Multiple sequence alignment - TraesCS3D01G135800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G135800 chr3D 100.000 3483 0 0 1 3483 94716012 94719494 0.000000e+00 6433
1 TraesCS3D01G135800 chr3D 81.136 1039 118 44 596 1578 600259900 600260916 0.000000e+00 761
2 TraesCS3D01G135800 chr3D 87.500 544 57 4 2080 2623 94761320 94760788 4.940000e-173 617
3 TraesCS3D01G135800 chr3D 86.429 420 42 8 1572 1977 94761750 94761332 2.470000e-121 446
4 TraesCS3D01G135800 chr3D 83.127 403 45 14 37 427 600259070 600259461 2.570000e-91 346
5 TraesCS3D01G135800 chr3D 91.111 90 2 4 120 206 600169272 600169358 2.200000e-22 117
6 TraesCS3D01G135800 chr3A 88.688 831 62 18 2674 3478 549267942 549267118 0.000000e+00 985
7 TraesCS3D01G135800 chr3A 87.776 589 57 7 1994 2579 549268529 549267953 0.000000e+00 675
8 TraesCS3D01G135800 chr3A 83.981 412 49 15 1572 1979 549268899 549268501 2.540000e-101 379
9 TraesCS3D01G135800 chr3B 88.509 818 59 18 2692 3478 145365323 145364510 0.000000e+00 957
10 TraesCS3D01G135800 chr3B 81.438 1029 116 40 596 1569 807381812 807382820 0.000000e+00 773
11 TraesCS3D01G135800 chr3B 88.142 565 50 9 2065 2623 145368419 145367866 0.000000e+00 656
12 TraesCS3D01G135800 chr3B 85.888 411 42 10 1572 1973 145369690 145369287 1.160000e-114 424
13 TraesCS3D01G135800 chr3B 82.609 230 23 13 2749 2967 145367660 145367437 1.650000e-43 187
14 TraesCS3D01G135800 chr7D 84.158 1010 99 29 603 1570 554241279 554240289 0.000000e+00 922
15 TraesCS3D01G135800 chr7D 84.962 133 14 4 84 213 554279432 554279303 2.820000e-26 130
16 TraesCS3D01G135800 chr7B 85.934 782 83 18 812 1570 600702926 600703703 0.000000e+00 809


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G135800 chr3D 94716012 94719494 3482 False 6433.000000 6433 100.0000 1 3483 1 chr3D.!!$F1 3482
1 TraesCS3D01G135800 chr3D 600259070 600260916 1846 False 553.500000 761 82.1315 37 1578 2 chr3D.!!$F3 1541
2 TraesCS3D01G135800 chr3D 94760788 94761750 962 True 531.500000 617 86.9645 1572 2623 2 chr3D.!!$R1 1051
3 TraesCS3D01G135800 chr3A 549267118 549268899 1781 True 679.666667 985 86.8150 1572 3478 3 chr3A.!!$R1 1906
4 TraesCS3D01G135800 chr3B 807381812 807382820 1008 False 773.000000 773 81.4380 596 1569 1 chr3B.!!$F1 973
5 TraesCS3D01G135800 chr3B 145364510 145369690 5180 True 556.000000 957 86.2870 1572 3478 4 chr3B.!!$R1 1906
6 TraesCS3D01G135800 chr7D 554240289 554241279 990 True 922.000000 922 84.1580 603 1570 1 chr7D.!!$R1 967
7 TraesCS3D01G135800 chr7B 600702926 600703703 777 False 809.000000 809 85.9340 812 1570 1 chr7B.!!$F1 758

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
779 1098 0.038067 TCATGTGCTGTTGCCATTGC 60.038 50.0 0.00 0.0 38.71 3.56 F
1660 2054 0.035056 AGATTGTTGCCGGGGAGAAG 60.035 55.0 2.18 0.0 0.00 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1901 2309 0.331616 GCCAAGTCCAGTATTGGGGT 59.668 55.0 4.18 0.00 45.08 4.95 R
3379 7241 0.313987 GGTGCCAAGTGTACAAAGGC 59.686 55.0 21.36 21.36 45.41 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.763319 CGTCGTCGTGTTCATCCC 58.237 61.111 0.00 0.00 0.00 3.85
21 22 1.804326 CGTCGTCGTGTTCATCCCC 60.804 63.158 0.00 0.00 0.00 4.81
22 23 1.804326 GTCGTCGTGTTCATCCCCG 60.804 63.158 0.00 0.00 0.00 5.73
23 24 2.508439 CGTCGTGTTCATCCCCGG 60.508 66.667 0.00 0.00 0.00 5.73
24 25 2.125269 GTCGTGTTCATCCCCGGG 60.125 66.667 15.80 15.80 0.00 5.73
25 26 3.395702 TCGTGTTCATCCCCGGGG 61.396 66.667 35.80 35.80 0.00 5.73
35 36 2.925078 TCCCCGGGGATTAAGTCAG 58.075 57.895 39.67 9.16 39.76 3.51
38 39 1.200519 CCCGGGGATTAAGTCAGACA 58.799 55.000 14.71 0.00 0.00 3.41
41 42 2.236395 CCGGGGATTAAGTCAGACAAGT 59.764 50.000 2.66 0.00 0.00 3.16
44 45 5.050490 CGGGGATTAAGTCAGACAAGTATG 58.950 45.833 2.66 0.00 0.00 2.39
74 75 2.429478 CATGTGACATGTCAAGCTGGA 58.571 47.619 29.42 10.18 41.85 3.86
75 76 2.636647 TGTGACATGTCAAGCTGGAA 57.363 45.000 29.42 1.84 41.85 3.53
78 79 3.076621 GTGACATGTCAAGCTGGAATCA 58.923 45.455 29.42 0.42 41.85 2.57
79 80 3.693085 GTGACATGTCAAGCTGGAATCAT 59.307 43.478 29.42 0.00 41.85 2.45
82 83 5.761726 TGACATGTCAAGCTGGAATCATATC 59.238 40.000 26.02 0.00 36.53 1.63
87 88 8.957466 CATGTCAAGCTGGAATCATATCATAAT 58.043 33.333 0.00 0.00 0.00 1.28
107 108 9.823647 TCATAATAAAAGAGAAGACCTGATGAC 57.176 33.333 0.00 0.00 0.00 3.06
110 111 8.729805 AATAAAAGAGAAGACCTGATGACATC 57.270 34.615 8.59 8.59 0.00 3.06
114 115 4.402155 AGAGAAGACCTGATGACATCTCAC 59.598 45.833 16.25 3.73 35.45 3.51
125 126 0.247736 ACATCTCACCGAGGACTTGC 59.752 55.000 0.00 0.00 0.00 4.01
162 163 9.589111 CTAGTCTTCAAGGTCCTTCTAATTTAC 57.411 37.037 0.00 0.00 0.00 2.01
182 183 9.801873 AATTTACTGCAAACGAATTATTAGCAT 57.198 25.926 0.00 0.00 0.00 3.79
183 184 8.835467 TTTACTGCAAACGAATTATTAGCATC 57.165 30.769 0.00 0.00 0.00 3.91
184 185 6.683974 ACTGCAAACGAATTATTAGCATCT 57.316 33.333 0.00 0.00 0.00 2.90
185 186 7.088589 ACTGCAAACGAATTATTAGCATCTT 57.911 32.000 0.00 0.00 0.00 2.40
186 187 6.968904 ACTGCAAACGAATTATTAGCATCTTG 59.031 34.615 0.00 0.00 0.00 3.02
187 188 7.082700 TGCAAACGAATTATTAGCATCTTGA 57.917 32.000 0.00 0.00 0.00 3.02
206 207 5.244626 TCTTGATGATGCGATCTGATCCTTA 59.755 40.000 11.84 0.00 0.00 2.69
207 208 4.814147 TGATGATGCGATCTGATCCTTAC 58.186 43.478 11.84 3.07 0.00 2.34
208 209 4.281688 TGATGATGCGATCTGATCCTTACA 59.718 41.667 11.84 8.04 0.00 2.41
209 210 4.879197 TGATGCGATCTGATCCTTACAT 57.121 40.909 11.84 10.08 0.00 2.29
210 211 4.563061 TGATGCGATCTGATCCTTACATG 58.437 43.478 11.84 0.00 0.00 3.21
211 212 4.039609 TGATGCGATCTGATCCTTACATGT 59.960 41.667 11.84 2.69 0.00 3.21
212 213 3.721035 TGCGATCTGATCCTTACATGTG 58.279 45.455 9.11 0.00 0.00 3.21
214 215 3.986572 GCGATCTGATCCTTACATGTGAG 59.013 47.826 9.11 9.94 0.00 3.51
215 216 4.554292 CGATCTGATCCTTACATGTGAGG 58.446 47.826 26.79 26.79 37.67 3.86
217 218 4.743057 TCTGATCCTTACATGTGAGGTG 57.257 45.455 29.90 19.86 37.58 4.00
218 219 3.452264 TCTGATCCTTACATGTGAGGTGG 59.548 47.826 29.90 19.51 37.58 4.61
222 223 2.301870 TCCTTACATGTGAGGTGGTGAC 59.698 50.000 29.90 0.00 37.58 3.67
223 224 2.615493 CCTTACATGTGAGGTGGTGACC 60.615 54.545 24.95 0.00 43.52 4.02
238 239 4.753107 GTGGTGACCGAGATAAACTTTTCA 59.247 41.667 0.00 0.00 0.00 2.69
253 254 2.697431 TTTCAGTAACATGTTGCGCC 57.303 45.000 21.42 6.34 0.00 6.53
262 263 3.969250 ATGTTGCGCCCCACCGTAG 62.969 63.158 4.18 0.00 0.00 3.51
283 284 7.254795 CCGTAGCTGGTAAAATAATTTGGAGAG 60.255 40.741 0.00 0.00 0.00 3.20
