>input_sequence_75531
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-----------------------------------------------------------ATGGCTCGCAAGAAGGTGGCC
ATCGAGTACATCGCGAGCGACCCGACCCGGAAGGCGACGGCGAGGAAGCGCGACATGGGGATCAAGAAGAAGGCCGGCGA
GCTGTCCGTGCTGTGCGGCGTCGACACGTGCTACATCATGTACCGCGAGGGCGGCGCCTCCCCGCCGGAGGTGTACCCGT
CGGTCCCGGAGGCGATGCGCGTCATCGACCGCTTCCGGTCCATGCCGGAGCTGGACCAGTGCAAGAAGAAGATGGACGGG
GAGGACTACGTCCGTGAGCGCATCGCCAAGATCCAGGAGCAGCTGCGCAGGGCGCAGCGCGACAACCGCCAGCTCGAGAC
CACGCTGCTCCTCCACGACACCCTCGTCGGCCGCCGCCAGGGCCTCGCCGGCGTTGCCATCGAGCAGCTCGTCAGCCTCG
GCTGGATGGCGGAGAGCTACGTCAAGAAGGTGAGCGACTGCATCGCGTACAGGAACATGCAGCAGCA-------------
--------------GCAGCACGCCGGCGTGCAGGCTGAGCCTCCGCATTACG---GTGCCACCGTCGCCGACATGGAGGC
GCCGCCGCACCAGCAGCTATAA----------------------------------------------------------
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>chr3D_1_TraesCS3D01G138400
AGACGGCCGCGAAGGTCGCAGAGTACACGTATTACCTCGAGGAGGACGAGGACGACTTCAGGATAGGGCTCTACTCACTA
ATCAGGGAGTGAAATGAGAGGCTGTCCCCGCCGTTCTTTTTTTTGCGGGATGTCCCGTCCGTTCCACCCTATGTTTGACG
AGGACAATGTCGTGACGGTTATATAGTATTTTTTAAGATGTCGTGATGATTATATTAAATTATGTACAAGCATGTCATTA
AGCTAATACTTTTACATTTTCCACTGAATTCTGGTTAGTAAGCTAGTACGTACTTTCTTGAATTCTCGGTGACGTCATTG
AGCTATAGCACTTCTCTGTACCCGCAAATCCCAGAAGTTTTAAACGTCAGTTGGACCCTAAGGTATTCCCTCCGTCCCAA
AATATAAGACGCTAAGACGCTATCATGATATCAAAAAACATCTTACATTTCAGGATGGAGGGAGTACTAAATGACTATAA
TTGCTTATACATAATCGTTATATTTTTTTAAAGATGTCGTGACCAATCTTCGGATTTAAAATTTCAAAACTGGTAGCAGT
AGATATAATCTCCTGGGTTCTTTTCAGACATGCTGACTCGACGACTTTTCTCTATATATACGATGGTACGAAAAATATTG
GCACATGATGCATCACGTCAACCAAGGCCACCGTACAAATAGACACTCGAAATCTTAATTCTGATCACATGGATCATGTG
G----ATGGGCTGAACGTTGTGTTCAGAC----------CTATGATCA-TCAGTAGACACGATAGGCCAGAAGATATGCT
ATAGCTAACTACGCATTAACCGGCACTAATTCAAGCGATCCTCATATCTGTCAGAATAATTCCTTTCCAATCACGTTGAT
GGCAGCAATCCCTCCACTCGATACTCCACTATAAGACCGCCATTCCATTGTCTCCCAAGTCCCTACAGACCAGCC----A
TTTCACCTCGATTCCTATCCTACCCATCTTCTTCCTCGCAGCGACCGGCGTCGACGTCCATGGCTCGCAAGAAGGTGGCC
ATCGAGTACATCGCGAGCGACCCGACCCGGAAGGCGACGGCGAGGAAGCGCGACATGGGGATCAAGAAGAAGGCCGGCGA
GCTGTCCGTGCTGTGCGGCGTCGACACGTGCTACATCATGTACCGCGAGGGCGGCGCCTCCCCGCCGGAGGTGTACCCGT
CGGTCCCGGAGGCGATGCGCGTCATCGACCGCTTCCGGTCCATGCCGGAGCTGGACCAGTGCAAGAAGAAGATGGACGGG
GAGGACTACGTCCGTGAGCGCATCGCCAAGATCCAGGAGCAGCTGCGCAGGGCGCAGCGCGACAACCGCCAGCTCGAGAC
CACGCTGCTCCTCCACGACACCCTCGTCGGCCGCCGCCAGGGCCTCGCCGGCGTTGCCATCGAGCAGCTCGTCAGCCTCG
GCTGGATGGCGGAGAGCTACGTCAAGAAGGTGAGCGACTGCATCGCGTACAGGAACATGCAGCAGCA-------------
--------------GCAGCACGCCGGCGTGCAGGCTGAGCCTCCGCATTACG---GTGCCACCGTCGCCGACATGGAGGC
