Multiple sequence alignment - TraesCS3D01G137800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G137800 chr3D 100.000 5451 0 0 1 5451 96390729 96396179 0.000000e+00 10067.0
1 TraesCS3D01G137800 chr3D 89.913 575 23 7 1 572 96365511 96366053 0.000000e+00 708.0
2 TraesCS3D01G137800 chr3D 97.619 42 1 0 424 465 332634732 332634773 7.570000e-09 73.1
3 TraesCS3D01G137800 chr3B 96.264 4765 135 21 707 5450 147543458 147548200 0.000000e+00 7773.0
4 TraesCS3D01G137800 chr3B 95.000 340 14 1 1 337 147542765 147543104 1.040000e-146 531.0
5 TraesCS3D01G137800 chr3B 93.438 320 16 1 388 707 147543102 147543416 2.300000e-128 470.0
6 TraesCS3D01G137800 chr3B 80.714 140 20 6 4544 4681 764524371 764524237 9.660000e-18 102.0
7 TraesCS3D01G137800 chr3A 93.570 3577 212 5 707 4270 114422641 114426212 0.000000e+00 5315.0
8 TraesCS3D01G137800 chr3A 84.065 797 87 31 4676 5448 114426332 114427112 0.000000e+00 732.0
9 TraesCS3D01G137800 chr3A 90.213 235 21 2 1 234 114422008 114422241 6.860000e-79 305.0
10 TraesCS3D01G137800 chr3A 91.716 169 14 0 538 706 114422430 114422598 9.130000e-58 235.0
11 TraesCS3D01G137800 chr2A 92.308 39 3 0 424 462 23951687 23951649 7.630000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G137800 chr3D 96390729 96396179 5450 False 10067.000000 10067 100.000000 1 5451 1 chr3D.!!$F2 5450
1 TraesCS3D01G137800 chr3D 96365511 96366053 542 False 708.000000 708 89.913000 1 572 1 chr3D.!!$F1 571
2 TraesCS3D01G137800 chr3B 147542765 147548200 5435 False 2924.666667 7773 94.900667 1 5450 3 chr3B.!!$F1 5449
3 TraesCS3D01G137800 chr3A 114422008 114427112 5104 False 1646.750000 5315 89.891000 1 5448 4 chr3A.!!$F1 5447

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
518 523 0.176680 ATAACCAGCGAGGCAGTGAG 59.823 55.000 0.00 0.0 43.14 3.51 F
1207 1303 0.445436 CGTGAACCTGCAGATTCAGC 59.555 55.000 24.26 16.6 35.55 4.26 F
2217 2313 0.324645 ATGACAGTGGAATTGCCCCC 60.325 55.000 0.00 0.0 34.97 5.40 F
3140 3236 1.134401 ACCTAATGCCGTGACCATGAG 60.134 52.381 0.00 0.0 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1392 1488 0.178967 TCAGCACCAATTTCTGCCCA 60.179 50.000 1.22 0.0 33.57 5.36 R
2979 3075 2.205022 TCAACCTTGCTTCCTCCATG 57.795 50.000 0.00 0.0 0.00 3.66 R
3298 3394 1.405105 GCTGCTCAACCTGTCAAACAA 59.595 47.619 0.00 0.0 0.00 2.83 R
4986 5123 0.251922 ATCAGTGCCATGTTTGCCCT 60.252 50.000 0.00 0.0 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
187 188 2.510238 AGCGCGATGGAGAGCAAC 60.510 61.111 12.10 0.00 39.42 4.17
279 283 5.409826 GAGGTTTTCTCATCAGTGGTTACTG 59.590 44.000 1.12 1.12 46.47 2.74
359 363 1.734465 CCACTCGGTCAGATTGAAAGC 59.266 52.381 0.00 0.00 31.90 3.51
