTTGTTGTGAC 59.987 37.037 0.00 0.00 34.68 3.67
840 908 6.238869 GCAGAGAAGAAGAAATCCTTTGTTGT 60.239 38.462 0.00 0.00 34.68 3.32
842 910 5.829924 TGCAGAGAAGAAGAAATCCTTTGTT 59.170 36.000 0.00 0.00 34.68 2.83
862 931 4.072839 TGTAGGATAGATACGAGGTGCAG 58.927 47.826 0.00 0.00 0.00 4.41
876 945 1.538512 GTGGACGCGCTATGTAGGATA 59.461 52.381 5.73 0.00 0.00 2.59
877 946 0.314302 GTGGACGCGCTATGTAGGAT 59.686 55.000 5.73 0.00 0.00 3.24
1080 1156 1.530013 GAGACTTGGTCGACGGGGAA 61.530 60.000 9.92 0.00 37.67 3.97
1127 1203 2.409651 CGGAGTAGTGCTCGCCTC 59.590 66.667 1.88 0.00 45.03 4.70
1128 1204 3.827898 GCGGAGTAGTGCTCGCCT 61.828 66.667 11.81 0.00 45.03 5.52
1130 1206 4.477975 ACGCGGAGTAGTGCTCGC 62.478 66.667 12.47 12.51 45.03 5.03
1131 1207 2.277373 GACGCGGAGTAGTGCTCG 60.277 66.667 12.47 0.00 45.03 5.03
1132 1208 2.277373 CGACGCGGAGTAGTGCTC 60.277 66.667 12.47 0.00 43.39 4.26
1791 1897 0.333652 TACCGTCCTGGGACATGAGA 59.666 55.000 18.33 2.41 44.77 3.27
1857 2021 1.203928 GATGGAGATCGTGTCAAGCG 58.796 55.000 0.00 0.00 0.00 4.68
1873 2037 3.369147 GTCAGCGGATTCGATTATGGATG 59.631 47.826 0.00 0.00 39.00 3.51
2255 2722 1.860950 GCGTAGTACATGAGCATGGTG 59.139 52.381 14.35 0.00 42.91 4.17
2258 2725 2.223537 TGGCGTAGTACATGAGCATG 57.776 50.000 8.82 8.82 44.15 4.06
2259 2726 2.168521 AGTTGGCGTAGTACATGAGCAT 59.831 45.455 0.00 0.00 0.00 3.79
2722 3195 1.805945 GCACGACCGACCATGTCTC 60.806 63.158 0.00 0.00 0.00 3.36
2723 3196 2.261671 GCACGACCGACCATGTCT 59.738 61.111 0.00 0.00 0.00 3.41
2769 3242 1.095228 AAACGAGCACACCACACAGG 61.095 55.000 0.00 0.00 45.67 4.00
2818 3296 3.382546 GGAGTAGTTATGTACGCCCTTGA 59.617 47.826 0.00 0.00 37.00 3.02
2819 3297 3.714391 GGAGTAGTTATGTACGCCCTTG 58.286 50.000 0.00 0.00 37.00 3.61
2837 3315 4.184629 CAAGTAATTCCGAACAGAGGGAG 58.815 47.826 0.00 0.00 33.01 4.30
2839 3317 3.933332 GACAAGTAATTCCGAACAGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
2840 3318 3.612860 CGACAAGTAATTCCGAACAGAGG 59.387 47.826 0.00 0.00 0.00 3.69
2841 3319 3.060895 GCGACAAGTAATTCCGAACAGAG 59.939 47.826 0.00 0.00 0.00 3.35
2842 3320 2.991190 GCGACAAGTAATTCCGAACAGA 59.009 45.455 0.00 0.00 0.00 3.41
2843 3321 2.222508 CGCGACAAGTAATTCCGAACAG 60.223 50.000 0.00 0.00 0.00 3.16
2844 3322 1.722464 CGCGACAAGTAATTCCGAACA 59.278 47.619 0.00 0.00 0.00 3.18