284 285 7.280205 CGTAGCTGGTAAAATAATTTGGAGAGT 59.720 37.037 0.00 0.00 0.00 3.24
294 298 2.084610 TTTGGAGAGTGTCATGAGCG 57.915 50.000 0.00 0.00 0.00 5.03
295 299 0.247460 TTGGAGAGTGTCATGAGCGG 59.753 55.000 0.00 0.00 0.00 5.52
308 312 4.450419 GTCATGAGCGGAAAGGAATGATAG 59.550 45.833 0.00 0.00 0.00 2.08
315 319 4.555511 GCGGAAAGGAATGATAGTGCAATC 60.556 45.833 0.00 0.00 0.00 2.67
347 351 4.201676 CGATCGTCGGTGAATTTGATCAAA 60.202 41.667 22.52 22.52 36.00 2.69
382 394 7.027161 GGCACACATAAATACGAAACTGAAAT 58.973 34.615 0.00 0.00 0.00 2.17
427 439 2.035442 GGCTTGCGAAGACTCACCC 61.035 63.158 0.00 0.00 32.23 4.61
429 441 2.357034 TTGCGAAGACTCACCCGC 60.357 61.111 0.00 0.00 46.82 6.13
430 442 2.771763 CTTGCGAAGACTCACCCGCT 62.772 60.000 0.00 0.00 46.77 5.52
431 443 2.507324 GCGAAGACTCACCCGCTC 60.507 66.667 0.00 0.00 43.75 5.03
432 444 2.962569 CGAAGACTCACCCGCTCA 59.037 61.111 0.00 0.00 0.00 4.26
434 446 1.079750 GAAGACTCACCCGCTCACC 60.080 63.158 0.00 0.00 0.00 4.02
435 447 2.820767 GAAGACTCACCCGCTCACCG 62.821 65.000 0.00 0.00 0.00 4.94
444 456 2.415010 CGCTCACCGGAGATCCTG 59.585 66.667 9.46 0.00 44.26 3.86
445 457 2.418910 CGCTCACCGGAGATCCTGT 61.419 63.158 9.46 0.00 44.26 4.00
446 458 1.142748 GCTCACCGGAGATCCTGTG 59.857 63.158 9.46 15.14 44.26 3.66
447 459 1.819229 CTCACCGGAGATCCTGTGG 59.181 63.158 19.44 9.48 44.26 4.17
448 460 1.680522 CTCACCGGAGATCCTGTGGG 61.681 65.000 19.44 14.50 44.26 4.61
449 461 3.083997 ACCGGAGATCCTGTGGGC 61.084 66.667 9.46 0.00 32.00 5.36
462 486 0.535335 TGTGGGCGACTTATCTCACC 59.465 55.000 0.31 0.00 0.00 4.02
463 487 0.535335 GTGGGCGACTTATCTCACCA 59.465 55.000 0.00 0.00 0.00 4.17
467 491 0.824759 GCGACTTATCTCACCACCCT 59.175 55.000 0.00 0.00 0.00 4.34
469 493 2.429610 GCGACTTATCTCACCACCCTAA 59.570 50.000 0.00 0.00 0.00 2.69
494 518 5.024785 AGGAATAATCGTCTCTGTTTCCC 57.975 43.478 0.00 0.00 33.26 3.97
496 520 5.189934 AGGAATAATCGTCTCTGTTTCCCTT 59.810 40.000 0.00 0.00 33.26 3.95
499 523 0.685097 TCGTCTCTGTTTCCCTTGGG 59.315 55.000 0.00 0.00 0.00 4.12
501 525 0.955919 GTCTCTGTTTCCCTTGGGCG 60.956 60.000 0.00 0.00 0.00 6.13
504 528 1.971695 CTGTTTCCCTTGGGCGTCC 60.972 63.158 0.00 0.00 0.00 4.79
515 539 2.811317 GGCGTCCTGCTCAACTCG 60.811 66.667 0.00 0.00 45.43 4.18
518 542 1.446792 CGTCCTGCTCAACTCGCAT 60.447 57.895 0.00 0.00 36.70 4.73
530 554 3.840831 CTCGCATGGAGTTCAGGAA 57.159 52.632 0.00 0.00 38.02 3.36
531 555 2.322355 CTCGCATGGAGTTCAGGAAT 57.678 50.000 0.00 0.00 38.02 3.01
532 556 1.938577 CTCGCATGGAGTTCAGGAATG 59.061 52.381 0.00 0.00 38.02 2.67
533 557 1.554617 TCGCATGGAGTTCAGGAATGA 59.445 47.619 0.00 0.00 0.00 2.57
534 558 2.027285 TCGCATGGAGTTCAGGAATGAA 60.027 45.455 0.00 0.00 0.00 2.57
535 559 2.353889 CGCATGGAGTTCAGGAATGAAG 59.646 50.000 0.00 0.00 0.00 3.02
536 560 2.686915 GCATGGAGTTCAGGAATGAAGG 59.313 50.000 0.00 0.00 0.00 3.46
537 561 3.285484 CATGGAGTTCAGGAATGAAGGG 58.715 50.000 0.00 0.00 0.00 3.95
538 562 1.004745 TGGAGTTCAGGAATGAAGGGC 59.995 52.381 0.00 0.00 0.00 5.19
539 563 1.683319 GGAGTTCAGGAATGAAGGGCC 60.683 57.143 0.00 0.00 0.00 5.80
540 564 1.004745 GAGTTCAGGAATGAAGGGCCA 59.995 52.381 6.18 0.00 0.00 5.36
541 565 1.005215 AGTTCAGGAATGAAGGGCCAG 59.995 52.381 6.18 0.00 0.00 4.85
542 566 0.332632 TTCAGGAATGAAGGGCCAGG 59.667 55.000 6.18 0.00 0.00 4.45
543 567 1.076485 CAGGAATGAAGGGCCAGGG 60.076 63.158 6.18 0.00 0.00 4.45
544 568 2.280079 GGAATGAAGGGCCAGGGG 59.720 66.667 6.18 0.00 0.00 4.79
545 569 2.280079 GAATGAAGGGCCAGGGGG 59.720 66.667 6.18 0.00 37.18 5.40
546 570 2.537959 AATGAAGGGCCAGGGGGT 60.538 61.111 6.18 0.00 36.17 4.95
547 571 1.230482 AATGAAGGGCCAGGGGGTA 60.230 57.895 6.18 0.00 36.17 3.69
548 572 1.289244 AATGAAGGGCCAGGGGGTAG 61.289 60.000 6.18 0.00 36.17 3.18
549 573 3.810188 GAAGGGCCAGGGGGTAGC 61.810 72.222 6.18 0.00 36.17 3.58
556 580 2.364579 CAGGGGGTAGCCGTGGTA 60.365 66.667 4.56 0.00 0.00 3.25
557 581 2.364710 AGGGGGTAGCCGTGGTAC 60.365 66.667 4.56 5.11 36.00 3.34
558 582 2.684655 GGGGGTAGCCGTGGTACA 60.685 66.667 4.56 0.00 38.14 2.90
559 583 2.068213 GGGGGTAGCCGTGGTACAT 61.068 63.158 4.56 0.00 44.52 2.29
560 584 1.444672 GGGGTAGCCGTGGTACATC 59.555 63.158 4.56 6.50 44.52 3.06
561 585 1.444672 GGGTAGCCGTGGTACATCC 59.555 63.158 12.96 4.91 44.52 3.51
562 586 1.332144 GGGTAGCCGTGGTACATCCA 61.332 60.000 12.96 0.00 44.52 3.41
571 595 1.656587 TGGTACATCCAGAAGGTGCT 58.343 50.000 0.00 0.00 41.93 4.40
572 596 2.827755 TGGTACATCCAGAAGGTGCTA 58.172 47.619 0.00 0.00 41.93 3.49
573 597 3.178046 TGGTACATCCAGAAGGTGCTAA 58.822 45.455 0.00 0.00 41.93 3.09
574 598 3.585289 TGGTACATCCAGAAGGTGCTAAA 59.415 43.478 0.00 0.00 41.93 1.85
575 599 3.939592 GGTACATCCAGAAGGTGCTAAAC 59.060 47.826 0.00 0.00 35.89 2.01
576 600 5.161776 GGTACATCCAGAAGGTGCTAAACC 61.162 50.000 0.00 0.00 42.01 3.27
577 601 7.551656 GGTACATCCAGAAGGTGCTAAACCA 62.552 48.000 0.00 0.00 43.22 3.67
578 602 8.927997 GGTACATCCAGAAGGTGCTAAACCAA 62.928 46.154 0.00 0.00 43.22 3.67
598 622 9.816787 AAACCAAAGATAACCTTAATAAGACCA 57.183 29.630 0.83 0.00 34.00 4.02
599 623 9.990868 AACCAAAGATAACCTTAATAAGACCAT 57.009 29.630 0.83 0.00 34.00 3.55
600 624 9.990868 ACCAAAGATAACCTTAATAAGACCATT 57.009 29.630 0.83 0.00 34.00 3.16
622 903 2.089980 GTCCTCAGTAAGGCGTAGACA 58.910 52.381 0.00 0.00 45.78 3.41
642 923 7.972832 AGACATGACGGTGAATACTTTTAAA 57.027 32.000 0.00 0.00 0.00 1.52
647 928 9.840427 CATGACGGTGAATACTTTTAAAAGAAT 57.160 29.630 29.97 16.80 39.31 2.40
649 930 9.058174 TGACGGTGAATACTTTTAAAAGAATCA 57.942 29.630 29.97 24.41 39.31 2.57
739 1051 5.297776 GTGCTCTTTGGCATGATGTATTAGT 59.702 40.000 0.00 0.00 44.34 2.24
774 1093 1.089920 CCTACTCATGTGCTGTTGCC 58.910 55.000 0.00 0.00 38.71 4.52
775 1094 1.611410 CCTACTCATGTGCTGTTGCCA 60.611 52.381 0.00 0.00 38.71 4.92
776 1095 2.362736 CTACTCATGTGCTGTTGCCAT 58.637 47.619 0.00 0.00 38.71 4.40
777 1096 1.624336 ACTCATGTGCTGTTGCCATT 58.376 45.000 0.00 0.00 38.71 3.16
778 1097 1.271379 ACTCATGTGCTGTTGCCATTG 59.729 47.619 0.00 0.00 38.71 2.82
779 1098 0.038067 TCATGTGCTGTTGCCATTGC 60.038 50.000 0.00 0.00 38.71 3.56
780 1099 1.017177 CATGTGCTGTTGCCATTGCC 61.017 55.000 0.00 0.00 38.71 4.52
786 1105 0.099968 CTGTTGCCATTGCCGATCTG 59.900 55.000 0.00 0.00 36.33 2.90
791 1110 1.221414 GCCATTGCCGATCTGTAGAC 58.779 55.000 0.00 0.00 0.00 2.59
794 1113 2.477825 CATTGCCGATCTGTAGACCAG 58.522 52.381 0.00 0.00 42.97 4.00