433 437 6.826741 GCCTGTTTTGTACTCCTATCCATTTA 59.173 38.462 0.00 0.00 0.00 1.40
448 452 8.230486 CCTATCCATTTATGCGACAAGTAATTC 58.770 37.037 0.00 0.00 0.00 2.17
451 455 3.936902 TTATGCGACAAGTAATTCGGC 57.063 42.857 0.00 0.00 35.73 5.54
466 470 4.672251 GGCACGGAGGGAGTAGTA 57.328 61.111 0.00 0.00 0.00 1.82
514 519 2.604046 AAGTATAACCAGCGAGGCAG 57.396 50.000 0.00 0.00 43.14 4.85
518 523 0.176680 ATAACCAGCGAGGCAGTGAG 59.823 55.000 0.00 0.00 43.14 3.51
560 602 6.757947 ACACTGACCTTGATGAAAATGTTTTG 59.242 34.615 0.00 0.00 0.00 2.44
622 664 0.464373 TGGAGAGCAAATGATCCGGC 60.464 55.000 0.00 0.00 34.39 6.13
645 687 2.744768 GCCGCTTTTCGCAGAGGAG 61.745 63.158 3.58 0.00 38.43 3.69
648 690 1.499502 GCTTTTCGCAGAGGAGTGC 59.500 57.895 0.00 0.00 38.43 4.40
676 718 1.456296 TGGTGATGCTGCATGAGAAC 58.544 50.000 21.53 12.04 0.00 3.01
775 859 4.742440 GCCACACGGAGATGGTAAATGATA 60.742 45.833 0.00 0.00 39.02 2.15
776 860 4.750098 CCACACGGAGATGGTAAATGATAC 59.250 45.833 0.00 0.00 33.74 2.24
777 861 4.750098 CACACGGAGATGGTAAATGATACC 59.250 45.833 0.00 0.00 38.07 2.73
778 862 3.987868 CACGGAGATGGTAAATGATACCG 59.012 47.826 0.00 0.00 40.39 4.02
779 863 3.893200 ACGGAGATGGTAAATGATACCGA 59.107 43.478 0.00 0.00 40.39 4.69
791 875 4.753516 ATGATACCGACAGTCCATGAAA 57.246 40.909 0.00 0.00 0.00 2.69
798 882 4.153475 ACCGACAGTCCATGAAATTTTACG 59.847 41.667 0.00 0.00 0.00 3.18
822 906 3.782656 ACACCCTCGTTAGAAAATGGT 57.217 42.857 0.00 0.00 0.00 3.55
824 908 3.326880 ACACCCTCGTTAGAAAATGGTCT 59.673 43.478 0.00 0.00 0.00 3.85
855 939 1.561643 TCGATGGAGCAGAAAGGACT 58.438 50.000 0.00 0.00 0.00 3.85
879 963 6.898041 TGTAGCTAACATGTGTCATTTTGTC 58.102 36.000 0.00 0.00 31.43 3.18
894 978 6.915843 GTCATTTTGTCAGTTTTACGGAATGT 59.084 34.615 0.00 0.00 0.00 2.71
942 1026 4.068599 GCCTAATCCAGAAAGCTATCCAC 58.931 47.826 0.00 0.00 0.00 4.02
1207 1303 0.445436 CGTGAACCTGCAGATTCAGC 59.555 55.000 24.26 16.60 35.55 4.26
1392 1488 4.647564 AGATGGAATGGACAGTGTTCTT 57.352 40.909 2.55 0.00 0.00 2.52
1416 1512 3.382546 GGCAGAAATTGGTGCTGATGTAT 59.617 43.478 11.07 0.00 39.76 2.29
1458 1554 2.887152 GAGTGCAAGAAGGGTGTTTGAT 59.113 45.455 0.00 0.00 0.00 2.57
1476 1572 6.265196 TGTTTGATGAAATGCCTCAAGTAAGT 59.735 34.615 0.00 0.00 31.11 2.24
1578 1674 2.669569 CACTGCTGTGGGGTTCGG 60.670 66.667 15.43 0.00 40.33 4.30
1626 1722 3.888323 TCTTGAAGTGCATTGCTGGTTTA 59.112 39.130 10.49 0.00 0.00 2.01
1719 1815 3.101437 TGGAAATGCATTGATGGCTCTT 58.899 40.909 13.82 0.00 0.00 2.85
2217 2313 0.324645 ATGACAGTGGAATTGCCCCC 60.325 55.000 0.00 0.00 34.97 5.40
2244 2340 1.876799 CACACCGTTTCATGCCTTGTA 59.123 47.619 0.00 0.00 0.00 2.41
