Multiple sequence alignment - TraesCS3D01G135700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G135700 chr3D 100.000 2846 0 0 1 2846 94559110 94556265 0.000000e+00 5256.0
1 TraesCS3D01G135700 chr3D 97.368 1558 17 2 647 2203 94734676 94736210 0.000000e+00 2628.0
2 TraesCS3D01G135700 chr3D 94.867 565 27 2 2281 2845 94736187 94736749 0.000000e+00 881.0
3 TraesCS3D01G135700 chr3B 91.731 1693 55 31 540 2166 145357823 145356150 0.000000e+00 2272.0
4 TraesCS3D01G135700 chr3A 95.549 1011 38 5 924 1933 549228117 549227113 0.000000e+00 1611.0
5 TraesCS3D01G135700 chr2D 92.135 89 4 3 2207 2295 637111151 637111066 3.850000e-24 122.0
6 TraesCS3D01G135700 chr1D 92.857 84 4 2 2207 2290 80409523 80409442 1.380000e-23 121.0
7 TraesCS3D01G135700 chr1D 91.667 84 6 1 2204 2287 7443086 7443168 6.440000e-22 115.0
8 TraesCS3D01G135700 chr4D 90.588 85 7 1 2207 2291 508001002 508000919 8.330000e-21 111.0
9 TraesCS3D01G135700 chr4D 76.768 198 27 10 2309 2500 18691406 18691222 3.020000e-15 93.5
10 TraesCS3D01G135700 chr2A 75.000 212 36 12 2312 2519 21928651 21928849 6.530000e-12 82.4
11 TraesCS3D01G135700 chr2B 95.238 42 2 0 2459 2500 168238618 168238659 1.830000e-07 67.6
12 TraesCS3D01G135700 chr2B 92.857 42 3 0 2459 2500 776065650 776065691 8.510000e-06 62.1
13 TraesCS3D01G135700 chr7B 92.857 42 3 0 2459 2500 567611431 567611472 8.510000e-06 62.1
14 TraesCS3D01G135700 chr6B 92.857 42 3 0 2459 2500 477691569 477691528 8.510000e-06 62.1
15 TraesCS3D01G135700 chr6A 92.857 42 3 0 2459 2500 573150844 573150803 8.510000e-06 62.1
16 TraesCS3D01G135700 chr1B 92.683 41 3 0 2459 2499 374851439 374851399 3.060000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G135700 chr3D 94556265 94559110 2845 True 5256.0 5256 100.0000 1 2846 1 chr3D.!!$R1 2845
1 TraesCS3D01G135700 chr3D 94734676 94736749 2073 False 1754.5 2628 96.1175 647 2845 2 chr3D.!!$F1 2198
2 TraesCS3D01G135700 chr3B 145356150 145357823 1673 True 2272.0 2272 91.7310 540 2166 1 chr3B.!!$R1 1626
3 TraesCS3D01G135700 chr3A 549227113 549228117 1004 True 1611.0 1611 95.5490 924 1933 1 chr3A.!!$R1 1009

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
20 21 0.033504 ACTTGACTGCACGGACGAAT 59.966 50.0 0.0 0.0 0.0 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1859 1899 2.092211 CGCGCACTCTCGATTTACTTTT 59.908 45.455 8.75 0.0 0.0 2.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.538841 GACTTGACTGCACGGACG 58.461 61.111 0.00 0.00 0.00 4.79
18 19 1.007734 GACTTGACTGCACGGACGA 60.008 57.895 0.00 0.00 0.00 4.20
19 20 0.596600 GACTTGACTGCACGGACGAA 60.597 55.000 0.00 0.00 0.00 3.85
20 21 0.033504 ACTTGACTGCACGGACGAAT 59.966 50.000 0.00 0.00 0.00 3.34
21 22 1.148310 CTTGACTGCACGGACGAATT 58.852 50.000 0.00 0.00 0.00 2.17
22 23 2.288579 ACTTGACTGCACGGACGAATTA 60.289 45.455 0.00 0.00 0.00 1.40
23 24 2.442212 TGACTGCACGGACGAATTAA 57.558 45.000 0.00 0.00 0.00 1.40
24 25 2.756829 TGACTGCACGGACGAATTAAA 58.243 42.857 0.00 0.00 0.00 1.52
25 26 3.331150 TGACTGCACGGACGAATTAAAT 58.669 40.909 0.00 0.00 0.00 1.40
26 27 3.749088 TGACTGCACGGACGAATTAAATT 59.251 39.130 0.00 0.00 0.00 1.82
27 28 4.930405 TGACTGCACGGACGAATTAAATTA 59.070 37.500 0.00 0.00 0.00 1.40
28 29 5.163933 TGACTGCACGGACGAATTAAATTAC 60.164 40.000 0.00 0.00 0.00 1.89
29 30 4.691685 ACTGCACGGACGAATTAAATTACA 59.308 37.500 0.00 0.00 0.00 2.41
30 31 5.179742 ACTGCACGGACGAATTAAATTACAA 59.820 36.000 0.00 0.00 0.00 2.41
31 32 5.998553 TGCACGGACGAATTAAATTACAAA 58.001 33.333 0.00 0.00 0.00 2.83
32 33 6.613233 TGCACGGACGAATTAAATTACAAAT 58.387 32.000 0.00 0.00 0.00 2.32
33 34 7.749808 TGCACGGACGAATTAAATTACAAATA 58.250 30.769 0.00 0.00 0.00 1.40
34 35 7.693120 TGCACGGACGAATTAAATTACAAATAC 59.307 33.333 0.00 0.00 0.00 1.89
35 36 7.693120 GCACGGACGAATTAAATTACAAATACA 59.307 33.333 0.00 0.00 0.00 2.29
36 37 8.991810 CACGGACGAATTAAATTACAAATACAC 58.008 33.333 0.00 0.00 0.00 2.90
37 38 7.899330 ACGGACGAATTAAATTACAAATACACG 59.101 33.333 0.00 0.00 0.00 4.49
38 39 8.109391 CGGACGAATTAAATTACAAATACACGA 58.891 33.333 0.00 0.00 0.00 4.35
39 40 9.925268 GGACGAATTAAATTACAAATACACGAT 57.075 29.630 0.00 0.00 0.00 3.73
41 42 9.925268 ACGAATTAAATTACAAATACACGATCC 57.075 29.630 0.00 0.00 0.00 3.36
42 43 9.923786 CGAATTAAATTACAAATACACGATCCA 57.076 29.630 0.00 0.00 0.00 3.41
46 47 7.455641 AAATTACAAATACACGATCCAACCA 57.544 32.000 0.00 0.00 0.00 3.67
47 48 6.677781 ATTACAAATACACGATCCAACCAG 57.322 37.500 0.00 0.00 0.00 4.00
48 49 2.747446 ACAAATACACGATCCAACCAGC 59.253 45.455 0.00 0.00 0.00 4.85
49 50 2.038387 AATACACGATCCAACCAGCC 57.962 50.000 0.00 0.00 0.00 4.85
50 51 0.908910 ATACACGATCCAACCAGCCA 59.091 50.000 0.00 0.00 0.00 4.75
51 52 0.687920 TACACGATCCAACCAGCCAA 59.312 50.000 0.00 0.00 0.00 4.52
52 53 0.889186 ACACGATCCAACCAGCCAAC 60.889 55.000 0.00 0.00 0.00 3.77
53 54 0.606401 CACGATCCAACCAGCCAACT 60.606 55.000 0.00 0.00 0.00 3.16
54 55 0.606401 ACGATCCAACCAGCCAACTG 60.606 55.000 0.00 0.00 44.05 3.16
70 71 2.161831 CTGGCGATTGCGAGTTTCA 58.838 52.632 8.73 0.00 41.52 2.69
71 72 0.516877 CTGGCGATTGCGAGTTTCAA 59.483 50.000 8.73 0.00 41.52 2.69
72 73 0.947960 TGGCGATTGCGAGTTTCAAA 59.052 45.000 0.00 0.00 44.10 2.69
73 74 1.335182 TGGCGATTGCGAGTTTCAAAA 59.665 42.857 0.00 0.00 44.10 2.44
74 75 2.223595 TGGCGATTGCGAGTTTCAAAAA 60.224 40.909 0.00 0.00 44.10 1.94
75 76 2.986479 GGCGATTGCGAGTTTCAAAAAT 59.014 40.909 0.00 0.00 44.10 1.82