2845 3323 1.060122 CCGCGACAAGTAATTCCGAAC 59.940 52.381 8.23 0.00 0.00 3.95
2846 3324 1.067706 TCCGCGACAAGTAATTCCGAA 60.068 47.619 8.23 0.00 0.00 4.30
2847 3325 0.527113 TCCGCGACAAGTAATTCCGA 59.473 50.000 8.23 0.00 0.00 4.55
2848 3326 1.352114 TTCCGCGACAAGTAATTCCG 58.648 50.000 8.23 0.00 0.00 4.30
2849 3327 3.486875 CCATTTCCGCGACAAGTAATTCC 60.487 47.826 8.23 0.00 0.00 3.01
2850 3328 3.372822 TCCATTTCCGCGACAAGTAATTC 59.627 43.478 8.23 0.00 0.00 2.17
2851 3329 3.340034 TCCATTTCCGCGACAAGTAATT 58.660 40.909 8.23 0.00 0.00 1.40
2852 3330 2.980568 TCCATTTCCGCGACAAGTAAT 58.019 42.857 8.23 0.00 0.00 1.89
2853 3331 2.459060 TCCATTTCCGCGACAAGTAA 57.541 45.000 8.23 0.00 0.00 2.24
2854 3332 2.276201 CATCCATTTCCGCGACAAGTA 58.724 47.619 8.23 0.00 0.00 2.24
2855 3333 1.086696 CATCCATTTCCGCGACAAGT 58.913 50.000 8.23 0.00 0.00 3.16
2856 3334 1.086696 ACATCCATTTCCGCGACAAG 58.913 50.000 8.23 0.00 0.00 3.16
2857 3335 2.388310 TACATCCATTTCCGCGACAA 57.612 45.000 8.23 0.00 0.00 3.18
2858 3336 2.102420 AGATACATCCATTTCCGCGACA 59.898 45.455 8.23 0.00 0.00 4.35
2859 3337 2.755650 AGATACATCCATTTCCGCGAC 58.244 47.619 8.23 0.00 0.00 5.19
2860 3338 3.824443 TCTAGATACATCCATTTCCGCGA 59.176 43.478 8.23 0.00 0.00 5.87
2861 3339 4.174411 TCTAGATACATCCATTTCCGCG 57.826 45.455 0.00 0.00 0.00 6.46
2862 3340 5.482908 ACATCTAGATACATCCATTTCCGC 58.517 41.667 4.54 0.00 0.00 5.54
2863 3341 9.658799 AAATACATCTAGATACATCCATTTCCG 57.341 33.333 4.54 0.00 0.00 4.30
2907 3385 9.389570 CCGTTCGAAATTACTTGTCTTAAAAAT 57.610 29.630 0.00 0.00 0.00 1.82
2908 3386 8.610896 TCCGTTCGAAATTACTTGTCTTAAAAA 58.389 29.630 0.00 0.00 0.00 1.94
2909 3387 8.140677 TCCGTTCGAAATTACTTGTCTTAAAA 57.859 30.769 0.00 0.00 0.00 1.52
2910 3388 7.095523 CCTCCGTTCGAAATTACTTGTCTTAAA 60.096 37.037 0.00 0.00 0.00 1.52
2911 3389 6.366877 CCTCCGTTCGAAATTACTTGTCTTAA 59.633 38.462 0.00 0.00 0.00 1.85
2912 3390 5.865552 CCTCCGTTCGAAATTACTTGTCTTA 59.134 40.000 0.00 0.00 0.00 2.10
2913 3391 4.689345 CCTCCGTTCGAAATTACTTGTCTT 59.311 41.667 0.00 0.00 0.00 3.01
2914 3392 4.243270 CCTCCGTTCGAAATTACTTGTCT 58.757 43.478 0.00 0.00 0.00 3.41
2915 3393 3.370061 CCCTCCGTTCGAAATTACTTGTC 59.630 47.826 0.00 0.00 0.00 3.18
2916 3394 3.007182 TCCCTCCGTTCGAAATTACTTGT 59.993 43.478 0.00 0.00 0.00 3.16
2917 3395 3.592059 TCCCTCCGTTCGAAATTACTTG 58.408 45.455 0.00 0.00 0.00 3.16
