>input_sequence_44910
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--------------------------------ATGGGGGCCGGCAACCACTCGCCGTCGTCCGCGAAGACCTCACCTCGC
GGCTCTGGCGT---AGGCGGCGGAGGCGAGCAGTATTCCCCGTCGACCAAGTCTCCGCGCGCCGGCGCCGGCGGCGGAGG
CGGAGGCGAGCACTACTCCGCGTCGAGCAAGTCCCCGCGCGC---CGGCCTCGGCGGCGTCTCCTCCTTGCTGCCGAGCG
GCGGCGTGTCGTCCCTGCTGCCGAGCGGCG---------------------------CCGTGGCGACGCTGCTCGAGAGC
AGGTGGACGCTCTCGGGCGCCATCACCGTGTTCCTGTTCCTCGCCGTCACGCTCACCGTGACGACGTCGTCGTCGTCGCT
GTCCCCCGTCTCGGCCACCTTCTTCTCCTTCCTCCCGGCCGGCCGCGCCGACCTCGTCCAGCCGCCGCAAGTCCAGCAGC
AGCCGCAGGCCCCGGCGACCCCGCCGCCGCCTCCGCCCGGCGCCGGCGTGCCGCGGCTGGCGTACCTCATCTCCGGGTCC
AAGGGCGACCTGGACCGGCTGTGGCGCACGCTGCACGCGCTCTACCACCCGCGCAACCTGTACGTGGTGCACCTGGACCG
CGAGGCGCCCGTGGGCGAGCGGCTGGAGCTGGCGGCGCGGGTGGCCAACAGCACCGTGTTCCGCCGCGTCGGCAACGTGG
AGGTGATCCGGCGCGCCAACATGGTGACCTACCGCGGGCCGACCATGGTGGCCAACACCCTGCACGCCTGCGCCGTGCTC
CTCCGCCGCAGCCGCGACTGGGACTGGTTCATCAACCTCTCCGCCTCCGACTACCCTCTCATGTCCCAGGACGGTACGTG
CCTTAATTTTTTTCAGC---------------------AAAC-------------------------------------C
GTTTAAAATATTCCCGGCTTCGCTTGACACGATCTCCATCCATAATCGAATCCGCTGACTAACCAAC------------T
G------------CAGATGTCCTGCACGTATTCTCGACGCTGCCGCGCAACGTCAACTTCGTCGAGCACACCAGCCGCCT
CGGCTGGAAGGAGTGAGCGCTCTCCCCTCTCCTTCTTCCTC---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------CCCTCCGGCCGGCGATC------
--------------GACGGCGGCGACTGACTGTGGCTTGGCTTGATGTGCAGGGGGCAGCGCGGGCAGCCGCTGATCGTG
GACCCGGGGCTGTACGCGTCGAAGAAGCAGGACATCTTCTACGCGTCCGGCCG---GCGGGAGCTGCCGACGGCGTTCAG
GCTGTACACGGGGTCGGCGTGGGTGGCGCTGACGCGGGACTTCGCCGAGTACGTGGTGTGGGGGTGGGACAACCTGCCGC
GCACCATGCTCATGTACTACGCCAACTTCGTGTCGTCGCCGGAGGGCTACTTCCAGACGGTGCTCTGCAACGCGCCCCGG
TTCGTGCCCACCGTGGCCAACCACGACCTCCACCACATCCAGTGGGACGTGCCGCCGCGCCAGCACCCGCACGCGCTCAC
GCTCGGGGACATGGACCGCATGGTGCGCAGCGACGCGCCCTTCGCCCGCAAGTTCGCGCGCGACGACCCCGTGCTCGACG
CCATCGACGCCCAGCTGCTTGGCGGCCGCGGCGGGAACGGCACGGC---GGCGGGGATGTTCGTGCGGGGGGGCTGGTGC
GGCGAGAGCGGGGACTGCGAGGGCGCCGCCGGCGC---CGAGGACTGGGTGCTCAGGCCGGGGCCCGGCGCCGAGAGGCT
GCGCAGGCTCATGGACCGGATCGTCAGGTCGGAGGCGTTCGCTAACCGCCAGTGCAAGTAG-------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------------------
>chr3D_1_TraesCS3D01G140900
ATTTGAGAATCTAGTATAAGATGTCCGGATGCAGTTGTGTTAATTTGAGCAATGCCCGATCACTACCCGCGGACGGGCTT
TTGAGGGGGAATATTTGTCATATGCGGCTGATGCTCTAACATCGTACTGCTCCTAGTTTGCCCTATGCCGTCGCGTGAAA
GAAGAACTAGTATGGAGAGGGAAAACTAGAGAGAGTCCGTGCGTGATGCGACAGAAGCAACGAGAGGGAGAA---TTTTG
CGTGTGTGGAGCGGGGGAGCAGGGG------AGCGCATTGCGTACGGAGGAGGAGAGGAGGGCGCGTACGGTACGGAGCG
GT-----GGATGGTATTTCGGGGTAACGGCCGTGTTCGCCGGGGCAGGGTCGCCACTTGCCGGGCCGCCGCGCGCCACTC
CGCCCGAATATGTTAATGCCTGTTT------AGCCTCTCCCGCGCACTATATATCCTCTCATGATCCTCATCTCCGGCTA
CAATTAGTAGTAACCGCT-CCCCCGCAATACCTGCCATCTC---TCCTCCTCCACCATCGATCCACTCTGAC--------
---------------CTCTGCTCGACCA--------GATCAATCGATCTTCCTCTTCTTGGTC--------GGTTTCTTC
ATCCTCTGTGACGAAGGTGCTGTCGTCGTCGATCGATTGATTTATTGATCGATCGAGTGC----TCCAACAACTGGTCAA
