Multiple sequence alignment - TraesCS3D01G138400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G138400 chr3D 100.000 2573 0 0 1 2573 96677484 96680056 0.000000e+00 4752.0
1 TraesCS3D01G138400 chr3B 91.861 1929 70 28 703 2573 147872133 147874032 0.000000e+00 2612.0
2 TraesCS3D01G138400 chr3B 86.415 265 23 7 128 385 147811476 147811734 7.010000e-71 278.0
3 TraesCS3D01G138400 chr3B 80.000 90 16 2 381 468 727790753 727790664 5.940000e-07 65.8
4 TraesCS3D01G138400 chr3A 87.625 1899 131 50 745 2567 114567087 114568957 0.000000e+00 2109.0
5 TraesCS3D01G138400 chr3A 84.758 269 20 15 128 386 114545054 114545311 1.530000e-62 250.0
6 TraesCS3D01G138400 chr3A 81.579 228 16 9 523 728 114560870 114561093 5.700000e-37 165.0
7 TraesCS3D01G138400 chr3A 89.831 118 10 1 1 116 114544953 114545070 1.590000e-32 150.0
8 TraesCS3D01G138400 chr2D 78.744 207 22 4 1828 2020 590666001 590665803 4.500000e-23 119.0
9 TraesCS3D01G138400 chr5B 83.721 86 6 2 1828 1913 557524140 557524217 9.870000e-10 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G138400 chr3D 96677484 96680056 2572 False 4752 4752 100.000 1 2573 1 chr3D.!!$F1 2572
1 TraesCS3D01G138400 chr3B 147872133 147874032 1899 False 2612 2612 91.861 703 2573 1 chr3B.!!$F2 1870
2 TraesCS3D01G138400 chr3A 114567087 114568957 1870 False 2109 2109 87.625 745 2567 1 chr3A.!!$F2 1822

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
178 179 0.038526 GAGGACAATGTCGTGACGGT 60.039 55.0 13.64 0.0 32.65 4.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1808 1868 2.90791 GATGTGTTCATCTGGTGTGC 57.092 50.0 1.58 0.0 44.86 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.017232 CGAAGGTCGCAGAGTACAC 57.983 57.895 0.00 0.00 36.95 2.90
28 29 0.793478 CGAAGGTCGCAGAGTACACG 60.793 60.000 0.00 0.00 36.95 4.49
29 30 0.240411 GAAGGTCGCAGAGTACACGT 59.760 55.000 0.00 0.00 36.95 4.49
30 31 1.466167 GAAGGTCGCAGAGTACACGTA 59.534 52.381 0.00 0.00 36.95 3.57
31 32 1.747709 AGGTCGCAGAGTACACGTAT 58.252 50.000 0.00 0.00 36.95 3.06
32 33 2.089980 AGGTCGCAGAGTACACGTATT 58.910 47.619 0.00 0.00 36.95 1.89
33 34 3.273434 AGGTCGCAGAGTACACGTATTA 58.727 45.455 0.00 0.00 36.95 0.98
34 35 3.064545 AGGTCGCAGAGTACACGTATTAC 59.935 47.826 0.00 0.00 36.95 1.89
35 36 3.357897 GTCGCAGAGTACACGTATTACC 58.642 50.000 0.00 0.00 36.95 2.85
36 37 3.064545 GTCGCAGAGTACACGTATTACCT 59.935 47.826 0.00 0.00 36.95 3.08
37 38 3.310774 TCGCAGAGTACACGTATTACCTC 59.689 47.826 0.00 0.00 0.00 3.85
38 39 3.615614 GCAGAGTACACGTATTACCTCG 58.384 50.000 0.00 0.00 0.00 4.63
39 40 3.310774 GCAGAGTACACGTATTACCTCGA 59.689 47.826 0.00 0.00 0.00 4.04
40 41 4.552378 GCAGAGTACACGTATTACCTCGAG 60.552 50.000 5.13 5.13 0.00 4.04
41 42 4.025061 CAGAGTACACGTATTACCTCGAGG 60.025 50.000 30.11 30.11 42.17 4.63
42 43 4.122776 GAGTACACGTATTACCTCGAGGA 58.877 47.826 37.69 17.41 38.94 3.71
43 44 4.125703 AGTACACGTATTACCTCGAGGAG 58.874 47.826 37.69 20.76 38.94 3.69
53 54 2.125229 TCGAGGAGGACGAGGACG 60.125 66.667 0.00 0.00 45.75 4.79
54 55 2.125229 CGAGGAGGACGAGGACGA 60.125 66.667 0.00 0.00 42.66 4.20
55 56 2.462782 CGAGGAGGACGAGGACGAC 61.463 68.421 0.00 0.00 42.66 4.34
56 57 1.078285 GAGGAGGACGAGGACGACT 60.078 63.158 0.00 0.00 42.66 4.18
57 58 0.677414 GAGGAGGACGAGGACGACTT 60.677 60.000 0.00 0.00 42.66 3.01
58 59 0.677414 AGGAGGACGAGGACGACTTC 60.677 60.000 0.00 0.00 42.66 3.01
59 60 0.959372 GGAGGACGAGGACGACTTCA 60.959 60.000 0.00 0.00 40.42 3.02
60 61 0.448593 GAGGACGAGGACGACTTCAG 59.551 60.000 0.00 0.00 42.66 3.02
61 62 0.961358 AGGACGAGGACGACTTCAGG 60.961 60.000 0.00 0.00 42.66 3.86
62 63 0.959372 GGACGAGGACGACTTCAGGA 60.959 60.000 0.00 0.00 42.66 3.86
63 64 1.096416 GACGAGGACGACTTCAGGAT 58.904 55.000 0.00 0.00 42.66 3.24
64 65 2.286872 GACGAGGACGACTTCAGGATA 58.713 52.381 0.00 0.00 42.66 2.59
65 66 2.288458 GACGAGGACGACTTCAGGATAG 59.712 54.545 0.00 0.00 42.66 2.08
66 67 1.604755 CGAGGACGACTTCAGGATAGG 59.395 57.143 0.00 0.00 42.66 2.57
67 68 1.957877 GAGGACGACTTCAGGATAGGG 59.042 57.143 0.00 0.00 0.00 3.53
68 69 0.389757 GGACGACTTCAGGATAGGGC 59.610 60.000 0.00 0.00 0.00 5.19
69 70 1.404843 GACGACTTCAGGATAGGGCT 58.595 55.000 0.00 0.00 0.00 5.19
70 71 1.338655 GACGACTTCAGGATAGGGCTC 59.661 57.143 0.00 0.00 0.00 4.70
71 72 1.063567 ACGACTTCAGGATAGGGCTCT 60.064 52.381 0.00 0.00 0.00 4.09
72 73 2.175069 ACGACTTCAGGATAGGGCTCTA 59.825 50.000 0.00 0.00 0.00 2.43
73 74 2.554893 CGACTTCAGGATAGGGCTCTAC 59.445 54.545 0.00 0.00 0.00 2.59
74 75 3.749310 CGACTTCAGGATAGGGCTCTACT 60.749 52.174 0.00 0.00 0.00 2.57
75 76 3.824443 GACTTCAGGATAGGGCTCTACTC 59.176 52.174 0.00 0.00 0.00 2.59
76 77 3.205507 ACTTCAGGATAGGGCTCTACTCA 59.794 47.826 0.00 0.00 0.00 3.41
77 78 3.231207 TCAGGATAGGGCTCTACTCAC 57.769 52.381 0.00 0.00 0.00 3.51
78 79 2.786445 TCAGGATAGGGCTCTACTCACT 59.214 50.000 0.00 0.00 0.00 3.41
79 80 3.981375 TCAGGATAGGGCTCTACTCACTA 59.019 47.826 0.00 0.00 0.00 2.74
80 81 4.415846 TCAGGATAGGGCTCTACTCACTAA 59.584 45.833 0.00 0.00 0.00 2.24
81 82 5.075205 TCAGGATAGGGCTCTACTCACTAAT 59.925 44.000 0.00 0.00 0.00 1.73
82 83 5.417580 CAGGATAGGGCTCTACTCACTAATC 59.582 48.000 0.00 0.00 0.00 1.75
83 84 5.075205 AGGATAGGGCTCTACTCACTAATCA 59.925 44.000 0.00 0.00 0.00 2.57
84 85 5.417580 GGATAGGGCTCTACTCACTAATCAG 59.582 48.000 0.00 0.00 0.00 2.90
85 86 3.571590 AGGGCTCTACTCACTAATCAGG 58.428 50.000 0.00 0.00 0.00 3.86
86 87 2.630580 GGGCTCTACTCACTAATCAGGG 59.369 54.545 0.00 0.00 0.00 4.45
87 88 3.567397 GGCTCTACTCACTAATCAGGGA 58.433 50.000 0.00 0.00 31.73 4.20
97 98 5.982356 TCACTAATCAGGGAGTGAAATGAG 58.018 41.667 2.34 0.00 46.93 2.90
98 99 5.721480 TCACTAATCAGGGAGTGAAATGAGA 59.279 40.000 2.34 0.00 46.93 3.27
99 100 6.047870 CACTAATCAGGGAGTGAAATGAGAG 58.952 44.000 0.00 0.00 44.88 3.20
100 101 4.500499 AATCAGGGAGTGAAATGAGAGG 57.500 45.455 0.00 0.00 39.19 3.69
101 102 1.556911 TCAGGGAGTGAAATGAGAGGC 59.443 52.381 0.00 0.00 29.64 4.70
102 103 1.558756 CAGGGAGTGAAATGAGAGGCT 59.441 52.381 0.00 0.00 0.00 4.58
103 104 1.558756 AGGGAGTGAAATGAGAGGCTG 59.441 52.381 0.00 0.00 0.00 4.85
104 105 1.280421 GGGAGTGAAATGAGAGGCTGT 59.720 52.381 0.00 0.00 0.00 4.40
105 106 2.626840 GGAGTGAAATGAGAGGCTGTC 58.373 52.381 4.41 4.41 0.00 3.51
106 107 2.626840 GAGTGAAATGAGAGGCTGTCC 58.373 52.381 9.40 0.00 0.00 4.02
107 108 1.280421 AGTGAAATGAGAGGCTGTCCC 59.720 52.381 9.40 0.00 0.00 4.46
108 109 0.620556 TGAAATGAGAGGCTGTCCCC 59.379 55.000 9.40 0.00 0.00 4.81
109 110 0.462759 GAAATGAGAGGCTGTCCCCG 60.463 60.000 9.40 0.00 0.00 5.73
110 111 2.543067 AAATGAGAGGCTGTCCCCGC 62.543 60.000 9.40 0.00 0.00 6.13
117 118 4.699522 GCTGTCCCCGCCGTTCTT 62.700 66.667 0.00 0.00 0.00 2.52
118 119 2.032071 CTGTCCCCGCCGTTCTTT 59.968 61.111 0.00 0.00 0.00 2.52
119 120 1.599797 CTGTCCCCGCCGTTCTTTT 60.600 57.895 0.00 0.00 0.00 2.27
120 121 1.152922 TGTCCCCGCCGTTCTTTTT 60.153 52.632 0.00 0.00 0.00 1.94
144 145 2.186125 GGATGTCCCGTCCGTTCC 59.814 66.667 0.00 0.00 29.33 3.62
145 146 2.652095 GGATGTCCCGTCCGTTCCA 61.652 63.158 0.00 0.00 29.33 3.53
146 147 1.447314 GATGTCCCGTCCGTTCCAC 60.447 63.158 0.00 0.00 0.00 4.02
147 148 2.847435 GATGTCCCGTCCGTTCCACC 62.847 65.000 0.00 0.00 0.00 4.61
148 149 4.383861 GTCCCGTCCGTTCCACCC 62.384 72.222 0.00 0.00 0.00 4.61
149 150 4.626402 TCCCGTCCGTTCCACCCT 62.626 66.667 0.00 0.00 0.00 4.34
150 151 2.681064 CCCGTCCGTTCCACCCTA 60.681 66.667 0.00 0.00 0.00 3.53
151 152 2.062177 CCCGTCCGTTCCACCCTAT 61.062 63.158 0.00 0.00 0.00 2.57
152 153 1.143183 CCGTCCGTTCCACCCTATG 59.857 63.158 0.00 0.00 0.00 2.23
153 154 1.610554 CCGTCCGTTCCACCCTATGT 61.611 60.000 0.00 0.00 0.00 2.29
154 155 0.248289 CGTCCGTTCCACCCTATGTT 59.752 55.000 0.00 0.00 0.00 2.71
155 156 1.338389 CGTCCGTTCCACCCTATGTTT 60.338 52.381 0.00 0.00 0.00 2.83
156 157 2.081462 GTCCGTTCCACCCTATGTTTG 58.919 52.381 0.00 0.00 0.00 2.93
157 158 1.979308 TCCGTTCCACCCTATGTTTGA 59.021 47.619 0.00 0.00 0.00 2.69
158 159 2.081462 CCGTTCCACCCTATGTTTGAC 58.919 52.381 0.00 0.00 0.00 3.18
159 160 1.730064 CGTTCCACCCTATGTTTGACG 59.270 52.381 0.00 0.00 0.00 4.35
160 161 2.610976 CGTTCCACCCTATGTTTGACGA 60.611 50.000 0.00 0.00 0.00 4.20
161 162 3.000727 GTTCCACCCTATGTTTGACGAG 58.999 50.000 0.00 0.00 0.00 4.18
162 163 1.553248 TCCACCCTATGTTTGACGAGG 59.447 52.381 0.00 0.00 0.00 4.63
163 164 1.553248 CCACCCTATGTTTGACGAGGA 59.447 52.381 0.00 0.00 0.00 3.71
164 165 2.618053 CACCCTATGTTTGACGAGGAC 58.382 52.381 0.00 0.00 0.00 3.85
165 166 2.028476 CACCCTATGTTTGACGAGGACA 60.028 50.000 0.00 0.00 0.00 4.02
166 167 2.635915 ACCCTATGTTTGACGAGGACAA 59.364 45.455 0.00 0.00 0.00 3.18
167 168 3.263425 ACCCTATGTTTGACGAGGACAAT 59.737 43.478 0.00 0.00 0.00 2.71
168 169 3.623060 CCCTATGTTTGACGAGGACAATG 59.377 47.826 0.00 0.00 0.00 2.82
169 170 4.253685 CCTATGTTTGACGAGGACAATGT 58.746 43.478 0.00 0.00 0.00 2.71
170 171 4.330074 CCTATGTTTGACGAGGACAATGTC 59.670 45.833 4.51 4.51 0.00 3.06
171 172 2.131972 TGTTTGACGAGGACAATGTCG 58.868 47.619 7.35 0.00 42.04 4.35
176 177 2.349843 CGAGGACAATGTCGTGACG 58.650 57.895 13.64 7.93 32.65 4.35