2545 2641 4.829064 TCAGCCACATTGTTAAGTGTTC 57.171 40.909 0.00 0.00 33.99 3.18
2585 2681 1.750682 GCGCCATTGGTTTCTAGGGAT 60.751 52.381 4.26 0.00 0.00 3.85
2883 2979 4.260538 GCTGGTAATGAATCGCTGAAAGAG 60.261 45.833 0.00 0.00 34.07 2.85
2979 3075 5.288472 GGAAATGTATGCGAAATGTGGAAAC 59.712 40.000 0.00 0.00 0.00 2.78
3014 3110 3.511146 AGGTTGATTTTTGATGGCGTGAT 59.489 39.130 0.00 0.00 0.00 3.06
3025 3121 2.602257 TGGCGTGATGAGTAAGGATG 57.398 50.000 0.00 0.00 0.00 3.51
3054 3150 4.284490 TCATGGAATACACTGATAGGAGGC 59.716 45.833 0.00 0.00 0.00 4.70
3140 3236 1.134401 ACCTAATGCCGTGACCATGAG 60.134 52.381 0.00 0.00 0.00 2.90
3298 3394 1.949847 ATTGCTGCTAGCTCGACGGT 61.950 55.000 17.23 0.00 42.97 4.83
3515 3611 0.457681 TTCTTCGATGCGATGCGTCA 60.458 50.000 6.75 0.00 43.95 4.35
3741 3837 0.547075 TGGAACCTGAAAACACCGGA 59.453 50.000 9.46 0.00 0.00 5.14
3842 3938 0.173708 CGAGGACTCCGGGAGAAAAG 59.826 60.000 30.13 12.83 33.32 2.27
3978 4074 0.846427 AGGAAGAAGGCCATGACCCA 60.846 55.000 5.01 0.00 0.00 4.51
4375 4483 2.656002 TCACAACGTTTGGGGAAATGA 58.344 42.857 0.00 0.00 33.95 2.57
4385 4493 1.604147 GGGGAAATGACTTTGGCCCG 61.604 60.000 0.00 0.00 34.85 6.13
4387 4495 0.610785 GGAAATGACTTTGGCCCGGA 60.611 55.000 0.73 0.00 0.00 5.14
4394 4502 1.893137 GACTTTGGCCCGGATCTTTTT 59.107 47.619 0.73 0.00 0.00 1.94
4405 4513 2.415893 CGGATCTTTTTGCGCAGGATTT 60.416 45.455 11.31 0.00 0.00 2.17
4433 4541 2.186243 TCAAGATTCTGGAGAGCTGCT 58.814 47.619 0.00 0.00 0.00 4.24
4462 4570 6.556495 AGAATCTGCATTAGGATCCTAGTGAA 59.444 38.462 36.04 28.88 38.14 3.18
4463 4571 6.753913 ATCTGCATTAGGATCCTAGTGAAA 57.246 37.500 36.04 25.07 38.14 2.69
4464 4572 6.560003 TCTGCATTAGGATCCTAGTGAAAA 57.440 37.500 36.04 18.97 38.14 2.29
4465 4573 6.957631 TCTGCATTAGGATCCTAGTGAAAAA 58.042 36.000 36.04 20.34 38.14 1.94
4466 4574 6.823689 TCTGCATTAGGATCCTAGTGAAAAAC 59.176 38.462 36.04 22.84 38.14 2.43
4467 4575 6.721318 TGCATTAGGATCCTAGTGAAAAACT 58.279 36.000 36.04 7.60 43.40 2.66
4468 4576 6.599244 TGCATTAGGATCCTAGTGAAAAACTG 59.401 38.462 36.04 16.24 40.26 3.16
4469 4577 6.823689 GCATTAGGATCCTAGTGAAAAACTGA 59.176 38.462 36.04 14.43 40.26 3.41
4470 4578 7.336931 GCATTAGGATCCTAGTGAAAAACTGAA 59.663 37.037 36.04 15.77 40.26 3.02
4475 4583 7.944554 AGGATCCTAGTGAAAAACTGAAAATCA 59.055 33.333 14.27 0.00 40.26 2.57
4492 4600 8.737168 TGAAAATCAATAGGTGTATTCTCCTG 57.263 34.615 3.42 0.00 37.97 3.86
4507 4615 4.402056 TCTCCTGTCTGAAACGTTTTCT 57.598 40.909 15.89 0.00 0.00 2.52
4594 4702 4.581309 TCTCCAGAATTCTGCCAAGATT 57.419 40.909 27.01 0.00 42.47 2.40
4598 4706 3.181493 CCAGAATTCTGCCAAGATTTCCG 60.181 47.826 27.01 7.59 40.99 4.30