76 77 3.059438 GGCGATTGCGAGTTTCAAAAATC 59.941 43.478 0.00 0.00 44.10 2.17
77 78 3.059438 GCGATTGCGAGTTTCAAAAATCC 59.941 43.478 0.00 0.00 40.82 3.01
78 79 4.475944 CGATTGCGAGTTTCAAAAATCCT 58.524 39.130 0.00 0.00 40.82 3.24
79 80 5.627172 CGATTGCGAGTTTCAAAAATCCTA 58.373 37.500 0.00 0.00 40.82 2.94
80 81 5.734498 CGATTGCGAGTTTCAAAAATCCTAG 59.266 40.000 0.00 0.00 40.82 3.02
81 82 6.402118 CGATTGCGAGTTTCAAAAATCCTAGA 60.402 38.462 0.00 0.00 40.82 2.43
82 83 6.627395 TTGCGAGTTTCAAAAATCCTAGAA 57.373 33.333 0.00 0.00 29.78 2.10
83 84 6.627395 TGCGAGTTTCAAAAATCCTAGAAA 57.373 33.333 0.00 0.00 29.78 2.52
84 85 6.668323 TGCGAGTTTCAAAAATCCTAGAAAG 58.332 36.000 0.00 0.00 31.35 2.62
85 86 6.262273 TGCGAGTTTCAAAAATCCTAGAAAGT 59.738 34.615 0.00 0.00 36.61 2.66
86 87 6.797513 GCGAGTTTCAAAAATCCTAGAAAGTC 59.202 38.462 0.00 0.00 42.62 3.01
88 89 8.084590 GAGTTTCAAAAATCCTAGAAAGTCGA 57.915 34.615 0.00 0.00 39.31 4.20
89 90 8.446599 AGTTTCAAAAATCCTAGAAAGTCGAA 57.553 30.769 0.00 0.00 30.14 3.71
90 91 8.899771 AGTTTCAAAAATCCTAGAAAGTCGAAA 58.100 29.630 0.00 0.00 30.14 3.46
91 92 8.955002 GTTTCAAAAATCCTAGAAAGTCGAAAC 58.045 33.333 0.00 0.00 33.12 2.78
92 93 7.198306 TCAAAAATCCTAGAAAGTCGAAACC 57.802 36.000 0.00 0.00 0.00 3.27
93 94 6.206048 TCAAAAATCCTAGAAAGTCGAAACCC 59.794 38.462 0.00 0.00 0.00 4.11
94 95 5.500546 AAATCCTAGAAAGTCGAAACCCT 57.499 39.130 0.00 0.00 0.00 4.34
95 96 4.739587 ATCCTAGAAAGTCGAAACCCTC 57.260 45.455 0.00 0.00 0.00 4.30
96 97 3.503365 TCCTAGAAAGTCGAAACCCTCA 58.497 45.455 0.00 0.00 0.00 3.86
97 98 4.094476 TCCTAGAAAGTCGAAACCCTCAT 58.906 43.478 0.00 0.00 0.00 2.90
98 99 4.081642 TCCTAGAAAGTCGAAACCCTCATG 60.082 45.833 0.00 0.00 0.00 3.07
99 100 4.081642 CCTAGAAAGTCGAAACCCTCATGA 60.082 45.833 0.00 0.00 0.00 3.07
100 101 4.351874 AGAAAGTCGAAACCCTCATGAA 57.648 40.909 0.00 0.00 0.00 2.57
101 102 4.911390 AGAAAGTCGAAACCCTCATGAAT 58.089 39.130 0.00 0.00 0.00 2.57
102 103 4.938226 AGAAAGTCGAAACCCTCATGAATC 59.062 41.667 0.00 0.00 0.00 2.52
103 104 3.268023 AGTCGAAACCCTCATGAATCC 57.732 47.619 0.00 0.00 0.00 3.01
104 105 2.571653 AGTCGAAACCCTCATGAATCCA 59.428 45.455 0.00 0.00 0.00 3.41
105 106 3.200825 AGTCGAAACCCTCATGAATCCAT 59.799 43.478 0.00 0.00 0.00 3.41
106 107 4.408921 AGTCGAAACCCTCATGAATCCATA 59.591 41.667 0.00 0.00 0.00 2.74
107 108 5.104527 AGTCGAAACCCTCATGAATCCATAA 60.105 40.000 0.00 0.00 0.00 1.90
108 109 5.765182 GTCGAAACCCTCATGAATCCATAAT 59.235 40.000 0.00 0.00 0.00 1.28
109 110 6.263168 GTCGAAACCCTCATGAATCCATAATT 59.737 38.462 0.00 0.00 0.00 1.40
110 111 6.486657 TCGAAACCCTCATGAATCCATAATTC 59.513 38.462 0.00 0.00 43.54 2.17
111 112 6.488006 CGAAACCCTCATGAATCCATAATTCT 59.512 38.462 0.00 0.00 43.61 2.40
112 113 7.521099 CGAAACCCTCATGAATCCATAATTCTG 60.521 40.741 0.00 0.00 43.61 3.02
113 114 5.075493 ACCCTCATGAATCCATAATTCTGC 58.925 41.667 0.00 0.00 43.61 4.26
114 115 5.074804 CCCTCATGAATCCATAATTCTGCA 58.925 41.667 0.00 0.00 43.61 4.41
115 116 5.715279 CCCTCATGAATCCATAATTCTGCAT 59.285 40.000 0.00 0.00 43.61 3.96
116 117 6.350194 CCCTCATGAATCCATAATTCTGCATG 60.350 42.308 0.00 0.00 43.61 4.06
117 118 6.208797 CCTCATGAATCCATAATTCTGCATGT 59.791 38.462 0.00 0.00 43.61 3.21
118 119 7.392393 CCTCATGAATCCATAATTCTGCATGTA 59.608 37.037 0.00 0.00 43.61 2.29
119 120 8.694581 TCATGAATCCATAATTCTGCATGTAA 57.305 30.769 0.00 0.00 43.61 2.41
120 121 8.789762 TCATGAATCCATAATTCTGCATGTAAG 58.210 33.333 0.00 0.00 43.61 2.34
121 122 8.573885 CATGAATCCATAATTCTGCATGTAAGT 58.426 33.333 0.00 0.00 43.61 2.24
122 123 7.933396 TGAATCCATAATTCTGCATGTAAGTG 58.067 34.615 0.00 0.00 43.61 3.16
123 124 7.774625 TGAATCCATAATTCTGCATGTAAGTGA 59.225 33.333 0.00 0.00 43.61 3.41
124 125 6.925610 TCCATAATTCTGCATGTAAGTGAC 57.074 37.500 0.00 0.00 0.00 3.67
125 126 6.413892 TCCATAATTCTGCATGTAAGTGACA 58.586 36.000 0.00 0.00 43.97 3.58
126 127 6.883756 TCCATAATTCTGCATGTAAGTGACAA 59.116 34.615 0.00 0.00 42.78 3.18
127 128 6.968904 CCATAATTCTGCATGTAAGTGACAAC 59.031 38.462 0.00 0.00 42.78 3.32
128 129 7.361971 CCATAATTCTGCATGTAAGTGACAACA 60.362 37.037 0.00 0.00 42.78 3.33
129 130 5.618056 ATTCTGCATGTAAGTGACAACAG 57.382 39.130 7.44 7.44 42.78 3.16
130 131 4.071961 TCTGCATGTAAGTGACAACAGT 57.928 40.909 11.81 0.00 42.78 3.55
131 132 4.058124 TCTGCATGTAAGTGACAACAGTC 58.942 43.478 11.81 0.00 42.78 3.51
132 133 3.802866 TGCATGTAAGTGACAACAGTCA 58.197 40.909 0.00 0.00 42.78 3.41
133 134 3.809279 TGCATGTAAGTGACAACAGTCAG 59.191 43.478 0.00 0.00 42.54 3.51
134 135 3.364366 GCATGTAAGTGACAACAGTCAGC 60.364 47.826 0.00 0.00 42.54 4.26
135 136 2.469826 TGTAAGTGACAACAGTCAGCG 58.530 47.619 0.00 0.00 42.54 5.18
136 137 2.100087 TGTAAGTGACAACAGTCAGCGA 59.900 45.455 0.00 0.00 42.54 4.93
137 138 1.858091 AAGTGACAACAGTCAGCGAG 58.142 50.000 0.00 0.00 42.54 5.03
138 139 0.747255 AGTGACAACAGTCAGCGAGT 59.253 50.000 0.00 0.00 42.54 4.18
139 140 1.954382 AGTGACAACAGTCAGCGAGTA 59.046 47.619 0.00 0.00 42.54 2.59
140 141 2.030717 AGTGACAACAGTCAGCGAGTAG 60.031 50.000 0.00 0.00 42.54 2.57
141 142 3.483960 GTGACAACAGTCAGCGAGTAGC 61.484 54.545 0.00 0.00 42.54 3.58
150 151 2.484203 GCGAGTAGCTTCCGTCGT 59.516 61.111 0.00 0.00 44.04 4.34
151 152 1.583194 GCGAGTAGCTTCCGTCGTC 60.583 63.158 0.00 0.00 44.04 4.20
152 153 1.062206 CGAGTAGCTTCCGTCGTCC 59.938 63.158 0.00 0.00 0.00 4.79
153 154 1.062206 GAGTAGCTTCCGTCGTCCG 59.938 63.158 0.00 0.00 0.00 4.79