177 178 1.071019 CGAGGACAATGTCGTGACGG 61.071 60.000 13.64 0.00 32.65 4.79
178 179 0.038526 GAGGACAATGTCGTGACGGT 60.039 55.000 13.64 0.00 32.65 4.83
179 180 0.391597 AGGACAATGTCGTGACGGTT 59.608 50.000 7.86 0.00 32.65 4.44
180 181 1.614903 AGGACAATGTCGTGACGGTTA 59.385 47.619 7.86 0.00 32.65 2.85
181 182 2.232941 AGGACAATGTCGTGACGGTTAT 59.767 45.455 7.86 0.00 32.65 1.89
182 183 3.444742 AGGACAATGTCGTGACGGTTATA 59.555 43.478 7.86 0.00 32.65 0.98
183 184 4.098960 AGGACAATGTCGTGACGGTTATAT 59.901 41.667 7.86 0.00 32.65 0.86
184 185 5.300034 AGGACAATGTCGTGACGGTTATATA 59.700 40.000 7.86 0.00 32.65 0.86
185 186 5.628193 GGACAATGTCGTGACGGTTATATAG 59.372 44.000 4.70 0.00 32.65 1.31
186 187 6.140303 ACAATGTCGTGACGGTTATATAGT 57.860 37.500 4.70 0.00 0.00 2.12
187 188 7.263100 ACAATGTCGTGACGGTTATATAGTA 57.737 36.000 4.70 0.00 0.00 1.82
188 189 7.879070 ACAATGTCGTGACGGTTATATAGTAT 58.121 34.615 4.70 0.00 0.00 2.12
189 190 8.355169 ACAATGTCGTGACGGTTATATAGTATT 58.645 33.333 4.70 0.00 0.00 1.89
190 191 9.188588 CAATGTCGTGACGGTTATATAGTATTT 57.811 33.333 4.70 0.00 0.00 1.40
191 192 9.754382 AATGTCGTGACGGTTATATAGTATTTT 57.246 29.630 4.70 0.00 0.00 1.82
192 193 9.754382 ATGTCGTGACGGTTATATAGTATTTTT 57.246 29.630 4.70 0.00 0.00 1.94
242 243 9.520204 AAATTATGTACAAGCATGTCATTAAGC 57.480 29.630 0.00 0.00 41.05 3.09
243 244 7.864108 TTATGTACAAGCATGTCATTAAGCT 57.136 32.000 0.00 0.00 41.05 3.74
244 245 8.956533 TTATGTACAAGCATGTCATTAAGCTA 57.043 30.769 0.00 0.00 41.05 3.32
245 246 7.864108 ATGTACAAGCATGTCATTAAGCTAA 57.136 32.000 0.00 0.00 41.05 3.09
246 247 7.864108 TGTACAAGCATGTCATTAAGCTAAT 57.136 32.000 0.00 0.00 41.05 1.73
247 248 8.956533 TGTACAAGCATGTCATTAAGCTAATA 57.043 30.769 0.00 0.00 41.05 0.98
248 249 8.826710 TGTACAAGCATGTCATTAAGCTAATAC 58.173 33.333 0.00 4.32 41.05 1.89
249 250 9.046296 GTACAAGCATGTCATTAAGCTAATACT 57.954 33.333 0.00 0.00 41.05 2.12
250 251 8.511604 ACAAGCATGTCATTAAGCTAATACTT 57.488 30.769 0.00 0.00 33.41 2.24
251 252 8.960591 ACAAGCATGTCATTAAGCTAATACTTT 58.039 29.630 0.00 0.00 33.41 2.66
252 253 9.793252 CAAGCATGTCATTAAGCTAATACTTTT 57.207 29.630 0.00 0.00 36.07 2.27
266 267 9.515226 AGCTAATACTTTTACATTTTCCACTGA 57.485 29.630 0.00 0.00 0.00 3.41
273 274 8.143835 ACTTTTACATTTTCCACTGAATTCTGG 58.856 33.333 15.76 11.57 0.00 3.86
274 275 7.595819 TTTACATTTTCCACTGAATTCTGGT 57.404 32.000 15.76 7.83 0.00 4.00
275 276 7.595819 TTACATTTTCCACTGAATTCTGGTT 57.404 32.000 15.76 0.00 0.00 3.67
276 277 8.698973 TTACATTTTCCACTGAATTCTGGTTA 57.301 30.769 15.76 3.15 0.00 2.85
277 278 7.219484 ACATTTTCCACTGAATTCTGGTTAG 57.781 36.000 15.76 3.07 0.00 2.34
278 279 6.777580 ACATTTTCCACTGAATTCTGGTTAGT 59.222 34.615 15.76 3.68 0.00 2.24
279 280 7.942341 ACATTTTCCACTGAATTCTGGTTAGTA 59.058 33.333 15.76 0.00 0.00 1.82
280 281 8.792633 CATTTTCCACTGAATTCTGGTTAGTAA 58.207 33.333 15.76 0.25 0.00 2.24
281 282 7.979444 TTTCCACTGAATTCTGGTTAGTAAG 57.021 36.000 15.76 0.35 0.00 2.34
282 283 5.488341 TCCACTGAATTCTGGTTAGTAAGC 58.512 41.667 15.76 5.11 0.00 3.09
283 284 5.248477 TCCACTGAATTCTGGTTAGTAAGCT 59.752 40.000 15.76 0.00 0.00 3.74
284 285 6.439375 TCCACTGAATTCTGGTTAGTAAGCTA 59.561 38.462 15.76 0.00 0.00 3.32
285 286 6.758886 CCACTGAATTCTGGTTAGTAAGCTAG 59.241 42.308 15.76 8.82 0.00 3.42
286 287 7.324178 CACTGAATTCTGGTTAGTAAGCTAGT 58.676 38.462 15.76 0.00 0.00 2.57
287 288 8.467598 CACTGAATTCTGGTTAGTAAGCTAGTA 58.532 37.037 15.76 4.16 0.00 1.82
288 289 8.468399 ACTGAATTCTGGTTAGTAAGCTAGTAC 58.532 37.037 15.76 0.00 0.00 2.73
289 290 7.478322 TGAATTCTGGTTAGTAAGCTAGTACG 58.522 38.462 12.98 0.00 0.00 3.67
290 291 7.121759 TGAATTCTGGTTAGTAAGCTAGTACGT 59.878 37.037 12.98 0.00 0.00 3.57
291 292 8.511604 AATTCTGGTTAGTAAGCTAGTACGTA 57.488 34.615 12.98 0.00 0.00 3.57
292 293 6.910536 TCTGGTTAGTAAGCTAGTACGTAC 57.089 41.667 18.10 18.10 0.00 3.67
293 294 6.644347 TCTGGTTAGTAAGCTAGTACGTACT 58.356 40.000 29.62 29.62 38.25 2.73
294 295 7.106239 TCTGGTTAGTAAGCTAGTACGTACTT 58.894 38.462 31.58 17.05 36.46 2.24
295 296 7.607991 TCTGGTTAGTAAGCTAGTACGTACTTT 59.392 37.037 31.58 21.82 36.46 2.66
296 297 7.752695 TGGTTAGTAAGCTAGTACGTACTTTC 58.247 38.462 31.58 22.18 36.46 2.62
297 298 7.607991 TGGTTAGTAAGCTAGTACGTACTTTCT 59.392 37.037 31.58 23.81 36.46 2.52
298 299 8.454894 GGTTAGTAAGCTAGTACGTACTTTCTT 58.545 37.037 31.58 29.83 36.46 2.52
299 300 9.271738 GTTAGTAAGCTAGTACGTACTTTCTTG 57.728 37.037 31.13 20.41 36.46 3.02
300 301 7.678947 AGTAAGCTAGTACGTACTTTCTTGA 57.321 36.000 31.13 20.68 37.73 3.02
301 302 8.103948 AGTAAGCTAGTACGTACTTTCTTGAA 57.896 34.615 31.13 20.08 37.73 2.69
302 303 8.738106 AGTAAGCTAGTACGTACTTTCTTGAAT 58.262 33.333 31.13 21.47 37.73 2.57
303 304 9.351570 GTAAGCTAGTACGTACTTTCTTGAATT 57.648 33.333 31.13 19.90 37.73 2.17
304 305 8.463456 AAGCTAGTACGTACTTTCTTGAATTC 57.537 34.615 31.58 8.24 37.73 2.17
305 306 7.828712 AGCTAGTACGTACTTTCTTGAATTCT 58.171 34.615 31.58 10.12 37.73 2.40
306 307 7.969508 AGCTAGTACGTACTTTCTTGAATTCTC 59.030 37.037 31.58 7.53 37.73 2.87
307 308 7.044836 GCTAGTACGTACTTTCTTGAATTCTCG 60.045 40.741 31.58 2.91 37.73 4.04
308 309 6.091437 AGTACGTACTTTCTTGAATTCTCGG 58.909 40.000 22.45 0.00 31.13 4.63
309 310 4.879598 ACGTACTTTCTTGAATTCTCGGT 58.120 39.130 7.05 0.62 0.00 4.69
310 311 4.684703 ACGTACTTTCTTGAATTCTCGGTG 59.315 41.667 7.05 0.00 0.00 4.94
311 312 4.921515 CGTACTTTCTTGAATTCTCGGTGA 59.078 41.667 7.05 0.00 0.00 4.02
312 313 5.164080 CGTACTTTCTTGAATTCTCGGTGAC 60.164 44.000 7.05 0.00 0.00 3.67
328 329 3.053455 GGTGACGTCATTGAGCTATAGC 58.947 50.000 23.12 17.33 42.49 2.97
329 330 3.490933 GGTGACGTCATTGAGCTATAGCA 60.491 47.826 26.07 6.60 45.16 3.49
330 331 3.487574 GTGACGTCATTGAGCTATAGCAC 59.512 47.826 26.07 20.24 45.16 4.40
331 332 3.381590 TGACGTCATTGAGCTATAGCACT 59.618 43.478 26.07 6.86 45.16 4.40
332 333 4.142160 TGACGTCATTGAGCTATAGCACTT 60.142 41.667 26.07 8.27 45.16 3.16
333 334 4.363999 ACGTCATTGAGCTATAGCACTTC 58.636 43.478 26.07 15.35 45.16 3.01
334 335 4.098654 ACGTCATTGAGCTATAGCACTTCT 59.901 41.667 26.07 5.26 45.16 2.85
335 336 4.679197 CGTCATTGAGCTATAGCACTTCTC 59.321 45.833 26.07 14.65 45.16 2.87
336 337 5.507149 CGTCATTGAGCTATAGCACTTCTCT 60.507 44.000 26.07 3.69 45.16 3.10
337 338 5.691305 GTCATTGAGCTATAGCACTTCTCTG 59.309 44.000 26.07 14.93 45.16 3.35
338 339 5.362143 TCATTGAGCTATAGCACTTCTCTGT 59.638 40.000 26.07 2.13 45.16 3.41
339 340 6.547510 TCATTGAGCTATAGCACTTCTCTGTA 59.452 38.462 26.07 5.69 45.16 2.74
340 341 5.759506 TGAGCTATAGCACTTCTCTGTAC 57.240 43.478 26.07 4.00 45.16 2.90
341 342 4.580995 TGAGCTATAGCACTTCTCTGTACC 59.419 45.833 26.07 0.00 45.16 3.34
342 343 3.892588 AGCTATAGCACTTCTCTGTACCC 59.107 47.826 26.07 0.00 45.16 3.69
343 344 3.304794 GCTATAGCACTTCTCTGTACCCG 60.305 52.174 20.01 0.00 41.59 5.28
344 345 0.815734 TAGCACTTCTCTGTACCCGC 59.184 55.000 0.00 0.00 0.00 6.13
345 346 1.185618 AGCACTTCTCTGTACCCGCA 61.186 55.000 0.00 0.00 0.00 5.69
346 347 0.320421 GCACTTCTCTGTACCCGCAA 60.320 55.000 0.00 0.00 0.00 4.85
347 348 1.876416 GCACTTCTCTGTACCCGCAAA 60.876 52.381 0.00 0.00 0.00 3.68
348 349 2.699954 CACTTCTCTGTACCCGCAAAT 58.300 47.619 0.00 0.00 0.00 2.32
349 350 2.673368 CACTTCTCTGTACCCGCAAATC 59.327 50.000 0.00 0.00 0.00 2.17
350 351 2.280628 CTTCTCTGTACCCGCAAATCC 58.719 52.381 0.00 0.00 0.00 3.01
351 352 0.539986 TCTCTGTACCCGCAAATCCC 59.460 55.000 0.00 0.00 0.00 3.85
352 353 0.251916 CTCTGTACCCGCAAATCCCA 59.748 55.000 0.00 0.00 0.00 4.37
353 354 0.251916 TCTGTACCCGCAAATCCCAG 59.748 55.000 0.00 0.00 0.00 4.45
354 355 0.251916 CTGTACCCGCAAATCCCAGA 59.748 55.000 0.00 0.00 0.00 3.86
355 356 0.693622 TGTACCCGCAAATCCCAGAA 59.306 50.000 0.00 0.00 0.00 3.02
356 357 1.339631 TGTACCCGCAAATCCCAGAAG 60.340 52.381 0.00 0.00 0.00 2.85
357 358 0.988832 TACCCGCAAATCCCAGAAGT 59.011 50.000 0.00 0.00 0.00 3.01
358 359 0.112412 ACCCGCAAATCCCAGAAGTT 59.888 50.000 0.00 0.00 0.00 2.66
359 360 1.256812 CCCGCAAATCCCAGAAGTTT 58.743 50.000 0.00 0.00 0.00 2.66
360 361 1.618343 CCCGCAAATCCCAGAAGTTTT 59.382 47.619 0.00 0.00 0.00 2.43
361 362 2.823154 CCCGCAAATCCCAGAAGTTTTA 59.177 45.455 0.00 0.00 0.00 1.52
362 363 3.257127 CCCGCAAATCCCAGAAGTTTTAA 59.743 43.478 0.00 0.00 0.00 1.52
363 364 4.262249 CCCGCAAATCCCAGAAGTTTTAAA 60.262 41.667 0.00 0.00 0.00 1.52
364 365 4.684242 CCGCAAATCCCAGAAGTTTTAAAC 59.316 41.667 0.00 0.00 0.00 2.01
365 366 4.381566 CGCAAATCCCAGAAGTTTTAAACG 59.618 41.667 1.95 0.00 36.23 3.60
366 367 5.286438 GCAAATCCCAGAAGTTTTAAACGT 58.714 37.500 1.95 0.00 36.23 3.99
367 368 5.401376 GCAAATCCCAGAAGTTTTAAACGTC 59.599 40.000 14.21 14.21 39.71 4.34
368 369 6.500041 CAAATCCCAGAAGTTTTAAACGTCA 58.500 36.000 21.58 5.52 41.49 4.35
369 370 5.941948 ATCCCAGAAGTTTTAAACGTCAG 57.058 39.130 21.58 15.20 41.49 3.51
370 371 4.773013 TCCCAGAAGTTTTAAACGTCAGT 58.227 39.130 21.58 3.71 41.49 3.41
371 372 5.187687 TCCCAGAAGTTTTAAACGTCAGTT 58.812 37.500 21.58 3.25 41.49 3.16
372 373 5.065474 TCCCAGAAGTTTTAAACGTCAGTTG 59.935 40.000 21.58 13.04 41.49 3.16
373 374 5.270853 CCAGAAGTTTTAAACGTCAGTTGG 58.729 41.667 21.58 16.98 41.49 3.77