GCCGCCGCACCAGCAGCTATAAATAAGA----CATACACCCTCTGGTCGGAAGTCCTTCCTGATTTGTATGCCGAGTTTA
GTACTCTTTAGGTTTGACTTTGGTACGTGATCTGCTTCCCTGTCACTCGAAGAAGAACAAAGCCTGCATTTCCTTGTTAA
A----ATGTTTACACGATCAAATTCAGTA-CAAACTGAAGCTGGAAGGGACAATCTTTGTTGAAAC-GTTGACACGATCA
AATTCACACAGCTTAATCGAGCTCACAG-----CACACCAGATGAACACATCACATCACAACACTAACAGTTTCTTTTGC
TGTACTTGCTTGCTGCTCCATCTTGAATTCTTGATCCAGGACTGAAGGGTGCCACACTAGTGT--------------AGA
TGGTCAGTTCCTTCTGTCTGCCACATCGAAGCAACCTGAAGATCACACATACACGTGG--------TGTTATCTATGTCC
AACAATGAACATGATCGAGCATGGTTGCAGAATGAATATATAAATTTCAAGTAATTGGACTGGAACTACTCAAATCAACT
GTCTGAACCATAGGAACAATGATGAGACAGTTGCTTACTGCAGAAAAGGTCGAGAAACCAGCGCTTGAATGGATTAGTTT
GTGCTCTGCTCACGTTGCTGCCTTGGTTTGCCTGCCAGAAGACGCCAGAGT-----------AACCGTAAACGCCGGTCC
TGTGATTTATTTCAAAACAAATAATTACAAGATGCAACAATGGAGAAAACCTGTGTGTTTAGTTGTGCGAAGACGGCCTT
CACGTCTTCAAACACCATGTCTGGCTGCCTGTCACCATCAACCTGAGGGGGCAGGACAGGACACAACCTCACAAGTCACA
TTTCTCATAAAAACCCACATGATGTCACCAAAACAAAAAGCATTTCTCATTATTGCATCTACATTATCATAATCTTCAGA
GTGAACGACCTTTGTATAATTATGTCGCTATTGAAAACTT--AATGTGTTTAGGGATCAGAAACATCGAAGCTGAAAATC
AACCCATAACTGTCCTCAGAAAATAAAAGGAG
>chr3B_703
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--------------------------------------------------------------GATCACACGGATCATGTT
GATGCATGGGCTGAACGTTGTGTTCAGACTGACATCTGCCTATGATCA-TCAGTAGACACGATAAGCCAGAAGATATGCT
GGAGCTAACTACGCATTAACCGGCACTAATTCAAGCGATCCTCATATCTGCCAGAATAATTCCTTTCCAATCACGCTGAT
GGCAGCAATCCCTCCACTCGATACTCCACTATAAGACCGCCATTCCATTGTCTCCCAAGTCGCAACAGACCAACC----A
TTTCACCTCGATTCCTATCCTACCCATCTTCTTCCTCGCGGCGACCGGCGT---CGTCCATGGCTCGCAAGAAGGTGGCC
ATCGAGTACATCGCGAGCGACCCGACCCGGAAGGCGACGGCGAGGAAGCGCGACATGGGGATCAAGAAGAAGGCCGGCGA
GCTGTCCGTCCTGTGCGGCGTCGACACGTGCTACATCATGTACCGCGAGGGCGGGGCCTCCCCGCCGGAGGTGTACCCGT
CGGTCCCGGAGGCGATGCGCGTCATCGACCGCTTCAGGGCCATGCCGGAGCTGGACCAGTGCAAGAAGAAGATGGACGGG
GAGGACTACGTCCGGGAGCGCATCGCCAAGATCCAGGAGCAGCTGCGCAGGGCGCAGCGCGACAACCGCCAGCTCGAGAC
CACGCTGCTCCTCCACGACGCCCTGGTCGGCCGCCGCCAGGGCCTCGCCGGCGTCGCCATCGAGCAGCTCGTCAGCCTCG
GCTGGATGGCGGAGAGCTACGTCAAGAAGGTGAGCGACTGCATCGCGTACAGGAGCATGCAGCAGCAGCCGCAGCCGCA-
-----------GCTGCAGCACGCCGGCGTGCAGGCTGAGCCGCCGCATTACG---CTGCCGCCGTCGCCGACGTGGAGGC
GCCGCCGCACCAGCAGTTATAAATAAGA----CACACGCCCTCTGGTCCTTCCCGATTT----TTTGTATGCCGAGTTTA
GTACTCTTTAGGTTTGACTTTGGTACGTGATCTGCTTCCCTGTCACTCGAAGAAGAACAAAGCCTGCATTTCCTTGTTAA
A----ATGTTTACACGATCAAATTCAGTA-CAAACTGAAGCTGGAAGGGACAATCTTTGCTGAAAT-GTTTGCACG-TCA
AATTCACACAGCTTAATCGAGCTCACAACACACCA-----GATGAACACATCAC-----AACACTAACGGTTTCTTTTGC
TGTGCTTGCTTGCTGCTCCATCTTGAATTCTTGATCCAGGACTGAAGGGTACCACACTAATTAAACATCTCTTTAGAAGA