4606 4714 2.030007 TGCCAAGATTTCCGAAGCAAAG 60.030 45.455 0.00 0.00 0.00 2.77
4612 4720 2.234300 TTTCCGAAGCAAAGTCGAGT 57.766 45.000 0.00 0.00 41.02 4.18
4633 4741 8.983724 TCGAGTTCTTTTGTTTTGTTGATTTTT 58.016 25.926 0.00 0.00 0.00 1.94
4708 4816 8.548721 AGAAACAACAGTTACAATTCTACGAAG 58.451 33.333 0.00 0.00 0.00 3.79
4886 4994 5.924254 TCAGTACCACATAACTTTTGTCTCG 59.076 40.000 0.00 0.00 0.00 4.04
4916 5024 0.322975 TGGTTTCTGCAGAGCCTCTC 59.677 55.000 28.23 14.22 0.00 3.20
4986 5123 6.173339 GGTTCATATGAAAAGACAGGAGTCA 58.827 40.000 19.55 0.00 40.42 3.41
5075 5213 0.861837 CCGCGCATTTCTCCATCTAC 59.138 55.000 8.75 0.00 0.00 2.59
5076 5214 1.570813 CGCGCATTTCTCCATCTACA 58.429 50.000 8.75 0.00 0.00 2.74
5077 5215 1.933181 CGCGCATTTCTCCATCTACAA 59.067 47.619 8.75 0.00 0.00 2.41
5165 5303 4.320935 GCAGTACACAACCAATTTACCTGG 60.321 45.833 0.00 0.00 40.05 4.45
5232 5372 9.899661 ATGGCATAGTAACTAACAAAGTATTGA 57.100 29.630 0.00 0.00 37.50 2.57
5403 5564 3.200483 GTCGTTACCACCTGAAACAAGT 58.800 45.455 0.00 0.00 0.00 3.16
5450 5611 5.141182 TGAAAATGCCCTGTTAAGTGGTTA 58.859 37.500 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
187 188 1.825090 TTTGGTAGCACCTGCAGATG 58.175 50.000 17.39 10.34 45.16 2.90
318 322 3.057946 GGCAGTTCACTGGAAATCACTTC 60.058 47.826 9.01 0.00 43.94 3.01
359 363 4.720649 TCCTCTCTTGGTTTCAGTATCG 57.279 45.455 0.00 0.00 0.00 2.92
433 437 1.396996 GTGCCGAATTACTTGTCGCAT 59.603 47.619 0.00 0.00 35.93 4.73
448 452 0.822532 ATACTACTCCCTCCGTGCCG 60.823 60.000 0.00 0.00 0.00 5.69
451 455 5.558818 ACATACTATACTACTCCCTCCGTG 58.441 45.833 0.00 0.00 0.00 4.94
514 519 2.878406 TGTTTAAGCTCCTTGTGCTCAC 59.122 45.455 0.00 0.00 40.22 3.51
518 523 2.618709 AGTGTGTTTAAGCTCCTTGTGC 59.381 45.455 0.00 0.00 0.00 4.57
560 602 9.530633 ACATTGTAGTTATCTCCTTTTCGATAC 57.469 33.333 0.00 0.00 0.00 2.24
645 687 1.063174 GCATCACCAAATCTCTCGCAC 59.937 52.381 0.00 0.00 0.00 5.34
648 690 1.329906 GCAGCATCACCAAATCTCTCG 59.670 52.381 0.00 0.00 0.00 4.04
676 718 3.044873 AGAGAGGAGAAATGGGAGGAG 57.955 52.381 0.00 0.00 0.00 3.69
775 859 4.153475 CGTAAAATTTCATGGACTGTCGGT 59.847 41.667 1.07 0.00 0.00 4.69
776 860 4.153475 ACGTAAAATTTCATGGACTGTCGG 59.847 41.667 1.07 0.00 0.00 4.79
777 861 5.277601 ACGTAAAATTTCATGGACTGTCG 57.722 39.130 1.07 0.00 0.00 4.35
778 862 8.071368 TGTTTACGTAAAATTTCATGGACTGTC 58.929 33.333 21.67 0.00 0.00 3.51
779 863 7.858879 GTGTTTACGTAAAATTTCATGGACTGT 59.141 33.333 21.67 0.00 0.00 3.55
791 875 6.454795 TCTAACGAGGGTGTTTACGTAAAAT 58.545 36.000 21.67 6.52 38.00 1.82
798 882 5.471116 ACCATTTTCTAACGAGGGTGTTTAC 59.529 40.000 0.00 0.00 33.32 2.01