168 169 2.675423 CCGGTGAGTCGGGTGAGA 60.675 66.667 0.00 0.00 45.78 3.27
169 170 2.052690 CCGGTGAGTCGGGTGAGAT 61.053 63.158 0.00 0.00 45.78 2.75
170 171 0.750546 CCGGTGAGTCGGGTGAGATA 60.751 60.000 0.00 0.00 45.78 1.98
171 172 1.100510 CGGTGAGTCGGGTGAGATAA 58.899 55.000 0.00 0.00 0.00 1.75
172 173 1.681793 CGGTGAGTCGGGTGAGATAAT 59.318 52.381 0.00 0.00 0.00 1.28
173 174 2.543861 CGGTGAGTCGGGTGAGATAATG 60.544 54.545 0.00 0.00 0.00 1.90
174 175 2.693591 GGTGAGTCGGGTGAGATAATGA 59.306 50.000 0.00 0.00 0.00 2.57
175 176 3.243569 GGTGAGTCGGGTGAGATAATGAG 60.244 52.174 0.00 0.00 0.00 2.90
176 177 2.959030 TGAGTCGGGTGAGATAATGAGG 59.041 50.000 0.00 0.00 0.00 3.86
177 178 3.223435 GAGTCGGGTGAGATAATGAGGA 58.777 50.000 0.00 0.00 0.00 3.71
178 179 2.959707 AGTCGGGTGAGATAATGAGGAC 59.040 50.000 0.00 0.00 0.00 3.85
179 180 1.954382 TCGGGTGAGATAATGAGGACG 59.046 52.381 0.00 0.00 0.00 4.79
180 181 1.603172 CGGGTGAGATAATGAGGACGC 60.603 57.143 0.00 0.00 0.00 5.19
181 182 1.603172 GGGTGAGATAATGAGGACGCG 60.603 57.143 3.53 3.53 0.00 6.01
182 183 1.337071 GGTGAGATAATGAGGACGCGA 59.663 52.381 15.93 0.00 0.00 5.87
183 184 2.223735 GGTGAGATAATGAGGACGCGAA 60.224 50.000 15.93 0.00 0.00 4.70
184 185 3.444916 GTGAGATAATGAGGACGCGAAA 58.555 45.455 15.93 0.00 0.00 3.46
185 186 3.243177 GTGAGATAATGAGGACGCGAAAC 59.757 47.826 15.93 1.49 0.00 2.78
198 199 1.802839 GCGAAACGAATGAGATGTGC 58.197 50.000 0.00 0.00 0.00 4.57
199 200 1.848186 GCGAAACGAATGAGATGTGCG 60.848 52.381 0.00 0.00 0.00 5.34
200 201 1.802839 GAAACGAATGAGATGTGCGC 58.197 50.000 0.00 0.00 0.00 6.09
201 202 0.095245 AAACGAATGAGATGTGCGCG 59.905 50.000 0.00 0.00 0.00 6.86
202 203 1.695893 AACGAATGAGATGTGCGCGG 61.696 55.000 8.83 0.00 0.00 6.46
203 204 1.878069 CGAATGAGATGTGCGCGGA 60.878 57.895 8.83 0.00 0.00 5.54
204 205 1.420641 CGAATGAGATGTGCGCGGAA 61.421 55.000 8.83 0.00 0.00 4.30
205 206 0.302890 GAATGAGATGTGCGCGGAAG 59.697 55.000 8.83 0.00 0.00 3.46
206 207 1.091771 AATGAGATGTGCGCGGAAGG 61.092 55.000 8.83 0.00 0.00 3.46
207 208 3.567797 GAGATGTGCGCGGAAGGC 61.568 66.667 8.83 0.00 38.69 4.35
216 217 2.742372 GCGGAAGGCGCAGAAGAA 60.742 61.111 10.83 0.00 0.00 2.52
217 218 2.325082 GCGGAAGGCGCAGAAGAAA 61.325 57.895 10.83 0.00 0.00 2.52
218 219 1.852067 GCGGAAGGCGCAGAAGAAAA 61.852 55.000 10.83 0.00 0.00 2.29
219 220 0.591170 CGGAAGGCGCAGAAGAAAAA 59.409 50.000 10.83 0.00 0.00 1.94
284 285 9.824534 AACTTTAGTTTGAAGCAAATTTTGTTG 57.175 25.926 10.65 0.00 35.74 3.33
285 286 9.213799 ACTTTAGTTTGAAGCAAATTTTGTTGA 57.786 25.926 10.65 0.00 35.74 3.18
286 287 9.476761 CTTTAGTTTGAAGCAAATTTTGTTGAC 57.523 29.630 10.65 4.32 35.74 3.18
287 288 6.093532 AGTTTGAAGCAAATTTTGTTGACG 57.906 33.333 10.65 0.00 35.74 4.35
288 289 5.637387 AGTTTGAAGCAAATTTTGTTGACGT 59.363 32.000 10.65 0.00 35.74 4.34
289 290 5.694674 TTGAAGCAAATTTTGTTGACGTC 57.305 34.783 9.11 9.11 0.00 4.34
290 291 4.738124 TGAAGCAAATTTTGTTGACGTCA 58.262 34.783 15.76 15.76 0.00 4.35
291 292 5.164233 TGAAGCAAATTTTGTTGACGTCAA 58.836 33.333 26.53 26.53 0.00 3.18
292 293 5.635280 TGAAGCAAATTTTGTTGACGTCAAA 59.365 32.000 31.20 17.11 37.63 2.69
293 294 6.312426 TGAAGCAAATTTTGTTGACGTCAAAT 59.688 30.769 31.20 18.60 37.63 2.32
294 295 7.489435 TGAAGCAAATTTTGTTGACGTCAAATA 59.511 29.630 31.20 20.41 37.63 1.40
295 296 7.763172 AGCAAATTTTGTTGACGTCAAATAA 57.237 28.000 31.20 24.44 37.63 1.40
296 297 8.190888 AGCAAATTTTGTTGACGTCAAATAAA 57.809 26.923 31.20 28.81 37.63 1.40
297 298 8.660373 AGCAAATTTTGTTGACGTCAAATAAAA 58.340 25.926 33.35 33.35 37.94 1.52
298 299 9.432077 GCAAATTTTGTTGACGTCAAATAAAAT 57.568 25.926 34.08 34.08 41.41 1.82
305 306 9.834628 TTGTTGACGTCAAATAAAATAAGATCC 57.165 29.630 31.20 14.43 37.63 3.36
306 307 9.004717 TGTTGACGTCAAATAAAATAAGATCCA 57.995 29.630 31.20 16.72 37.63 3.41
307 308 9.274065 GTTGACGTCAAATAAAATAAGATCCAC 57.726 33.333 31.20 10.62 37.63 4.02
308 309 8.554835 TGACGTCAAATAAAATAAGATCCACA 57.445 30.769 17.62 0.00 0.00 4.17
309 310 9.004717 TGACGTCAAATAAAATAAGATCCACAA 57.995 29.630 17.62 0.00 0.00 3.33
321 322 9.838339 AAATAAGATCCACAATTCTAACGATCT 57.162 29.630 0.00 0.00 38.42 2.75
322 323 8.824159 ATAAGATCCACAATTCTAACGATCTG 57.176 34.615 0.00 0.00 37.21 2.90
323 324 6.227298 AGATCCACAATTCTAACGATCTGT 57.773 37.500 0.00 0.00 36.11 3.41
324 325 6.644347 AGATCCACAATTCTAACGATCTGTT 58.356 36.000 7.81 7.81 44.78 3.16
325 326 6.536582 AGATCCACAATTCTAACGATCTGTTG 59.463 38.462 11.54 0.00 42.01 3.33
326 327 5.789521 TCCACAATTCTAACGATCTGTTGA 58.210 37.500 11.54 6.09 42.01 3.18
327 328 6.406370 TCCACAATTCTAACGATCTGTTGAT 58.594 36.000 11.54 0.00 42.01 2.57
328 329 7.552459 TCCACAATTCTAACGATCTGTTGATA 58.448 34.615 11.54 0.47 42.01 2.15
329 330 7.491372 TCCACAATTCTAACGATCTGTTGATAC 59.509 37.037 11.54 0.00 42.01 2.24
330 331 7.492669 CCACAATTCTAACGATCTGTTGATACT 59.507 37.037 11.54 0.00 42.01 2.12
331 332 8.323854 CACAATTCTAACGATCTGTTGATACTG 58.676 37.037 11.54 7.27 42.01 2.74
332 333 8.251026 ACAATTCTAACGATCTGTTGATACTGA 58.749 33.333 11.54 0.00 42.01 3.41
333 334 9.087424 CAATTCTAACGATCTGTTGATACTGAA 57.913 33.333 11.54 7.59 42.01 3.02
334 335 9.653287 AATTCTAACGATCTGTTGATACTGAAA 57.347 29.630 11.54 0.00 42.01 2.69
335 336 8.462143 TTCTAACGATCTGTTGATACTGAAAC 57.538 34.615 11.54 0.00 42.01 2.78
336 337 7.827701 TCTAACGATCTGTTGATACTGAAACT 58.172 34.615 11.54 0.00 42.01 2.66
337 338 8.953313 TCTAACGATCTGTTGATACTGAAACTA 58.047 33.333 11.54 0.00 42.01 2.24