TAGCTGGGATCATAGGTCGTCTGCTCAGTTGCATCGCCATCGCCTTCAATTCCACTCGTTTTCAAGCTCCCGTCGCCCCC
GTTGATCGGATCAAAGGGATTGGGATTAACCTAACCTAACCTAACCTCGCGACCAAATTCCCCTCCCCACTTGACGTTGG
TCCACCGGCTGATTCCTTGTGTCCGTCACAACAAAGGATTTCT-TCTTCTCTGCACCTCGTATCTATCCTACATAGCGCG
TCCACGCGGGCTCGGTGGCGGTTCGCGTACGTGATCCTCGGGAGAATTGACAGTTGTGAT----AGCGCGCGCGTGGGCG
TGGGCGTGGGCGATCGACGCGACCGCGGCAGCATGGGGGCCGGCAACCACTCGCCGTCGTCCGCGAAGACCTCACCTCGC
GGCTCTGGCGT---AGGCGGCGGAGGCGAGCAGTATTCCCCGTCGACCAAGTCTCCGCGCGCCGGCGCCGGCGGCGGAGG
CGGAGGCGAGCACTACTCCGCGTCGAGCAAGTCCCCGCGCGC---CGGCCTCGGCGGCGTCTCCTCCTTGCTGCCGAGCG
GCGGCGTGTCGTCCCTGCTGCCGAGCGGCG---------------------------CCGTGGCGACGCTGCTCGAGAGC
AGGTGGACGCTCTCGGGCGCCATCACCGTGTTCCTGTTCCTCGCCGTCACGCTCACCGTGACGACGTCGTCGTCGTCGCT
GTCCCCCGTCTCGGCCACCTTCTTCTCCTTCCTCCCGGCCGGCCGCGCCGACCTCGTCCAGCCGCCGCAAGTCCAGCAGC
AGCCGCAGGCCCCGGCGACCCCGCCGCCGCCTCCGCCCGGCGCCGGCGTGCCGCGGCTGGCGTACCTCATCTCCGGGTCC
AAGGGCGACCTGGACCGGCTGTGGCGCACGCTGCACGCGCTCTACCACCCGCGCAACCTGTACGTGGTGCACCTGGACCG
CGAGGCGCCCGTGGGCGAGCGGCTGGAGCTGGCGGCGCGGGTGGCCAACAGCACCGTGTTCCGCCGCGTCGGCAACGTGG
AGGTGATCCGGCGCGCCAACATGGTGACCTACCGCGGGCCGACCATGGTGGCCAACACCCTGCACGCCTGCGCCGTGCTC
CTCCGCCGCAGCCGCGACTGGGACTGGTTCATCAACCTCTCCGCCTCCGACTACCCTCTCATGTCCCAGGACGGTACGTG
CCTTAATTTTTTTCAGC---------------------AAAC-------------------------------------C
GTTTAAAATATTCCCGGCTTCGCTTGACACGATCTCCATCCATAATCGAATCCGCTGACTAACCAAC------------T
G------------CAGATGTCCTGCACGTATTCTCGACGCTGCCGCGCAACGTCAACTTCGTCGAGCACACCAGCCGCCT
CGGCTGGAAGGAGTGAGCGCTCTCCCCTCTCCTTCTTCCTC---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------CCCTCCGGCCGGCGATC------
--------------GACGGCGGCGACTGACTGTGGCTTGGCTTGATGTGCAGGGGGCAGCGCGGGCAGCCGCTGATCGTG
GACCCGGGGCTGTACGCGTCGAAGAAGCAGGACATCTTCTACGCGTCCGGCCG---GCGGGAGCTGCCGACGGCGTTCAG
GCTGTACACGGGGTCGGCGTGGGTGGCGCTGACGCGGGACTTCGCCGAGTACGTGGTGTGGGGGTGGGACAACCTGCCGC
GCACCATGCTCATGTACTACGCCAACTTCGTGTCGTCGCCGGAGGGCTACTTCCAGACGGTGCTCTGCAACGCGCCCCGG
TTCGTGCCCACCGTGGCCAACCACGACCTCCACCACATCCAGTGGGACGTGCCGCCGCGCCAGCACCCGCACGCGCTCAC
GCTCGGGGACATGGACCGCATGGTGCGCAGCGACGCGCCCTTCGCCCGCAAGTTCGCGCGCGACGACCCCGTGCTCGACG
CCATCGACGCCCAGCTGCTTGGCGGCCGCGGCGGGAACGGCACGGC---GGCGGGGATGTTCGTGCGGGGGGGCTGGTGC
GGCGAGAGCGGGGACTGCGAGGGCGCCGCCGGCGC---CGAGGACTGGGTGCTCAGGCCGGGGCCCGGCGCCGAGAGGCT
GCGCAGGCTCATGGACCGGATCGTCAGGTCGGAGGCGTTCGCTAACCGCCAGTGCAAGTAGCTAAGCTCGGCTTGAGACA
TGGTCGGTCGTGCGTGCAAGCCAGGTTAGCGTCACGCGCGCCCTGTGTGGTGTGC-----TCGTTTCCTTCGACGTTTGT
ACAAAATCATGCATCTCAAGGGCGTACATAACTACTCCCTCTGTTCGGAATTACTTGTCGCGGAAATGGATGTATCTAGA
TGTATTTTAGTTTTAGATACATCCATTTTTAAGACAAGTAATTTCGAACGGAGGGAGTATATGGCATATA----CATACA
TACATACATAGAGCGAGAAATATAG---AGAGCTTCGTGGTACATTATTGGTTTTATTTTTACAGTGCTTACTCTGGTTT
GCTGGTGTATGGACTCGGGAGGAGGAAAA---------TGTTTTAACTCATCCATCAACCATCCATGAGATGAGCTCATG
CTGTTCTTCTTGTCATA-----TTTCATTAGAATAGAAAGGTGGTTT----AATGTGGTCATGGGAGTTTCTTGTTTGAG
TTCCTGCTGGGTCCAGATTACATCTTGTGCAAACTTCTCCAGGAATCAATCGAATGATTCAATTAAAAAACACAG----A