374 375 5.065474 CCAGAAGTTTTAAACGTCAGTTGGA 59.935 40.000 21.58 0.00 41.49 3.53
375 376 5.963586 CAGAAGTTTTAAACGTCAGTTGGAC 59.036 40.000 21.58 0.00 41.49 4.02
376 377 4.888038 AGTTTTAAACGTCAGTTGGACC 57.112 40.909 1.95 0.00 43.95 4.46
377 378 3.628942 AGTTTTAAACGTCAGTTGGACCC 59.371 43.478 1.95 0.00 43.95 4.46
378 379 3.564053 TTTAAACGTCAGTTGGACCCT 57.436 42.857 0.00 0.00 43.95 4.34
379 380 4.686191 TTTAAACGTCAGTTGGACCCTA 57.314 40.909 0.00 0.00 43.95 3.53
380 381 4.686191 TTAAACGTCAGTTGGACCCTAA 57.314 40.909 0.00 0.00 43.95 2.69
381 382 2.833631 AACGTCAGTTGGACCCTAAG 57.166 50.000 0.00 0.00 43.95 2.18
382 383 0.974383 ACGTCAGTTGGACCCTAAGG 59.026 55.000 0.00 0.00 43.95 2.69
383 384 3.288609 AACGTCAGTTGGACCCTAAGGT 61.289 50.000 0.00 0.00 44.39 3.50
384 385 4.009352 AACGTCAGTTGGACCCTAAGGTA 61.009 47.826 0.00 0.00 42.71 3.08
385 386 5.304527 AACGTCAGTTGGACCCTAAGGTAT 61.305 45.833 0.00 0.00 42.71 2.73
386 387 6.749550 AACGTCAGTTGGACCCTAAGGTATT 61.750 44.000 0.00 0.00 42.71 1.89
387 388 8.472201 AACGTCAGTTGGACCCTAAGGTATTC 62.472 46.154 0.00 0.00 42.71 1.75
394 395 2.098618 CCCTAAGGTATTCCCTCCGT 57.901 55.000 0.00 0.00 45.47 4.69
395 396 1.969208 CCCTAAGGTATTCCCTCCGTC 59.031 57.143 0.00 0.00 45.47 4.79
396 397 1.969208 CCTAAGGTATTCCCTCCGTCC 59.031 57.143 0.00 0.00 45.47 4.79
397 398 1.969208 CTAAGGTATTCCCTCCGTCCC 59.031 57.143 0.00 0.00 45.47 4.46
398 399 0.043637 AAGGTATTCCCTCCGTCCCA 59.956 55.000 0.00 0.00 45.47 4.37
399 400 0.043637 AGGTATTCCCTCCGTCCCAA 59.956 55.000 0.00 0.00 40.71 4.12
400 401 0.913924 GGTATTCCCTCCGTCCCAAA 59.086 55.000 0.00 0.00 0.00 3.28
401 402 1.282738 GGTATTCCCTCCGTCCCAAAA 59.717 52.381 0.00 0.00 0.00 2.44
402 403 2.092049 GGTATTCCCTCCGTCCCAAAAT 60.092 50.000 0.00 0.00 0.00 1.82
403 404 3.136992 GGTATTCCCTCCGTCCCAAAATA 59.863 47.826 0.00 0.00 0.00 1.40
404 405 4.202535 GGTATTCCCTCCGTCCCAAAATAT 60.203 45.833 0.00 0.00 0.00 1.28
405 406 5.013391 GGTATTCCCTCCGTCCCAAAATATA 59.987 44.000 0.00 0.00 0.00 0.86
406 407 5.656549 ATTCCCTCCGTCCCAAAATATAA 57.343 39.130 0.00 0.00 0.00 0.98
407 408 4.699925 TCCCTCCGTCCCAAAATATAAG 57.300 45.455 0.00 0.00 0.00 1.73
408 409 4.300345 TCCCTCCGTCCCAAAATATAAGA 58.700 43.478 0.00 0.00 0.00 2.10
409 410 4.102054 TCCCTCCGTCCCAAAATATAAGAC 59.898 45.833 0.00 0.00 0.00 3.01
411 412 3.460103 TCCGTCCCAAAATATAAGACGC 58.540 45.455 5.39 0.00 46.66 5.19
412 413 3.133362 TCCGTCCCAAAATATAAGACGCT 59.867 43.478 5.39 0.00 46.66 5.07
413 414 4.341806 TCCGTCCCAAAATATAAGACGCTA 59.658 41.667 5.39 0.00 46.66 4.26
414 415 5.051816 CCGTCCCAAAATATAAGACGCTAA 58.948 41.667 5.39 0.00 46.66 3.09
415 416 5.176958 CCGTCCCAAAATATAAGACGCTAAG 59.823 44.000 5.39 0.00 46.66 2.18
416 417 5.981315 CGTCCCAAAATATAAGACGCTAAGA 59.019 40.000 0.00 0.00 43.07 2.10
417 418 6.074463 CGTCCCAAAATATAAGACGCTAAGAC 60.074 42.308 0.00 0.00 43.07 3.01
418 419 5.981315 TCCCAAAATATAAGACGCTAAGACG 59.019 40.000 0.00 0.00 39.50 4.18
419 420 5.333111 CCCAAAATATAAGACGCTAAGACGC 60.333 44.000 0.00 0.00 36.19 5.19
420 421 5.462398 CCAAAATATAAGACGCTAAGACGCT 59.538 40.000 0.00 0.00 36.19 5.07
421 422 6.639686 CCAAAATATAAGACGCTAAGACGCTA 59.360 38.462 0.00 0.00 36.19 4.26
422 423 7.328737 CCAAAATATAAGACGCTAAGACGCTAT 59.671 37.037 0.00 0.00 36.19 2.97
423 424 8.366666 CAAAATATAAGACGCTAAGACGCTATC 58.633 37.037 0.00 0.00 36.19 2.08
424 425 6.738832 ATATAAGACGCTAAGACGCTATCA 57.261 37.500 0.00 0.00 36.19 2.15
425 426 3.992260 AAGACGCTAAGACGCTATCAT 57.008 42.857 0.00 0.00 36.19 2.45
426 427 3.275400 AGACGCTAAGACGCTATCATG 57.725 47.619 0.00 0.00 36.19 3.07
427 428 2.879026 AGACGCTAAGACGCTATCATGA 59.121 45.455 0.00 0.00 36.19 3.07
428 429 3.504134 AGACGCTAAGACGCTATCATGAT 59.496 43.478 13.81 13.81 36.19 2.45
429 430 4.695928 AGACGCTAAGACGCTATCATGATA 59.304 41.667 14.64 14.64 36.19 2.15
430 431 5.355630 AGACGCTAAGACGCTATCATGATAT 59.644 40.000 15.71 1.37 36.19 1.63
431 432 5.574082 ACGCTAAGACGCTATCATGATATC 58.426 41.667 15.71 10.86 36.19 1.63
432 433 5.123979 ACGCTAAGACGCTATCATGATATCA 59.876 40.000 15.71 8.10 36.19 2.15
433 434 6.030228 CGCTAAGACGCTATCATGATATCAA 58.970 40.000 15.71 0.00 0.00 2.57
434 435 6.528072 CGCTAAGACGCTATCATGATATCAAA 59.472 38.462 15.71 1.38 0.00 2.69
435 436 7.062255 CGCTAAGACGCTATCATGATATCAAAA 59.938 37.037 15.71 0.99 0.00 2.44
436 437 8.712363 GCTAAGACGCTATCATGATATCAAAAA 58.288 33.333 15.71 0.00 0.00 1.94
458 459 8.421249 AAAAACATCTTACATTTCAGGATGGA 57.579 30.769 0.00 0.00 38.33 3.41
459 460 7.636150 AAACATCTTACATTTCAGGATGGAG 57.364 36.000 0.00 0.00 38.33 3.86
460 461 5.688807 ACATCTTACATTTCAGGATGGAGG 58.311 41.667 0.00 0.00 38.33 4.30
461 462 4.778213 TCTTACATTTCAGGATGGAGGG 57.222 45.455 0.00 0.00 36.16 4.30
462 463 4.370776 TCTTACATTTCAGGATGGAGGGA 58.629 43.478 0.00 0.00 36.16 4.20
463 464 4.410228 TCTTACATTTCAGGATGGAGGGAG 59.590 45.833 0.00 0.00 36.16 4.30
464 465 2.566746 ACATTTCAGGATGGAGGGAGT 58.433 47.619 0.00 0.00 36.16 3.85
465 466 3.736094 ACATTTCAGGATGGAGGGAGTA 58.264 45.455 0.00 0.00 36.16 2.59
466 467 3.456277 ACATTTCAGGATGGAGGGAGTAC 59.544 47.826 0.00 0.00 36.16 2.73
467 468 3.491766 TTTCAGGATGGAGGGAGTACT 57.508 47.619 0.00 0.00 36.16 2.73
468 469 4.620086 TTTCAGGATGGAGGGAGTACTA 57.380 45.455 0.00 0.00 36.16 1.82
469 470 4.620086 TTCAGGATGGAGGGAGTACTAA 57.380 45.455 0.00 0.00 36.16 2.24
470 471 4.620086 TCAGGATGGAGGGAGTACTAAA 57.380 45.455 0.00 0.00 36.16 1.85
471 472 5.157770 TCAGGATGGAGGGAGTACTAAAT 57.842 43.478 0.00 0.00 36.16 1.40
472 473 4.901849 TCAGGATGGAGGGAGTACTAAATG 59.098 45.833 0.00 0.00 36.16 2.32
473 474 4.901849 CAGGATGGAGGGAGTACTAAATGA 59.098 45.833 0.00 0.00 0.00 2.57
474 475 4.902448 AGGATGGAGGGAGTACTAAATGAC 59.098 45.833 0.00 0.00 0.00 3.06
475 476 4.902448 GGATGGAGGGAGTACTAAATGACT 59.098 45.833 0.00 0.00 0.00 3.41
476 477 6.075984 GGATGGAGGGAGTACTAAATGACTA 58.924 44.000 0.00 0.00 0.00 2.59
477 478 6.726764 GGATGGAGGGAGTACTAAATGACTAT 59.273 42.308 0.00 0.00 0.00 2.12
478 479 7.894364 GGATGGAGGGAGTACTAAATGACTATA 59.106 40.741 0.00 0.00 0.00 1.31
479 480 9.310449 GATGGAGGGAGTACTAAATGACTATAA 57.690 37.037 0.00 0.00 0.00 0.98
480 481 9.845214 ATGGAGGGAGTACTAAATGACTATAAT 57.155 33.333 0.00 0.00 0.00 1.28
481 482 9.670442 TGGAGGGAGTACTAAATGACTATAATT 57.330 33.333 0.00 0.00 0.00 1.40
482 483 9.930693 GGAGGGAGTACTAAATGACTATAATTG 57.069 37.037 0.00 0.00 0.00 2.32
483 484 9.425577 GAGGGAGTACTAAATGACTATAATTGC 57.574 37.037 0.00 0.00 0.00 3.56
484 485 9.160412 AGGGAGTACTAAATGACTATAATTGCT 57.840 33.333 0.00 0.00 0.00 3.91
485 486 9.780186 GGGAGTACTAAATGACTATAATTGCTT 57.220 33.333 0.00 0.00 0.00 3.91
528 529 7.504924 TTTTTAAAGATGTCGTGACCAATCT 57.495 32.000 0.00 0.00 0.00 2.40
529 530 7.504924 TTTTAAAGATGTCGTGACCAATCTT 57.495 32.000 8.84 8.84 40.27 2.40
530 531 6.721571 TTAAAGATGTCGTGACCAATCTTC 57.278 37.500 13.02 0.00 38.18 2.87
531 532 2.881074 AGATGTCGTGACCAATCTTCG 58.119 47.619 0.00 0.00 0.00 3.79
532 533 1.927174 GATGTCGTGACCAATCTTCGG 59.073 52.381 0.00 0.00 0.00 4.30
533 534 0.963225 TGTCGTGACCAATCTTCGGA 59.037 50.000 0.00 0.00 0.00 4.55
534 535 1.548719 TGTCGTGACCAATCTTCGGAT 59.451 47.619 0.00 0.00 36.00 4.18
535 536 2.028476 TGTCGTGACCAATCTTCGGATT 60.028 45.455 0.00 0.00 44.62 3.01
536 537 3.000727 GTCGTGACCAATCTTCGGATTT 58.999 45.455 0.00 0.00 42.18 2.17
537 538 4.178540 GTCGTGACCAATCTTCGGATTTA 58.821 43.478 0.00 0.00 42.18 1.40
538 539 4.628333 GTCGTGACCAATCTTCGGATTTAA 59.372 41.667 0.00 0.00 42.18 1.52
539 540 5.121142 GTCGTGACCAATCTTCGGATTTAAA 59.879 40.000 0.00 0.00 42.18 1.52
540 541 5.701750 TCGTGACCAATCTTCGGATTTAAAA 59.298 36.000 0.00 0.00 42.18 1.52
541 542 6.373216 TCGTGACCAATCTTCGGATTTAAAAT 59.627 34.615 0.00 0.00 42.18 1.82
542 543 7.027161 CGTGACCAATCTTCGGATTTAAAATT 58.973 34.615 0.00 0.00 42.18 1.82
543 544 7.540745 CGTGACCAATCTTCGGATTTAAAATTT 59.459 33.333 0.00 0.00 42.18 1.82
544 545 8.860128 GTGACCAATCTTCGGATTTAAAATTTC 58.140 33.333 0.00 0.00 42.18 2.17
545 546 8.580720 TGACCAATCTTCGGATTTAAAATTTCA 58.419 29.630 0.00 0.00 42.18 2.69
546 547 9.418045 GACCAATCTTCGGATTTAAAATTTCAA 57.582 29.630 0.00 0.00 42.18 2.69
547 548 9.771534 ACCAATCTTCGGATTTAAAATTTCAAA 57.228 25.926 0.00 0.00 42.18 2.69
552 553 9.255304 TCTTCGGATTTAAAATTTCAAAACTGG 57.745 29.630 3.75 0.00 0.00 4.00
553 554 8.950208 TTCGGATTTAAAATTTCAAAACTGGT 57.050 26.923 3.75 0.00 0.00 4.00
555 556 9.685828 TCGGATTTAAAATTTCAAAACTGGTAG 57.314 29.630 3.75 0.00 0.00 3.18
556 557 8.432359 CGGATTTAAAATTTCAAAACTGGTAGC 58.568 33.333 0.00 0.00 0.00 3.58
557 558 9.267084 GGATTTAAAATTTCAAAACTGGTAGCA 57.733 29.630 0.00 0.00 0.00 3.49
559 560 9.830975 ATTTAAAATTTCAAAACTGGTAGCAGT 57.169 25.926 21.62 21.62 36.92 4.40
561 562 9.959749 TTAAAATTTCAAAACTGGTAGCAGTAG 57.040 29.630 26.75 18.89 34.56 2.57
562 563 7.817418 AAATTTCAAAACTGGTAGCAGTAGA 57.183 32.000 26.75 20.63 34.56 2.59
563 564 8.409358 AAATTTCAAAACTGGTAGCAGTAGAT 57.591 30.769 26.75 13.92 34.56 1.98
564 565 9.515226 AAATTTCAAAACTGGTAGCAGTAGATA 57.485 29.630 26.75 18.62 34.56 1.98