802 1121 4.580995 CCGATCTGTAGACCAGTATGAAGT 59.419 45.833 0.00 0.00 42.19 3.01
803 1122 5.278071 CCGATCTGTAGACCAGTATGAAGTC 60.278 48.000 0.00 0.00 42.19 3.01
808 1127 6.892456 TCTGTAGACCAGTATGAAGTCAGAAT 59.108 38.462 0.00 0.00 42.19 2.40
809 1128 7.067615 TCTGTAGACCAGTATGAAGTCAGAATC 59.932 40.741 0.00 0.00 42.19 2.52
810 1129 6.663523 TGTAGACCAGTATGAAGTCAGAATCA 59.336 38.462 0.00 0.00 39.69 2.57
876 1197 4.019174 CCAATCAACAAGCTGGGACTAAT 58.981 43.478 0.00 0.00 0.00 1.73
889 1212 5.623824 GCTGGGACTAATCGTAAAGACTTGA 60.624 44.000 0.00 0.00 0.00 3.02
890 1213 6.349243 TGGGACTAATCGTAAAGACTTGAA 57.651 37.500 0.00 0.00 0.00 2.69
891 1214 6.395629 TGGGACTAATCGTAAAGACTTGAAG 58.604 40.000 0.00 0.00 0.00 3.02
892 1215 5.291371 GGGACTAATCGTAAAGACTTGAAGC 59.709 44.000 0.00 0.00 0.00 3.86
894 1217 6.367969 GGACTAATCGTAAAGACTTGAAGCAA 59.632 38.462 0.00 0.00 0.00 3.91
895 1218 7.352719 ACTAATCGTAAAGACTTGAAGCAAG 57.647 36.000 5.67 5.67 45.85 4.01
897 1220 5.847670 ATCGTAAAGACTTGAAGCAAGAC 57.152 39.130 13.56 7.71 43.42 3.01
902 1225 3.567478 AGACTTGAAGCAAGACTTGGT 57.433 42.857 14.07 14.07 41.85 3.67
913 1242 3.557264 GCAAGACTTGGTACTTGGTAGCT 60.557 47.826 16.80 0.00 42.26 3.32
939 1282 7.676683 TCTATGGATGCTATAAATACCCCTC 57.323 40.000 0.00 0.00 0.00 4.30
940 1283 4.819105 TGGATGCTATAAATACCCCTCG 57.181 45.455 0.00 0.00 0.00 4.63
942 1285 3.532542 GATGCTATAAATACCCCTCGCC 58.467 50.000 0.00 0.00 0.00 5.54
943 1286 2.331166 TGCTATAAATACCCCTCGCCA 58.669 47.619 0.00 0.00 0.00 5.69
944 1287 2.706723 TGCTATAAATACCCCTCGCCAA 59.293 45.455 0.00 0.00 0.00 4.52
945 1288 3.136809 TGCTATAAATACCCCTCGCCAAA 59.863 43.478 0.00 0.00 0.00 3.28
946 1289 4.202524 TGCTATAAATACCCCTCGCCAAAT 60.203 41.667 0.00 0.00 0.00 2.32
949 1292 2.818751 AATACCCCTCGCCAAATCAA 57.181 45.000 0.00 0.00 0.00 2.57
969 1312 4.630940 TCAAACAAGGCAAAAGAAAAGCTG 59.369 37.500 0.00 0.00 0.00 4.24
971 1314 3.785486 ACAAGGCAAAAGAAAAGCTGTC 58.215 40.909 0.00 0.00 0.00 3.51
973 1316 2.670939 AGGCAAAAGAAAAGCTGTCCT 58.329 42.857 0.00 0.00 0.00 3.85
977 1320 3.567585 GCAAAAGAAAAGCTGTCCTCTCT 59.432 43.478 0.00 0.00 0.00 3.10
978 1321 4.320129 GCAAAAGAAAAGCTGTCCTCTCTC 60.320 45.833 0.00 0.00 0.00 3.20
979 1322 4.696479 AAAGAAAAGCTGTCCTCTCTCA 57.304 40.909 0.00 0.00 0.00 3.27
980 1323 3.676291 AGAAAAGCTGTCCTCTCTCAC 57.324 47.619 0.00 0.00 0.00 3.51
981 1324 2.301583 AGAAAAGCTGTCCTCTCTCACC 59.698 50.000 0.00 0.00 0.00 4.02
982 1325 0.980423 AAAGCTGTCCTCTCTCACCC 59.020 55.000 0.00 0.00 0.00 4.61
983 1326 0.907230 AAGCTGTCCTCTCTCACCCC 60.907 60.000 0.00 0.00 0.00 4.95
984 1327 2.363172 GCTGTCCTCTCTCACCCCC 61.363 68.421 0.00 0.00 0.00 5.40
1049 1419 0.872388 GGCGTACTGGTGGAAAACAG 59.128 55.000 0.00 0.00 40.48 3.16
1079 1449 3.900941 ACTTCCAAAGCTTGTATTTGCG 58.099 40.909 0.00 0.00 36.52 4.85
1194 1564 2.132303 TATATGATGGTGTGGCCCCT 57.868 50.000 0.00 0.00 36.04 4.79
1196 1566 1.644437 TATGATGGTGTGGCCCCTGG 61.644 60.000 0.00 0.00 36.04 4.45
1244 1620 0.949397 ATGCGTATGAATGCTGCTGG 59.051 50.000 0.00 0.00 38.53 4.85
1327 1703 6.370442 GTCCTGTAATGTGCTAACATGTTACA 59.630 38.462 14.35 13.91 46.58 2.41
1328 1704 7.065803 GTCCTGTAATGTGCTAACATGTTACAT 59.934 37.037 14.35 15.49 46.58 2.29
1359 1739 4.156556 GCATCACATTGTCTTGGTACATGT 59.843 41.667 2.69 2.69 39.30 3.21
1404 1786 2.151202 GTTCAAAGGATCCACGCTTGA 58.849 47.619 15.82 13.52 0.00 3.02
1426 1808 4.040755 AGGTAATGGGAGCAACTACTGAT 58.959 43.478 0.00 0.00 0.00 2.90
1435 1817 3.679389 AGCAACTACTGATGAACAAGGG 58.321 45.455 0.00 0.00 0.00 3.95
1469 1851 0.692756 TGGTGGGACTGGTGACTTCA 60.693 55.000 0.00 0.00 0.00 3.02
1570 1964 1.376424 CTGCCGCATGAAGGTGAGT 60.376 57.895 0.00 0.00 0.00 3.41
1621 2015 4.020617 CAGTCCAAGAGGGCGCCA 62.021 66.667 30.85 1.46 46.92 5.69
1645 2039 1.210478 CCTCACATGTTCCGGGAGATT 59.790 52.381 10.81 0.00 0.00 2.40
1648 2042 2.039746 TCACATGTTCCGGGAGATTGTT 59.960 45.455 0.00 0.00 0.00 2.83
1660 2054 0.035056 AGATTGTTGCCGGGGAGAAG 60.035 55.000 2.18 0.00 0.00 2.85
1664 2058 2.528127 TTGCCGGGGAGAAGGTCA 60.528 61.111 2.18 0.00 0.00 4.02
1675 2069 2.237392 GGAGAAGGTCACCAATGTAGCT 59.763 50.000 0.00 0.00 0.00 3.32
1678 2072 0.692476 AGGTCACCAATGTAGCTGCA 59.308 50.000 7.05 7.05 0.00 4.41
1693 2087 1.612726 GCTGCACTGGAAGATCAGGTT 60.613 52.381 0.00 0.00 38.98 3.50
1712 2106 1.651737 TTCCACCGGGATCTTCTTGA 58.348 50.000 6.32 0.00 44.48 3.02
1714 2108 0.905357 CCACCGGGATCTTCTTGACT 59.095 55.000 6.32 0.00 35.59 3.41
1729 2123 4.349365 TCTTGACTGGGAAAACAAAGGTT 58.651 39.130 0.00 0.00 39.43 3.50
1738 2132 7.616542 ACTGGGAAAACAAAGGTTTACTTCTTA 59.383 33.333 0.00 0.00 46.20 2.10
1747 2141 9.349713 ACAAAGGTTTACTTCTTATGAACATGA 57.650 29.630 0.00 0.00 38.85 3.07
1751 2145 7.942341 AGGTTTACTTCTTATGAACATGAACCA 59.058 33.333 17.63 0.00 35.96 3.67
1756 2158 8.918202 ACTTCTTATGAACATGAACCAAACTA 57.082 30.769 0.00 0.00 0.00 2.24
1807 2215 5.473039 ACATGGCTTATGCTTCAAACTTTC 58.527 37.500 0.00 0.00 40.59 2.62
1844 2252 0.415429 ACTGGGTGGATGAGAGGACT 59.585 55.000 0.00 0.00 0.00 3.85
1905 2313 0.955919 CACTTGGAGCGAAGAACCCC 60.956 60.000 0.00 0.00 0.00 4.95
1922 2330 1.272425 CCCCAATACTGGACTTGGCAA 60.272 52.381 0.00 0.00 46.92 4.52
1994 3323 9.883142 TGTATACATTATCACAGTTGTTCATGA 57.117 29.630 0.08 0.00 0.00 3.07
1998 3327 8.339344 ACATTATCACAGTTGTTCATGAATCA 57.661 30.769 12.12 8.83 0.00 2.57
1999 3328 8.963725 ACATTATCACAGTTGTTCATGAATCAT 58.036 29.630 12.12 0.00 0.00 2.45
2004 3333 8.164058 TCACAGTTGTTCATGAATCATAAACA 57.836 30.769 12.12 7.81 31.03 2.83
2005 3334 8.795513 TCACAGTTGTTCATGAATCATAAACAT 58.204 29.630 12.29 0.00 32.80 2.71
2044 3373 9.013229 ACACTATCAGCTATTTTCATTTGTTCA 57.987 29.630 0.00 0.00 0.00 3.18
2047 3376 7.766219 ATCAGCTATTTTCATTTGTTCATGC 57.234 32.000 0.00 0.00 0.00 4.06
2048 3377 6.689554 TCAGCTATTTTCATTTGTTCATGCA 58.310 32.000 0.00 0.00 0.00 3.96
2049 3378 7.324935 TCAGCTATTTTCATTTGTTCATGCAT 58.675 30.769 0.00 0.00 0.00 3.96
2050 3379 7.490079 TCAGCTATTTTCATTTGTTCATGCATC 59.510 33.333 0.00 0.00 0.00 3.91
2051 3380 7.491372 CAGCTATTTTCATTTGTTCATGCATCT 59.509 33.333 0.00 0.00 0.00 2.90
2052 3381 8.038944 AGCTATTTTCATTTGTTCATGCATCTT 58.961 29.630 0.00 0.00 0.00 2.40
2053 3382 8.114290 GCTATTTTCATTTGTTCATGCATCTTG 58.886 33.333 0.00 0.00 0.00 3.02
2054 3383 5.849357 TTTCATTTGTTCATGCATCTTGC 57.151 34.783 0.00 0.00 45.29 4.01