338 339 9.569167 CTAACGATCTGTTGATACTGAAACTAA 57.431 33.333 11.54 0.00 42.01 2.24
340 341 8.635877 ACGATCTGTTGATACTGAAACTAATC 57.364 34.615 0.00 0.00 36.09 1.75
341 342 8.470805 ACGATCTGTTGATACTGAAACTAATCT 58.529 33.333 0.00 0.00 36.09 2.40
342 343 9.952188 CGATCTGTTGATACTGAAACTAATCTA 57.048 33.333 0.00 0.00 36.09 1.98
364 365 9.869757 ATCTATTTGTTTTAGGTTGTATTTGCC 57.130 29.630 0.00 0.00 0.00 4.52
365 366 8.024285 TCTATTTGTTTTAGGTTGTATTTGCCG 58.976 33.333 0.00 0.00 0.00 5.69
366 367 5.769484 TTGTTTTAGGTTGTATTTGCCGA 57.231 34.783 0.00 0.00 0.00 5.54
367 368 5.769484 TGTTTTAGGTTGTATTTGCCGAA 57.231 34.783 0.00 0.00 0.00 4.30
368 369 5.521544 TGTTTTAGGTTGTATTTGCCGAAC 58.478 37.500 0.00 0.00 0.00 3.95
369 370 5.067413 TGTTTTAGGTTGTATTTGCCGAACA 59.933 36.000 0.00 0.00 0.00 3.18
370 371 4.752661 TTAGGTTGTATTTGCCGAACAC 57.247 40.909 0.00 0.00 0.00 3.32
371 372 2.577700 AGGTTGTATTTGCCGAACACA 58.422 42.857 0.00 0.00 0.00 3.72
372 373 2.952978 AGGTTGTATTTGCCGAACACAA 59.047 40.909 0.00 0.00 0.00 3.33
373 374 3.381908 AGGTTGTATTTGCCGAACACAAA 59.618 39.130 0.00 0.00 40.98 2.83
374 375 4.113354 GGTTGTATTTGCCGAACACAAAA 58.887 39.130 0.00 0.00 40.19 2.44
375 376 4.747605 GGTTGTATTTGCCGAACACAAAAT 59.252 37.500 0.00 0.00 40.19 1.82
376 377 5.921408 GGTTGTATTTGCCGAACACAAAATA 59.079 36.000 0.00 0.00 40.19 1.40
377 378 6.421202 GGTTGTATTTGCCGAACACAAAATAA 59.579 34.615 0.00 0.00 40.19 1.40
378 379 7.117092 GGTTGTATTTGCCGAACACAAAATAAT 59.883 33.333 0.00 0.00 40.19 1.28
379 380 9.130312 GTTGTATTTGCCGAACACAAAATAATA 57.870 29.630 0.00 0.00 40.19 0.98
380 381 8.903570 TGTATTTGCCGAACACAAAATAATAG 57.096 30.769 0.00 0.00 40.19 1.73
381 382 8.516234 TGTATTTGCCGAACACAAAATAATAGT 58.484 29.630 0.00 0.00 40.19 2.12
382 383 9.991388 GTATTTGCCGAACACAAAATAATAGTA 57.009 29.630 0.00 0.00 40.19 1.82
387 388 9.332502 TGCCGAACACAAAATAATAGTATATGT 57.667 29.630 0.00 0.00 0.00 2.29
388 389 9.807386 GCCGAACACAAAATAATAGTATATGTC 57.193 33.333 0.16 0.00 0.00 3.06
446 447 9.642343 ACTATGATTTTCTCCTTTATAAACCCC 57.358 33.333 0.00 0.00 0.00 4.95
447 448 7.582667 ATGATTTTCTCCTTTATAAACCCCG 57.417 36.000 0.00 0.00 0.00 5.73
448 449 5.358725 TGATTTTCTCCTTTATAAACCCCGC 59.641 40.000 0.00 0.00 0.00 6.13
449 450 3.286329 TTCTCCTTTATAAACCCCGCC 57.714 47.619 0.00 0.00 0.00 6.13
450 451 2.198336 TCTCCTTTATAAACCCCGCCA 58.802 47.619 0.00 0.00 0.00 5.69
451 452 2.092807 TCTCCTTTATAAACCCCGCCAC 60.093 50.000 0.00 0.00 0.00 5.01
452 453 1.018910 CCTTTATAAACCCCGCCACG 58.981 55.000 0.00 0.00 0.00 4.94
453 454 0.379316 CTTTATAAACCCCGCCACGC 59.621 55.000 0.00 0.00 0.00 5.34
454 455 1.031029 TTTATAAACCCCGCCACGCC 61.031 55.000 0.00 0.00 0.00 5.68
455 456 1.912826 TTATAAACCCCGCCACGCCT 61.913 55.000 0.00 0.00 0.00 5.52
456 457 2.314415 TATAAACCCCGCCACGCCTC 62.314 60.000 0.00 0.00 0.00 4.70
461 462 3.737172 CCCGCCACGCCTCAAAAG 61.737 66.667 0.00 0.00 0.00 2.27
462 463 2.668212 CCGCCACGCCTCAAAAGA 60.668 61.111 0.00 0.00 0.00 2.52
463 464 2.258013 CCGCCACGCCTCAAAAGAA 61.258 57.895 0.00 0.00 0.00 2.52
464 465 1.586154 CCGCCACGCCTCAAAAGAAT 61.586 55.000 0.00 0.00 0.00 2.40
465 466 0.240945 CGCCACGCCTCAAAAGAATT 59.759 50.000 0.00 0.00 0.00 2.17
466 467 1.729149 CGCCACGCCTCAAAAGAATTC 60.729 52.381 0.00 0.00 0.00 2.17
467 468 1.402852 GCCACGCCTCAAAAGAATTCC 60.403 52.381 0.65 0.00 0.00 3.01
468 469 2.162681 CCACGCCTCAAAAGAATTCCT 58.837 47.619 0.65 0.00 0.00 3.36
469 470 2.558359 CCACGCCTCAAAAGAATTCCTT 59.442 45.455 0.65 0.00 36.47 3.36
470 471 3.366374 CCACGCCTCAAAAGAATTCCTTC 60.366 47.826 0.65 0.00 33.02 3.46
471 472 2.820197 ACGCCTCAAAAGAATTCCTTCC 59.180 45.455 0.65 0.00 33.02 3.46
472 473 3.084786 CGCCTCAAAAGAATTCCTTCCT 58.915 45.455 0.65 0.00 33.02 3.36
473 474 3.507622 CGCCTCAAAAGAATTCCTTCCTT 59.492 43.478 0.65 0.00 33.02 3.36
474 475 4.379918 CGCCTCAAAAGAATTCCTTCCTTC 60.380 45.833 0.65 0.00 33.02 3.46
475 476 4.379918 GCCTCAAAAGAATTCCTTCCTTCG 60.380 45.833 0.65 0.00 33.02 3.79
476 477 4.379918 CCTCAAAAGAATTCCTTCCTTCGC 60.380 45.833 0.65 0.00 33.02 4.70
477 478 3.506067 TCAAAAGAATTCCTTCCTTCGCC 59.494 43.478 0.65 0.00 33.02 5.54
478 479 2.879103 AAGAATTCCTTCCTTCGCCA 57.121 45.000 0.65 0.00 31.27 5.69
479 480 3.372440 AAGAATTCCTTCCTTCGCCAT 57.628 42.857 0.65 0.00 31.27 4.40
480 481 3.372440 AGAATTCCTTCCTTCGCCATT 57.628 42.857 0.65 0.00 31.27 3.16
481 482 3.019564 AGAATTCCTTCCTTCGCCATTG 58.980 45.455 0.65 0.00 31.27 2.82
482 483 2.806945 ATTCCTTCCTTCGCCATTGA 57.193 45.000 0.00 0.00 0.00 2.57
483 484 1.821216 TTCCTTCCTTCGCCATTGAC 58.179 50.000 0.00 0.00 0.00 3.18
484 485 0.690192 TCCTTCCTTCGCCATTGACA 59.310 50.000 0.00 0.00 0.00 3.58
485 486 1.073125 TCCTTCCTTCGCCATTGACAA 59.927 47.619 0.00 0.00 0.00 3.18
486 487 1.200020 CCTTCCTTCGCCATTGACAAC 59.800 52.381 0.00 0.00 0.00 3.32
487 488 1.879380 CTTCCTTCGCCATTGACAACA 59.121 47.619 0.00 0.00 0.00 3.33
488 489 1.974265 TCCTTCGCCATTGACAACAA 58.026 45.000 0.00 0.00 40.42 2.83
489 490 1.606668 TCCTTCGCCATTGACAACAAC 59.393 47.619 0.00 0.00 38.90 3.32
490 491 1.336440 CCTTCGCCATTGACAACAACA 59.664 47.619 0.00 0.00 38.90 3.33
491 492 2.223688 CCTTCGCCATTGACAACAACAA 60.224 45.455 0.00 0.00 38.90 2.83
492 493 2.483583 TCGCCATTGACAACAACAAC 57.516 45.000 0.00 0.00 38.90 3.32
493 494 1.745653 TCGCCATTGACAACAACAACA 59.254 42.857 0.00 0.00 38.90 3.33
494 495 2.164422 TCGCCATTGACAACAACAACAA 59.836 40.909 0.00 0.00 38.90 2.83