565 566 9.686683 AATTTCAAAACTGGTAGCAGTAGATAT 57.313 29.630 26.75 19.74 34.56 1.63
569 570 9.982651 TCAAAACTGGTAGCAGTAGATATAATC 57.017 33.333 26.75 0.00 34.56 1.75
570 571 9.988815 CAAAACTGGTAGCAGTAGATATAATCT 57.011 33.333 26.75 5.42 43.33 2.40
572 573 7.948034 ACTGGTAGCAGTAGATATAATCTCC 57.052 40.000 25.49 0.00 40.76 3.71
573 574 7.704727 ACTGGTAGCAGTAGATATAATCTCCT 58.295 38.462 25.49 0.00 40.76 3.69
574 575 7.613801 ACTGGTAGCAGTAGATATAATCTCCTG 59.386 40.741 25.49 5.41 43.74 3.86
575 576 6.892456 TGGTAGCAGTAGATATAATCTCCTGG 59.108 42.308 10.38 0.00 41.90 4.45
576 577 6.322712 GGTAGCAGTAGATATAATCTCCTGGG 59.677 46.154 10.38 0.00 41.90 4.45
577 578 5.909760 AGCAGTAGATATAATCTCCTGGGT 58.090 41.667 10.38 0.00 41.90 4.51
578 579 6.326970 AGCAGTAGATATAATCTCCTGGGTT 58.673 40.000 10.38 0.00 41.90 4.11
579 580 6.439058 AGCAGTAGATATAATCTCCTGGGTTC 59.561 42.308 10.38 0.00 41.90 3.62
580 581 6.439058 GCAGTAGATATAATCTCCTGGGTTCT 59.561 42.308 10.38 0.00 41.90 3.01
581 582 7.038658 GCAGTAGATATAATCTCCTGGGTTCTT 60.039 40.741 10.38 0.00 41.90 2.52
582 583 8.875168 CAGTAGATATAATCTCCTGGGTTCTTT 58.125 37.037 2.47 0.00 39.05 2.52
583 584 9.453830 AGTAGATATAATCTCCTGGGTTCTTTT 57.546 33.333 0.00 0.00 40.76 2.27
584 585 9.713713 GTAGATATAATCTCCTGGGTTCTTTTC 57.286 37.037 0.00 0.00 40.76 2.29
585 586 8.337118 AGATATAATCTCCTGGGTTCTTTTCA 57.663 34.615 0.00 0.00 33.42 2.69
586 587 8.435982 AGATATAATCTCCTGGGTTCTTTTCAG 58.564 37.037 0.00 0.00 33.42 3.02
587 588 6.642733 ATAATCTCCTGGGTTCTTTTCAGA 57.357 37.500 0.00 0.00 0.00 3.27
588 589 3.771577 TCTCCTGGGTTCTTTTCAGAC 57.228 47.619 0.00 0.00 0.00 3.51
589 590 3.045634 TCTCCTGGGTTCTTTTCAGACA 58.954 45.455 0.00 0.00 0.00 3.41
590 591 3.652869 TCTCCTGGGTTCTTTTCAGACAT 59.347 43.478 0.00 0.00 0.00 3.06
591 592 3.754965 TCCTGGGTTCTTTTCAGACATG 58.245 45.455 0.00 0.00 0.00 3.21
592 593 2.229784 CCTGGGTTCTTTTCAGACATGC 59.770 50.000 0.00 0.00 0.00 4.06
593 594 3.152341 CTGGGTTCTTTTCAGACATGCT 58.848 45.455 0.00 0.00 0.00 3.79
594 595 2.886523 TGGGTTCTTTTCAGACATGCTG 59.113 45.455 9.94 9.94 46.31 4.41
603 604 2.556286 AGACATGCTGACTCGACGA 58.444 52.632 0.00 0.00 0.00 4.20
604 605 0.169230 AGACATGCTGACTCGACGAC 59.831 55.000 0.00 0.00 0.00 4.34
605 606 0.169230 GACATGCTGACTCGACGACT 59.831 55.000 0.00 0.00 0.00 4.18
606 607 0.598562 ACATGCTGACTCGACGACTT 59.401 50.000 0.00 0.00 0.00 3.01
607 608 1.000163 ACATGCTGACTCGACGACTTT 60.000 47.619 0.00 0.00 0.00 2.66
608 609 2.061773 CATGCTGACTCGACGACTTTT 58.938 47.619 0.00 0.00 0.00 2.27
609 610 1.767289 TGCTGACTCGACGACTTTTC 58.233 50.000 0.00 0.00 0.00 2.29
610 611 1.337071 TGCTGACTCGACGACTTTTCT 59.663 47.619 0.00 0.00 0.00 2.52
611 612 1.980156 GCTGACTCGACGACTTTTCTC 59.020 52.381 0.00 0.00 0.00 2.87
612 613 2.350964 GCTGACTCGACGACTTTTCTCT 60.351 50.000 0.00 0.00 0.00 3.10
613 614 3.120269 GCTGACTCGACGACTTTTCTCTA 60.120 47.826 0.00 0.00 0.00 2.43
614 615 4.437659 GCTGACTCGACGACTTTTCTCTAT 60.438 45.833 0.00 0.00 0.00 1.98
615 616 5.220624 GCTGACTCGACGACTTTTCTCTATA 60.221 44.000 0.00 0.00 0.00 1.31
616 617 6.512091 GCTGACTCGACGACTTTTCTCTATAT 60.512 42.308 0.00 0.00 0.00 0.86
617 618 7.307278 GCTGACTCGACGACTTTTCTCTATATA 60.307 40.741 0.00 0.00 0.00 0.86
618 619 8.604640 TGACTCGACGACTTTTCTCTATATAT 57.395 34.615 0.00 0.00 0.00 0.86
619 620 9.702494 TGACTCGACGACTTTTCTCTATATATA 57.298 33.333 0.00 0.00 0.00 0.86
620 621 9.956797 GACTCGACGACTTTTCTCTATATATAC 57.043 37.037 0.00 0.00 0.00 1.47
621 622 8.646356 ACTCGACGACTTTTCTCTATATATACG 58.354 37.037 0.00 0.00 0.00 3.06
622 623 8.748380 TCGACGACTTTTCTCTATATATACGA 57.252 34.615 0.00 0.00 0.00 3.43
623 624 9.363763 TCGACGACTTTTCTCTATATATACGAT 57.636 33.333 0.00 0.00 0.00 3.73
624 625 9.411169 CGACGACTTTTCTCTATATATACGATG 57.589 37.037 0.00 0.00 0.00 3.84
625 626 9.705471 GACGACTTTTCTCTATATATACGATGG 57.295 37.037 0.00 0.00 0.00 3.51
626 627 9.228949 ACGACTTTTCTCTATATATACGATGGT 57.771 33.333 0.00 0.00 0.00 3.55
641 642 5.164606 ACGATGGTACGAAAAATATTGGC 57.835 39.130 0.00 0.00 37.03 4.52
642 643 4.636648 ACGATGGTACGAAAAATATTGGCA 59.363 37.500 0.00 0.00 37.03 4.92
643 644 4.967575 CGATGGTACGAAAAATATTGGCAC 59.032 41.667 0.00 0.00 35.09 5.01
644 645 5.447954 CGATGGTACGAAAAATATTGGCACA 60.448 40.000 0.00 0.00 35.09 4.57
645 646 5.906113 TGGTACGAAAAATATTGGCACAT 57.094 34.783 0.00 0.00 39.30 3.21
646 647 5.645624 TGGTACGAAAAATATTGGCACATG 58.354 37.500 0.00 0.00 39.30 3.21
647 648 5.416013 TGGTACGAAAAATATTGGCACATGA 59.584 36.000 0.00 0.00 39.30 3.07
648 649 6.096141 TGGTACGAAAAATATTGGCACATGAT 59.904 34.615 0.00 0.00 39.30 2.45
649 650 6.417635 GGTACGAAAAATATTGGCACATGATG 59.582 38.462 0.00 0.00 39.30 3.07
663 664 3.621953 TGATGCATCACGTCAACCA 57.378 47.368 25.42 0.00 41.42 3.67
664 665 1.889545 TGATGCATCACGTCAACCAA 58.110 45.000 25.42 0.00 41.42 3.67
665 666 1.805943 TGATGCATCACGTCAACCAAG 59.194 47.619 25.42 0.00 41.42 3.61
666 667 1.131126 GATGCATCACGTCAACCAAGG 59.869 52.381 21.92 0.00 34.16 3.61
667 668 1.210155 GCATCACGTCAACCAAGGC 59.790 57.895 0.00 0.00 0.00 4.35
668 669 1.875963 CATCACGTCAACCAAGGCC 59.124 57.895 0.00 0.00 0.00 5.19
669 670 0.888736 CATCACGTCAACCAAGGCCA 60.889 55.000 5.01 0.00 0.00 5.36
670 671 0.889186 ATCACGTCAACCAAGGCCAC 60.889 55.000 5.01 0.00 0.00 5.01
671 672 2.203294 ACGTCAACCAAGGCCACC 60.203 61.111 5.01 0.00 0.00 4.61
672 673 3.353836 CGTCAACCAAGGCCACCG 61.354 66.667 5.01 0.00 0.00 4.94
673 674 2.203294 GTCAACCAAGGCCACCGT 60.203 61.111 5.01 0.00 0.00 4.83
674 675 1.071814 GTCAACCAAGGCCACCGTA 59.928 57.895 5.01 0.00 0.00 4.02
675 676 1.071814 TCAACCAAGGCCACCGTAC 59.928 57.895 5.01 0.00 0.00 3.67
676 677 1.228003 CAACCAAGGCCACCGTACA 60.228 57.895 5.01 0.00 0.00 2.90
677 678 0.820074 CAACCAAGGCCACCGTACAA 60.820 55.000 5.01 0.00 0.00 2.41
678 679 0.106619 AACCAAGGCCACCGTACAAA 60.107 50.000 5.01 0.00 0.00 2.83
679 680 0.111639 ACCAAGGCCACCGTACAAAT 59.888 50.000 5.01 0.00 0.00 2.32
680 681 1.351683 ACCAAGGCCACCGTACAAATA 59.648 47.619 5.01 0.00 0.00 1.40
681 682 2.014128 CCAAGGCCACCGTACAAATAG 58.986 52.381 5.01 0.00 0.00 1.73
682 683 2.355310 CCAAGGCCACCGTACAAATAGA 60.355 50.000 5.01 0.00 0.00 1.98
683 684 2.676342 CAAGGCCACCGTACAAATAGAC 59.324 50.000 5.01 0.00 0.00 2.59
684 685 1.903860 AGGCCACCGTACAAATAGACA 59.096 47.619 5.01 0.00 0.00 3.41
685 686 2.004733 GGCCACCGTACAAATAGACAC 58.995 52.381 0.00 0.00 0.00 3.67
686 687 2.354403 GGCCACCGTACAAATAGACACT 60.354 50.000 0.00 0.00 0.00 3.55
687 688 2.928116 GCCACCGTACAAATAGACACTC 59.072 50.000 0.00 0.00 0.00 3.51
688 689 3.176708 CCACCGTACAAATAGACACTCG 58.823 50.000 0.00 0.00 0.00 4.18
689 690 3.119743 CCACCGTACAAATAGACACTCGA 60.120 47.826 0.00 0.00 0.00 4.04
690 691 4.478699 CACCGTACAAATAGACACTCGAA 58.521 43.478 0.00 0.00 0.00 3.71
691 692 4.919168 CACCGTACAAATAGACACTCGAAA 59.081 41.667 0.00 0.00 0.00 3.46
692 693 5.575606 CACCGTACAAATAGACACTCGAAAT 59.424 40.000 0.00 0.00 0.00 2.17
693 694 5.803967 ACCGTACAAATAGACACTCGAAATC 59.196 40.000 0.00 0.00 0.00 2.17
694 695 6.034591 CCGTACAAATAGACACTCGAAATCT 58.965 40.000 0.00 0.00 0.00 2.40
695 696 6.530534 CCGTACAAATAGACACTCGAAATCTT 59.469 38.462 0.00 0.00 0.00 2.40
696 697 7.699391 CCGTACAAATAGACACTCGAAATCTTA 59.301 37.037 0.00 0.00 0.00 2.10
697 698 9.069078 CGTACAAATAGACACTCGAAATCTTAA 57.931 33.333 0.00 0.00 0.00 1.85
709 710 8.824781 CACTCGAAATCTTAATTCTGATCACAT 58.175 33.333 0.00 0.00 0.00 3.21
785 801 4.158579 CACGATAGGCCAGAAGATATGCTA 59.841 45.833 5.01 0.00 43.77 3.49
926 942 2.879103 TTCCATTGTCTCCCAAGTCC 57.121 50.000 0.00 0.00 36.25 3.85
928 944 0.995024 CCATTGTCTCCCAAGTCCCT 59.005 55.000 0.00 0.00 36.25 4.20
937 953 0.905357 CCCAAGTCCCTACAGACCAG 59.095 60.000 0.00 0.00 37.49 4.00
980 1000 1.757118 CTACCCATCTTCTTCCTCGCA 59.243 52.381 0.00 0.00 0.00 5.10
1216 1236 3.255379 GCGTCATCGACCGCTTCC 61.255 66.667 16.03 0.00 39.71 3.46
1360 1380 4.056125 CGCTGCTCCTCCACGACA 62.056 66.667 0.00 0.00 0.00 4.35
1365 1385 3.007973 GCTCCTCCACGACACCCTC 62.008 68.421 0.00 0.00 0.00 4.30
1475 1495 0.457853 GACTGCATCGCGTACAGGAA 60.458 55.000 22.65 0.00 35.70 3.36
1581 1635 5.471456 GCACCAGCAGCTATAAATAAGACAT 59.529 40.000 0.00 0.00 41.58 3.06
1584 1638 7.657354 CACCAGCAGCTATAAATAAGACATACA 59.343 37.037 0.00 0.00 0.00 2.29
1605 1659 0.533032 CCTCTGGTCGGAAGTCCTTC 59.467 60.000 0.00 0.00 40.15 3.46
1767 1826 5.163457 TGGAAGGGACAATCTTTGTTGAAAC 60.163 40.000 0.00 0.00 45.52 2.78
1771 1831 4.502645 GGGACAATCTTTGTTGAAACGTTG 59.497 41.667 0.00 0.00 45.52 4.10
1815 1880 1.820010 ATCGAGCTCACAGCACACCA 61.820 55.000 15.40 0.00 45.56 4.17
1830 1895 3.140623 CACACCAGATGAACACATCACA 58.859 45.455 11.79 0.00 41.93 3.58
1831 1896 3.754850 CACACCAGATGAACACATCACAT 59.245 43.478 11.79 0.00 41.93 3.21
1832 1897 4.005650 ACACCAGATGAACACATCACATC 58.994 43.478 11.79 0.00 41.93 3.06
1833 1898 4.004982 CACCAGATGAACACATCACATCA 58.995 43.478 11.79 0.00 41.93 3.07
1834 1899 4.005650 ACCAGATGAACACATCACATCAC 58.994 43.478 11.79 0.00 41.93 3.06
1844 1909 5.122519 ACACATCACATCACAACACTAACA 58.877 37.500 0.00 0.00 0.00 2.41