2055 3384 3.852286 TCATTTGTTCATGCATCTTGCC 58.148 40.909 0.00 0.00 44.23 4.52
2056 3385 3.512329 TCATTTGTTCATGCATCTTGCCT 59.488 39.130 0.00 0.00 44.23 4.75
2057 3386 3.581024 TTTGTTCATGCATCTTGCCTC 57.419 42.857 0.00 0.00 44.23 4.70
2058 3387 2.203470 TGTTCATGCATCTTGCCTCA 57.797 45.000 0.00 0.00 44.23 3.86
2059 3388 2.516906 TGTTCATGCATCTTGCCTCAA 58.483 42.857 0.00 0.00 44.23 3.02
2060 3389 2.490509 TGTTCATGCATCTTGCCTCAAG 59.509 45.455 0.00 0.37 44.23 3.02
2077 3406 9.998106 TTGCCTCAAGAATTATATCTACTTACC 57.002 33.333 0.00 0.00 0.00 2.85
2093 3422 7.152645 TCTACTTACCATGTTCTGAAACTGAC 58.847 38.462 0.00 0.00 36.30 3.51
2109 3438 3.338249 ACTGACATGTTACCATCAGTGC 58.662 45.455 13.17 0.00 35.77 4.40
2110 3439 3.008375 ACTGACATGTTACCATCAGTGCT 59.992 43.478 13.17 0.00 35.77 4.40
2130 3459 0.249657 GCCGAAGCTGGAATCGAGAT 60.250 55.000 7.10 0.00 41.43 2.75
2141 3470 1.960040 AATCGAGATGGTGGCGCTGA 61.960 55.000 7.64 0.00 0.00 4.26
2156 3485 0.601311 GCTGAAGAACGTCTGCTGGT 60.601 55.000 10.83 0.00 38.89 4.00
2179 3508 0.772124 AGGTCCAAGGGAAGCTGGAA 60.772 55.000 0.00 0.00 43.32 3.53
2229 3558 4.559862 ATGAGGTTTTCTTCGAGGTGAT 57.440 40.909 0.00 0.00 0.00 3.06
2239 3568 1.095807 TCGAGGTGATGCTCGACGAT 61.096 55.000 0.00 0.00 45.50 3.73
2240 3569 0.586802 CGAGGTGATGCTCGACGATA 59.413 55.000 0.00 0.00 44.85 2.92
2380 3709 1.272480 GGGGAGGTTAAGCCACACAAT 60.272 52.381 0.00 0.00 40.61 2.71
2411 3740 2.596346 GAGAGGCAGAGATCTCCATGA 58.404 52.381 19.30 0.00 36.72 3.07
2418 3747 4.309099 GCAGAGATCTCCATGATTGAGTC 58.691 47.826 19.30 0.00 35.14 3.36
2486 3815 6.726490 AGATCATCCCAAAAGAATGAATGG 57.274 37.500 0.00 0.00 0.00 3.16
2487 3816 4.741321 TCATCCCAAAAGAATGAATGGC 57.259 40.909 0.00 0.00 0.00 4.40
2488 3817 4.355549 TCATCCCAAAAGAATGAATGGCT 58.644 39.130 0.00 0.00 0.00 4.75
2499 3828 3.665745 ATGAATGGCTTGGTTGTGTTC 57.334 42.857 0.00 0.00 0.00 3.18
2531 3860 0.746204 TCGTTGGCTGCTGTTTGTCA 60.746 50.000 0.00 0.00 0.00 3.58
2535 3864 0.740149 TGGCTGCTGTTTGTCAACTG 59.260 50.000 0.00 0.00 35.47 3.16
2539 3868 2.419057 GCTGTTTGTCAACTGCCCT 58.581 52.632 5.85 0.00 46.80 5.19
2540 3869 1.604604 GCTGTTTGTCAACTGCCCTA 58.395 50.000 5.85 0.00 46.80 3.53
2541 3870 1.537202 GCTGTTTGTCAACTGCCCTAG 59.463 52.381 5.85 0.00 46.80 3.02
2542 3871 1.537202 CTGTTTGTCAACTGCCCTAGC 59.463 52.381 0.00 0.00 40.48 3.42
2543 3872 0.881796 GTTTGTCAACTGCCCTAGCC 59.118 55.000 0.00 0.00 38.69 3.93
2544 3873 0.251165 TTTGTCAACTGCCCTAGCCC 60.251 55.000 0.00 0.00 38.69 5.19
2545 3874 2.137177 TTGTCAACTGCCCTAGCCCC 62.137 60.000 0.00 0.00 38.69 5.80
2546 3875 3.015145 TCAACTGCCCTAGCCCCC 61.015 66.667 0.00 0.00 38.69 5.40
2584 3913 9.767228 TTTGATGCATGGGAATAATATTTTCAG 57.233 29.630 2.46 0.00 0.00 3.02
2587 3916 7.894753 TGCATGGGAATAATATTTTCAGTGA 57.105 32.000 0.00 0.00 0.00 3.41
2624 3953 9.350357 CAAGAGTTCTGAATGAATTTTATGTGG 57.650 33.333 0.00 0.00 36.99 4.17
2626 3955 8.734386 AGAGTTCTGAATGAATTTTATGTGGTC 58.266 33.333 0.00 0.00 36.99 4.02
2628 3957 9.028284 AGTTCTGAATGAATTTTATGTGGTCAT 57.972 29.630 0.00 0.00 36.99 3.06
2629 3958 9.643693 GTTCTGAATGAATTTTATGTGGTCATT 57.356 29.630 0.00 0.00 40.65 2.57
2681 4010 8.902540 TTCAAGAAGTTGCACTAGAAAGAATA 57.097 30.769 0.00 0.00 33.23 1.75
2726 6558 8.827832 TGCTATAAACCTCTAAGTACTGGTTA 57.172 34.615 13.99 3.44 41.36 2.85
2774 6609 3.313526 CAGTGCTGCACTAACTTCTGTTT 59.686 43.478 32.51 5.96 43.43 2.83
2775 6610 3.947834 AGTGCTGCACTAACTTCTGTTTT 59.052 39.130 32.18 4.99 43.46 2.43
2776 6611 4.399303 AGTGCTGCACTAACTTCTGTTTTT 59.601 37.500 32.18 4.53 43.46 1.94
2814 6649 8.879427 ATACCAAGCTTACCAAAAATTACTCT 57.121 30.769 0.00 0.00 0.00 3.24
2815 6650 7.597288 ACCAAGCTTACCAAAAATTACTCTT 57.403 32.000 0.00 0.00 0.00 2.85
2818 6653 9.406828 CCAAGCTTACCAAAAATTACTCTTAAC 57.593 33.333 0.00 0.00 0.00 2.01
2901 6737 2.029290 ACCACTCAGCTAGGTTAACACG 60.029 50.000 8.10 0.00 29.58 4.49
2916 6752 6.484308 AGGTTAACACGTTACAAGCTTAACAT 59.516 34.615 8.10 0.00 32.32 2.71
2920 6756 6.126568 ACACGTTACAAGCTTAACATGTTT 57.873 33.333 17.78 0.00 35.41 2.83
2921 6757 7.249186 ACACGTTACAAGCTTAACATGTTTA 57.751 32.000 17.78 6.77 35.41 2.01
2922 6758 7.127686 ACACGTTACAAGCTTAACATGTTTAC 58.872 34.615 17.78 6.73 35.41 2.01
2926 6762 8.227791 CGTTACAAGCTTAACATGTTTACTGAT 58.772 33.333 17.78 6.56 32.32 2.90
2927 6763 9.893305 GTTACAAGCTTAACATGTTTACTGATT 57.107 29.630 17.78 6.91 32.95 2.57
2946 6799 3.421919 TTGGATCATGTCAGCAACAGA 57.578 42.857 0.00 0.00 42.37 3.41
2970 6825 5.013599 AGTCAAGGAGAATTCAAGCCTAACT 59.986 40.000 8.44 13.63 0.00 2.24
2983 6845 4.479786 AGCCTAACTTGATCAAGGAGTC 57.520 45.455 33.11 21.54 42.53 3.36
2985 6847 3.368531 GCCTAACTTGATCAAGGAGTCGT 60.369 47.826 33.11 14.03 42.53 4.34
2999 6861 7.211573 TCAAGGAGTCGTTTAACAGATAACAA 58.788 34.615 0.00 0.00 0.00 2.83
3002 6864 7.383687 AGGAGTCGTTTAACAGATAACAATGA 58.616 34.615 0.00 0.00 0.00 2.57
3055 6917 8.638685 AGCAAGTATGATTCAAATTACATTGC 57.361 30.769 15.79 15.79 0.00 3.56
3056 6918 7.707893 AGCAAGTATGATTCAAATTACATTGCC 59.292 33.333 17.69 9.16 29.75 4.52
3060 6922 5.083533 TGATTCAAATTACATTGCCACCC 57.916 39.130 0.00 0.00 0.00 4.61
3075 6937 1.272092 CCACCCCAGAGCTCATGAAAA 60.272 52.381 17.77 0.00 0.00 2.29
3076 6938 1.815003 CACCCCAGAGCTCATGAAAAC 59.185 52.381 17.77 0.00 0.00 2.43
3077 6939 1.425066 ACCCCAGAGCTCATGAAAACA 59.575 47.619 17.77 0.00 0.00 2.83
3078 6940 2.158475 ACCCCAGAGCTCATGAAAACAA 60.158 45.455 17.77 0.00 0.00 2.83
3102 6964 5.453567 AAACAAAGCTCTAATTGTCCCAC 57.546 39.130 2.11 0.00 38.75 4.61
3135 6997 3.609853 TCTGTTCCCATTTCTCAATCGG 58.390 45.455 0.00 0.00 0.00 4.18
3136 6998 2.091541 TGTTCCCATTTCTCAATCGGC 58.908 47.619 0.00 0.00 0.00 5.54
3152 7014 2.358957 TCGGCATCAAATGAACAGAGG 58.641 47.619 0.00 0.00 0.00 3.69
3173 7035 6.150809 AGAGGAAATCTGCTCAACTGAAAATC 59.849 38.462 0.00 0.00 42.28 2.17
3177 7039 4.090761 TCTGCTCAACTGAAAATCTGGT 57.909 40.909 0.00 0.00 0.00 4.00
3179 7041 5.240891 TCTGCTCAACTGAAAATCTGGTAG 58.759 41.667 0.00 0.00 0.00 3.18
3183 7045 2.403252 ACTGAAAATCTGGTAGCCGG 57.597 50.000 0.00 0.00 0.00 6.13
3256 7118 5.472137 TGGAAGGAAATTCTAAAACGACTGG 59.528 40.000 0.00 0.00 38.07 4.00
3379 7241 1.194547 CGGATTGTCACCAACGTCAAG 59.805 52.381 0.00 0.00 32.26 3.02
3420 7282 4.009675 CAACCAGCAACCTAAGCAAGATA 58.990 43.478 0.00 0.00 0.00 1.98
3434 7296 5.683876 AGCAAGATACACACCATTAGAGT 57.316 39.130 0.00 0.00 0.00 3.24