TGGTCAGTTCCTTCTGTCTGCCACATCGAAGCAACCTGAAGATCACACATACACTTGCTGTCAGCCTGTCGTTCATGTCG
AACAGCGAACATGGTC--GCATGGTTGCCGACTGAATATATAAATTTCAAGCAATCGGACTGAAACCACTCAAATCAACT
GTAGAC---------ACCATGATGAAAGAGTTGCTTACTGCAGAATATGTCAAGAAACCAGCTCTTGAATGGATTAGTTT
GTGCTCTGCTCACGTTGCTGCCTTGGTTTGCCTGACAGAAAACGCAGA-----------GTAAACCGTAAACGCCGATCC
TGTGATTTATTTCAAAACAAATATTTACAAGATGCAACAATGGAGAAAACCTGAGTGTTTAGTTGCGCGAAGATGGCCTT
CACGTCTTCAAACACCATGTCTGGCTGCCTGTCACCATCAACCTGAGGGGGCGGGACAGGACACAACCTCACAAGTCACA
TTTCTCATAAAAAACCACATGATGTCACCAAAACAAAAAGCATTTCTCATTATTGCATCTACATTATCATAATCTTCAGA
GTGAACGAACTTTGTATAATTATGTCGCTATTGAAAACTTCAAATGAGTTTAGGGATCAGAAAAATCGAAGCTGAAAATC
AACCCATAACTGTCCTGAGAAAATAAAATGAG
>chr3A_745
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----------------------------C----------CTATGATCATTCAGCAGACACGATAGGTCAGAAGATATGCT
GTAGCTAACTACGCATTAACCGGCACTAATTCAAGCGATCCTCATATCTGTCAGAATAATCCCTTTCCAATCACGTCGAT
GGCAGCGATCCCTCCACTCGATACTCCACTATAAGACCGCCATTCCGTTGTCTCCCAAGCCGCAGCAGGCCAACCATATA
TTTCACCTCGATTCCTACACCGC----CTTCTTCCTCGCGGCGACCGGCGTCGACGTCCATGGCTCGCAAGAAGGTGGCC
ATCGAGTACATCGCGAGCGACCCGACCCGGAAGGCGACGGCGAGGAAGCGCGACATGGGGATCAAGAAGAAGGCCGGGGA
GCTGTCGGTGCTGTGCGGCGTGGACACGTGCTACATCATGTACCGCGAGGGCGGGGCCTCCCCGCCGGAGGTGTACCCGT
CGGTCCCGGAGGCGATGCGCGTCATCGACCGCTTCAGGGCCATGCCGGAGCTGGACCAGTGCAAGAAGAAGATGGACGGG
GAGGACTACGTCCGGGAGCGCATCGCCAAGATCCAGGAGCAGCTGCGCAGGGCGCAGCGCGACAACCGCCAGCTCGAGAC
CATGCTGCTCCTCCACGACGCTCTGGCCGGCCGCCGTCAGGGCCTTGCCGGCGTCGCCATCGAGCAGCTCGTCAGCCTGG
GCTGGATGGCGGAGAGCTACGTCAAGAAGGTGAGCGACTGCATCGCGTACAGGAGCATGCAGCAGCAGCAGCAGCAGCAG
CTGCTGCTGCCGCTGCAGCACGCCGGCGTGCAGGCTGAGCCGCCGCATTACGCCGCTGCCACAGTCGCCGGCGTGGAGG-
--CGCCGCACCAGCAGTTATAAATAGAACACCCACACGCCCTCGGGTCGGAAGTCCTTTCTGATATGTC---------TA
GTAATCTTTAGG------TTTGGTACGTGATCTGTCTCCCTGTCGCTCGTAGAAGGACAAAGCCTGCGTTTCTTTGTTAA
CAAACATGTTTACACGATCAAATTCAGTAACAAACTGCAGCTGGACGGGGTTCTCTTTTGTTAAAATGTTTACACAATGA
AATGCACACAGCTCAATCGAGCTCACAACACAACACACCGGATGAACACATCAG-----AACACTAACGGTTTCTTTTGC
TGTACCTGCTTGCTGCTCCATCTTGAATTCTTGATCCAGGACTGAAGGGCGCCACACTAATTAAACATCTCTGTAGAAGA
TGGTCAGTTCCTTCTGTCTTGCAAATCGAAGCAACCTGAAGGTCAAACATACACCTGG--------TGTCAATCATGTCG
AACAATGAACATGATCGAGCATGGTTGCAGACTGAATATATAAATTTCAAGTAACCGGACTGAAGCTACTCAAATCAATT
GTCTGAACCACAGGAACAATCATGAAACAGTTGCTTACTGCAGAAAAGGTCGAGAAACCAACGCTTGAATGGATTAATTT
GTGCTCTGCTTATGTTGCTGCCTTCGTTTGCCTACCAAAGACGCCAGAGTAAGACGCGGGTAAACCGTAAACGCCGATCC
CATGATTTATTTCAAAATTAATAACTACAAGATGCAACAATGGATATAACCTGAGTGTTTAGTTGCGCGAAGATGGCCTT
CACGTCTTCGAACACCATGTCTGGCTGCCTGTCACCATCAACCTGAGGGGGCAGGACAGGAAGCAACCTCACAAGTCACA