1915 1980 0.687354 ACTGAAGGGTGCCACACTAG 59.313 55.000 0.00 0.00 27.20 2.57
1917 1982 0.396435 TGAAGGGTGCCACACTAGTG 59.604 55.000 21.44 21.44 45.47 2.74
1918 1983 0.396811 GAAGGGTGCCACACTAGTGT 59.603 55.000 22.95 22.95 44.39 3.55
1976 2055 3.849911 ACCTGAAGATCACACATACACG 58.150 45.455 0.00 0.00 0.00 4.49
1983 2070 2.605837 TCACACATACACGTGGTGTT 57.394 45.000 21.56 12.88 45.08 3.32
1986 2073 4.239304 TCACACATACACGTGGTGTTATC 58.761 43.478 21.56 0.00 45.08 1.75
1987 2074 4.021807 TCACACATACACGTGGTGTTATCT 60.022 41.667 21.56 1.73 45.08 1.98
1993 2080 4.119442 ACACGTGGTGTTATCTATGTCC 57.881 45.455 21.57 0.00 45.08 4.02
2084 2171 5.380043 ACTCAAATCAACTGTCTGAACCAT 58.620 37.500 0.00 0.00 0.00 3.55
2099 2186 6.259608 GTCTGAACCATAGGAACAATGATGAG 59.740 42.308 0.00 0.00 0.00 2.90
2194 2281 0.316204 CTTGGTTTGCCTGCCAGAAG 59.684 55.000 0.00 0.00 36.00 2.85
2199 2286 4.704833 TGCCTGCCAGAAGACGCC 62.705 66.667 0.00 0.00 0.00 5.68
2200 2287 4.704833 GCCTGCCAGAAGACGCCA 62.705 66.667 0.00 0.00 0.00 5.69
2201 2288 2.435586 CCTGCCAGAAGACGCCAG 60.436 66.667 0.00 0.00 0.00 4.85
2202 2289 2.659016 CTGCCAGAAGACGCCAGA 59.341 61.111 0.00 0.00 0.00 3.86
2203 2290 1.447489 CTGCCAGAAGACGCCAGAG 60.447 63.158 0.00 0.00 0.00 3.35
2204 2291 2.164865 CTGCCAGAAGACGCCAGAGT 62.165 60.000 0.00 0.00 0.00 3.24
2276 2374 3.030291 TGCAACAATGGAGAAAACCTGT 58.970 40.909 0.00 0.00 0.00 4.00
2288 2386 5.124936 GGAGAAAACCTGTGTGTTTAGTTGT 59.875 40.000 0.00 0.00 37.46 3.32
2296 2394 3.062909 TGTGTGTTTAGTTGTGCGAAGAC 59.937 43.478 0.00 0.00 0.00 3.01
2471 2569 8.858003 TTATCATAATCTTCAGAGTGAACGAC 57.142 34.615 0.00 0.00 32.21 4.34
2524 2624 8.336801 ACTTAATGTGTTTAGGGATCAGAAAC 57.663 34.615 0.00 2.43 34.37 2.78
2569 2669 8.462016 CCCATAACTGTCCTCAGAAAATAAAAG 58.538 37.037 2.17 0.00 43.76 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 0.793478 CGTGTACTCTGCGACCTTCG 60.793 60.000 0.00 0.00 43.89 3.79
10 11 0.240411 ACGTGTACTCTGCGACCTTC 59.760 55.000 0.00 0.00 0.00 3.46
11 12 1.527034 TACGTGTACTCTGCGACCTT 58.473 50.000 0.00 0.00 0.00 3.50
12 13 1.747709 ATACGTGTACTCTGCGACCT 58.252 50.000 0.00 0.00 0.00 3.85
13 14 2.556534 AATACGTGTACTCTGCGACC 57.443 50.000 0.00 0.00 0.00 4.79
14 15 3.064545 AGGTAATACGTGTACTCTGCGAC 59.935 47.826 0.00 0.00 0.00 5.19
15 16 3.273434 AGGTAATACGTGTACTCTGCGA 58.727 45.455 0.00 0.00 0.00 5.10
16 17 3.615614 GAGGTAATACGTGTACTCTGCG 58.384 50.000 0.00 0.00 0.00 5.18
17 18 3.310774 TCGAGGTAATACGTGTACTCTGC 59.689 47.826 0.00 0.00 0.00 4.26
18 19 4.025061 CCTCGAGGTAATACGTGTACTCTG 60.025 50.000 24.04 0.00 0.00 3.35
19 20 4.125703 CCTCGAGGTAATACGTGTACTCT 58.874 47.826 24.04 0.59 0.00 3.24
20 21 4.122776 TCCTCGAGGTAATACGTGTACTC 58.877 47.826 30.17 0.00 36.34 2.59
21 22 4.125703 CTCCTCGAGGTAATACGTGTACT 58.874 47.826 30.17 0.00 36.34 2.73
22 23 3.249559 CCTCCTCGAGGTAATACGTGTAC 59.750 52.174 30.17 0.00 44.25 2.90
23 24 3.470709 CCTCCTCGAGGTAATACGTGTA 58.529 50.000 30.17 6.68 44.25 2.90
24 25 2.295885 CCTCCTCGAGGTAATACGTGT 58.704 52.381 30.17 0.00 44.25 4.49
36 37 2.125229 CGTCCTCGTCCTCCTCGA 60.125 66.667 0.00 0.00 35.96 4.04
37 38 2.125229 TCGTCCTCGTCCTCCTCG 60.125 66.667 0.00 0.00 38.33 4.63
38 39 0.677414 AAGTCGTCCTCGTCCTCCTC 60.677 60.000 0.00 0.00 38.33 3.71
39 40 0.677414 GAAGTCGTCCTCGTCCTCCT 60.677 60.000 0.00 0.00 38.33 3.69
40 41 0.959372 TGAAGTCGTCCTCGTCCTCC 60.959 60.000 0.00 0.00 38.33 4.30
41 42 0.448593 CTGAAGTCGTCCTCGTCCTC 59.551 60.000 0.00 0.00 38.33 3.71
42 43 0.961358 CCTGAAGTCGTCCTCGTCCT 60.961 60.000 0.00 0.00 38.33 3.85
43 44 0.959372 TCCTGAAGTCGTCCTCGTCC 60.959 60.000 0.00 0.00 38.33 4.79
44 45 1.096416 ATCCTGAAGTCGTCCTCGTC 58.904 55.000 0.00 0.00 38.33 4.20
45 46 2.290464 CTATCCTGAAGTCGTCCTCGT 58.710 52.381 0.00 0.00 38.33 4.18
46 47 1.604755 CCTATCCTGAAGTCGTCCTCG 59.395 57.143 0.00 0.00 38.55 4.63
47 48 1.957877 CCCTATCCTGAAGTCGTCCTC 59.042 57.143 0.00 0.00 0.00 3.71
48 49 2.030045 GCCCTATCCTGAAGTCGTCCT 61.030 57.143 0.00 0.00 0.00 3.85
49 50 0.389757 GCCCTATCCTGAAGTCGTCC 59.610 60.000 0.00 0.00 0.00 4.79
50 51 1.338655 GAGCCCTATCCTGAAGTCGTC 59.661 57.143 0.00 0.00 0.00 4.20
51 52 1.063567 AGAGCCCTATCCTGAAGTCGT 60.064 52.381 0.00 0.00 0.00 4.34
52 53 1.698506 AGAGCCCTATCCTGAAGTCG 58.301 55.000 0.00 0.00 0.00 4.18
53 54 3.824443 GAGTAGAGCCCTATCCTGAAGTC 59.176 52.174 0.00 0.00 0.00 3.01
54 55 3.205507 TGAGTAGAGCCCTATCCTGAAGT 59.794 47.826 0.00 0.00 0.00 3.01
55 56 3.572255 GTGAGTAGAGCCCTATCCTGAAG 59.428 52.174 0.00 0.00 0.00 3.02
56 57 3.205507 AGTGAGTAGAGCCCTATCCTGAA 59.794 47.826 0.00 0.00 0.00 3.02
57 58 2.786445 AGTGAGTAGAGCCCTATCCTGA 59.214 50.000 0.00 0.00 0.00 3.86
58 59 3.237268 AGTGAGTAGAGCCCTATCCTG 57.763 52.381 0.00 0.00 0.00 3.86
59 60 5.075205 TGATTAGTGAGTAGAGCCCTATCCT 59.925 44.000 0.00 0.00 0.00 3.24
60 61 5.326069 TGATTAGTGAGTAGAGCCCTATCC 58.674 45.833 0.00 0.00 0.00 2.59
61 62 5.417580 CCTGATTAGTGAGTAGAGCCCTATC 59.582 48.000 0.00 0.00 0.00 2.08
62 63 5.329399 CCTGATTAGTGAGTAGAGCCCTAT 58.671 45.833 0.00 0.00 0.00 2.57
63 64 4.447908 CCCTGATTAGTGAGTAGAGCCCTA 60.448 50.000 0.00 0.00 0.00 3.53
64 65 3.571590 CCTGATTAGTGAGTAGAGCCCT 58.428 50.000 0.00 0.00 0.00 5.19
65 66 2.630580 CCCTGATTAGTGAGTAGAGCCC 59.369 54.545 0.00 0.00 0.00 5.19
66 67 3.567397 TCCCTGATTAGTGAGTAGAGCC 58.433 50.000 0.00 0.00 0.00 4.70
67 68 4.037446 CACTCCCTGATTAGTGAGTAGAGC 59.963 50.000 2.35 0.00 44.79 4.09
68 69 5.441500 TCACTCCCTGATTAGTGAGTAGAG 58.558 45.833 2.35 0.00 45.40 2.43
69 70 5.452341 TCACTCCCTGATTAGTGAGTAGA 57.548 43.478 2.35 1.45 45.40 2.59
75 76 5.982356 TCTCATTTCACTCCCTGATTAGTG 58.018 41.667 0.00 0.00 43.63 2.74
76 77 5.130145 CCTCTCATTTCACTCCCTGATTAGT 59.870 44.000 0.00 0.00 0.00 2.24
77 78 5.609423 CCTCTCATTTCACTCCCTGATTAG 58.391 45.833 0.00 0.00 0.00 1.73
78 79 4.141620 GCCTCTCATTTCACTCCCTGATTA 60.142 45.833 0.00 0.00 0.00 1.75
79 80 3.371380 GCCTCTCATTTCACTCCCTGATT 60.371 47.826 0.00 0.00 0.00 2.57
80 81 2.172293 GCCTCTCATTTCACTCCCTGAT 59.828 50.000 0.00 0.00 0.00 2.90
81 82 1.556911 GCCTCTCATTTCACTCCCTGA 59.443 52.381 0.00 0.00 0.00 3.86
82 83 1.558756 AGCCTCTCATTTCACTCCCTG 59.441 52.381 0.00 0.00 0.00 4.45
83 84 1.558756 CAGCCTCTCATTTCACTCCCT 59.441 52.381 0.00 0.00 0.00 4.20
84 85 1.280421 ACAGCCTCTCATTTCACTCCC 59.720 52.381 0.00 0.00 0.00 4.30
85 86 2.626840 GACAGCCTCTCATTTCACTCC 58.373 52.381 0.00 0.00 0.00 3.85
86 87 2.626840 GGACAGCCTCTCATTTCACTC 58.373 52.381 0.00 0.00 0.00 3.51
87 88 1.280421 GGGACAGCCTCTCATTTCACT 59.720 52.381 0.00 0.00 0.00 3.41
88 89 1.680249 GGGGACAGCCTCTCATTTCAC 60.680 57.143 0.00 0.00 0.00 3.18
89 90 0.620556 GGGGACAGCCTCTCATTTCA 59.379 55.000 0.00 0.00 0.00 2.69
90 91 0.462759 CGGGGACAGCCTCTCATTTC 60.463 60.000 0.00 0.00 29.87 2.17
91 92 1.604378 CGGGGACAGCCTCTCATTT 59.396 57.895 0.00 0.00 29.87 2.32
92 93 3.036429 GCGGGGACAGCCTCTCATT 62.036 63.158 0.00 0.00 29.87 2.57
93 94 3.474570 GCGGGGACAGCCTCTCAT 61.475 66.667 0.00 0.00 29.87 2.90
100 101 4.699522 AAGAACGGCGGGGACAGC 62.700 66.667 13.24 0.00 0.00 4.40
101 102 1.170290 AAAAAGAACGGCGGGGACAG 61.170 55.000 13.24 0.00 0.00 3.51
102 103 1.152922 AAAAAGAACGGCGGGGACA 60.153 52.632 13.24 0.00 0.00 4.02
103 104 3.754068 AAAAAGAACGGCGGGGAC 58.246 55.556 13.24 0.00 0.00 4.46
127 128 2.186125 GGAACGGACGGGACATCC 59.814 66.667 0.00 0.00 37.34 3.51
128 129 1.447314 GTGGAACGGACGGGACATC 60.447 63.158 0.00 0.00 0.00 3.06
129 130 2.660802 GTGGAACGGACGGGACAT 59.339 61.111 0.00 0.00 0.00 3.06
130 131 3.618750 GGTGGAACGGACGGGACA 61.619 66.667 0.00 0.00 38.12 4.02
131 132 4.383861 GGGTGGAACGGACGGGAC 62.384 72.222 0.00 0.00 38.12 4.46
132 133 2.519119 ATAGGGTGGAACGGACGGGA 62.519 60.000 0.00 0.00 38.12 5.14
133 134 2.062177 ATAGGGTGGAACGGACGGG 61.062 63.158 0.00 0.00 38.12 5.28
134 135 1.143183 CATAGGGTGGAACGGACGG 59.857 63.158 0.00 0.00 38.12 4.79
135 136 0.248289 AACATAGGGTGGAACGGACG 59.752 55.000 0.00 0.00 38.12 4.79
136 137 2.081462 CAAACATAGGGTGGAACGGAC 58.919 52.381 0.00 0.00 38.12 4.79
137 138 1.979308 TCAAACATAGGGTGGAACGGA 59.021 47.619 0.00 0.00 38.12 4.69
138 139 2.081462 GTCAAACATAGGGTGGAACGG 58.919 52.381 0.00 0.00 38.12 4.44
139 140 1.730064 CGTCAAACATAGGGTGGAACG 59.270 52.381 0.00 0.00 38.12 3.95
140 141 3.000727 CTCGTCAAACATAGGGTGGAAC 58.999 50.000 0.00 0.00 0.00 3.62
141 142 2.027561 CCTCGTCAAACATAGGGTGGAA 60.028 50.000 0.00 0.00 0.00 3.53
142 143 1.553248 CCTCGTCAAACATAGGGTGGA 59.447 52.381 0.00 0.00 0.00 4.02
143 144 1.553248 TCCTCGTCAAACATAGGGTGG 59.447 52.381 0.00 0.00 0.00 4.61
144 145 2.028476 TGTCCTCGTCAAACATAGGGTG 60.028 50.000 0.00 0.00 0.00 4.61
145 146 2.253610 TGTCCTCGTCAAACATAGGGT 58.746 47.619 0.00 0.00 0.00 4.34
146 147 3.328382 TTGTCCTCGTCAAACATAGGG 57.672 47.619 0.00 0.00 0.00 3.53
147 148 4.253685 ACATTGTCCTCGTCAAACATAGG 58.746 43.478 0.00 0.00 0.00 2.57
148 149 4.031765 CGACATTGTCCTCGTCAAACATAG 59.968 45.833 11.12 0.00 0.00 2.23
149 150 3.924073 CGACATTGTCCTCGTCAAACATA 59.076 43.478 11.12 0.00 0.00 2.29
150 151 2.736721 CGACATTGTCCTCGTCAAACAT 59.263 45.455 11.12 0.00 0.00 2.71