TGATGGAAAGTAAACACGTCTGAAA---GAAACTGATGCCAGAGTCGGACCGCCATCTCGCAAGAAAAACAGGATAAAGG
AGACCTCGACTCTTAACTCTTAAGGCTTAAGCAAGCAGAAGGGTTGCTGTCGGAGAAGAGAGGT--AGAAGACGGGAGGA
GGATGTTGGCGATGGAACATCTGCATCACCTCTTCCCCG------------TTGCCCGATCGGTGGCGTG---GCACCTG
GACCGTGGAAGCACCACATCTTACCATTAGGAGACAAGGCCATCACGAGTGGTCTACAAAGGCCAAATCTTATCGTCCGA
AGATACGCCGACACGCCTGAAACGAATTTCGATCAAATTCATACGGGCCCCTCGAGATTTTGACGTTTCTAGTGGGATGT
GCCTCAAGTCATGGCCATCAGCTAGAGCATCTCTAGCAGACCTTGTATATTGCCGATCAGCAAAACTCGTTTACA
>chr3B_116
--------------------------------------------------------------------------------
-----------------------------------CTAACGTCGTACTGCTCCTAGTTTGACCAATGTCGTCGCGTGAAA
GAAGAACTGGTATAGAGAGGGGAAAAT----AGAGTCCGTGCATGATGCGACAGAAGCAACGAGAGGGA-AA---ATTTG
CGTGTGTGGAGCGAGGGAGCAGGGG------AGCGCATTGCGTACGGAGGAGGAGAGGAGGGCGCGTACGGTACGGAGCA
GT-----GGATGGTATTTCGGGGTAACGGCCGTGTTAGCCGGGGCAGCTTCGCCACTTGCCGGGCCGCCGCGCGCCACTC
CGCCCGAATATGTTAGTGCTTGTTT------AGTTTCTCCCGCGCACTATATATCGTCTCATGATCCTCATCTCCGGCTA
CAATTAATAGTAACCGCTCCCCCCGCAATACCTGCCATCTCCCCTCCTCCTCCACCATCGATCTACTCTCCCTTACTTTC
T----------CTCTCCCTGCTCGACTAGATCGCTCGATCGATCATCCTCTTC--------TTGGTTGGTTGATTTCATC
ATCCTCTGTGACGAAGGTGC---CGTCGTTGATTGATTGATGGATTGATCGATCGATCAAGTGTTCCAACAACTGGTCAA
TAGTTGGGATCTTCGGTCGTCTGCT------CATCGCCATCGCCTTCAATTCCACTCGTTTTCAAGCTCCCGTCGCCCCC
GTTGATCGGATCAAAGGGATTGGGATTAACC-----TAACCTAACCTCGCGACCAAATTCCCCTCCCCACTTGACGTTGG
TCCACCGGCCGATTCCTTTTGTCTATCGCGACAAGGAATTCTTCTTTTCTTTGCACCTCGTA----TCCTACATAGCGCG
TCCACGCGGGCTCGGTGGCGGTTCGCCTACGTGATCCTCGGGAGAATTGACAGTTGTGAT----AGCGCGCGCGCGGGCG
CGGGCGTGGGCGATCGACGCGAGCGCGGCAGCATGGGGGCCGGCAACCACTCGCCGTCGTCCGCCAAGACGTCCCCTCGC
GGCTCTGGCGCCGGAGGTGGCGGAGACGAGCAGTACTCCCCGTCGTCCAAGTCTCCGCGCGCCGGCGCCGGCGGCGGAGG
CG------AGCACTACTCCGCGTCGAGCAAGTCCCCGCGCGC---CGGCCTCGGCGGCGTGTCGTCCTTGCTGCCGAGCG
GCGGCGTGTCGTCCCTGCTGCCGAGCGGCGGCGTGTCGTCCCTGCTTCCGAGCGGCGCCGTGGCGACGCTGCTCGAGAGC
AGGTGGACGCTCTCGGGCGCGATCACCGTGTTCCTGTTCCTCGCCGTCACGCTCACCGTGACGACGTCGTCGTCGTCGCT
GTCCCCCGTCTCGGCCACCTTCTTCTCCTTCCTCCCGGCCGGCCGCGCCGCCCTCGTCGAGCCGGCGCAGGCCCCA----
--------------GCGACCCCGCCGCCGCCTCCGCCCGGCGCCGGCGTGCCGCGGCTGGCGTACCTCATCTCAGGGTCC
AAGGGCGACCTGGACCGGCTGTGGCGCACGCTGCACGCGCTCTACCACCCGCGCAACCTCTACGTGGTGCACCTGGACCG
CGAGGCGCCCGTGGGCGAGCGGCTGGAGCTGGCGGCGCGGGTGGCCAACAGCACCGTGTTCCGGCGCGTCGGCAACGTGG
AGGTGATCCGGCGTGCCAACATGGTGACCTACCGCGGGCCGACCATGGTCTCCAACACCCTGCACGCCTGCGCCGTGCTC
CTCCGCCGCAGCCGCGACTGGGACTGGTTCATCAACCTCTCCGCCTCCGACTACCCGCTCATGTCCCAGGACGGTACGTG
CCTTATTTTTTT--CAGC-------------------AAAAC-------------------------------------C
GTTTAAAATATTCCGGCTTT-GCTTGACACGATCTCTATCCATAATCGAATCCGCTGACTAACTAACTGCGGCGACGCGC
G------------CAGATGTCCTGCACGTATTCTCGACGCTGCCGCGCAACGTCAACTTCATCGAGCACACCAGCCGCCT
CGGCTGGAAGGAGTGAGCACTCTTCCTTCTCCTTCTTCCCC---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------GCCTCCGGCGACCGATATTTACG
TATGAGCTGGAACTGACGGCGGCGAGCGACTGTGTCA-----TGATATGCAGGGGGCAGCGCGCGCAGCCGCTGATCGTG