495 496 2.281234 CGCCATTGACAACAACAACAAC 59.719 45.455 0.00 0.00 38.90 3.32
496 497 3.257393 GCCATTGACAACAACAACAACA 58.743 40.909 0.00 0.00 38.90 3.33
497 498 3.681897 GCCATTGACAACAACAACAACAA 59.318 39.130 0.00 0.00 38.90 2.83
498 499 4.435386 GCCATTGACAACAACAACAACAAC 60.435 41.667 0.00 0.00 38.90 3.32
499 500 4.687948 CCATTGACAACAACAACAACAACA 59.312 37.500 0.00 0.00 38.90 3.33
500 501 5.178252 CCATTGACAACAACAACAACAACAA 59.822 36.000 0.00 0.00 38.90 2.83
501 502 5.643339 TTGACAACAACAACAACAACAAC 57.357 34.783 0.00 0.00 0.00 3.32
502 503 4.682787 TGACAACAACAACAACAACAACA 58.317 34.783 0.00 0.00 0.00 3.33
503 504 5.109210 TGACAACAACAACAACAACAACAA 58.891 33.333 0.00 0.00 0.00 2.83
504 505 5.005779 TGACAACAACAACAACAACAACAAC 59.994 36.000 0.00 0.00 0.00 3.32
505 506 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
506 507 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
507 508 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
508 509 4.271291 ACAACAACAACAACAACAACAACC 59.729 37.500 0.00 0.00 0.00 3.77
509 510 4.060038 ACAACAACAACAACAACAACCA 57.940 36.364 0.00 0.00 0.00 3.67
510 511 3.804873 ACAACAACAACAACAACAACCAC 59.195 39.130 0.00 0.00 0.00 4.16
511 512 3.033368 ACAACAACAACAACAACCACC 57.967 42.857 0.00 0.00 0.00 4.61
512 513 2.365617 ACAACAACAACAACAACCACCA 59.634 40.909 0.00 0.00 0.00 4.17
513 514 2.734079 CAACAACAACAACAACCACCAC 59.266 45.455 0.00 0.00 0.00 4.16
514 515 1.273886 ACAACAACAACAACCACCACC 59.726 47.619 0.00 0.00 0.00 4.61
515 516 1.273606 CAACAACAACAACCACCACCA 59.726 47.619 0.00 0.00 0.00 4.17
516 517 0.892063 ACAACAACAACCACCACCAC 59.108 50.000 0.00 0.00 0.00 4.16
517 518 0.174617 CAACAACAACCACCACCACC 59.825 55.000 0.00 0.00 0.00 4.61
518 519 0.251832 AACAACAACCACCACCACCA 60.252 50.000 0.00 0.00 0.00 4.17
519 520 0.968393 ACAACAACCACCACCACCAC 60.968 55.000 0.00 0.00 0.00 4.16
520 521 1.380650 AACAACCACCACCACCACC 60.381 57.895 0.00 0.00 0.00 4.61
521 522 2.156496 AACAACCACCACCACCACCA 62.156 55.000 0.00 0.00 0.00 4.17
522 523 2.124693 CAACCACCACCACCACCAC 61.125 63.158 0.00 0.00 0.00 4.16
523 524 3.367907 AACCACCACCACCACCACC 62.368 63.158 0.00 0.00 0.00 4.61
524 525 4.596585 CCACCACCACCACCACCC 62.597 72.222 0.00 0.00 0.00 4.61
525 526 3.814906 CACCACCACCACCACCCA 61.815 66.667 0.00 0.00 0.00 4.51
526 527 2.780924 ACCACCACCACCACCCAT 60.781 61.111 0.00 0.00 0.00 4.00
527 528 1.464395 ACCACCACCACCACCCATA 60.464 57.895 0.00 0.00 0.00 2.74
528 529 1.302949 CCACCACCACCACCCATAG 59.697 63.158 0.00 0.00 0.00 2.23
529 530 1.497309 CCACCACCACCACCCATAGT 61.497 60.000 0.00 0.00 0.00 2.12
530 531 0.035439 CACCACCACCACCCATAGTC 60.035 60.000 0.00 0.00 0.00 2.59
531 532 1.205460 ACCACCACCACCCATAGTCC 61.205 60.000 0.00 0.00 0.00 3.85
532 533 1.607612 CACCACCACCCATAGTCCC 59.392 63.158 0.00 0.00 0.00 4.46
533 534 1.618447 ACCACCACCCATAGTCCCC 60.618 63.158 0.00 0.00 0.00 4.81
534 535 2.383601 CCACCACCCATAGTCCCCC 61.384 68.421 0.00 0.00 0.00 5.40
535 536 2.366435 ACCACCCATAGTCCCCCG 60.366 66.667 0.00 0.00 0.00 5.73
536 537 3.873812 CCACCCATAGTCCCCCGC 61.874 72.222 0.00 0.00 0.00 6.13
537 538 2.768344 CACCCATAGTCCCCCGCT 60.768 66.667 0.00 0.00 0.00 5.52
538 539 2.768344 ACCCATAGTCCCCCGCTG 60.768 66.667 0.00 0.00 0.00 5.18
539 540 4.256180 CCCATAGTCCCCCGCTGC 62.256 72.222 0.00 0.00 0.00 5.25
540 541 3.164269 CCATAGTCCCCCGCTGCT 61.164 66.667 0.00 0.00 0.00 4.24
541 542 2.109799 CATAGTCCCCCGCTGCTG 59.890 66.667 0.00 0.00 0.00 4.41
542 543 2.041922 ATAGTCCCCCGCTGCTGA 60.042 61.111 0.00 0.00 0.00 4.26
543 544 1.689233 ATAGTCCCCCGCTGCTGAA 60.689 57.895 0.00 0.00 0.00 3.02
544 545 1.690219 ATAGTCCCCCGCTGCTGAAG 61.690 60.000 0.00 0.00 0.00 3.02
581 582 7.701257 AACTATGCCTAAGGGTAAAAGGATA 57.299 36.000 0.00 0.00 31.64 2.59
618 619 9.492730 AACCTAAAATATCTGATTTTGGATGGT 57.507 29.630 8.87 6.19 33.21 3.55
619 620 9.492730 ACCTAAAATATCTGATTTTGGATGGTT 57.507 29.630 8.87 0.00 33.21 3.67
635 651 5.886960 GATGGTTAACATATGAGCCATCC 57.113 43.478 24.66 14.75 43.76 3.51
656 672 2.554032 CCAAAGCCAGTCGAGTTCAATT 59.446 45.455 0.00 0.00 0.00 2.32
725 741 4.053295 GTCTCAAAGCATGCAAACAACAT 58.947 39.130 21.98 0.00 0.00 2.71
727 744 3.391965 TCAAAGCATGCAAACAACATCC 58.608 40.909 21.98 0.00 0.00 3.51
829 848 3.695830 TTGAGCTCCTTCGGTAAACAT 57.304 42.857 12.15 0.00 0.00 2.71
1000 1031 0.042731 ATCCCCTTCCTTCCTCGTCA 59.957 55.000 0.00 0.00 0.00 4.35
1859 1899 5.574055 CGACGGCTTAGTATTTTTGTACTGA 59.426 40.000 0.00 0.00 36.39 3.41
2017 2069 3.879295 AGTATCAATTTCCACATCAGGCG 59.121 43.478 0.00 0.00 0.00 5.52
2018 2070 2.488204 TCAATTTCCACATCAGGCGA 57.512 45.000 0.00 0.00 0.00 5.54
2019 2071 2.358957 TCAATTTCCACATCAGGCGAG 58.641 47.619 0.00 0.00 0.00 5.03
2020 2072 2.027285 TCAATTTCCACATCAGGCGAGA 60.027 45.455 0.00 0.00 0.00 4.04
2021 2073 2.322355 ATTTCCACATCAGGCGAGAG 57.678 50.000 0.00 0.00 0.00 3.20
2022 2074 0.250234 TTTCCACATCAGGCGAGAGG 59.750 55.000 0.00 0.00 0.00 3.69
2032 2084 4.919653 GCGAGAGGCACATTCAGA 57.080 55.556 0.00 0.00 42.87 3.27
2033 2085 3.376218 GCGAGAGGCACATTCAGAT 57.624 52.632 0.00 0.00 42.87 2.90
2034 2086 1.661341 GCGAGAGGCACATTCAGATT 58.339 50.000 0.00 0.00 42.87 2.40
2035 2087 1.596727 GCGAGAGGCACATTCAGATTC 59.403 52.381 0.00 0.00 42.87 2.52
2036 2088 2.897436 CGAGAGGCACATTCAGATTCA 58.103 47.619 0.00 0.00 0.00 2.57
2037 2089 2.864946 CGAGAGGCACATTCAGATTCAG 59.135 50.000 0.00 0.00 0.00 3.02