151 152 2.131972 CGACATTGTCCTCGTCAAACA 58.868 47.619 11.12 0.00 0.00 2.83
152 153 2.096909 CACGACATTGTCCTCGTCAAAC 60.097 50.000 11.12 0.00 41.13 2.93
153 154 2.131972 CACGACATTGTCCTCGTCAAA 58.868 47.619 11.12 0.00 41.13 2.69
154 155 1.338655 TCACGACATTGTCCTCGTCAA 59.661 47.619 11.12 0.00 41.13 3.18
155 156 0.955905 TCACGACATTGTCCTCGTCA 59.044 50.000 11.12 0.00 41.13 4.35
156 157 1.337821 GTCACGACATTGTCCTCGTC 58.662 55.000 11.12 0.00 41.13 4.20
157 158 0.386858 CGTCACGACATTGTCCTCGT 60.387 55.000 11.12 3.84 43.83 4.18
158 159 1.071019 CCGTCACGACATTGTCCTCG 61.071 60.000 11.12 9.93 35.96 4.63
159 160 0.038526 ACCGTCACGACATTGTCCTC 60.039 55.000 11.12 0.00 0.00 3.71
160 161 0.391597 AACCGTCACGACATTGTCCT 59.608 50.000 11.12 0.00 0.00 3.85
161 162 2.068837 TAACCGTCACGACATTGTCC 57.931 50.000 11.12 0.00 0.00 4.02
162 163 6.204359 ACTATATAACCGTCACGACATTGTC 58.796 40.000 0.00 6.73 0.00 3.18
163 164 6.140303 ACTATATAACCGTCACGACATTGT 57.860 37.500 0.00 0.00 0.00 2.71
164 165 8.738199 AATACTATATAACCGTCACGACATTG 57.262 34.615 0.00 0.00 0.00 2.82
165 166 9.754382 AAAATACTATATAACCGTCACGACATT 57.246 29.630 0.00 0.00 0.00 2.71
166 167 9.754382 AAAAATACTATATAACCGTCACGACAT 57.246 29.630 0.00 0.00 0.00 3.06
216 217 9.520204 GCTTAATGACATGCTTGTACATAATTT 57.480 29.630 5.05 1.17 35.79 1.82
217 218 8.906867 AGCTTAATGACATGCTTGTACATAATT 58.093 29.630 5.05 4.36 35.79 1.40
218 219 8.455903 AGCTTAATGACATGCTTGTACATAAT 57.544 30.769 5.05 1.36 35.79 1.28
219 220 7.864108 AGCTTAATGACATGCTTGTACATAA 57.136 32.000 5.05 4.74 35.79 1.90
220 221 8.956533 TTAGCTTAATGACATGCTTGTACATA 57.043 30.769 5.05 0.00 35.79 2.29
221 222 7.864108 TTAGCTTAATGACATGCTTGTACAT 57.136 32.000 5.05 8.20 35.79 2.29
222 223 7.864108 ATTAGCTTAATGACATGCTTGTACA 57.136 32.000 5.05 6.32 35.79 2.90
223 224 9.046296 AGTATTAGCTTAATGACATGCTTGTAC 57.954 33.333 5.05 7.81 35.79 2.90
224 225 9.613428 AAGTATTAGCTTAATGACATGCTTGTA 57.387 29.630 5.05 0.00 35.79 2.41
225 226 8.511604 AAGTATTAGCTTAATGACATGCTTGT 57.488 30.769 4.68 4.68 39.32 3.16
226 227 9.793252 AAAAGTATTAGCTTAATGACATGCTTG 57.207 29.630 4.28 0.00 37.02 4.01
240 241 9.515226 TCAGTGGAAAATGTAAAAGTATTAGCT 57.485 29.630 0.00 0.00 0.00 3.32
247 248 8.143835 CCAGAATTCAGTGGAAAATGTAAAAGT 58.856 33.333 8.44 0.00 36.43 2.66
248 249 8.143835 ACCAGAATTCAGTGGAAAATGTAAAAG 58.856 33.333 18.09 0.00 37.27 2.27
249 250 8.017418 ACCAGAATTCAGTGGAAAATGTAAAA 57.983 30.769 18.09 0.00 37.27 1.52
250 251 7.595819 ACCAGAATTCAGTGGAAAATGTAAA 57.404 32.000 18.09 0.00 37.27 2.01
251 252 7.595819 AACCAGAATTCAGTGGAAAATGTAA 57.404 32.000 18.09 0.00 37.27 2.41
252 253 7.942341 ACTAACCAGAATTCAGTGGAAAATGTA 59.058 33.333 18.09 2.97 37.27 2.29
253 254 6.777580 ACTAACCAGAATTCAGTGGAAAATGT 59.222 34.615 18.09 8.09 37.27 2.71
254 255 7.219484 ACTAACCAGAATTCAGTGGAAAATG 57.781 36.000 18.09 7.62 37.27 2.32
255 256 8.934023 TTACTAACCAGAATTCAGTGGAAAAT 57.066 30.769 18.09 5.91 37.27 1.82
256 257 7.040686 GCTTACTAACCAGAATTCAGTGGAAAA 60.041 37.037 18.09 4.67 37.27 2.29
257 258 6.430000 GCTTACTAACCAGAATTCAGTGGAAA 59.570 38.462 18.09 6.65 37.27 3.13
258 259 5.938125 GCTTACTAACCAGAATTCAGTGGAA 59.062 40.000 18.09 6.94 37.27 3.53
259 260 5.248477 AGCTTACTAACCAGAATTCAGTGGA 59.752 40.000 18.09 3.04 37.27 4.02
260 261 5.491982 AGCTTACTAACCAGAATTCAGTGG 58.508 41.667 8.44 10.07 39.98 4.00
261 262 7.324178 ACTAGCTTACTAACCAGAATTCAGTG 58.676 38.462 8.44 0.00 0.00 3.66
262 263 7.483580 ACTAGCTTACTAACCAGAATTCAGT 57.516 36.000 8.44 4.48 0.00 3.41
263 264 7.644551 CGTACTAGCTTACTAACCAGAATTCAG 59.355 40.741 8.44 0.00 0.00 3.02
264 265 7.121759 ACGTACTAGCTTACTAACCAGAATTCA 59.878 37.037 8.44 0.00 0.00 2.57
265 266 7.479150 ACGTACTAGCTTACTAACCAGAATTC 58.521 38.462 0.00 0.00 0.00 2.17
266 267 7.401955 ACGTACTAGCTTACTAACCAGAATT 57.598 36.000 0.00 0.00 0.00 2.17
267 268 7.772757 AGTACGTACTAGCTTACTAACCAGAAT 59.227 37.037 26.36 0.00 34.13 2.40
268 269 7.106239 AGTACGTACTAGCTTACTAACCAGAA 58.894 38.462 26.36 0.00 34.13 3.02
269 270 6.644347 AGTACGTACTAGCTTACTAACCAGA 58.356 40.000 26.36 0.00 34.13 3.86
270 271 6.917217 AGTACGTACTAGCTTACTAACCAG 57.083 41.667 26.36 0.00 34.13 4.00
271 272 7.607991 AGAAAGTACGTACTAGCTTACTAACCA 59.392 37.037 27.59 0.00 34.99 3.67
272 273 7.980062 AGAAAGTACGTACTAGCTTACTAACC 58.020 38.462 27.59 6.65 34.99 2.85
273 274 9.271738 CAAGAAAGTACGTACTAGCTTACTAAC 57.728 37.037 28.13 11.78 34.99 2.34
274 275 9.219603 TCAAGAAAGTACGTACTAGCTTACTAA 57.780 33.333 28.13 17.71 34.99 2.24
275 276 8.777865 TCAAGAAAGTACGTACTAGCTTACTA 57.222 34.615 28.13 19.29 34.99 1.82
276 277 7.678947 TCAAGAAAGTACGTACTAGCTTACT 57.321 36.000 28.13 18.80 34.99 2.24
277 278 8.908172 ATTCAAGAAAGTACGTACTAGCTTAC 57.092 34.615 28.13 17.47 34.99 2.34
278 279 9.565213 GAATTCAAGAAAGTACGTACTAGCTTA 57.435 33.333 28.13 20.07 34.99 3.09
279 280 8.305317 AGAATTCAAGAAAGTACGTACTAGCTT 58.695 33.333 27.59 26.26 34.99 3.74
280 281 7.828712 AGAATTCAAGAAAGTACGTACTAGCT 58.171 34.615 27.59 22.67 34.99 3.32
281 282 7.044836 CGAGAATTCAAGAAAGTACGTACTAGC 60.045 40.741 27.59 20.97 34.99 3.42
282 283 7.428761 CCGAGAATTCAAGAAAGTACGTACTAG 59.571 40.741 27.59 15.06 34.99 2.57
283 284 7.094634 ACCGAGAATTCAAGAAAGTACGTACTA 60.095 37.037 27.59 11.37 34.99 1.82
284 285 6.091437 CCGAGAATTCAAGAAAGTACGTACT 58.909 40.000 22.45 22.45 38.39 2.73
285 286 5.860716 ACCGAGAATTCAAGAAAGTACGTAC 59.139 40.000 18.10 18.10 0.00 3.67
286 287 5.860182 CACCGAGAATTCAAGAAAGTACGTA 59.140 40.000 8.44 0.00 0.00 3.57
287 288 4.684703 CACCGAGAATTCAAGAAAGTACGT 59.315 41.667 8.44 0.00 0.00 3.57
288 289 4.921515 TCACCGAGAATTCAAGAAAGTACG 59.078 41.667 8.44 0.00 0.00 3.67
289 290 5.164080 CGTCACCGAGAATTCAAGAAAGTAC 60.164 44.000 8.44 0.00 35.63 2.73
290 291 4.921515 CGTCACCGAGAATTCAAGAAAGTA 59.078 41.667 8.44 0.00 35.63 2.24
291 292 3.741344 CGTCACCGAGAATTCAAGAAAGT 59.259 43.478 8.44 0.00 35.63 2.66
292 293 3.741344 ACGTCACCGAGAATTCAAGAAAG 59.259 43.478 8.44 0.00 37.88 2.62
293 294 3.724374 ACGTCACCGAGAATTCAAGAAA 58.276 40.909 8.44 0.00 37.88 2.52
294 295 3.243602 TGACGTCACCGAGAATTCAAGAA 60.244 43.478 15.76 0.00 37.88 2.52
295 296 2.295070 TGACGTCACCGAGAATTCAAGA 59.705 45.455 15.76 0.00 37.88 3.02
296 297 2.672714 TGACGTCACCGAGAATTCAAG 58.327 47.619 15.76 0.61 37.88 3.02
297 298 2.804697 TGACGTCACCGAGAATTCAA 57.195 45.000 15.76 0.00 37.88 2.69
298 299 2.993220 CAATGACGTCACCGAGAATTCA 59.007 45.455 22.71 0.00 37.88 2.57
299 300 3.250744 TCAATGACGTCACCGAGAATTC 58.749 45.455 22.71 0.00 37.88 2.17
300 301 3.254060 CTCAATGACGTCACCGAGAATT 58.746 45.455 29.33 14.44 37.88 2.17
301 302 2.881074 CTCAATGACGTCACCGAGAAT 58.119 47.619 29.33 9.55 37.88 2.40
302 303 1.668919 GCTCAATGACGTCACCGAGAA 60.669 52.381 33.92 14.41 37.88 2.87
303 304 0.109272 GCTCAATGACGTCACCGAGA 60.109 55.000 33.92 22.63 37.88 4.04
304 305 0.109086 AGCTCAATGACGTCACCGAG 60.109 55.000 29.03 29.03 37.88 4.63
305 306 1.170442 TAGCTCAATGACGTCACCGA 58.830 50.000 22.71 18.47 37.88 4.69
306 307 2.209838 ATAGCTCAATGACGTCACCG 57.790 50.000 22.71 14.98 40.83 4.94
307 308 3.053455 GCTATAGCTCAATGACGTCACC 58.947 50.000 22.71 7.11 38.21 4.02
308 309 3.487574 GTGCTATAGCTCAATGACGTCAC 59.512 47.826 22.71 7.78 42.66 3.67
309 310 3.381590 AGTGCTATAGCTCAATGACGTCA 59.618 43.478 22.48 22.48 42.66 4.35
310 311 3.971150 AGTGCTATAGCTCAATGACGTC 58.029 45.455 24.61 9.11 42.66 4.34
311 312 4.098654 AGAAGTGCTATAGCTCAATGACGT 59.901 41.667 24.61 11.82 42.66 4.34
312 313 4.615949 AGAAGTGCTATAGCTCAATGACG 58.384 43.478 24.61 0.00 42.66 4.35
313 314 5.691305 CAGAGAAGTGCTATAGCTCAATGAC 59.309 44.000 24.61 13.49 42.66 3.06
314 315 5.362143 ACAGAGAAGTGCTATAGCTCAATGA 59.638 40.000 24.61 0.98 42.66 2.57
315 316 5.599732 ACAGAGAAGTGCTATAGCTCAATG 58.400 41.667 24.61 16.94 42.66 2.82
316 317 5.867903 ACAGAGAAGTGCTATAGCTCAAT 57.132 39.130 24.61 14.17 42.66 2.57
317 318 5.067936 GGTACAGAGAAGTGCTATAGCTCAA 59.932 44.000 24.61 2.54 42.66 3.02
318 319 4.580995 GGTACAGAGAAGTGCTATAGCTCA 59.419 45.833 24.61 3.32 42.66 4.26
319 320 4.022676 GGGTACAGAGAAGTGCTATAGCTC 60.023 50.000 24.61 20.80 42.66 4.09
320 321 3.892588 GGGTACAGAGAAGTGCTATAGCT 59.107 47.826 24.61 5.44 42.66 3.32
321 322 3.304794 CGGGTACAGAGAAGTGCTATAGC 60.305 52.174 18.18 18.18 42.50 2.97
322 323 3.304794 GCGGGTACAGAGAAGTGCTATAG 60.305 52.174 0.00 0.00 0.00 1.31
323 324 2.621998 GCGGGTACAGAGAAGTGCTATA 59.378 50.000 0.00 0.00 0.00 1.31
324 325 1.409427 GCGGGTACAGAGAAGTGCTAT 59.591 52.381 0.00 0.00 0.00 2.97
325 326 0.815734 GCGGGTACAGAGAAGTGCTA 59.184 55.000 0.00 0.00 0.00 3.49
326 327 1.185618 TGCGGGTACAGAGAAGTGCT 61.186 55.000 0.00 0.00 0.00 4.40
327 328 0.320421 TTGCGGGTACAGAGAAGTGC 60.320 55.000 0.00 0.00 0.00 4.40
328 329 2.163818 TTTGCGGGTACAGAGAAGTG 57.836 50.000 0.00 0.00 0.00 3.16
329 330 2.354805 GGATTTGCGGGTACAGAGAAGT 60.355 50.000 0.00 0.00 0.00 3.01
330 331 2.280628 GGATTTGCGGGTACAGAGAAG 58.719 52.381 0.00 0.00 0.00 2.85
331 332 1.065709 GGGATTTGCGGGTACAGAGAA 60.066 52.381 0.00 0.00 0.00 2.87
332 333 0.539986 GGGATTTGCGGGTACAGAGA 59.460 55.000 0.00 0.00 0.00 3.10