GACCCGGGGCTGTACGCGTCGAAGAAGCAGGACATCTTCTACGCGTCCGGCCG---GCGGGAGCTGCCGACGGCGTTCAG
GCTGTACACGGGGTCGGCGTGGGTGGCGCTGACGCGGGACTTCACCGAGTACGTGGTGTGGGGGTGGGACAACCTGCCGC
GGACGCTGCTCATGTACTACGCCAACTTCGTGTCGTCGCCGGAGGGCTACTTCCAGACGGTGGTCTGCAACGCGCCCCGG
TTCGTGCCCACCGTGGCCAACCACGACCTCCACCACATCCAGTGGGACGTGCCGCCGCGCCAGCACCCGCACGCGCTCAC
GCTCGGGGACATGGACCGCATGGTGCGCAGCGACGCGCCCTTCGCCCGCAAGTTCGCGCGCGACGACCCCGTGCTCGACG
CCATCGACGCCCAGCTGCTGGGCGGCCGCGGCGGGAACGGCACGGC---GGCGGGGATGTTCGTGGCGGGAGGCTGGTGC
GGCGAGAGCGGGGACTGCGAGGGCGCCGCCGGCGC---CGAGGACTGGGTGCTGAGGCCGGGGCCCGGCGCCGAGAGGCT
GCGCAGGCTCATGGACCGGATCGTCAGGTCGGAGGCGTTCGCTAACCGCCAGTGCAAGTAGCTAAGCTCGGGTT--GACA
TGGTCGGTCGTGCGTGCAAGCCAGGTTAGCGTCACGCACGCACTGTGTGGTGTGCTCGTTTCGTTTCCTTCGACGTTTGT
ACAAAATCATGCATC---AGGGCGTACATAACTAA---------------------------------------------
----------------------------------------------------------ATATGGCATATACATACATTCA
TACATACATAGAGCGAGAAATATAG---AGAGCTTCGTGGTACATTACTAGTTCTATTTTTACAGTACTTACTCTGGTTT
GCTGGTGCATGGACTCACGAGGAGGAAAA---------TGTTTTAACTGATCCGTCAACCATCCATTAGATGAACTCATG
CTGTTCTTCTTATCT----------------AATAGAGAGGTGGTTT----AATGTGGTCATGGGAGTTTCTTGTTTCAG
TTCCTGCTGGGTCCAGATAAAATCTTGTGCAAACTTCTCCAGGAATCAATCGAAGGATTCAATTGAAAAACACAG--AGA
TGATGGAAAGTAAACACGTCTGAAA---GAAACTGATGCCAGAGTCAGACCGCCATCTCGCAAGAAAAACAGGATAAAGG
AGACCTCGACTCTTAACTCGTAAGGCTTAAGCCAGCAGAAGGGTTGCTGTCGGGGAAGAGAGGT--AAAAGACGGGAGGA
GGATGTTGGCAATCGAGCATCTACATCACCGCTTCCCGAGCTTTCCG----TTGCCTGATCGGTGGCGTG---GCACCTG
GACCGTAGAAGCACCACATCTTACCATTAGGAGACAAGACCATCACGAGTGGTCTACAAAGGCCAAATCTTATCGTCCGA
AGATACGCCGACACGCCTAAATAAAATTTCGATCAAATTCATACGGCCCCCTCGAGATTTTGACGTTTCAAGTGGGATGT
GCCTCAGGTCATGACCA----------------------------------------------------------
>chr3A_222
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------GAGAGGGAGAGCATATTTG
CGTGTGTGGAGCGAGGGAGCAGGGGGGAGGGAGCGCATTGCGTACGGAGAAGGAGAGGAGGGCGCGTACGGTACGGGGCG
GTGGATGGGATGGTATTTCGGGGTAACGGCCGTGTTAGCCGGGGCAGCTCCGCCACTTGCCGGGCCGCCGCGCGCCACTC
CGCCCGAAATATGTTAACCTTTGTTCGGTCGAGTCTCTCCCGCGCACTATATATCGTCTCATGATCCTCGTCTCCGGCCA
CAATTAATAGTAACCGCTCCCCCCGCAATACCTGCCAT-TCCCCCCCTCCTCCACCATCGATCTACTCTCCATTACTTTC
TCCCTCCCTCCCTCGCTCTGCTCGACTAGATCGCTCGATCAATCGATCTTCCTTTTCTTGGTTGGCTGATTGGTTTCATC
GTCCTCTGTGACGAAGGCGCTGTCGTCGTTGATGGATTGATGGATTGATCGATCGAGTGC----TGCAGCAACTGGTCAA
TAGGTCTGTTCGTGGGTCGTCTGCTCAGTTGCATCGCCATCGCCTTCAATTCCACTCGTTTTCAAGC----------CCC
GTTGATCGGATCAAAGGGGCCGGGATTAACC-----TGACCTAACCTCGCGACCGAATTCCCCTCCCCACTTGACGTCCG
TCCACCGGCCGTGTCCATCGCAAC---------AAGGAATTCT-TCTTCTTTGCACCTCGTATCCTATTCCTACATA---
-----GCGGGCTCGGTGGCGGTTCGCGTACGTCATCCTCGGGAGAATTGACAGTTGTGATTCATAGCGCGCGCGC-----
-GGGCGCGGGCGATCGAGGCGAGCAAGGCGGCATGGGGGCCGAGCACCACTCGCCGTCGTCGGCCAAGACCTCCCCTCGC
GGCTCCGGCGT---GGGTGGCGGGGGCGAGCAGTACTCCCCGTCGACCAAGTCTCCGCGCGGTGGTGCCGGAGGCGGAGG
CG------AGCACTACTCCGCGTCGAGCAAGTCCCCGCGCGCTGGCGGCATCGGCGGTGTCTCGTCCTTGCTCCCGAGCG
GCGGCGTGTCGTCCCTGCTGCCGAGCGGCG---------------------------CGGTGGCGACGCTGCTCGAGAGC