2918 3396 3.260128 ACTCCCTCCGTTCGAAATTACTT 59.740 43.478 0.00 0.00 0.00 2.24
2919 3397 2.830321 ACTCCCTCCGTTCGAAATTACT 59.170 45.455 0.00 0.00 0.00 2.24
2920 3398 3.242549 ACTCCCTCCGTTCGAAATTAC 57.757 47.619 0.00 0.00 0.00 1.89
2921 3399 6.294899 CCATATACTCCCTCCGTTCGAAATTA 60.295 42.308 0.00 0.00 0.00 1.40
2922 3400 5.510861 CCATATACTCCCTCCGTTCGAAATT 60.511 44.000 0.00 0.00 0.00 1.82
2923 3401 4.021368 CCATATACTCCCTCCGTTCGAAAT 60.021 45.833 0.00 0.00 0.00 2.17
2924 3402 3.319972 CCATATACTCCCTCCGTTCGAAA 59.680 47.826 0.00 0.00 0.00 3.46
2925 3403 2.889045 CCATATACTCCCTCCGTTCGAA 59.111 50.000 0.00 0.00 0.00 3.71
2926 3404 2.511659 CCATATACTCCCTCCGTTCGA 58.488 52.381 0.00 0.00 0.00 3.71
2927 3405 1.067776 GCCATATACTCCCTCCGTTCG 60.068 57.143 0.00 0.00 0.00 3.95
2928 3406 1.968493 TGCCATATACTCCCTCCGTTC 59.032 52.381 0.00 0.00 0.00 3.95
2929 3407 2.097110 TGCCATATACTCCCTCCGTT 57.903 50.000 0.00 0.00 0.00 4.44
2930 3408 2.327325 ATGCCATATACTCCCTCCGT 57.673 50.000 0.00 0.00 0.00 4.69
2931 3409 4.893524 TGTATATGCCATATACTCCCTCCG 59.106 45.833 26.87 0.00 44.95 4.63
2932 3410 7.509318 TGTATGTATATGCCATATACTCCCTCC 59.491 40.741 26.87 14.06 44.95 4.30
2933 3411 8.478775 TGTATGTATATGCCATATACTCCCTC 57.521 38.462 26.87 16.44 44.95 4.30
3022 3507 1.537202 CACCAGCAAACCAGAGTAAGC 59.463 52.381 0.00 0.00 0.00 3.09
3052 3537 5.773176 TGAGTTAAAACATTTTCCTCCTCCC 59.227 40.000 11.32 0.00 32.04 4.30
3075 3569 4.094830 TCTCATGGATGGTTGATGGATG 57.905 45.455 0.00 0.00 0.00 3.51
3100 3594 2.810274 TGACAAGAAGAACAGCATGAGC 59.190 45.455 0.00 0.00 39.69 4.26
3129 3628 9.238368 CCACATTAAACCACCTTTCTATTCTAA 57.762 33.333 0.00 0.00 0.00 2.10
3175 3678 1.194781 TCTGGACCCAGCAGGAACTC 61.195 60.000 11.11 0.00 43.31 3.01
3196 3699 4.713553 TGGAGAAGTTTGCACAAGATGTA 58.286 39.130 0.00 0.00 0.00 2.29
3198 3701 3.057736 CCTGGAGAAGTTTGCACAAGATG 60.058 47.826 0.00 0.00 0.00 2.90
3297 3807 2.852495 TTCTTGCGAGATGGCGGTCC 62.852 60.000 3.98 0.00 35.06 4.46
3396 3908 1.134670 CAACATCCTCCTCCCGTCTTC 60.135 57.143 0.00 0.00 0.00 2.87
3422 3934 2.706339 AGAGGTGATGCAGATGTTCC 57.294 50.000 0.00 0.00 0.00 3.62
3425 3937 1.211457 GGGAAGAGGTGATGCAGATGT 59.789 52.381 0.00 0.00 0.00 3.06
3431 3943 1.026718 CAACGGGGAAGAGGTGATGC 61.027 60.000 0.00 0.00 0.00 3.91
3439 3951 3.006728 ATCGGGCAACGGGGAAGA 61.007 61.111 0.11 0.00 44.45 2.87