3435 7297 6.054860 AGCAAGATACACACCATTAGAGTT 57.945 37.500 0.00 0.00 0.00 3.01
3438 7300 6.371548 GCAAGATACACACCATTAGAGTTTGA 59.628 38.462 0.00 0.00 0.00 2.69
3447 7309 7.228108 CACACCATTAGAGTTTGATGAGCATAT 59.772 37.037 0.00 0.00 0.00 1.78
3458 7320 9.123902 AGTTTGATGAGCATATATGTAGCAAAA 57.876 29.630 20.79 11.52 31.35 2.44
3478 7341 7.041167 AGCAAAATGAAAAGGGAATAAAACTGC 60.041 33.333 0.00 0.00 0.00 4.40
3479 7342 7.584108 CAAAATGAAAAGGGAATAAAACTGCC 58.416 34.615 0.00 0.00 0.00 4.85
3480 7343 6.432403 AATGAAAAGGGAATAAAACTGCCA 57.568 33.333 0.00 0.00 0.00 4.92
3481 7344 5.467035 TGAAAAGGGAATAAAACTGCCAG 57.533 39.130 0.00 0.00 0.00 4.85
3482 7345 4.898861 TGAAAAGGGAATAAAACTGCCAGT 59.101 37.500 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.804326 GGGGATGAACACGACGACG 60.804 63.158 5.58 5.58 45.75 5.12
4 5 1.804326 CGGGGATGAACACGACGAC 60.804 63.158 0.00 0.00 0.00 4.34
5 6 2.569657 CGGGGATGAACACGACGA 59.430 61.111 0.00 0.00 0.00 4.20
6 7 2.508439 CCGGGGATGAACACGACG 60.508 66.667 0.00 0.00 0.00 5.12
7 8 2.125269 CCCGGGGATGAACACGAC 60.125 66.667 14.71 0.00 0.00 4.34
8 9 3.395702 CCCCGGGGATGAACACGA 61.396 66.667 38.41 0.00 37.50 4.35
9 10 3.395702 TCCCCGGGGATGAACACG 61.396 66.667 39.67 10.02 39.76 4.49
18 19 0.468648 GTCTGACTTAATCCCCGGGG 59.531 60.000 35.80 35.80 0.00 5.73
19 20 1.200519 TGTCTGACTTAATCCCCGGG 58.799 55.000 15.80 15.80 0.00 5.73
20 21 2.236395 ACTTGTCTGACTTAATCCCCGG 59.764 50.000 9.51 0.00 0.00 5.73
21 22 3.611766 ACTTGTCTGACTTAATCCCCG 57.388 47.619 9.51 0.00 0.00 5.73
22 23 4.816925 GCATACTTGTCTGACTTAATCCCC 59.183 45.833 9.51 0.00 0.00 4.81
23 24 5.428253 TGCATACTTGTCTGACTTAATCCC 58.572 41.667 9.51 0.00 0.00 3.85
24 25 6.985188 TTGCATACTTGTCTGACTTAATCC 57.015 37.500 9.51 0.00 0.00 3.01
25 26 9.098355 TGTATTGCATACTTGTCTGACTTAATC 57.902 33.333 9.51 0.00 36.70 1.75
26 27 9.618890 ATGTATTGCATACTTGTCTGACTTAAT 57.381 29.630 9.51 1.83 35.74 1.40
27 28 8.882736 CATGTATTGCATACTTGTCTGACTTAA 58.117 33.333 9.51 0.00 36.62 1.85
28 29 8.424274 CATGTATTGCATACTTGTCTGACTTA 57.576 34.615 9.51 0.00 36.62 2.24
29 30 7.312657 CATGTATTGCATACTTGTCTGACTT 57.687 36.000 9.51 0.00 36.62 3.01
30 31 6.915544 CATGTATTGCATACTTGTCTGACT 57.084 37.500 9.51 0.00 36.62 3.41
51 52 2.163613 CAGCTTGACATGTCACATGCAT 59.836 45.455 31.42 21.01 39.66 3.96
60 61 5.687780 TGATATGATTCCAGCTTGACATGT 58.312 37.500 0.00 0.00 0.00 3.21
82 83 9.605275 TGTCATCAGGTCTTCTCTTTTATTATG 57.395 33.333 0.00 0.00 0.00 1.90
87 88 7.179160 TGAGATGTCATCAGGTCTTCTCTTTTA 59.821 37.037 15.20 0.00 35.14 1.52
103 104 2.151502 AGTCCTCGGTGAGATGTCAT 57.848 50.000 0.00 0.00 34.36 3.06
107 108 0.534412 AGCAAGTCCTCGGTGAGATG 59.466 55.000 0.00 0.00 0.00 2.90
110 111 2.969628 ATAAGCAAGTCCTCGGTGAG 57.030 50.000 0.00 0.00 0.00 3.51
114 115 8.142551 ACTAGTTATAAATAAGCAAGTCCTCGG 58.857 37.037 0.00 0.00 0.00 4.63
162 163 7.188834 TCAAGATGCTAATAATTCGTTTGCAG 58.811 34.615 14.36 5.37 39.79 4.41
181 182 4.223255 AGGATCAGATCGCATCATCAAGAT 59.777 41.667 4.23 0.00 37.48 2.40
182 183 3.577415 AGGATCAGATCGCATCATCAAGA 59.423 43.478 4.23 0.00 0.00 3.02
183 184 3.927854 AGGATCAGATCGCATCATCAAG 58.072 45.455 4.23 0.00 0.00 3.02
184 185 4.347360 AAGGATCAGATCGCATCATCAA 57.653 40.909 4.23 0.00 0.00 2.57
185 186 4.281688 TGTAAGGATCAGATCGCATCATCA 59.718 41.667 4.23 0.00 0.00 3.07
186 187 4.814147 TGTAAGGATCAGATCGCATCATC 58.186 43.478 4.23 0.00 0.00 2.92
187 188 4.879197 TGTAAGGATCAGATCGCATCAT 57.121 40.909 4.23 0.01 0.00 2.45
198 199 3.055167 CACCACCTCACATGTAAGGATCA 60.055 47.826 22.64 0.00 36.46 2.92
206 207 1.118965 TCGGTCACCACCTCACATGT 61.119 55.000 0.00 0.00 41.17 3.21
207 208 0.390340 CTCGGTCACCACCTCACATG 60.390 60.000 0.00 0.00 41.17 3.21
208 209 0.541998 TCTCGGTCACCACCTCACAT 60.542 55.000 0.00 0.00 41.17 3.21
209 210 0.541998 ATCTCGGTCACCACCTCACA 60.542 55.000 0.00 0.00 41.17 3.58
210 211 1.471119 TATCTCGGTCACCACCTCAC 58.529 55.000 0.00 0.00 41.17 3.51
211 212 2.225382 TTATCTCGGTCACCACCTCA 57.775 50.000 0.00 0.00 41.17 3.86
212 213 2.496470 AGTTTATCTCGGTCACCACCTC 59.504 50.000 0.00 0.00 41.17 3.85
214 215 3.329929 AAGTTTATCTCGGTCACCACC 57.670 47.619 0.00 0.00 39.69 4.61
215 216 4.753107 TGAAAAGTTTATCTCGGTCACCAC 59.247 41.667 0.00 0.00 0.00 4.16
217 218 4.995487 ACTGAAAAGTTTATCTCGGTCACC 59.005 41.667 0.00 0.00 0.00 4.02
218 219 7.170320 TGTTACTGAAAAGTTTATCTCGGTCAC 59.830 37.037 3.97 4.89 0.00 3.67
222 223 8.029642 ACATGTTACTGAAAAGTTTATCTCGG 57.970 34.615 0.00 0.00 0.00 4.63
223 224 9.318041 CAACATGTTACTGAAAAGTTTATCTCG 57.682 33.333 11.53 0.00 0.00 4.04
227 228 6.362283 GCGCAACATGTTACTGAAAAGTTTAT 59.638 34.615 11.53 0.00 0.00 1.40
231 232 3.550030 GGCGCAACATGTTACTGAAAAGT 60.550 43.478 11.53 0.00 0.00 2.66
232 233 2.979813 GGCGCAACATGTTACTGAAAAG 59.020 45.455 11.53 0.00 0.00 2.27
238 239 1.074072 TGGGGCGCAACATGTTACT 59.926 52.632 11.53 0.00 0.00 2.24
262 263 7.094377 TGACACTCTCCAAATTATTTTACCAGC 60.094 37.037 0.00 0.00 0.00 4.85
283 284 1.808411 TTCCTTTCCGCTCATGACAC 58.192 50.000 0.00 0.00 0.00 3.67
284 285 2.027285 TCATTCCTTTCCGCTCATGACA 60.027 45.455 0.00 0.00 0.00 3.58
294 298 5.506982 GCAGATTGCACTATCATTCCTTTCC 60.507 44.000 1.40 0.00 44.26 3.13
295 299 5.517904 GCAGATTGCACTATCATTCCTTTC 58.482 41.667 1.40 0.00 44.26 2.62
308 312 3.499737 CGTCCCCGCAGATTGCAC 61.500 66.667 1.69 0.00 45.36 4.57
315 319 4.907034 CGACGATCGTCCCCGCAG 62.907 72.222 35.48 20.42 41.76 5.18
322 326 2.256174 TCAAATTCACCGACGATCGTC 58.744 47.619 33.22 33.22 38.40 4.20
324 328 2.857748 TGATCAAATTCACCGACGATCG 59.142 45.455 14.88 14.88 40.07 3.69
326 330 4.454161 TGTTTGATCAAATTCACCGACGAT 59.546 37.500 23.05 0.00 32.36 3.73
327 331 3.810386 TGTTTGATCAAATTCACCGACGA 59.190 39.130 23.05 0.00 32.36 4.20
329 333 4.324402 GCATGTTTGATCAAATTCACCGAC 59.676 41.667 23.05 9.59 32.36 4.79
331 335 4.090354 GTGCATGTTTGATCAAATTCACCG 59.910 41.667 23.05 12.91 32.36 4.94
375 387 9.897744 CGCATAACCATGAATTATTATTTCAGT 57.102 29.630 0.00 0.00 36.60 3.41
387 399 5.124457 GCCTATCAATCGCATAACCATGAAT 59.876 40.000 0.00 0.00 33.67 2.57
389 401 4.002982 GCCTATCAATCGCATAACCATGA 58.997 43.478 0.00 0.00 33.67 3.07
395 407 2.480037 CGCAAGCCTATCAATCGCATAA 59.520 45.455 0.00 0.00 0.00 1.90
398 410 0.179086 TCGCAAGCCTATCAATCGCA 60.179 50.000 0.00 0.00 37.18 5.10
427 439 2.415010 CAGGATCTCCGGTGAGCG 59.585 66.667 14.95 0.00 42.08 5.03
432 444 3.083997 GCCCACAGGATCTCCGGT 61.084 66.667 0.00 0.00 45.28 5.28