AGGTGGACGCTCTCCGGCGCCATCACCGTGTTCCTGTTCCTCGCCGTCACGCTCACCGTCACGACGTCGTCGTCGTCGCT
GTCCCCCGTCTCGGCCTCCTTCTTCTCCTTCCTCCCGGCCGGCCGCGCCGCCCTCGTCGAGCCGCCGCAGGCCCAGCAGC
AGCCGCAGG---------CCCCGCCGCCGCCTCCGCCCGGCGCCGGCGTGCCGCGGCTGGCGTACCTCGTGTCCGGGTCC
AAGGGCGACCTGGACCGGCTGTGGCGCGCGCTGCACGCGCTCTACCACCCGCGCAACCTCTACGTGGTGCACCTGGACCG
CGAGGCGCCCGTGGGCGAGCGGCTGGAGCTGGCGGCGCGGGTGGCCAACAGCACCGTCTTCCGCCGCGTCGGCAACGTGG
AGGTGATCCGCCGCGCCAACATGGTGACCTACCGCGGGCCGACCATGGTGGCCAACACCCTGCACGCCTGCGCCGTGCTC
CTCCGCCGCAGCCGCGACTGGGACTGGTTCATCAACCTCTCCGCCTCCGACTACCCGCTCATGTCCCAGGACGGTACGCG
CCTCATTTTTTCCCCAGC-------------------AAAAC-------------------------------------T
GTTTAAAATATTGCCATCTCATCTATCCATAAA------CCATAATCGAATCCGCTGACCAACCAAC------------C
G------------CAGATGTGCTGCACGTATTCTCGACGCTGCCGCGCAACGTCAACTTCGTCGAGCACACCAGCCGCCT
CGGCTGGAAGGAGTGAGCGCCCTCCCCTCCCCTTCTTCCCC---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------CCCTCCGGCCGGCGATC------
--------------CACGGCGGCGACTGACCGTGGCTTGGCTTGATGTGCAGGGGGCAGCGCGCGCAGCCGCTGATCGTG
GACCCGGGGCTGTACGCGTCGAAGAAGCAGGACATCTTCTACGCGTCCGGGCG---GCGGGAGCTGCCGACGGCGTTCCG
GCTGTACACGGGGTCGGCGTGGGTGGCGCTGACGCGGGACTTCGCCGAGTACGTGGTGTGGGGGTGGGACAACCTGCCGC
GGACGCTGCTCATGTACTACGCCAACTTCGTGTCGTCGCCGGAGGGCTACTTCCAGACGGTGCTCTGCAACGCGCCCCGG
TTCGTGCCCACCGTCGCCAACCACGACCTCCACCACATCCAGTGGGACGTGCCGCCGCGCCAGCACCCGCACGCGCTCAC
GCTCGGGGACATGGACCGCATGGTGCGCAGCGACGCGCCGTTCGCGCGCAAGTTCGCGCGCGACGACCCCGTGCTCGACG
CCATCGACGCCCAGCTGCTGGGCGGCCGCGGCGGGAACGGCACGGCAGGGGCGGGGATGTTCGTGCGGGGAGGCTGGTGC
GGCGAGAACGGGGACTGCGAGGGCGCCGCCGGCGA---CGAGGACTGGGTGCTCCGGCCCGGGCCCGGCGCCGAGCGGCT
GCGCAGGCTCATGGACCGGATCGTCAGGTCGGAGGCGTTCGCGAACCGCCAGTGCAAGTAGCTAAGGTCGGCTT--GACA
TGGTCGGTCGTGCGTGCAAGCCAGGTTAGCGTCATGCATGCACTGTGTGGTGTGC-----TCGTTTCCTTCGACGTTTGT
ACAAAATCATGCATC---AGGGCGTACATACCGTATGG------------------------------------------
--------------------------------------------------------------------------CATACA
TACATACATAGAGCGAGAAATATAGTAGAGAGCTTCGTGGTACATTATTGGTTTTATTACGGCACTCAT--CTCTGGTTT
GCTGGTGTATGGACTCAGGAGGAGGAAAAATGTTTAAATGTTTTAACTGATCCATCAATCACCCATTAGATGGACACATG
TTGTTCCTCTTCTTAATCACATTTTCAGTAGTAAAGAAAGGTGGTTCAGTCAATGTGGTCATGGGAGTTTCTTGCTCCAG
TTAATGCTGGGTCCAGATAAAATCCTGTGCAAACTTCTCCCGGAATCAATCGAAGGATTCGATTAAAAAACACGTACAGA
TGATGTGAAGTAAACAAGTCTGAAGACTGAAACTGATGCCGGAGTCCGACCGTCGTCTCGCAAGAAAAACAGGATAAAGG
AGACCTCGACTCTGAACTCTTAACGCTTAAGCAAGCAGCAGGGTTGCTGTCGGAGATGAGCAGTAGAAAAAACAGGTGGA
GGATGTTGGCG-------------ATCACCGCTTCTCGAGCTTTCGATTGATTGCCCGATCGGTGCCATGGCAGCACCTG
GACCGTAGAAGCAC-ACATCTTGCCGTTAGGAGACAAGACCATTACGAGTGGTCTAC-----------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------
>chr4B_1451
CCCGGG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------CGCTGACGTGCCGCGGCTTGCCTACCTCATCTCTGGGTCC
AGAGGTGACCTGGACCGGCTGTGGCGGGTGCTGCACGCGCTCTACCACCCGCGAAACCTGTACGTGGTGCACCTGGACCT
GAAATCCCCGGTGGAGGACCGACTGGAGCTGGCGACGCGGGTGGGAAACAACACTGTTTTCCAGCGCATCGGCAACGTCG