333 334 0.251916 TGGGATTTGCGGGTACAGAG 59.748 55.000 0.00 0.00 0.00 3.35
334 335 0.251916 CTGGGATTTGCGGGTACAGA 59.748 55.000 0.00 0.00 0.00 3.41
335 336 0.251916 TCTGGGATTTGCGGGTACAG 59.748 55.000 0.00 0.00 0.00 2.74
336 337 0.693622 TTCTGGGATTTGCGGGTACA 59.306 50.000 0.00 0.00 0.00 2.90
337 338 1.339727 ACTTCTGGGATTTGCGGGTAC 60.340 52.381 0.00 0.00 0.00 3.34
338 339 0.988832 ACTTCTGGGATTTGCGGGTA 59.011 50.000 0.00 0.00 0.00 3.69
339 340 0.112412 AACTTCTGGGATTTGCGGGT 59.888 50.000 0.00 0.00 0.00 5.28
340 341 1.256812 AAACTTCTGGGATTTGCGGG 58.743 50.000 0.00 0.00 0.00 6.13
341 342 4.513198 TTAAAACTTCTGGGATTTGCGG 57.487 40.909 0.00 0.00 0.00 5.69
342 343 4.381566 CGTTTAAAACTTCTGGGATTTGCG 59.618 41.667 0.00 0.00 0.00 4.85
343 344 5.286438 ACGTTTAAAACTTCTGGGATTTGC 58.714 37.500 0.00 0.00 0.00 3.68
344 345 6.500041 TGACGTTTAAAACTTCTGGGATTTG 58.500 36.000 0.00 0.00 31.54 2.32
345 346 6.320418 ACTGACGTTTAAAACTTCTGGGATTT 59.680 34.615 0.00 0.00 34.41 2.17
346 347 5.826208 ACTGACGTTTAAAACTTCTGGGATT 59.174 36.000 0.00 0.00 34.41 3.01
347 348 5.374071 ACTGACGTTTAAAACTTCTGGGAT 58.626 37.500 0.00 0.00 34.41 3.85
348 349 4.773013 ACTGACGTTTAAAACTTCTGGGA 58.227 39.130 0.00 0.00 34.41 4.37
349 350 5.270853 CAACTGACGTTTAAAACTTCTGGG 58.729 41.667 0.00 0.00 34.41 4.45
350 351 5.065474 TCCAACTGACGTTTAAAACTTCTGG 59.935 40.000 0.00 0.00 34.41 3.86
351 352 5.963586 GTCCAACTGACGTTTAAAACTTCTG 59.036 40.000 0.00 0.00 35.62 3.02
352 353 5.065602 GGTCCAACTGACGTTTAAAACTTCT 59.934 40.000 0.00 0.00 45.46 2.85
353 354 5.268544 GGTCCAACTGACGTTTAAAACTTC 58.731 41.667 0.00 0.00 45.46 3.01
354 355 4.096833 GGGTCCAACTGACGTTTAAAACTT 59.903 41.667 0.00 0.00 45.46 2.66
355 356 3.628942 GGGTCCAACTGACGTTTAAAACT 59.371 43.478 0.00 0.00 45.46 2.66
356 357 3.628942 AGGGTCCAACTGACGTTTAAAAC 59.371 43.478 0.00 0.00 45.46 2.43
357 358 3.888583 AGGGTCCAACTGACGTTTAAAA 58.111 40.909 0.00 0.00 45.46 1.52
358 359 3.564053 AGGGTCCAACTGACGTTTAAA 57.436 42.857 0.00 0.00 45.46 1.52
359 360 4.503643 CCTTAGGGTCCAACTGACGTTTAA 60.504 45.833 0.00 0.00 45.46 1.52
360 361 3.007182 CCTTAGGGTCCAACTGACGTTTA 59.993 47.826 0.00 0.00 45.46 2.01
361 362 2.224450 CCTTAGGGTCCAACTGACGTTT 60.224 50.000 0.00 0.00 45.46 3.60
362 363 1.346722 CCTTAGGGTCCAACTGACGTT 59.653 52.381 0.00 0.00 45.46 3.99
363 364 0.974383 CCTTAGGGTCCAACTGACGT 59.026 55.000 0.00 0.00 45.46 4.34
364 365 0.974383 ACCTTAGGGTCCAACTGACG 59.026 55.000 2.32 0.00 43.38 4.35
365 366 4.383880 GGAATACCTTAGGGTCCAACTGAC 60.384 50.000 0.00 0.00 45.98 3.51
366 367 3.778629 GGAATACCTTAGGGTCCAACTGA 59.221 47.826 0.00 0.00 45.98 3.41
367 368 3.118000 GGGAATACCTTAGGGTCCAACTG 60.118 52.174 16.31 0.00 45.98 3.16
368 369 3.120898 GGGAATACCTTAGGGTCCAACT 58.879 50.000 16.31 0.00 45.98 3.16
369 370 3.572632 GGGAATACCTTAGGGTCCAAC 57.427 52.381 16.31 0.00 45.98 3.77
381 382 0.913924 TTTGGGACGGAGGGAATACC 59.086 55.000 0.00 0.00 40.67 2.73
382 383 2.793288 TTTTGGGACGGAGGGAATAC 57.207 50.000 0.00 0.00 0.00 1.89
383 384 6.559539 TCTTATATTTTGGGACGGAGGGAATA 59.440 38.462 0.00 0.00 0.00 1.75
384 385 5.371472 TCTTATATTTTGGGACGGAGGGAAT 59.629 40.000 0.00 0.00 0.00 3.01
385 386 4.722781 TCTTATATTTTGGGACGGAGGGAA 59.277 41.667 0.00 0.00 0.00 3.97
386 387 4.102054 GTCTTATATTTTGGGACGGAGGGA 59.898 45.833 0.00 0.00 0.00 4.20
387 388 4.386711 GTCTTATATTTTGGGACGGAGGG 58.613 47.826 0.00 0.00 0.00 4.30
388 389 4.056050 CGTCTTATATTTTGGGACGGAGG 58.944 47.826 0.00 0.00 43.69 4.30
389 390 3.493503 GCGTCTTATATTTTGGGACGGAG 59.506 47.826 14.00 0.00 46.26 4.63
390 391 3.133362 AGCGTCTTATATTTTGGGACGGA 59.867 43.478 14.00 0.00 46.26 4.69
391 392 3.463944 AGCGTCTTATATTTTGGGACGG 58.536 45.455 14.00 0.00 46.26 4.79
393 394 6.074463 CGTCTTAGCGTCTTATATTTTGGGAC 60.074 42.308 0.00 0.00 0.00 4.46
394 395 5.981315 CGTCTTAGCGTCTTATATTTTGGGA 59.019 40.000 0.00 0.00 0.00 4.37
395 396 5.333111 GCGTCTTAGCGTCTTATATTTTGGG 60.333 44.000 0.00 0.00 0.00 4.12
396 397 5.462398 AGCGTCTTAGCGTCTTATATTTTGG 59.538 40.000 0.00 0.00 43.00 3.28
397 398 6.512177 AGCGTCTTAGCGTCTTATATTTTG 57.488 37.500 0.00 0.00 43.00 2.44
398 399 8.080417 TGATAGCGTCTTAGCGTCTTATATTTT 58.920 33.333 0.00 0.00 43.00 1.82
399 400 7.591165 TGATAGCGTCTTAGCGTCTTATATTT 58.409 34.615 0.00 0.00 43.00 1.40
400 401 7.142306 TGATAGCGTCTTAGCGTCTTATATT 57.858 36.000 0.00 0.00 43.00 1.28
401 402 6.738832 TGATAGCGTCTTAGCGTCTTATAT 57.261 37.500 0.00 0.00 43.00 0.86
402 403 6.370718 TCATGATAGCGTCTTAGCGTCTTATA 59.629 38.462 0.00 0.00 43.00 0.98
403 404 5.181433 TCATGATAGCGTCTTAGCGTCTTAT 59.819 40.000 0.00 0.00 43.00 1.73
404 405 4.514066 TCATGATAGCGTCTTAGCGTCTTA 59.486 41.667 0.00 0.00 43.00 2.10
405 406 3.315470 TCATGATAGCGTCTTAGCGTCTT 59.685 43.478 0.00 0.00 43.00 3.01
406 407 2.879026 TCATGATAGCGTCTTAGCGTCT 59.121 45.455 0.00 0.00 43.00 4.18
407 408 3.269486 TCATGATAGCGTCTTAGCGTC 57.731 47.619 0.00 0.00 43.00 5.19
408 409 3.924918 ATCATGATAGCGTCTTAGCGT 57.075 42.857 6.36 0.00 43.00 5.07
409 410 5.573146 TGATATCATGATAGCGTCTTAGCG 58.427 41.667 22.37 0.00 43.00 4.26
410 411 7.818493 TTTGATATCATGATAGCGTCTTAGC 57.182 36.000 22.37 3.23 32.69 3.09
433 434 8.421249 TCCATCCTGAAATGTAAGATGTTTTT 57.579 30.769 0.00 0.00 33.95 1.94
434 435 7.123247 CCTCCATCCTGAAATGTAAGATGTTTT 59.877 37.037 0.00 0.00 33.95 2.43
435 436 6.604795 CCTCCATCCTGAAATGTAAGATGTTT 59.395 38.462 0.00 0.00 33.95 2.83
436 437 6.125029 CCTCCATCCTGAAATGTAAGATGTT 58.875 40.000 0.00 0.00 33.95 2.71
437 438 5.398353 CCCTCCATCCTGAAATGTAAGATGT 60.398 44.000 0.00 0.00 33.95 3.06
438 439 5.068636 CCCTCCATCCTGAAATGTAAGATG 58.931 45.833 0.00 0.00 35.24 2.90
439 440 4.977739 TCCCTCCATCCTGAAATGTAAGAT 59.022 41.667 0.00 0.00 0.00 2.40
440 441 4.370776 TCCCTCCATCCTGAAATGTAAGA 58.629 43.478 0.00 0.00 0.00 2.10
441 442 4.164988 ACTCCCTCCATCCTGAAATGTAAG 59.835 45.833 0.00 0.00 0.00 2.34
442 443 4.111577 ACTCCCTCCATCCTGAAATGTAA 58.888 43.478 0.00 0.00 0.00 2.41
443 444 3.736094 ACTCCCTCCATCCTGAAATGTA 58.264 45.455 0.00 0.00 0.00 2.29
444 445 2.566746 ACTCCCTCCATCCTGAAATGT 58.433 47.619 0.00 0.00 0.00 2.71
445 446 3.713764 AGTACTCCCTCCATCCTGAAATG 59.286 47.826 0.00 0.00 0.00 2.32
446 447 4.014273 AGTACTCCCTCCATCCTGAAAT 57.986 45.455 0.00 0.00 0.00 2.17
447 448 3.491766 AGTACTCCCTCCATCCTGAAA 57.508 47.619 0.00 0.00 0.00 2.69
448 449 4.620086 TTAGTACTCCCTCCATCCTGAA 57.380 45.455 0.00 0.00 0.00 3.02
449 450 4.620086 TTTAGTACTCCCTCCATCCTGA 57.380 45.455 0.00 0.00 0.00 3.86
450 451 4.901849 TCATTTAGTACTCCCTCCATCCTG 59.098 45.833 0.00 0.00 0.00 3.86
451 452 4.902448 GTCATTTAGTACTCCCTCCATCCT 59.098 45.833 0.00 0.00 0.00 3.24
452 453 4.902448 AGTCATTTAGTACTCCCTCCATCC 59.098 45.833 0.00 0.00 0.00 3.51
453 454 7.784470 ATAGTCATTTAGTACTCCCTCCATC 57.216 40.000 0.00 0.00 0.00 3.51
454 455 9.845214 ATTATAGTCATTTAGTACTCCCTCCAT 57.155 33.333 0.00 0.00 0.00 3.41
455 456 9.670442 AATTATAGTCATTTAGTACTCCCTCCA 57.330 33.333 0.00 0.00 0.00 3.86
456 457 9.930693 CAATTATAGTCATTTAGTACTCCCTCC 57.069 37.037 0.00 0.00 0.00 4.30
457 458 9.425577 GCAATTATAGTCATTTAGTACTCCCTC 57.574 37.037 0.00 0.00 0.00 4.30
458 459 9.160412 AGCAATTATAGTCATTTAGTACTCCCT 57.840 33.333 0.00 0.00 0.00 4.20
459 460 9.780186 AAGCAATTATAGTCATTTAGTACTCCC 57.220 33.333 0.00 0.00 0.00 4.30
504 505 7.504924 AGATTGGTCACGACATCTTTAAAAA 57.495 32.000 0.00 0.00 0.00 1.94
505 506 7.504924 AAGATTGGTCACGACATCTTTAAAA 57.495 32.000 6.85 0.00 33.13 1.52
506 507 6.128661 CGAAGATTGGTCACGACATCTTTAAA 60.129 38.462 11.78 0.00 35.50 1.52
507 508 5.347635 CGAAGATTGGTCACGACATCTTTAA 59.652 40.000 11.78 0.00 35.50 1.52
508 509 4.862574 CGAAGATTGGTCACGACATCTTTA 59.137 41.667 11.78 0.00 35.50 1.85
509 510 3.679980 CGAAGATTGGTCACGACATCTTT 59.320 43.478 11.78 0.87 35.50 2.52
510 511 3.254060 CGAAGATTGGTCACGACATCTT 58.746 45.455 10.79 10.79 37.01 2.40
511 512 2.417379 CCGAAGATTGGTCACGACATCT 60.417 50.000 0.00 0.00 0.00 2.90
512 513 1.927174 CCGAAGATTGGTCACGACATC 59.073 52.381 0.00 0.00 0.00 3.06
513 514 1.548719 TCCGAAGATTGGTCACGACAT 59.451 47.619 0.00 0.00 0.00 3.06
514 515 0.963225 TCCGAAGATTGGTCACGACA 59.037 50.000 0.00 0.00 0.00 4.35
515 516 2.295253 ATCCGAAGATTGGTCACGAC 57.705 50.000 0.00 0.00 0.00 4.34
516 517 3.328382 AAATCCGAAGATTGGTCACGA 57.672 42.857 0.00 0.00 42.03 4.35
517 518 5.539582 TTTAAATCCGAAGATTGGTCACG 57.460 39.130 0.00 0.00 42.03 4.35
518 519 8.757164 AAATTTTAAATCCGAAGATTGGTCAC 57.243 30.769 0.00 0.00 42.03 3.67
519 520 8.580720 TGAAATTTTAAATCCGAAGATTGGTCA 58.419 29.630 0.00 0.00 42.03 4.02
520 521 8.980143 TGAAATTTTAAATCCGAAGATTGGTC 57.020 30.769 0.00 0.00 42.03 4.02
521 522 9.771534 TTTGAAATTTTAAATCCGAAGATTGGT 57.228 25.926 4.15 0.00 42.03 3.67
526 527 9.255304 CCAGTTTTGAAATTTTAAATCCGAAGA 57.745 29.630 8.74 0.00 0.00 2.87
527 528 9.040939 ACCAGTTTTGAAATTTTAAATCCGAAG 57.959 29.630 8.74 0.84 0.00 3.79
528 529 8.950208 ACCAGTTTTGAAATTTTAAATCCGAA 57.050 26.923 8.74 0.00 0.00 4.30
529 530 9.685828 CTACCAGTTTTGAAATTTTAAATCCGA 57.314 29.630 8.74 0.00 0.00 4.55