434 446 3.147595 TCGCCCACAGGATCTCCG 61.148 66.667 0.00 0.00 42.08 4.63
435 447 1.617947 AAGTCGCCCACAGGATCTCC 61.618 60.000 0.00 0.00 33.47 3.71
436 448 1.112113 TAAGTCGCCCACAGGATCTC 58.888 55.000 0.00 0.00 33.47 2.75
437 449 1.689273 GATAAGTCGCCCACAGGATCT 59.311 52.381 0.00 0.00 33.47 2.75
439 451 1.689273 GAGATAAGTCGCCCACAGGAT 59.311 52.381 0.00 0.00 33.47 3.24
440 452 1.112113 GAGATAAGTCGCCCACAGGA 58.888 55.000 0.00 0.00 33.47 3.86
441 453 0.824109 TGAGATAAGTCGCCCACAGG 59.176 55.000 0.00 0.00 0.00 4.00
442 454 1.471676 GGTGAGATAAGTCGCCCACAG 60.472 57.143 0.00 0.00 40.71 3.66
443 455 0.535335 GGTGAGATAAGTCGCCCACA 59.465 55.000 0.00 0.00 40.71 4.17
444 456 0.535335 TGGTGAGATAAGTCGCCCAC 59.465 55.000 1.14 0.00 45.23 4.61
445 457 0.535335 GTGGTGAGATAAGTCGCCCA 59.465 55.000 1.14 0.00 45.23 5.36
446 458 0.179081 GGTGGTGAGATAAGTCGCCC 60.179 60.000 1.14 0.00 45.23 6.13
447 459 0.179081 GGGTGGTGAGATAAGTCGCC 60.179 60.000 0.00 0.00 45.91 5.54
448 460 0.824759 AGGGTGGTGAGATAAGTCGC 59.175 55.000 0.00 0.00 0.00 5.19
449 461 3.952323 TCTTAGGGTGGTGAGATAAGTCG 59.048 47.826 0.00 0.00 0.00 4.18
462 486 6.041069 AGAGACGATTATTCCTTCTTAGGGTG 59.959 42.308 0.00 0.00 42.26 4.61
463 487 6.041069 CAGAGACGATTATTCCTTCTTAGGGT 59.959 42.308 0.00 0.00 42.26 4.34
467 491 7.980099 GGAAACAGAGACGATTATTCCTTCTTA 59.020 37.037 0.00 0.00 33.68 2.10
469 493 6.342111 GGAAACAGAGACGATTATTCCTTCT 58.658 40.000 0.00 0.00 33.68 2.85
477 501 3.055385 CCCAAGGGAAACAGAGACGATTA 60.055 47.826 0.00 0.00 37.50 1.75
487 511 2.114411 GGACGCCCAAGGGAAACA 59.886 61.111 9.92 0.00 37.50 2.83
494 518 2.032528 TTGAGCAGGACGCCCAAG 59.967 61.111 0.00 0.00 44.04 3.61
496 520 3.240134 GAGTTGAGCAGGACGCCCA 62.240 63.158 0.00 0.00 44.04 5.36
499 523 3.482783 GCGAGTTGAGCAGGACGC 61.483 66.667 0.00 0.00 42.91 5.19
515 539 2.686915 CCTTCATTCCTGAACTCCATGC 59.313 50.000 0.00 0.00 36.46 4.06
518 542 1.004745 GCCCTTCATTCCTGAACTCCA 59.995 52.381 0.00 0.00 36.46 3.86
526 550 2.319762 CCCCTGGCCCTTCATTCCT 61.320 63.158 0.00 0.00 0.00 3.36
527 551 2.280079 CCCCTGGCCCTTCATTCC 59.720 66.667 0.00 0.00 0.00 3.01
528 552 1.286305 TACCCCCTGGCCCTTCATTC 61.286 60.000 0.00 0.00 33.59 2.67
529 553 1.230482 TACCCCCTGGCCCTTCATT 60.230 57.895 0.00 0.00 33.59 2.57
530 554 1.697754 CTACCCCCTGGCCCTTCAT 60.698 63.158 0.00 0.00 33.59 2.57
531 555 2.286121 CTACCCCCTGGCCCTTCA 60.286 66.667 0.00 0.00 33.59 3.02
532 556 3.810188 GCTACCCCCTGGCCCTTC 61.810 72.222 0.00 0.00 33.59 3.46
538 562 3.988050 TACCACGGCTACCCCCTGG 62.988 68.421 0.00 0.00 37.80 4.45
539 563 2.364579 TACCACGGCTACCCCCTG 60.365 66.667 0.00 0.00 0.00 4.45
540 564 2.364710 GTACCACGGCTACCCCCT 60.365 66.667 0.00 0.00 0.00 4.79
541 565 2.036428 GATGTACCACGGCTACCCCC 62.036 65.000 0.00 0.00 0.00 5.40
542 566 1.444672 GATGTACCACGGCTACCCC 59.555 63.158 0.00 0.00 0.00 4.95
543 567 1.332144 TGGATGTACCACGGCTACCC 61.332 60.000 0.00 0.00 44.64 3.69
544 568 0.104304 CTGGATGTACCACGGCTACC 59.896 60.000 0.00 0.00 44.64 3.18
545 569 1.108776 TCTGGATGTACCACGGCTAC 58.891 55.000 0.00 0.00 44.64 3.58
546 570 1.754803 CTTCTGGATGTACCACGGCTA 59.245 52.381 0.00 0.00 44.64 3.93
547 571 0.537188 CTTCTGGATGTACCACGGCT 59.463 55.000 0.00 0.00 44.64 5.52
548 572 0.462047 CCTTCTGGATGTACCACGGC 60.462 60.000 0.00 0.00 44.64 5.68
549 573 0.902531 ACCTTCTGGATGTACCACGG 59.097 55.000 0.00 0.00 44.64 4.94
550 574 2.007049 GCACCTTCTGGATGTACCACG 61.007 57.143 0.00 0.00 44.64 4.94
551 575 1.279271 AGCACCTTCTGGATGTACCAC 59.721 52.381 0.00 0.00 44.64 4.16
552 576 7.551656 GGTTTAGCACCTTCTGGATGTACCA 62.552 48.000 0.00 0.00 43.97 3.25
553 577 3.906720 TTAGCACCTTCTGGATGTACC 57.093 47.619 0.00 0.00 37.04 3.34
554 578 3.939592 GGTTTAGCACCTTCTGGATGTAC 59.060 47.826 0.00 0.00 43.29 2.90
555 579 4.216411 GGTTTAGCACCTTCTGGATGTA 57.784 45.455 0.00 0.00 43.29 2.29
556 580 3.073274 GGTTTAGCACCTTCTGGATGT 57.927 47.619 0.00 0.00 43.29 3.06
563 587 7.392393 TAAGGTTATCTTTGGTTTAGCACCTTC 59.608 37.037 3.08 0.00 40.50 3.46
564 588 7.235804 TAAGGTTATCTTTGGTTTAGCACCTT 58.764 34.615 5.19 5.19 43.13 3.50
565 589 6.786122 TAAGGTTATCTTTGGTTTAGCACCT 58.214 36.000 0.00 0.00 40.45 4.00
566 590 7.457024 TTAAGGTTATCTTTGGTTTAGCACC 57.543 36.000 0.00 0.00 40.32 5.01
572 596 9.816787 TGGTCTTATTAAGGTTATCTTTGGTTT 57.183 29.630 3.66 0.00 36.93 3.27
573 597 9.990868 ATGGTCTTATTAAGGTTATCTTTGGTT 57.009 29.630 3.66 0.00 36.93 3.67
574 598 9.990868 AATGGTCTTATTAAGGTTATCTTTGGT 57.009 29.630 3.66 0.00 36.93 3.67
579 603 9.628500 GGACAAATGGTCTTATTAAGGTTATCT 57.372 33.333 3.66 0.00 46.16 1.98
580 604 9.628500 AGGACAAATGGTCTTATTAAGGTTATC 57.372 33.333 3.66 0.00 46.16 1.75
581 605 9.628500 GAGGACAAATGGTCTTATTAAGGTTAT 57.372 33.333 3.66 0.00 46.16 1.89
582 606 8.607713 TGAGGACAAATGGTCTTATTAAGGTTA 58.392 33.333 3.66 0.00 46.16 2.85
583 607 7.466804 TGAGGACAAATGGTCTTATTAAGGTT 58.533 34.615 3.66 0.00 46.16 3.50
584 608 7.027874 TGAGGACAAATGGTCTTATTAAGGT 57.972 36.000 3.66 0.00 46.16 3.50
585 609 7.112779 ACTGAGGACAAATGGTCTTATTAAGG 58.887 38.462 3.66 0.00 46.16 2.69
586 610 9.667107 TTACTGAGGACAAATGGTCTTATTAAG 57.333 33.333 0.00 0.00 46.16 1.85
587 611 9.667107 CTTACTGAGGACAAATGGTCTTATTAA 57.333 33.333 0.00 0.00 46.16 1.40
642 923 4.880696 GCTGCTACTCCTTGAATGATTCTT 59.119 41.667 6.73 0.00 0.00 2.52
647 928 2.568956 AGTGCTGCTACTCCTTGAATGA 59.431 45.455 0.00 0.00 0.00 2.57
648 929 2.935201 GAGTGCTGCTACTCCTTGAATG 59.065 50.000 16.38 0.00 40.92 2.67
649 930 2.568956 TGAGTGCTGCTACTCCTTGAAT 59.431 45.455 21.22 0.00 45.07 2.57
692 988 3.534554 TGAGTACAGCTATTGCACATGG 58.465 45.455 1.12 0.00 42.74 3.66
695 991 3.934579 CACATGAGTACAGCTATTGCACA 59.065 43.478 0.00 0.00 42.74 4.57
739 1051 3.491342 AGTAGGCTCATGCTCGAGATAA 58.509 45.455 18.75 0.24 39.59 1.75
774 1093 2.602257 TGGTCTACAGATCGGCAATG 57.398 50.000 0.00 0.00 0.00 2.82
786 1105 7.101652 TGATTCTGACTTCATACTGGTCTAC 57.898 40.000 0.00 0.00 0.00 2.59
791 1110 5.595885 ACGATGATTCTGACTTCATACTGG 58.404 41.667 0.00 0.00 32.84 4.00
794 1113 7.706281 AATGACGATGATTCTGACTTCATAC 57.294 36.000 0.00 0.91 32.84 2.39
821 1140 9.829507 CTCCATTGACTTCTCTGTTTAGAATAT 57.170 33.333 0.00 0.00 35.04 1.28
826 1147 6.929625 TCTCTCCATTGACTTCTCTGTTTAG 58.070 40.000 0.00 0.00 0.00 1.85
827 1148 6.918067 TCTCTCCATTGACTTCTCTGTTTA 57.082 37.500 0.00 0.00 0.00 2.01
835 1156 4.679373 TGGCTATCTCTCCATTGACTTC 57.321 45.455 0.00 0.00 0.00 3.01