AGGTGATCCGGCGCGCCAACATGGTGACTTACCGCGGGCCGACGATGGTCGCCCACACCCTGCATGCCTGCGCCGTGCTC
CTCCGCCGCAGCCGCGACTGGGACTGGTTCATCAACCTCTCTGCCTCAGACTACCCGCTCATGACCCAGGACGGTACGGT
ACTGCGCACCGC---GCTTATTATTCCTGGTTCTTTAACTTTTCAGCTCAAATAACAGAATTAATGGTATGTGTGTGTAT
GTATACACAT----------------------------------------------------------------------
-----------CACAGATATCCTCCATGTATTCTCCACGTTGCCGAGGAACGTCAGCTTCATGGAGCATACCAGCAACCT
GGGCCAGAAGGCGTGAGTATTGTTTACCACTCTCTCCGTCCTATAATATACGAGTGTTTTTTACGCTAGC----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------TTATAAGTTTCTTATTTGTCGATCGACCAGCTGGTCGGTTGAC------
--------------GATGACGGCTACTGATTAGACGGTCG----C--TGCAGGGAGGGCCGGGCGAAGCCTCTGATCGTG
GACCCGGGGCTGTACATGTCGGCTAAGAAGGAAGTCTTCAACGTGTGGCCAGC---GCGGCAGCTGCCGACGGCGTTCAA
GCTGTACACGGGGTCGGCGTGGGTGGTGCTGTCGCGGGACTTCGTCGAATACGTGGTGTGGGGGTGGGATAACCTGCCGC
GGACGCTTCTCATGTACTACGCCAACTTCGTCTCCTCCCCGGAGGGCTACTTCCAGACGGTGCTCTGCAACGCGCCCAGC
TTCGTGCGCACCGTCGCCAACCACGACCTGCACCACATCCAGTGGGACGTCCCGGCGAGGCAGCACCCGCGGGCGCTCGG
GCTCCCCGACAGGGACGGCATGGTGGGCAGCGGCACGCCCTTCGCACGCAAGTTCGAGCGCGACGACCCTGTGCTTGATG
TCATAGACGCCGACCTTCTGCTCGGCCGTGGGAGGAACGGCACGGC---GGCCGGGATGTTTGTGCCCGGCGGCTGGTGC
GGCCAACACCGGGACTGCGGTGCCGCCCGCGCCAATGTCGACGACTGGGTGCTCAGCCCTGGGCCCGGTGCCGAGAGGCT
GCGGAGGCTCATGGACAGGATCGTCAGGTCCCAGGCCTTCGACGGCAGCCAGTGCAAATAGC------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------
>chr4D_1451
CCCGGG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------CGCGGACGTGCCGCGGCTGGCCTACCTCGTCTCCGGGTCC
AAGGGCTACCTGGAC------TGGCGGGTGCTGCACGCGCTCTACCACCCGCGCAACCTGTACGTGGTGCACCTGGACCT
GGAGTCGCCGGCGGGGGAGCGGGTGGAGCTGGCGGCGCGGGTGGGCAACAGCACCGTGTTCCAGCGCTTCGGCAACGTCG
AGGTGATCCGGCGCGCCAACATGGTGACGTACCGCGGGCCGACGATGGTGGCCAACACCCTGCATGCCTGCGCCGTCCTC
CTCCGCCGCAGCCGCGACTGGGACTGGTTCATCAACCTCTCTGCCTCCGACTACCCGCTCATGACCCAGGACGGTACGTA
CTAGATCTGCCTTGAGCATATTATTCCTGCATAAACTAATAG-------------------------------------T
GTATACACGTGCACCATCTGATCTGACTAATCC-------------------------------AATTGCGGCGACACGA
CACGTACGTCACACAGATATCCTTCACGTATTCTCGACGCTACCGAGGAACATCAGCTTCATGGAGCATTTCAGCAAGCT
GGGCCGGATGGAGTGAGTACTGTCTTCTAGCTTACTTCCTCAATTTCATGATGTACTGCCTTCACGTTTTTCCAGATTCA
ACTCTGATCATAAATTTAATCAAACATGGACGACTGCGGCGGAATCATGACAAATACCTTTGAATTTGTATTCGAAAGAA
GTTTTCAAATGTATAATTTTTTTAGTAAAATAATTCATGTATTATTGATCTAATTTGTAGTTAAAATTGAATCTCGAAAT
GTGTGGGCGCACTACATTATAAAATGGAGGGTTGTAATTTTTTTCTTTGTTGATCCACCACGTACGAG------------
--------------------------TGATTCGACGCTCGCTCGC--TGCAGGGACACCCGGGCGAAGCCTCTCATCGTG
GACCCGGGGCTGTACATGTCGACCAAGCAGGACATCTTCACCGTGTCGGCGCAGCAGCGGGAGCTGCCGACGGCGTTCAA
GCTGCACATGGGG----------------------------TCGTCGAGTACGTGGTGTGGGGGTGGGACAACCTGCCGC
GGACGCTCCTCATGTACTACACCAACTTCGTCTCCTCCCCAGAAGGCTATTTCCAGACCGTGATGTGCAACGCGCCCGGC
TTCGTGCGCACCGTCGCCAACCATGACCTGCACCACATCCGGTGGGACGTCCCGCCGAGGCAGCACCCGTGTTTGCTCGG
GCTCGCCGACAGGGACGGAATGGTGGGCAGCGACGTGCCTTTCGCGCGCAAGTTCGCGCGCGACGATCCCGTGCTCGATG