2038 2090 3.204526 GAGAGGCACATTCAGATTCAGG 58.795 50.000 0.00 0.00 0.00 3.86
2039 2091 2.842496 AGAGGCACATTCAGATTCAGGA 59.158 45.455 0.00 0.00 0.00 3.86
2140 2217 6.038609 TCAGGGGGATTATTCCAGCTTATAT 58.961 40.000 6.03 0.00 44.60 0.86
2200 2279 5.655090 TGATCGAAGGAAGTACCATAACTGA 59.345 40.000 0.00 0.00 42.04 3.41
2201 2280 5.578005 TCGAAGGAAGTACCATAACTGAG 57.422 43.478 0.00 0.00 42.04 3.35
2202 2281 4.401519 TCGAAGGAAGTACCATAACTGAGG 59.598 45.833 0.00 0.00 42.04 3.86
2203 2282 4.401519 CGAAGGAAGTACCATAACTGAGGA 59.598 45.833 0.00 0.00 42.04 3.71
2204 2283 5.105473 CGAAGGAAGTACCATAACTGAGGAA 60.105 44.000 0.00 0.00 42.04 3.36
2205 2284 5.678955 AGGAAGTACCATAACTGAGGAAC 57.321 43.478 0.00 0.00 42.04 3.62
2206 2285 5.342866 AGGAAGTACCATAACTGAGGAACT 58.657 41.667 0.00 0.00 41.89 3.01
2207 2286 6.500336 AGGAAGTACCATAACTGAGGAACTA 58.500 40.000 0.00 0.00 39.63 2.24
2208 2287 7.133483 AGGAAGTACCATAACTGAGGAACTAT 58.867 38.462 0.00 0.00 39.63 2.12
2209 2288 7.070074 AGGAAGTACCATAACTGAGGAACTATG 59.930 40.741 0.00 0.00 39.63 2.23
2210 2289 7.147707 GGAAGTACCATAACTGAGGAACTATGT 60.148 40.741 0.00 0.00 37.46 2.29
2211 2290 8.834004 AAGTACCATAACTGAGGAACTATGTA 57.166 34.615 0.00 0.00 41.55 2.29
2212 2291 8.834004 AGTACCATAACTGAGGAACTATGTAA 57.166 34.615 0.00 0.00 41.55 2.41
2213 2292 9.435570 AGTACCATAACTGAGGAACTATGTAAT 57.564 33.333 0.00 0.00 41.55 1.89
2214 2293 9.694137 GTACCATAACTGAGGAACTATGTAATC 57.306 37.037 0.00 0.00 41.55 1.75
2215 2294 8.319057 ACCATAACTGAGGAACTATGTAATCA 57.681 34.615 0.00 0.00 41.55 2.57
2216 2295 8.204836 ACCATAACTGAGGAACTATGTAATCAC 58.795 37.037 0.00 0.00 41.55 3.06
2217 2296 7.657761 CCATAACTGAGGAACTATGTAATCACC 59.342 40.741 0.00 0.00 41.55 4.02
2218 2297 6.620877 AACTGAGGAACTATGTAATCACCA 57.379 37.500 0.00 0.00 41.55 4.17
2219 2298 6.620877 ACTGAGGAACTATGTAATCACCAA 57.379 37.500 0.00 0.00 41.55 3.67
2220 2299 6.407202 ACTGAGGAACTATGTAATCACCAAC 58.593 40.000 0.00 0.00 41.55 3.77
2221 2300 6.013725 ACTGAGGAACTATGTAATCACCAACA 60.014 38.462 0.00 0.00 41.55 3.33
2222 2301 6.957631 TGAGGAACTATGTAATCACCAACAT 58.042 36.000 0.00 0.00 41.55 2.71
2223 2302 6.823182 TGAGGAACTATGTAATCACCAACATG 59.177 38.462 0.00 0.00 41.55 3.21
2224 2303 6.957631 AGGAACTATGTAATCACCAACATGA 58.042 36.000 0.00 0.00 36.96 3.07
2225 2304 7.402054 AGGAACTATGTAATCACCAACATGAA 58.598 34.615 0.00 0.00 36.96 2.57
2226 2305 7.554118 AGGAACTATGTAATCACCAACATGAAG 59.446 37.037 0.00 0.00 36.96 3.02
2227 2306 7.201732 GGAACTATGTAATCACCAACATGAAGG 60.202 40.741 0.00 2.82 36.96 3.46
2228 2307 6.122277 ACTATGTAATCACCAACATGAAGGG 58.878 40.000 0.00 0.00 36.96 3.95
2229 2308 3.696045 TGTAATCACCAACATGAAGGGG 58.304 45.455 0.00 1.26 30.82 4.79
2230 2309 1.560505 AATCACCAACATGAAGGGGC 58.439 50.000 0.00 0.00 30.82 5.80
2231 2310 0.706433 ATCACCAACATGAAGGGGCT 59.294 50.000 0.00 0.00 30.82 5.19
2232 2311 0.038166 TCACCAACATGAAGGGGCTC 59.962 55.000 0.00 0.00 0.00 4.70
2233 2312 0.038744 CACCAACATGAAGGGGCTCT 59.961 55.000 0.00 0.00 0.00 4.09
2234 2313 0.779997 ACCAACATGAAGGGGCTCTT 59.220 50.000 0.00 0.00 38.65 2.85
2235 2314 1.147817 ACCAACATGAAGGGGCTCTTT 59.852 47.619 0.00 0.00 35.50 2.52
2236 2315 2.250924 CCAACATGAAGGGGCTCTTTT 58.749 47.619 0.00 0.00 35.50 2.27
2237 2316 2.232208 CCAACATGAAGGGGCTCTTTTC 59.768 50.000 0.00 0.00 35.50 2.29
2238 2317 2.222227 ACATGAAGGGGCTCTTTTCC 57.778 50.000 0.00 0.00 35.50 3.13
2239 2318 1.272704 ACATGAAGGGGCTCTTTTCCC 60.273 52.381 0.00 0.00 43.46 3.97
2245 2324 2.977578 GGGCTCTTTTCCCCCTTTC 58.022 57.895 0.00 0.00 37.81 2.62
2246 2325 0.409876 GGGCTCTTTTCCCCCTTTCT 59.590 55.000 0.00 0.00 37.81 2.52
2247 2326 1.203187 GGGCTCTTTTCCCCCTTTCTT 60.203 52.381 0.00 0.00 37.81 2.52
2248 2327 2.171840 GGCTCTTTTCCCCCTTTCTTC 58.828 52.381 0.00 0.00 0.00 2.87
2249 2328 2.225142 GGCTCTTTTCCCCCTTTCTTCT 60.225 50.000 0.00 0.00 0.00 2.85
2250 2329 3.501349 GCTCTTTTCCCCCTTTCTTCTT 58.499 45.455 0.00 0.00 0.00 2.52
2251 2330 3.256879 GCTCTTTTCCCCCTTTCTTCTTG 59.743 47.826 0.00 0.00 0.00 3.02
2252 2331 4.729868 CTCTTTTCCCCCTTTCTTCTTGA 58.270 43.478 0.00 0.00 0.00 3.02
2253 2332 5.137412 TCTTTTCCCCCTTTCTTCTTGAA 57.863 39.130 0.00 0.00 0.00 2.69
2254 2333 5.715921 TCTTTTCCCCCTTTCTTCTTGAAT 58.284 37.500 0.00 0.00 34.24 2.57
2255 2334 6.858941 TCTTTTCCCCCTTTCTTCTTGAATA 58.141 36.000 0.00 0.00 34.24 1.75
2256 2335 7.478721 TCTTTTCCCCCTTTCTTCTTGAATAT 58.521 34.615 0.00 0.00 34.24 1.28
2257 2336 8.620177 TCTTTTCCCCCTTTCTTCTTGAATATA 58.380 33.333 0.00 0.00 34.24 0.86
2258 2337 9.426534 CTTTTCCCCCTTTCTTCTTGAATATAT 57.573 33.333 0.00 0.00 34.24 0.86
2261 2340 8.814448 TCCCCCTTTCTTCTTGAATATATAGT 57.186 34.615 0.00 0.00 34.24 2.12
2262 2341 9.907819 TCCCCCTTTCTTCTTGAATATATAGTA 57.092 33.333 0.00 0.00 34.24 1.82
2263 2342 9.945904 CCCCCTTTCTTCTTGAATATATAGTAC 57.054 37.037 0.00 0.00 34.24 2.73
2264 2343 9.640963 CCCCTTTCTTCTTGAATATATAGTACG 57.359 37.037 0.00 0.00 34.24 3.67
2265 2344 9.141400 CCCTTTCTTCTTGAATATATAGTACGC 57.859 37.037 0.00 0.00 34.24 4.42
2266 2345 9.692749 CCTTTCTTCTTGAATATATAGTACGCA 57.307 33.333 0.00 0.00 34.24 5.24
2268 2347 8.723777 TTCTTCTTGAATATATAGTACGCACG 57.276 34.615 0.00 0.00 0.00 5.34
2269 2348 7.868775 TCTTCTTGAATATATAGTACGCACGT 58.131 34.615 0.00 0.00 0.00 4.49
2270 2349 8.347771 TCTTCTTGAATATATAGTACGCACGTT 58.652 33.333 0.00 0.00 0.00 3.99
2271 2350 8.498192 TTCTTGAATATATAGTACGCACGTTC 57.502 34.615 0.00 0.00 0.00 3.95