836 1157 5.131642 TGATTGGCTATCTCTCCATTGACTT 59.868 40.000 10.19 0.00 34.17 3.01
841 1162 5.378230 TGTTGATTGGCTATCTCTCCATT 57.622 39.130 10.19 0.00 34.17 3.16
842 1163 5.374921 CTTGTTGATTGGCTATCTCTCCAT 58.625 41.667 10.19 0.00 34.17 3.41
876 1197 4.945246 AGTCTTGCTTCAAGTCTTTACGA 58.055 39.130 6.47 0.00 41.66 3.43
889 1212 3.577805 ACCAAGTACCAAGTCTTGCTT 57.422 42.857 7.09 2.90 39.47 3.91
890 1213 3.557264 GCTACCAAGTACCAAGTCTTGCT 60.557 47.826 7.09 0.00 39.47 3.91
891 1214 2.742589 GCTACCAAGTACCAAGTCTTGC 59.257 50.000 7.09 0.00 39.47 4.01
892 1215 4.273148 AGCTACCAAGTACCAAGTCTTG 57.727 45.455 5.53 5.53 40.19 3.02
894 1217 4.593634 AGAAAGCTACCAAGTACCAAGTCT 59.406 41.667 0.00 0.00 0.00 3.24
895 1218 4.895961 AGAAAGCTACCAAGTACCAAGTC 58.104 43.478 0.00 0.00 0.00 3.01
897 1220 5.817816 CCATAGAAAGCTACCAAGTACCAAG 59.182 44.000 0.00 0.00 0.00 3.61
902 1225 5.366768 AGCATCCATAGAAAGCTACCAAGTA 59.633 40.000 0.00 0.00 36.15 2.24
913 1242 8.463055 AGGGGTATTTATAGCATCCATAGAAA 57.537 34.615 1.86 0.00 32.63 2.52
939 1282 1.863267 TTGCCTTGTTTGATTTGGCG 58.137 45.000 0.00 0.00 45.90 5.69
940 1283 3.876320 TCTTTTGCCTTGTTTGATTTGGC 59.124 39.130 0.00 0.00 43.49 4.52
942 1285 6.469915 GCTTTTCTTTTGCCTTGTTTGATTTG 59.530 34.615 0.00 0.00 0.00 2.32
943 1286 6.375174 AGCTTTTCTTTTGCCTTGTTTGATTT 59.625 30.769 0.00 0.00 0.00 2.17
944 1287 5.882000 AGCTTTTCTTTTGCCTTGTTTGATT 59.118 32.000 0.00 0.00 0.00 2.57
945 1288 5.295045 CAGCTTTTCTTTTGCCTTGTTTGAT 59.705 36.000 0.00 0.00 0.00 2.57
946 1289 4.630940 CAGCTTTTCTTTTGCCTTGTTTGA 59.369 37.500 0.00 0.00 0.00 2.69
949 1292 4.183865 GACAGCTTTTCTTTTGCCTTGTT 58.816 39.130 0.00 0.00 0.00 2.83
983 1326 3.159104 ATTGGTGGTGGTGGTGGGG 62.159 63.158 0.00 0.00 0.00 4.96
984 1327 1.907807 CATTGGTGGTGGTGGTGGG 60.908 63.158 0.00 0.00 0.00 4.61
985 1328 1.907807 CCATTGGTGGTGGTGGTGG 60.908 63.158 0.00 0.00 40.83 4.61
996 1366 3.839490 TGATCTTGAAATTGGCCATTGGT 59.161 39.130 6.09 0.00 0.00 3.67
1034 1404 1.953686 GCTTGCTGTTTTCCACCAGTA 59.046 47.619 0.00 0.00 0.00 2.74
1049 1419 1.339291 AGCTTTGGAAGTCAAGCTTGC 59.661 47.619 21.99 16.05 44.52 4.01
1050 1420 3.378339 CAAGCTTTGGAAGTCAAGCTTG 58.622 45.455 24.51 24.51 46.95 4.01
1079 1449 2.671896 ATCCCCAGAAATGATCCTGC 57.328 50.000 0.00 0.00 0.00 4.85
1194 1564 3.118454 GCGACTAGCTTTGCGCCA 61.118 61.111 4.18 0.00 43.33 5.69
1244 1620 6.639686 CACTATGATGAATAAATTGCACCAGC 59.360 38.462 0.00 0.00 42.57 4.85
1376 1758 3.947834 GTGGATCCTTTGAACCTATGTGG 59.052 47.826 14.23 0.00 42.93 4.17
1404 1786 3.450904 TCAGTAGTTGCTCCCATTACCT 58.549 45.455 0.00 0.00 0.00 3.08
1426 1808 1.377690 TAGCCCATTCCCCTTGTTCA 58.622 50.000 0.00 0.00 0.00 3.18
1435 1817 1.756538 CCACCAACAATAGCCCATTCC 59.243 52.381 0.00 0.00 0.00 3.01
1469 1851 2.125673 GACACCACGCGCCATAGT 60.126 61.111 5.73 0.00 0.00 2.12
1512 1894 5.543405 AGCTCTAATACATCTCCATCAGCTT 59.457 40.000 0.00 0.00 29.11 3.74
1560 1954 4.408276 AGTAGTAGAAGCACTCACCTTCA 58.592 43.478 4.24 0.00 40.83 3.02
1570 1964 2.490903 GGTGTCGGAAGTAGTAGAAGCA 59.509 50.000 0.00 0.00 0.00 3.91
1621 2015 1.599047 CCGGAACATGTGAGGAGCT 59.401 57.895 0.00 0.00 0.00 4.09
1645 2039 2.852075 ACCTTCTCCCCGGCAACA 60.852 61.111 0.00 0.00 0.00 3.33
1648 2042 3.319198 GTGACCTTCTCCCCGGCA 61.319 66.667 0.00 0.00 0.00 5.69
1660 2054 0.804989 GTGCAGCTACATTGGTGACC 59.195 55.000 0.00 0.00 37.61 4.02
1664 2058 0.692476 TCCAGTGCAGCTACATTGGT 59.308 50.000 23.62 0.00 45.16 3.67
1667 2061 3.054875 TGATCTTCCAGTGCAGCTACATT 60.055 43.478 0.00 0.00 0.00 2.71
1669 2063 1.901833 TGATCTTCCAGTGCAGCTACA 59.098 47.619 0.00 0.00 0.00 2.74
1675 2069 2.553028 GGAAACCTGATCTTCCAGTGCA 60.553 50.000 6.59 0.00 40.79 4.57
1693 2087 1.278127 GTCAAGAAGATCCCGGTGGAA 59.722 52.381 0.00 0.00 45.98 3.53
1712 2106 5.955959 AGAAGTAAACCTTTGTTTTCCCAGT 59.044 36.000 0.00 0.00 41.92 4.00
1714 2108 6.860790 AAGAAGTAAACCTTTGTTTTCCCA 57.139 33.333 0.00 0.00 41.92 4.37
1729 2123 9.349713 AGTTTGGTTCATGTTCATAAGAAGTAA 57.650 29.630 0.00 0.00 33.63 2.24
1759 2161 9.396022 GTTCAGAAGGTAAATCTTTCCATATCA 57.604 33.333 0.00 0.00 33.41 2.15
1760 2162 9.396022 TGTTCAGAAGGTAAATCTTTCCATATC 57.604 33.333 0.00 0.00 33.41 1.63
1765 2167 6.625960 GCCATGTTCAGAAGGTAAATCTTTCC 60.626 42.308 0.00 0.00 33.41 3.13
1766 2168 6.151817 AGCCATGTTCAGAAGGTAAATCTTTC 59.848 38.462 0.00 0.00 33.17 2.62
1767 2169 6.012745 AGCCATGTTCAGAAGGTAAATCTTT 58.987 36.000 0.00 0.00 0.00 2.52
1775 2177 3.019564 GCATAAGCCATGTTCAGAAGGT 58.980 45.455 0.00 0.00 36.95 3.50
1776 2178 3.285484 AGCATAAGCCATGTTCAGAAGG 58.715 45.455 0.00 0.00 43.56 3.46
1781 2183 4.523943 AGTTTGAAGCATAAGCCATGTTCA 59.476 37.500 0.00 8.50 43.56 3.18
1782 2184 5.064441 AGTTTGAAGCATAAGCCATGTTC 57.936 39.130 0.00 2.56 43.56 3.18
1844 2252 3.453091 CAGCATGAAGCAGTTGTGCCTA 61.453 50.000 0.00 0.00 46.46 3.93
1889 2297 0.404040 ATTGGGGTTCTTCGCTCCAA 59.596 50.000 0.00 0.00 41.07 3.53
1901 2309 0.331616 GCCAAGTCCAGTATTGGGGT 59.668 55.000 4.18 0.00 45.08 4.95
1905 2313 1.818674 GGGTTGCCAAGTCCAGTATTG 59.181 52.381 0.00 0.00 0.00 1.90
1922 2330 1.834540 ACCTTCCTTCTTTCAGGGGT 58.165 50.000 0.00 0.00 34.24 4.95
1978 3307 8.795513 TGTTTATGATTCATGAACAACTGTGAT 58.204 29.630 25.93 0.00 43.70 3.06
2018 3347 9.013229 TGAACAAATGAAAATAGCTGATAGTGT 57.987 29.630 0.00 0.00 0.00 3.55
2021 3350 8.965172 GCATGAACAAATGAAAATAGCTGATAG 58.035 33.333 0.00 0.00 0.00 2.08
2022 3351 8.468399 TGCATGAACAAATGAAAATAGCTGATA 58.532 29.630 0.00 0.00 0.00 2.15
2023 3352 7.324935 TGCATGAACAAATGAAAATAGCTGAT 58.675 30.769 0.00 0.00 0.00 2.90
2024 3353 6.689554 TGCATGAACAAATGAAAATAGCTGA 58.310 32.000 0.00 0.00 0.00 4.26
2025 3354 6.954616 TGCATGAACAAATGAAAATAGCTG 57.045 33.333 0.00 0.00 0.00 4.24
2026 3355 7.553334 AGATGCATGAACAAATGAAAATAGCT 58.447 30.769 2.46 0.00 0.00 3.32
2027 3356 7.766219 AGATGCATGAACAAATGAAAATAGC 57.234 32.000 2.46 0.00 0.00 2.97
2028 3357 8.114290 GCAAGATGCATGAACAAATGAAAATAG 58.886 33.333 2.46 0.00 44.26 1.73
2029 3358 7.966111 GCAAGATGCATGAACAAATGAAAATA 58.034 30.769 2.46 0.00 44.26 1.40
2030 3359 6.837992 GCAAGATGCATGAACAAATGAAAAT 58.162 32.000 2.46 0.00 44.26 1.82
2031 3360 6.230849 GCAAGATGCATGAACAAATGAAAA 57.769 33.333 2.46 0.00 44.26 2.29
2032 3361 5.849357 GCAAGATGCATGAACAAATGAAA 57.151 34.783 2.46 0.00 44.26 2.69
2051 3380 9.998106 GGTAAGTAGATATAATTCTTGAGGCAA 57.002 33.333 0.00 0.00 0.00 4.52