CCATAGACGCAGACCTTCTGCTCGGCCGCGGGAGGAATGGCACGGC---GGCCGGGCTGTTCGTGCCCGGTGCCTGGTGC
GGCCAACGCGGGGACTGCGGTGCCGCCCGCGCCAATGTCGACGACTGGGTGCTCAGGCCTGGCCCCGGTGCCGAGAGGTT
GCAGAGGCTCATGGACAGGATCGTTAGGTCTGAGACCTTCGCCAATAGCCAGT---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------
>SNPs
SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S-------------------S--S---S------------
--------S----S-------S---S-SSSS-----------S--------------------------------S----
-------------S------------------------------------------------------------------
------------------------------------S----------SS-------------------------------
-------------------S-------------S---------------------S------------------------
------S--------------------------------------------------------S-----SS---------
--------------------------S--------------------------S--------S--------------S--
-----------------------------S---S-------SS-------------------------------------
---S-------S-S------------------------------------------------------------------
-------------------------------SSSSS--------------------------------------------
---------S--------S-----S--S-S--------------------S-------------SS--------------
--------------------------------------------------------------------------S-----
S---------------------S-----------------------------------------S--------S------
-----------------S-----------------S--------------------------------------------
--SSSSSS-------------------------------------------------------S----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------S-------S----------S-S--------
---------SSSSS------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------S-----------------------
-----S--------------------------------------------------------------------------
----------------S---S---------------S------------------------------------------S
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------S----------------
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-S--SS--------------------------------------------------------------------------
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-------------------S--------------------------------------------------S---------
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--------------------------------------------------------------------------SS----
-------------------------------------S---S--------------------------------------
---------------SSS----------------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------
------------------------------------------------------------------S-------------
----------------S-------------------------------S-----------------S------S------
-----------S---SS----------S-------------------------------------------------S--
------------------S-S---------------------------------S-------------------------
----------------------------------------------S---------------------------------