2272 2351 6.793680 TCTTGAATATATAGTACGCACGTTCG 59.206 38.462 5.94 5.94 0.00 3.95
2273 2352 5.989249 TGAATATATAGTACGCACGTTCGT 58.011 37.500 18.63 18.63 45.49 3.85
2274 2353 5.847515 TGAATATATAGTACGCACGTTCGTG 59.152 40.000 23.20 19.03 43.21 4.35
2282 2361 4.896881 CACGTTCGTGCGTATTCG 57.103 55.556 12.19 0.00 43.83 3.34
2283 2362 2.341977 CACGTTCGTGCGTATTCGA 58.658 52.632 12.19 0.00 43.83 3.71
2284 2363 0.290840 CACGTTCGTGCGTATTCGAG 59.709 55.000 12.19 0.00 43.83 4.04
2285 2364 0.166597 ACGTTCGTGCGTATTCGAGA 59.833 50.000 5.36 0.00 43.83 4.04
2286 2365 1.253116 CGTTCGTGCGTATTCGAGAA 58.747 50.000 0.00 0.00 39.71 2.87
2287 2366 1.249491 CGTTCGTGCGTATTCGAGAAG 59.751 52.381 0.00 0.00 39.71 2.85
2288 2367 2.512885 GTTCGTGCGTATTCGAGAAGA 58.487 47.619 0.00 0.00 39.71 2.87
2289 2368 2.905959 TCGTGCGTATTCGAGAAGAA 57.094 45.000 0.00 0.00 43.93 2.52
2290 2369 2.782163 TCGTGCGTATTCGAGAAGAAG 58.218 47.619 0.00 0.00 42.92 2.85
2291 2370 2.161012 TCGTGCGTATTCGAGAAGAAGT 59.839 45.455 0.00 0.00 42.92 3.01
2292 2371 3.371898 TCGTGCGTATTCGAGAAGAAGTA 59.628 43.478 0.00 0.00 42.92 2.24
2293 2372 3.477802 CGTGCGTATTCGAGAAGAAGTAC 59.522 47.826 0.00 5.06 42.92 2.73
2294 2373 3.790288 GTGCGTATTCGAGAAGAAGTACC 59.210 47.826 0.00 0.00 42.92 3.34
2295 2374 3.441222 TGCGTATTCGAGAAGAAGTACCA 59.559 43.478 0.00 0.00 42.92 3.25
2296 2375 4.097437 TGCGTATTCGAGAAGAAGTACCAT 59.903 41.667 0.00 0.00 42.92 3.55
2297 2376 5.297527 TGCGTATTCGAGAAGAAGTACCATA 59.702 40.000 0.00 0.00 42.92 2.74
2298 2377 6.183360 TGCGTATTCGAGAAGAAGTACCATAA 60.183 38.462 0.00 0.00 42.92 1.90
2299 2378 6.142002 GCGTATTCGAGAAGAAGTACCATAAC 59.858 42.308 0.00 0.00 42.92 1.89
2300 2379 7.416022 CGTATTCGAGAAGAAGTACCATAACT 58.584 38.462 0.00 0.00 42.92 2.24
2301 2380 7.376336 CGTATTCGAGAAGAAGTACCATAACTG 59.624 40.741 0.00 0.00 42.92 3.16
2307 2386 5.485708 AGAAGAAGTACCATAACTGAGGCTT 59.514 40.000 0.00 0.00 0.00 4.35
2317 2396 5.066505 CCATAACTGAGGCTTGAATTGGTAC 59.933 44.000 0.00 0.00 0.00 3.34
2322 2401 3.585289 TGAGGCTTGAATTGGTACCACTA 59.415 43.478 16.04 0.15 0.00 2.74
2323 2402 4.227300 TGAGGCTTGAATTGGTACCACTAT 59.773 41.667 16.04 3.20 0.00 2.12
2362 2441 4.162690 CCTAGTCTGGGGCACGCC 62.163 72.222 0.00 0.00 42.25 5.68
2372 2451 2.804931 GGCACGCCGCAACAAATC 60.805 61.111 0.00 0.00 45.17 2.17
2383 2462 4.274069 CCGCAACAAATCAATCTGATACG 58.726 43.478 0.00 0.00 35.76 3.06
2417 2496 2.684001 TTGACACGGAAACTGACAGT 57.316 45.000 1.07 1.07 0.00 3.55
2499 2578 7.597288 ACCCCCTTGCTTTATATTTAATCAC 57.403 36.000 0.00 0.00 0.00 3.06
2568 2647 1.304630 TGGCTAGGCACCAGTCGTA 60.305 57.895 16.16 0.00 32.06 3.43
2659 2738 0.166814 CAAGGCGCAGTTAAGAGTGC 59.833 55.000 10.83 4.48 46.54 4.40
2723 2802 2.224793 CCCTTTCCCCTCTCTCGTTTTT 60.225 50.000 0.00 0.00 0.00 1.94
2766 2845 2.456119 CGTCATGAACCAGCGAGCC 61.456 63.158 0.00 0.00 0.00 4.70
2786 2865 0.326143 AAAACCACCACCTGGCCTTT 60.326 50.000 3.32 0.00 45.32 3.11
2845 2924 1.867233 CTCTCCACCGACAAAACACAG 59.133 52.381 0.00 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.596600 TTCGTCCGTGCAGTCAAGTC 60.597 55.000 0.00 0.00 0.00 3.01
1 2 0.033504 ATTCGTCCGTGCAGTCAAGT 59.966 50.000 0.00 0.00 0.00 3.16
2 3 1.148310 AATTCGTCCGTGCAGTCAAG 58.852 50.000 0.00 0.00 0.00 3.02
3 4 2.442212 TAATTCGTCCGTGCAGTCAA 57.558 45.000 0.00 0.00 0.00 3.18
4 5 2.442212 TTAATTCGTCCGTGCAGTCA 57.558 45.000 0.00 0.00 0.00 3.41
5 6 4.336532 AATTTAATTCGTCCGTGCAGTC 57.663 40.909 0.00 0.00 0.00 3.51
6 7 4.691685 TGTAATTTAATTCGTCCGTGCAGT 59.308 37.500 0.00 0.00 0.00 4.40
7 8 5.211266 TGTAATTTAATTCGTCCGTGCAG 57.789 39.130 0.00 0.00 0.00 4.41
8 9 5.608676 TTGTAATTTAATTCGTCCGTGCA 57.391 34.783 0.00 0.00 0.00 4.57
9 10 7.693120 TGTATTTGTAATTTAATTCGTCCGTGC 59.307 33.333 0.00 0.00 0.00 5.34
10 11 8.991810 GTGTATTTGTAATTTAATTCGTCCGTG 58.008 33.333 0.00 0.00 0.00 4.94
11 12 7.899330 CGTGTATTTGTAATTTAATTCGTCCGT 59.101 33.333 0.00 0.00 0.00 4.69
12 13 8.109391 TCGTGTATTTGTAATTTAATTCGTCCG 58.891 33.333 0.00 0.00 0.00 4.79
13 14 9.925268 ATCGTGTATTTGTAATTTAATTCGTCC 57.075 29.630 0.00 0.00 0.00 4.79
15 16 9.925268 GGATCGTGTATTTGTAATTTAATTCGT 57.075 29.630 0.00 0.00 0.00 3.85
16 17 9.923786 TGGATCGTGTATTTGTAATTTAATTCG 57.076 29.630 0.00 0.00 0.00 3.34
20 21 9.011095 TGGTTGGATCGTGTATTTGTAATTTAA 57.989 29.630 0.00 0.00 0.00 1.52
21 22 8.563123 TGGTTGGATCGTGTATTTGTAATTTA 57.437 30.769 0.00 0.00 0.00 1.40
22 23 7.455641 TGGTTGGATCGTGTATTTGTAATTT 57.544 32.000 0.00 0.00 0.00 1.82
23 24 6.404293 GCTGGTTGGATCGTGTATTTGTAATT 60.404 38.462 0.00 0.00 0.00 1.40
24 25 5.065988 GCTGGTTGGATCGTGTATTTGTAAT 59.934 40.000 0.00 0.00 0.00 1.89
25 26 4.393680 GCTGGTTGGATCGTGTATTTGTAA 59.606 41.667 0.00 0.00 0.00 2.41
26 27 3.936453 GCTGGTTGGATCGTGTATTTGTA 59.064 43.478 0.00 0.00 0.00 2.41
27 28 2.747446 GCTGGTTGGATCGTGTATTTGT 59.253 45.455 0.00 0.00 0.00 2.83
28 29 2.097466 GGCTGGTTGGATCGTGTATTTG 59.903 50.000 0.00 0.00 0.00 2.32
29 30 2.290641 TGGCTGGTTGGATCGTGTATTT 60.291 45.455 0.00 0.00 0.00 1.40
30 31 1.280710 TGGCTGGTTGGATCGTGTATT 59.719 47.619 0.00 0.00 0.00 1.89
31 32 0.908910 TGGCTGGTTGGATCGTGTAT 59.091 50.000 0.00 0.00 0.00 2.29
32 33 0.687920 TTGGCTGGTTGGATCGTGTA 59.312 50.000 0.00 0.00 0.00 2.90
33 34 0.889186 GTTGGCTGGTTGGATCGTGT 60.889 55.000 0.00 0.00 0.00 4.49
34 35 0.606401 AGTTGGCTGGTTGGATCGTG 60.606 55.000 0.00 0.00 0.00 4.35
35 36 0.606401 CAGTTGGCTGGTTGGATCGT 60.606 55.000 0.00 0.00 39.01 3.73