530 531 8.432359 GCTACCAGTTTTGAAATTTTAAATCCG 58.568 33.333 8.74 1.94 0.00 4.18
531 532 9.267084 TGCTACCAGTTTTGAAATTTTAAATCC 57.733 29.630 8.74 3.93 0.00 3.01
558 559 9.713713 GAAAAGAACCCAGGAGATTATATCTAC 57.286 37.037 0.00 0.00 40.38 2.59
559 560 9.447279 TGAAAAGAACCCAGGAGATTATATCTA 57.553 33.333 0.00 0.00 40.38 1.98
560 561 8.337118 TGAAAAGAACCCAGGAGATTATATCT 57.663 34.615 0.00 0.00 43.70 1.98
561 562 8.432805 TCTGAAAAGAACCCAGGAGATTATATC 58.567 37.037 0.00 0.00 0.00 1.63
562 563 8.214364 GTCTGAAAAGAACCCAGGAGATTATAT 58.786 37.037 0.00 0.00 0.00 0.86
563 564 7.182026 TGTCTGAAAAGAACCCAGGAGATTATA 59.818 37.037 0.00 0.00 0.00 0.98
564 565 6.012508 TGTCTGAAAAGAACCCAGGAGATTAT 60.013 38.462 0.00 0.00 0.00 1.28
565 566 5.309543 TGTCTGAAAAGAACCCAGGAGATTA 59.690 40.000 0.00 0.00 0.00 1.75
566 567 4.104738 TGTCTGAAAAGAACCCAGGAGATT 59.895 41.667 0.00 0.00 0.00 2.40
567 568 3.652869 TGTCTGAAAAGAACCCAGGAGAT 59.347 43.478 0.00 0.00 0.00 2.75
568 569 3.045634 TGTCTGAAAAGAACCCAGGAGA 58.954 45.455 0.00 0.00 0.00 3.71
569 570 3.492102 TGTCTGAAAAGAACCCAGGAG 57.508 47.619 0.00 0.00 0.00 3.69
570 571 3.754965 CATGTCTGAAAAGAACCCAGGA 58.245 45.455 0.00 0.00 0.00 3.86
571 572 2.229784 GCATGTCTGAAAAGAACCCAGG 59.770 50.000 0.00 0.00 0.00 4.45
572 573 3.057736 CAGCATGTCTGAAAAGAACCCAG 60.058 47.826 10.51 0.00 45.72 4.45
573 574 2.886523 CAGCATGTCTGAAAAGAACCCA 59.113 45.455 10.51 0.00 45.72 4.51
574 575 3.565905 CAGCATGTCTGAAAAGAACCC 57.434 47.619 10.51 0.00 45.72 4.11
584 585 0.169009 TCGTCGAGTCAGCATGTCTG 59.831 55.000 9.94 9.94 44.21 3.51
585 586 0.169230 GTCGTCGAGTCAGCATGTCT 59.831 55.000 0.00 0.00 37.14 3.41
586 587 0.169230 AGTCGTCGAGTCAGCATGTC 59.831 55.000 0.00 0.00 37.40 3.06
587 588 0.598562 AAGTCGTCGAGTCAGCATGT 59.401 50.000 2.41 0.00 37.40 3.21
588 589 1.702886 AAAGTCGTCGAGTCAGCATG 58.297 50.000 2.41 0.00 37.54 4.06
589 590 2.029828 AGAAAAGTCGTCGAGTCAGCAT 60.030 45.455 2.41 0.00 0.00 3.79
590 591 1.337071 AGAAAAGTCGTCGAGTCAGCA 59.663 47.619 2.41 0.00 0.00 4.41
591 592 1.980156 GAGAAAAGTCGTCGAGTCAGC 59.020 52.381 2.41 0.00 0.00 4.26
592 593 3.546002 AGAGAAAAGTCGTCGAGTCAG 57.454 47.619 2.41 0.00 0.00 3.51
593 594 6.922247 ATATAGAGAAAAGTCGTCGAGTCA 57.078 37.500 2.41 0.00 0.00 3.41
594 595 9.956797 GTATATATAGAGAAAAGTCGTCGAGTC 57.043 37.037 2.41 0.00 0.00 3.36
595 596 8.646356 CGTATATATAGAGAAAAGTCGTCGAGT 58.354 37.037 0.00 0.00 0.00 4.18
596 597 8.858186 TCGTATATATAGAGAAAAGTCGTCGAG 58.142 37.037 0.00 0.00 0.00 4.04
597 598 8.748380 TCGTATATATAGAGAAAAGTCGTCGA 57.252 34.615 0.00 0.00 0.00 4.20
598 599 9.411169 CATCGTATATATAGAGAAAAGTCGTCG 57.589 37.037 0.00 0.00 0.00 5.12
599 600 9.705471 CCATCGTATATATAGAGAAAAGTCGTC 57.295 37.037 0.00 0.00 0.00 4.20
600 601 9.228949 ACCATCGTATATATAGAGAAAAGTCGT 57.771 33.333 0.00 0.00 0.00 4.34
615 616 8.662141 GCCAATATTTTTCGTACCATCGTATAT 58.338 33.333 0.00 0.00 0.00 0.86
616 617 7.656542 TGCCAATATTTTTCGTACCATCGTATA 59.343 33.333 0.00 0.00 0.00 1.47
617 618 6.483974 TGCCAATATTTTTCGTACCATCGTAT 59.516 34.615 0.00 0.00 0.00 3.06
618 619 5.816258 TGCCAATATTTTTCGTACCATCGTA 59.184 36.000 0.00 0.00 0.00 3.43
619 620 4.636648 TGCCAATATTTTTCGTACCATCGT 59.363 37.500 0.00 0.00 0.00 3.73
620 621 4.967575 GTGCCAATATTTTTCGTACCATCG 59.032 41.667 0.00 0.00 0.00 3.84
621 622 5.885881 TGTGCCAATATTTTTCGTACCATC 58.114 37.500 0.00 0.00 0.00 3.51
622 623 5.906113 TGTGCCAATATTTTTCGTACCAT 57.094 34.783 0.00 0.00 0.00 3.55
623 624 5.416013 TCATGTGCCAATATTTTTCGTACCA 59.584 36.000 0.00 0.00 0.00 3.25
624 625 5.885881 TCATGTGCCAATATTTTTCGTACC 58.114 37.500 0.00 0.00 0.00 3.34
625 626 7.380438 CATCATGTGCCAATATTTTTCGTAC 57.620 36.000 0.00 0.00 0.00 3.67
643 644 1.738908 TGGTTGACGTGATGCATCATG 59.261 47.619 36.32 36.32 46.59 3.07
644 645 2.112380 TGGTTGACGTGATGCATCAT 57.888 45.000 30.89 17.33 39.30 2.45
645 646 1.805943 CTTGGTTGACGTGATGCATCA 59.194 47.619 25.42 25.42 0.00 3.07
646 647 1.131126 CCTTGGTTGACGTGATGCATC 59.869 52.381 20.14 20.14 0.00 3.91
647 648 1.167851 CCTTGGTTGACGTGATGCAT 58.832 50.000 0.00 0.00 0.00 3.96
648 649 1.514678 GCCTTGGTTGACGTGATGCA 61.515 55.000 0.00 0.00 0.00 3.96
649 650 1.210155 GCCTTGGTTGACGTGATGC 59.790 57.895 0.00 0.00 0.00 3.91
650 651 0.888736 TGGCCTTGGTTGACGTGATG 60.889 55.000 3.32 0.00 0.00 3.07
651 652 0.889186 GTGGCCTTGGTTGACGTGAT 60.889 55.000 3.32 0.00 0.00 3.06
652 653 1.525077 GTGGCCTTGGTTGACGTGA 60.525 57.895 3.32 0.00 0.00 4.35
653 654 2.551912 GGTGGCCTTGGTTGACGTG 61.552 63.158 3.32 0.00 0.00 4.49
654 655 2.203294 GGTGGCCTTGGTTGACGT 60.203 61.111 3.32 0.00 0.00 4.34
655 656 2.718747 TACGGTGGCCTTGGTTGACG 62.719 60.000 3.32 0.00 0.00 4.35
656 657 1.071814 TACGGTGGCCTTGGTTGAC 59.928 57.895 3.32 0.00 0.00 3.18
657 658 1.071814 GTACGGTGGCCTTGGTTGA 59.928 57.895 3.32 0.00 0.00 3.18
658 659 0.820074 TTGTACGGTGGCCTTGGTTG 60.820 55.000 3.32 0.00 0.00 3.77
659 660 0.106619 TTTGTACGGTGGCCTTGGTT 60.107 50.000 3.32 0.00 0.00 3.67
660 661 0.111639 ATTTGTACGGTGGCCTTGGT 59.888 50.000 3.32 0.80 0.00 3.67
661 662 2.014128 CTATTTGTACGGTGGCCTTGG 58.986 52.381 3.32 0.00 0.00 3.61
662 663 2.676342 GTCTATTTGTACGGTGGCCTTG 59.324 50.000 3.32 0.00 0.00 3.61
663 664 2.303600 TGTCTATTTGTACGGTGGCCTT 59.696 45.455 3.32 0.00 0.00 4.35
664 665 1.903860 TGTCTATTTGTACGGTGGCCT 59.096 47.619 3.32 0.00 0.00 5.19
665 666 2.004733 GTGTCTATTTGTACGGTGGCC 58.995 52.381 0.00 0.00 0.00 5.36
666 667 2.928116 GAGTGTCTATTTGTACGGTGGC 59.072 50.000 0.00 0.00 0.00 5.01
667 668 3.119743 TCGAGTGTCTATTTGTACGGTGG 60.120 47.826 0.00 0.00 0.00 4.61
668 669 4.087510 TCGAGTGTCTATTTGTACGGTG 57.912 45.455 0.00 0.00 0.00 4.94
669 670 4.771590 TTCGAGTGTCTATTTGTACGGT 57.228 40.909 0.00 0.00 0.00 4.83
670 671 6.034591 AGATTTCGAGTGTCTATTTGTACGG 58.965 40.000 0.00 0.00 0.00 4.02
671 672 7.507672 AAGATTTCGAGTGTCTATTTGTACG 57.492 36.000 0.00 0.00 0.00 3.67
679 680 9.737427 GATCAGAATTAAGATTTCGAGTGTCTA 57.263 33.333 0.00 0.00 0.00 2.59
680 681 8.253810 TGATCAGAATTAAGATTTCGAGTGTCT 58.746 33.333 0.00 0.00 0.00 3.41
681 682 8.324567 GTGATCAGAATTAAGATTTCGAGTGTC 58.675 37.037 0.00 0.00 0.00 3.67
682 683 7.819415 TGTGATCAGAATTAAGATTTCGAGTGT 59.181 33.333 0.00 0.00 0.00 3.55
683 684 8.189709 TGTGATCAGAATTAAGATTTCGAGTG 57.810 34.615 0.00 0.00 0.00 3.51
684 685 8.824781 CATGTGATCAGAATTAAGATTTCGAGT 58.175 33.333 0.00 0.00 0.00 4.18
685 686 8.281194 CCATGTGATCAGAATTAAGATTTCGAG 58.719 37.037 0.00 0.00 0.00 4.04
686 687 7.986889 TCCATGTGATCAGAATTAAGATTTCGA 59.013 33.333 0.00 0.00 0.00 3.71
687 688 8.146479 TCCATGTGATCAGAATTAAGATTTCG 57.854 34.615 0.00 0.00 0.00 3.46
709 710 0.184211 CAGCCCATCCACATGATCCA 59.816 55.000 0.00 0.00 30.57 3.41
719 720 0.889186 ACACAACGTTCAGCCCATCC 60.889 55.000 0.00 0.00 0.00 3.51
785 801 4.553323 CCGGTTAATGCGTAGTTAGCTAT 58.447 43.478 0.00 0.00 35.28 2.97
926 942 2.359900 GTGAAATGGCTGGTCTGTAGG 58.640 52.381 0.00 0.00 0.00 3.18
928 944 1.985159 AGGTGAAATGGCTGGTCTGTA 59.015 47.619 0.00 0.00 0.00 2.74
937 953 2.044123 AGGAATCGAGGTGAAATGGC 57.956 50.000 0.00 0.00 0.00 4.40
1605 1659 4.876107 ACTAAACTCGGCATACAAATCAGG 59.124 41.667 0.00 0.00 0.00 3.86
1771 1831 3.187227 AGCTGTGTGAATTTGATCGTGTC 59.813 43.478 0.00 0.00 0.00 3.67
1808 1868 2.907910 GATGTGTTCATCTGGTGTGC 57.092 50.000 1.58 0.00 44.86 4.57
1830 1895 6.751888 GCAAAAGAAACTGTTAGTGTTGTGAT 59.248 34.615 0.00 0.00 0.00 3.06
1831 1896 6.072175 AGCAAAAGAAACTGTTAGTGTTGTGA 60.072 34.615 0.00 0.00 0.00 3.58
1832 1897 6.033831 CAGCAAAAGAAACTGTTAGTGTTGTG 59.966 38.462 0.00 0.00 0.00 3.33
1833 1898 6.092748 CAGCAAAAGAAACTGTTAGTGTTGT 58.907 36.000 0.00 0.00 0.00 3.32
1834 1899 6.092748 ACAGCAAAAGAAACTGTTAGTGTTG 58.907 36.000 0.00 0.00 41.78 3.33
1844 1909 5.343249 CAAGCAAGTACAGCAAAAGAAACT 58.657 37.500 12.08 0.00 0.00 2.66
1915 1980 4.021016 ACAGAAGGAACTGACCATCTACAC 60.021 45.833 0.00 0.00 40.86 2.90
1917 1982 4.464597 AGACAGAAGGAACTGACCATCTAC 59.535 45.833 0.00 0.00 40.86 2.59
1918 1983 4.464244 CAGACAGAAGGAACTGACCATCTA 59.536 45.833 0.00 0.00 40.86 1.98
1976 2055 6.597672 TCATTGTTGGACATAGATAACACCAC 59.402 38.462 0.00 0.00 33.25 4.16
1993 2080 4.345271 TGCTCGATCATGTTCATTGTTG 57.655 40.909 4.71 0.00 0.00 3.33
2049 2136 5.071788 AGTTGATTTGAGTAGTTCCAGTCCA 59.928 40.000 0.00 0.00 0.00 4.02
2056 2143 7.307455 GGTTCAGACAGTTGATTTGAGTAGTTC 60.307 40.741 0.00 0.00 0.00 3.01
2084 2171 4.937620 GCAACTGTCTCATCATTGTTCCTA 59.062 41.667 0.00 0.00 0.00 2.94
2194 2281 1.988467 GTTTACGGTTACTCTGGCGTC 59.012 52.381 0.00 0.00 0.00 5.19
2199 2286 0.986992 CGGCGTTTACGGTTACTCTG 59.013 55.000 0.00 0.00 40.23 3.35
2200 2287 0.109132 CCGGCGTTTACGGTTACTCT 60.109 55.000 6.01 0.00 46.03 3.24
2201 2288 2.362802 CCGGCGTTTACGGTTACTC 58.637 57.895 6.01 0.00 46.03 2.59
2202 2289 4.576993 CCGGCGTTTACGGTTACT 57.423 55.556 6.01 0.00 46.03 2.24
2276 2374 2.283086 CGTCTTCGCACAACTAAACACA 59.717 45.455 0.00 0.00 0.00 3.72
2296 2394 0.234884 GTTTGAAGACGTGAAGGCCG 59.765 55.000 0.00 0.00 0.00 6.13
2524 2624 3.191162 TGGGTTGATTTTCAGCTTCGATG 59.809 43.478 0.00 0.00 0.00 3.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.