3480 4007 2.489938 TGGTAAGATGTGGTGCTTCC 57.510 50.000 0.00 0.00 0.00 3.46
3512 4039 0.530744 TGTAGACCACTCGTGATGGC 59.469 55.000 0.00 0.00 41.31 4.40
3600 4127 0.391263 ACGTCAAAATCTCGAGGGGC 60.391 55.000 13.56 0.00 0.00 5.80
3623 4150 1.555075 GACTTGAGGCACATCCCACTA 59.445 52.381 0.00 0.00 34.51 2.74
3640 4167 1.693062 CTCTAGCTGATGGCCATGACT 59.307 52.381 26.56 19.01 43.05 3.41
3647 4174 1.619827 AGAGATGCTCTAGCTGATGGC 59.380 52.381 0.00 0.00 39.28 4.40
3656 4183 3.874383 AGGTCTGCTAGAGATGCTCTA 57.126 47.619 0.00 4.30 41.50 2.43
3657 4184 2.694628 CAAGGTCTGCTAGAGATGCTCT 59.305 50.000 0.00 2.22 43.83 4.09
3658 4185 2.430332 ACAAGGTCTGCTAGAGATGCTC 59.570 50.000 0.00 0.00 31.63 4.26
3659 4186 2.465813 ACAAGGTCTGCTAGAGATGCT 58.534 47.619 0.00 0.00 31.63 3.79
3660 4187 2.977772 ACAAGGTCTGCTAGAGATGC 57.022 50.000 0.00 0.00 31.63 3.91
3661 4188 6.589523 GCAATATACAAGGTCTGCTAGAGATG 59.410 42.308 0.00 0.00 31.63 2.90
3662 4189 6.295575 GGCAATATACAAGGTCTGCTAGAGAT 60.296 42.308 0.00 0.00 31.63 2.75
3663 4190 5.011125 GGCAATATACAAGGTCTGCTAGAGA 59.989 44.000 0.00 0.00 0.00 3.10
3664 4191 5.233988 GGCAATATACAAGGTCTGCTAGAG 58.766 45.833 0.00 0.00 0.00 2.43
3665 4192 4.262036 CGGCAATATACAAGGTCTGCTAGA 60.262 45.833 0.00 0.00 0.00 2.43
3666 4193 3.990469 CGGCAATATACAAGGTCTGCTAG 59.010 47.826 0.00 0.00 0.00 3.42
3667 4194 3.639561 TCGGCAATATACAAGGTCTGCTA 59.360 43.478 0.00 0.00 0.00 3.49
3668 4195 2.434336 TCGGCAATATACAAGGTCTGCT 59.566 45.455 0.00 0.00 0.00 4.24
3669 4196 2.833794 TCGGCAATATACAAGGTCTGC 58.166 47.619 0.00 0.00 0.00 4.26
3670 4197 4.631131 TGATCGGCAATATACAAGGTCTG 58.369 43.478 0.00 0.00 0.00 3.51
3671 4198 4.800914 GCTGATCGGCAATATACAAGGTCT 60.801 45.833 21.88 0.00 0.00 3.85
3672 4199 3.433615 GCTGATCGGCAATATACAAGGTC 59.566 47.826 21.88 0.00 0.00 3.85
3673 4200 3.181455 TGCTGATCGGCAATATACAAGGT 60.181 43.478 26.87 0.00 39.43 3.50
3674 4201 3.402110 TGCTGATCGGCAATATACAAGG 58.598 45.455 26.87 0.00 39.43 3.61
3684 4211 0.602638 ACGAGTTTTGCTGATCGGCA 60.603 50.000 25.40 25.40 39.42 5.69
3685 4212 0.517316 AACGAGTTTTGCTGATCGGC 59.483 50.000 20.08 20.08 39.42 5.54
3686 4213 2.969443 AAACGAGTTTTGCTGATCGG 57.031 45.000 0.00 0.00 39.42 4.18
3687 4214 4.383774 TGTAAACGAGTTTTGCTGATCG 57.616 40.909 6.53 0.00 40.86 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.