ATTCTCATAAAAACCCACATGATGTCACCAAAACAAGAA-CATTTCTTATTATTGCATCTACATTATCATAATCTTCACA
GTGTACGAACTTCGTATAACTATGTCGGTATTGAAAACTTCAAATGTGTTTTGGGCTCACAAAAATCGAAGCTGAAAATC
AACATAACTATTT-CTCTGAAAATAA------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S---------S
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S-------------------------------------------------------------------------------
-------------------------------------------------------------S-S--------S-------
---------------------------------------S----------------------------------------
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------------------------------------------------------S-------------------------
-----------------------------------S--S-----------------------------------------
--------------S-----------------------------------------------------------------
-------------------S----S-----------------------------S-------------------------
------------------------------------------------------S-------------------------
-----------------------------------------S-------------S----------------S-------
----------------S-----------------S--S--------------------S---------------------
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-----------------------------------------------------------S-----S----S---------
---------------------------S-----------S--------------SSSSS---------S-----------
-----------------------------------------------------------S-SS-----------------
------------------------------------------------------S--------------S--SS-----S
-------------------------------S-----------------------S------S-----------------
----------S--------------S------------------------------------------------------
----------------------------------------S----SSSSSS-------------------------S---
-----------------------------------------------------S-----------S-------S------
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--------S------------------------------------------------------S----------------
----------------------------S---
>forward_179
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-------------------------------------------------------------------------------G
AGGACAATGTCGTGACGGT-------------------------------------------------------------
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>reverse_1868
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---------------------------GCACACCAGATGAACACATC---------------------------------
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