2052 3381 9.154632 TGGTAAGTAGATATAATTCTTGAGGCA 57.845 33.333 0.00 0.00 0.00 4.75
2065 3394 9.823647 CAGTTTCAGAACATGGTAAGTAGATAT 57.176 33.333 0.00 0.00 38.26 1.63
2066 3395 9.031537 TCAGTTTCAGAACATGGTAAGTAGATA 57.968 33.333 0.00 0.00 38.26 1.98
2067 3396 7.819900 GTCAGTTTCAGAACATGGTAAGTAGAT 59.180 37.037 0.00 0.00 38.26 1.98
2068 3397 7.152645 GTCAGTTTCAGAACATGGTAAGTAGA 58.847 38.462 0.00 0.00 38.26 2.59
2069 3398 6.929049 TGTCAGTTTCAGAACATGGTAAGTAG 59.071 38.462 0.00 0.00 38.26 2.57
2070 3399 6.822442 TGTCAGTTTCAGAACATGGTAAGTA 58.178 36.000 0.00 0.00 38.26 2.24
2071 3400 5.680619 TGTCAGTTTCAGAACATGGTAAGT 58.319 37.500 0.00 0.00 38.26 2.24
2072 3401 6.205464 ACATGTCAGTTTCAGAACATGGTAAG 59.795 38.462 16.14 0.00 39.19 2.34
2073 3402 6.061441 ACATGTCAGTTTCAGAACATGGTAA 58.939 36.000 16.14 0.00 39.19 2.85
2074 3403 5.620206 ACATGTCAGTTTCAGAACATGGTA 58.380 37.500 16.14 0.00 39.19 3.25
2075 3404 4.464008 ACATGTCAGTTTCAGAACATGGT 58.536 39.130 16.14 0.00 39.19 3.55
2076 3405 5.443185 AACATGTCAGTTTCAGAACATGG 57.557 39.130 16.14 2.23 39.19 3.66
2077 3406 6.017192 TGGTAACATGTCAGTTTCAGAACATG 60.017 38.462 11.61 11.61 46.17 3.21
2109 3438 1.150567 CTCGATTCCAGCTTCGGCAG 61.151 60.000 5.75 0.00 44.74 4.85
2110 3439 1.153568 CTCGATTCCAGCTTCGGCA 60.154 57.895 5.75 0.00 44.74 5.69
2119 3448 1.143838 CGCCACCATCTCGATTCCA 59.856 57.895 0.00 0.00 0.00 3.53
2130 3459 2.664851 CGTTCTTCAGCGCCACCA 60.665 61.111 2.29 0.00 0.00 4.17
2141 3470 0.468226 TCCAACCAGCAGACGTTCTT 59.532 50.000 0.00 0.00 0.00 2.52
2179 3508 1.845627 CTGGTGTGAGATGGGGCAGT 61.846 60.000 0.00 0.00 0.00 4.40
2183 3512 0.911525 ACTCCTGGTGTGAGATGGGG 60.912 60.000 0.00 0.00 33.95 4.96
2229 3558 1.524393 TAGGCCGTATCGTCGAGCA 60.524 57.895 0.00 0.00 0.00 4.26
2321 3650 3.415087 CCCCCTGGGCTTCTCCTG 61.415 72.222 7.39 0.00 35.35 3.86
2339 3668 1.673665 CCTTGACCTGCAGCCACTC 60.674 63.158 8.66 0.03 0.00 3.51
2380 3709 1.918467 CTGCCTCTCCATTCTGCCCA 61.918 60.000 0.00 0.00 0.00 5.36
2411 3740 0.994247 TGCCCACCATCAGACTCAAT 59.006 50.000 0.00 0.00 0.00 2.57
2418 3747 0.679002 CTTCCACTGCCCACCATCAG 60.679 60.000 0.00 0.00 36.45 2.90
2486 3815 2.685897 TGGTAACAGAACACAACCAAGC 59.314 45.455 0.00 0.00 46.17 4.01
2544 3873 3.217626 GCATCAAACTGATCTTAGGGGG 58.782 50.000 0.00 0.00 34.28 5.40
2545 3874 3.889815 TGCATCAAACTGATCTTAGGGG 58.110 45.455 0.00 0.00 34.28 4.79
2546 3875 4.277672 CCATGCATCAAACTGATCTTAGGG 59.722 45.833 0.00 0.00 34.28 3.53
2547 3876 4.277672 CCCATGCATCAAACTGATCTTAGG 59.722 45.833 0.00 0.00 34.28 2.69
2639 3968 9.768662 ACTTCTTGAAGACATAATTTGCAAAAT 57.231 25.926 17.19 10.81 0.00 1.82
2640 3969 9.598517 AACTTCTTGAAGACATAATTTGCAAAA 57.401 25.926 17.19 0.11 0.00 2.44
2641 3970 9.033481 CAACTTCTTGAAGACATAATTTGCAAA 57.967 29.630 15.44 15.44 0.00 3.68
2642 3971 7.169645 GCAACTTCTTGAAGACATAATTTGCAA 59.830 33.333 16.21 0.00 37.57 4.08
2643 3972 6.642131 GCAACTTCTTGAAGACATAATTTGCA 59.358 34.615 16.21 0.00 37.57 4.08
2644 3973 6.642131 TGCAACTTCTTGAAGACATAATTTGC 59.358 34.615 16.21 17.13 37.80 3.68
2645 3974 8.000285 GTGCAACTTCTTGAAGACATAATTTG 58.000 34.615 16.21 9.44 0.00 2.32
2681 4010 3.760684 GCAACCAAGGAAAGTGATCTCAT 59.239 43.478 0.00 0.00 0.00 2.90
2712 6544 9.524496 TTTGTAGTCAGATAACCAGTACTTAGA 57.476 33.333 0.00 0.00 0.00 2.10
2715 6547 9.490379 CTTTTTGTAGTCAGATAACCAGTACTT 57.510 33.333 0.00 0.00 0.00 2.24
2776 6611 9.169592 GGTAAGCTTGGTATATGTTACAGAAAA 57.830 33.333 9.86 0.00 0.00 2.29
2791 6626 7.597288 AAGAGTAATTTTTGGTAAGCTTGGT 57.403 32.000 9.86 0.00 0.00 3.67
2814 6649 9.740239 AGCGACTCGTATTTAGATAAATGTTAA 57.260 29.630 7.87 0.00 36.62 2.01
2818 6653 8.723777 TGTAGCGACTCGTATTTAGATAAATG 57.276 34.615 7.87 0.00 36.62 2.32
2833 6668 1.813786 AGTTGTCCTCTGTAGCGACTC 59.186 52.381 0.00 0.00 0.00 3.36
2901 6737 9.893305 AATCAGTAAACATGTTAAGCTTGTAAC 57.107 29.630 12.39 7.21 34.84 2.50
2916 6752 5.355071 GCTGACATGATCCAATCAGTAAACA 59.645 40.000 14.96 0.00 43.53 2.83
2920 6756 4.758773 TGCTGACATGATCCAATCAGTA 57.241 40.909 14.96 10.06 43.53 2.74
2921 6757 3.639672 TGCTGACATGATCCAATCAGT 57.360 42.857 14.96 0.00 43.53 3.41
2922 6758 3.692593 TGTTGCTGACATGATCCAATCAG 59.307 43.478 0.00 11.12 43.53 2.90
2926 6762 3.244665 ACTCTGTTGCTGACATGATCCAA 60.245 43.478 0.00 0.00 37.69 3.53
2927 6763 2.303890 ACTCTGTTGCTGACATGATCCA 59.696 45.455 0.00 0.00 37.69 3.41
2946 6799 5.013599 AGTTAGGCTTGAATTCTCCTTGACT 59.986 40.000 15.95 15.91 0.00 3.41
2970 6825 5.849510 TCTGTTAAACGACTCCTTGATCAA 58.150 37.500 8.12 8.12 0.00 2.57
2983 6845 7.526608 ACCATGTCATTGTTATCTGTTAAACG 58.473 34.615 0.00 0.00 0.00 3.60
2985 6847 8.511321 GTGACCATGTCATTGTTATCTGTTAAA 58.489 33.333 0.00 0.00 44.63 1.52
3055 6917 0.329261 TTTCATGAGCTCTGGGGTGG 59.671 55.000 16.19 0.00 0.00 4.61
3056 6918 1.815003 GTTTTCATGAGCTCTGGGGTG 59.185 52.381 16.19 6.32 0.00 4.61
3078 6940 6.098266 AGTGGGACAATTAGAGCTTTGTTTTT 59.902 34.615 3.15 0.00 44.16 1.94
3122 6984 5.584442 TCATTTGATGCCGATTGAGAAATG 58.416 37.500 0.00 0.00 32.88 2.32
3132 6994 2.027285 TCCTCTGTTCATTTGATGCCGA 60.027 45.455 0.00 0.00 0.00 5.54
3135 6997 6.034591 CAGATTTCCTCTGTTCATTTGATGC 58.965 40.000 0.00 0.00 45.42 3.91
3152 7014 6.091437 CCAGATTTTCAGTTGAGCAGATTTC 58.909 40.000 0.00 0.00 0.00 2.17
3160 7022 3.372206 CGGCTACCAGATTTTCAGTTGAG 59.628 47.826 0.00 0.00 0.00 3.02
3173 7035 2.403252 ATTTCAAGTCCGGCTACCAG 57.597 50.000 0.00 0.00 0.00 4.00
3177 7039 4.274602 TGTACAATTTCAAGTCCGGCTA 57.725 40.909 0.00 0.00 0.00 3.93
3179 7041 3.003897 TGTTGTACAATTTCAAGTCCGGC 59.996 43.478 12.26 0.00 0.00 6.13
3183 7045 5.772521 AGCCATGTTGTACAATTTCAAGTC 58.227 37.500 12.26 0.00 0.00 3.01
3212 7074 4.949856 TCCACTTAAAATGGAAGATCAGCC 59.050 41.667 5.78 0.00 43.43 4.85
3238 7100 6.183309 AGCATCCAGTCGTTTTAGAATTTC 57.817 37.500 0.00 0.00 0.00 2.17
3250 7112 1.338337 CCTGTACCTAGCATCCAGTCG 59.662 57.143 0.00 0.00 0.00 4.18
3256 7118 0.315568 CTCGGCCTGTACCTAGCATC 59.684 60.000 0.00 0.00 0.00 3.91
3379 7241 0.313987 GGTGCCAAGTGTACAAAGGC 59.686 55.000 21.36 21.36 45.41 4.35
3420 7282 4.697352 GCTCATCAAACTCTAATGGTGTGT 59.303 41.667 0.00 0.00 0.00 3.72
3434 7296 9.902196 CATTTTGCTACATATATGCTCATCAAA 57.098 29.630 12.79 12.07 0.00 2.69
3435 7297 9.287373 TCATTTTGCTACATATATGCTCATCAA 57.713 29.630 12.79 7.34 0.00 2.57
3458 7320 5.543790 ACTGGCAGTTTTATTCCCTTTTCAT 59.456 36.000 15.88 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.