855 939 6.484977 TGACAAAATGACACATGTTAGCTACA 59.515 34.615 0.00 0.00 41.97 2.74
879 963 2.747446 CCCCTCACATTCCGTAAAACTG 59.253 50.000 0.00 0.00 0.00 3.16
942 1026 1.008538 GCGTGGTTTGGTCTTGCAG 60.009 57.895 0.00 0.00 0.00 4.41
1014 1110 2.421399 GCTGGAAATGGAGGCTGCC 61.421 63.158 11.65 11.65 0.00 4.85
1017 1113 1.000396 GTGGCTGGAAATGGAGGCT 60.000 57.895 0.00 0.00 35.81 4.58
1182 1278 1.734477 CTGCAGGTTCACGTCGGAG 60.734 63.158 5.57 0.00 0.00 4.63
1224 1320 2.358737 AAAGCCTCCGCCAAGTCG 60.359 61.111 0.00 0.00 34.57 4.18
1290 1386 3.429080 CTCCGAGCAGAGCTGGAGC 62.429 68.421 17.92 0.00 42.28 4.70
1369 1465 5.091261 AGAACACTGTCCATTCCATCTAC 57.909 43.478 0.00 0.00 0.00 2.59
1392 1488 0.178967 TCAGCACCAATTTCTGCCCA 60.179 50.000 1.22 0.00 33.57 5.36
1416 1512 1.410932 CCCAAGTCCCCACACTTCAAA 60.411 52.381 0.00 0.00 34.17 2.69
1458 1554 5.181811 CACATCACTTACTTGAGGCATTTCA 59.818 40.000 0.00 0.00 30.18 2.69
1476 1572 0.943673 CAGTCCAAACACGCACATCA 59.056 50.000 0.00 0.00 0.00 3.07
1578 1674 1.373590 AAATGGTGTATGCGTCCGGC 61.374 55.000 0.00 0.00 43.96 6.13
1626 1722 2.134287 ACCATCCGCGATACTGCCT 61.134 57.895 8.23 0.00 0.00 4.75
1719 1815 3.735591 GTTACAGCCACACCTTGAGTAA 58.264 45.455 0.00 0.00 0.00 2.24
1932 2028 2.989840 CACTCTTCCAACAAGCTCGTAG 59.010 50.000 0.00 0.00 0.00 3.51
2244 2340 6.365247 CACTATACAAACTAGTGACGCACTTT 59.635 38.462 15.81 4.90 45.82 2.66
2585 2681 7.727578 TTCACAGAATACCCATGAACTACTA 57.272 36.000 0.00 0.00 0.00 1.82
2643 2739 9.694520 CAATTTGAGTACATATCAAGAAGAACG 57.305 33.333 0.00 0.00 37.91 3.95
2883 2979 4.801891 CATATGCATGTACAGATTTGCCC 58.198 43.478 10.16 0.00 34.20 5.36
2941 3037 4.032703 ACATTTCCATTAGCGCATTGAC 57.967 40.909 11.47 0.00 0.00 3.18
2942 3038 5.761003 CATACATTTCCATTAGCGCATTGA 58.239 37.500 11.47 0.00 0.00 2.57
2979 3075 2.205022 TCAACCTTGCTTCCTCCATG 57.795 50.000 0.00 0.00 0.00 3.66
3014 3110 7.616528 TTCCATGATATCACATCCTTACTCA 57.383 36.000 7.78 0.00 0.00 3.41
3025 3121 8.753133 TCCTATCAGTGTATTCCATGATATCAC 58.247 37.037 7.78 0.00 34.91 3.06
3054 3150 5.296151 TGGCAAGATTATTCCTGGAGTAG 57.704 43.478 0.00 0.00 0.00 2.57
3140 3236 3.207669 CGGCAGGAAGGATGCAGC 61.208 66.667 0.00 0.00 45.68 5.25
3298 3394 1.405105 GCTGCTCAACCTGTCAAACAA 59.595 47.619 0.00 0.00 0.00 2.83
3515 3611 3.118112 CCTGGGCTCTATTCTGTGTTCAT 60.118 47.826 0.00 0.00 0.00 2.57
3741 3837 4.890088 TGTTGGCAAGAAGAACGTAGTAT 58.110 39.130 0.00 0.00 45.00 2.12
3842 3938 1.654954 CTCAATCCAGCTGCAGCCAC 61.655 60.000 34.39 8.53 43.38 5.01
4256 4352 6.042777 TCACTAATTACTGTCACATAGCAGC 58.957 40.000 0.00 0.00 36.26 5.25
4343 4439 5.277779 CCAAACGTTGTGATTGTGATACAGT 60.278 40.000 0.00 0.00 0.00 3.55