-------------------------------------------------------------------S------------
-------------S--S-----S-------S------SS-----------------------------------------
------S-------------------------------S-----------------------------------------
------------------S--SSS----------------------S----------------------S----------
------S------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_64
--------------------------------------------TTGAGCAATGCCCGATCACT----------------
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>reverse_1897
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--------------------------------------------------------TCTCATGTCCCAGGACGGTA----
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>forward_115
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---------------TGTCATATGCGGCTGATGCT---------------------------------------------
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>reverse_2021
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--------------------CGCTTGACACGATCTCCATC----------------------------------------
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>forward_121
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---------------------ATGCGGCTGATGCTCTAACA---------------------------------------
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>reverse_2037
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------------------------------------CATCCATAATCGAATCCGCTGAC---------------------
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>forward_544
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--------------------------------------------TCCTCCTCCACCATCGATCC----------------
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>reverse_2722
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-CACCATGCTCATGTACTACGC----------------------------------------------------------
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>forward_587
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-------ACTCTGACCTCTGCTCGACC-----------------------------------------------------
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>reverse_2726
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-----ATGCTCATGTACTACGCCAACT-----------------------------------------------------
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>forward_899
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-------------------------------------------------------------------------------G
TCCACCGGCTGATTCCTTG-------------------------------------------------------------
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>reverse_3242
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-----------------------------------------CCTGTGTGGTGTGCTCGTTT-------------------
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---------------------------------------------------------------------------