4375 4483 1.618343 CAAAAAGATCCGGGCCAAAGT 59.382 47.619 4.39 0.00 0.00 2.66
4385 4493 2.947448 AATCCTGCGCAAAAAGATCC 57.053 45.000 13.05 0.00 0.00 3.36
4387 4495 3.006752 TGGAAAATCCTGCGCAAAAAGAT 59.993 39.130 13.05 8.80 37.46 2.40
4394 4502 1.745087 GATTCTGGAAAATCCTGCGCA 59.255 47.619 10.98 10.98 37.46 6.09
4426 4534 1.008329 GCAGATTCTGTGAGCAGCTC 58.992 55.000 16.21 16.21 42.29 4.09
4433 4541 4.657504 AGGATCCTAATGCAGATTCTGTGA 59.342 41.667 14.27 3.10 33.43 3.58
4447 4555 9.807921 ATTTTCAGTTTTTCACTAGGATCCTAA 57.192 29.630 21.93 6.76 32.76 2.69
4464 4572 9.178758 GGAGAATACACCTATTGATTTTCAGTT 57.821 33.333 0.00 0.00 0.00 3.16
4465 4573 8.552296 AGGAGAATACACCTATTGATTTTCAGT 58.448 33.333 0.00 0.00 35.44 3.41
4466 4574 8.834465 CAGGAGAATACACCTATTGATTTTCAG 58.166 37.037 0.00 0.00 35.44 3.02
4467 4575 8.328758 ACAGGAGAATACACCTATTGATTTTCA 58.671 33.333 0.00 0.00 35.44 2.69
4468 4576 8.738645 ACAGGAGAATACACCTATTGATTTTC 57.261 34.615 0.00 0.00 35.44 2.29
4469 4577 8.552296 AGACAGGAGAATACACCTATTGATTTT 58.448 33.333 0.00 0.00 35.44 1.82
4470 4578 7.989741 CAGACAGGAGAATACACCTATTGATTT 59.010 37.037 0.00 0.00 35.44 2.17
4475 4583 7.331791 GTTTCAGACAGGAGAATACACCTATT 58.668 38.462 0.00 0.00 35.44 1.73
4481 4589 4.866508 ACGTTTCAGACAGGAGAATACA 57.133 40.909 0.00 0.00 0.00 2.29
4492 4600 5.034797 CCCTCAAAAGAAAACGTTTCAGAC 58.965 41.667 15.01 6.67 0.00 3.51
4507 4615 3.943671 TTCTGGACAACTCCCTCAAAA 57.056 42.857 0.00 0.00 35.34 2.44
4594 4702 2.132762 GAACTCGACTTTGCTTCGGAA 58.867 47.619 0.00 0.00 37.09 4.30
4598 4706 4.909894 ACAAAAGAACTCGACTTTGCTTC 58.090 39.130 0.75 0.00 37.59 3.86
4606 4714 7.506296 AATCAACAAAACAAAAGAACTCGAC 57.494 32.000 0.00 0.00 0.00 4.20
4633 4741 1.362584 TCTGGAGAATCTGGGGTCTGA 59.637 52.381 0.00 0.00 33.73 3.27
4665 4773 3.876309 TTCTTACAAAGGCCCAGTTCT 57.124 42.857 0.00 0.00 0.00 3.01
4916 5024 5.469760 TGGTGAAATGACAGTACATGACTTG 59.530 40.000 0.00 0.00 35.64 3.16
4986 5123 0.251922 ATCAGTGCCATGTTTGCCCT 60.252 50.000 0.00 0.00 0.00 5.19
5077 5215 9.408648 CCAAGGTGGTCAAAGTATATAATTTCT 57.591 33.333 5.22 0.00 31.35 2.52
5230 5370 6.472016 TGTCTTTTGATATGGCACTAACTCA 58.528 36.000 0.00 0.00 0.00 3.41
5231 5371 6.985188 TGTCTTTTGATATGGCACTAACTC 57.015 37.500 0.00 0.00 0.00 3.01
5232 5372 7.944729 ATTGTCTTTTGATATGGCACTAACT 57.055 32.000 0.00 0.00 0.00 2.24
5260 5421 9.533253 CATCACTAGACCTTCAATTTTGTTTTT 57.467 29.630 0.00 0.00 0.00 1.94
5283 5444 9.727627 GATATTGATGTGAAGAAAAAGGTCATC 57.272 33.333 0.00 0.00 0.00 2.92
5403 5564 4.131596 CGTTTGGTGAGAAGGGAAAGTTA 58.868 43.478 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.