36 37 2.174334 CAGTTGGCTGGTTGGATCG 58.826 57.895 0.00 0.00 39.01 3.69
48 49 1.577328 AACTCGCAATCGCCAGTTGG 61.577 55.000 0.00 0.00 33.37 3.77
49 50 0.238289 AAACTCGCAATCGCCAGTTG 59.762 50.000 0.00 0.00 34.40 3.16
50 51 0.517316 GAAACTCGCAATCGCCAGTT 59.483 50.000 0.00 0.00 35.24 3.16
51 52 0.602638 TGAAACTCGCAATCGCCAGT 60.603 50.000 0.00 0.00 35.26 4.00
52 53 0.516877 TTGAAACTCGCAATCGCCAG 59.483 50.000 0.00 0.00 35.26 4.85
53 54 0.947960 TTTGAAACTCGCAATCGCCA 59.052 45.000 0.00 0.00 35.26 5.69
54 55 2.044888 TTTTGAAACTCGCAATCGCC 57.955 45.000 0.00 0.00 35.26 5.54
55 56 3.059438 GGATTTTTGAAACTCGCAATCGC 59.941 43.478 0.00 0.00 35.26 4.58
56 57 4.475944 AGGATTTTTGAAACTCGCAATCG 58.524 39.130 0.00 0.00 0.00 3.34
57 58 6.842163 TCTAGGATTTTTGAAACTCGCAATC 58.158 36.000 0.00 0.00 0.00 2.67
58 59 6.817765 TCTAGGATTTTTGAAACTCGCAAT 57.182 33.333 0.00 0.00 0.00 3.56
59 60 6.627395 TTCTAGGATTTTTGAAACTCGCAA 57.373 33.333 0.00 0.00 0.00 4.85
60 61 6.262273 ACTTTCTAGGATTTTTGAAACTCGCA 59.738 34.615 0.00 0.00 0.00 5.10
61 62 6.669278 ACTTTCTAGGATTTTTGAAACTCGC 58.331 36.000 0.00 0.00 0.00 5.03
62 63 7.010023 CGACTTTCTAGGATTTTTGAAACTCG 58.990 38.462 0.00 0.00 32.87 4.18
63 64 8.084590 TCGACTTTCTAGGATTTTTGAAACTC 57.915 34.615 0.00 0.00 0.00 3.01
64 65 8.446599 TTCGACTTTCTAGGATTTTTGAAACT 57.553 30.769 0.00 0.00 0.00 2.66
65 66 8.955002 GTTTCGACTTTCTAGGATTTTTGAAAC 58.045 33.333 0.00 0.00 35.26 2.78
66 67 8.132995 GGTTTCGACTTTCTAGGATTTTTGAAA 58.867 33.333 0.00 0.00 0.00 2.69
67 68 7.255346 GGGTTTCGACTTTCTAGGATTTTTGAA 60.255 37.037 0.00 0.00 0.00 2.69
68 69 6.206048 GGGTTTCGACTTTCTAGGATTTTTGA 59.794 38.462 0.00 0.00 0.00 2.69
69 70 6.206829 AGGGTTTCGACTTTCTAGGATTTTTG 59.793 38.462 0.00 0.00 0.00 2.44
70 71 6.304624 AGGGTTTCGACTTTCTAGGATTTTT 58.695 36.000 0.00 0.00 0.00 1.94
71 72 5.877491 AGGGTTTCGACTTTCTAGGATTTT 58.123 37.500 0.00 0.00 0.00 1.82
72 73 5.012768 TGAGGGTTTCGACTTTCTAGGATTT 59.987 40.000 0.00 0.00 0.00 2.17
73 74 4.530946 TGAGGGTTTCGACTTTCTAGGATT 59.469 41.667 0.00 0.00 0.00 3.01
74 75 4.094476 TGAGGGTTTCGACTTTCTAGGAT 58.906 43.478 0.00 0.00 0.00 3.24
75 76 3.503365 TGAGGGTTTCGACTTTCTAGGA 58.497 45.455 0.00 0.00 0.00 2.94
76 77 3.955650 TGAGGGTTTCGACTTTCTAGG 57.044 47.619 0.00 0.00 0.00 3.02
77 78 5.073311 TCATGAGGGTTTCGACTTTCTAG 57.927 43.478 0.00 0.00 0.00 2.43
78 79 5.477607 TTCATGAGGGTTTCGACTTTCTA 57.522 39.130 0.00 0.00 0.00 2.10
79 80 4.351874 TTCATGAGGGTTTCGACTTTCT 57.648 40.909 0.00 0.00 0.00 2.52
80 81 4.095036 GGATTCATGAGGGTTTCGACTTTC 59.905 45.833 0.00 0.00 0.00 2.62
81 82 4.010349 GGATTCATGAGGGTTTCGACTTT 58.990 43.478 0.00 0.00 0.00 2.66
82 83 3.009033 TGGATTCATGAGGGTTTCGACTT 59.991 43.478 0.00 0.00 0.00 3.01
83 84 2.571653 TGGATTCATGAGGGTTTCGACT 59.428 45.455 0.00 0.00 0.00 4.18
84 85 2.985896 TGGATTCATGAGGGTTTCGAC 58.014 47.619 0.00 0.00 0.00 4.20
85 86 3.931907 ATGGATTCATGAGGGTTTCGA 57.068 42.857 0.00 0.00 31.34 3.71
86 87 6.488006 AGAATTATGGATTCATGAGGGTTTCG 59.512 38.462 0.00 0.00 45.42 3.46
87 88 7.655490 CAGAATTATGGATTCATGAGGGTTTC 58.345 38.462 0.00 0.00 45.42 2.78
88 89 6.041296 GCAGAATTATGGATTCATGAGGGTTT 59.959 38.462 1.67 0.00 45.42 3.27
89 90 5.537674 GCAGAATTATGGATTCATGAGGGTT 59.462 40.000 1.67 0.00 45.42 4.11
90 91 5.075493 GCAGAATTATGGATTCATGAGGGT 58.925 41.667 1.67 0.00 45.42 4.34
91 92 5.074804 TGCAGAATTATGGATTCATGAGGG 58.925 41.667 1.67 0.00 45.42 4.30
92 93 6.208797 ACATGCAGAATTATGGATTCATGAGG 59.791 38.462 18.95 5.29 45.42 3.86
93 94 7.215719 ACATGCAGAATTATGGATTCATGAG 57.784 36.000 18.95 5.85 45.42 2.90
94 95 8.694581 TTACATGCAGAATTATGGATTCATGA 57.305 30.769 18.95 0.00 45.42 3.07
95 96 8.573885 ACTTACATGCAGAATTATGGATTCATG 58.426 33.333 4.13 9.92 45.42 3.07
96 97 8.573885 CACTTACATGCAGAATTATGGATTCAT 58.426 33.333 4.13 0.00 45.42 2.57
97 98 7.774625 TCACTTACATGCAGAATTATGGATTCA 59.225 33.333 4.13 0.00 45.42 2.57
98 99 8.072567 GTCACTTACATGCAGAATTATGGATTC 58.927 37.037 4.13 0.00 43.71 2.52
99 100 7.557358 TGTCACTTACATGCAGAATTATGGATT 59.443 33.333 4.13 0.34 31.43 3.01
100 101 7.056006 TGTCACTTACATGCAGAATTATGGAT 58.944 34.615 0.70 0.70 31.43 3.41
101 102 6.413892 TGTCACTTACATGCAGAATTATGGA 58.586 36.000 1.67 0.00 31.43 3.41
102 103 6.682423 TGTCACTTACATGCAGAATTATGG 57.318 37.500 1.67 0.00 31.43 2.74
103 104 7.529158 TGTTGTCACTTACATGCAGAATTATG 58.471 34.615 0.00 0.00 38.10 1.90
104 105 7.391554 ACTGTTGTCACTTACATGCAGAATTAT 59.608 33.333 13.48 0.00 40.79 1.28
105 106 6.710295 ACTGTTGTCACTTACATGCAGAATTA 59.290 34.615 13.48 0.00 40.79 1.40
106 107 5.532406 ACTGTTGTCACTTACATGCAGAATT 59.468 36.000 13.48 0.00 40.79 2.17
107 108 5.065914 ACTGTTGTCACTTACATGCAGAAT 58.934 37.500 13.48 0.00 40.79 2.40
108 109 4.450976 ACTGTTGTCACTTACATGCAGAA 58.549 39.130 13.48 0.00 40.79 3.02
109 110 4.058124 GACTGTTGTCACTTACATGCAGA 58.942 43.478 13.48 0.00 40.79 4.26
110 111 4.395581 GACTGTTGTCACTTACATGCAG 57.604 45.455 0.00 0.00 42.45 4.41
122 123 1.341606 GCTACTCGCTGACTGTTGTC 58.658 55.000 0.00 0.00 43.20 3.18
123 124 3.498676 GCTACTCGCTGACTGTTGT 57.501 52.632 0.00 0.00 35.14 3.32
133 134 1.583194 GACGACGGAAGCTACTCGC 60.583 63.158 0.00 0.00 39.57 5.03
134 135 1.062206 GGACGACGGAAGCTACTCG 59.938 63.158 0.00 0.00 0.00 4.18
135 136 1.062206 CGGACGACGGAAGCTACTC 59.938 63.158 0.00 0.00 39.42 2.59
136 137 3.185155 CGGACGACGGAAGCTACT 58.815 61.111 0.00 0.00 39.42 2.57
152 153 1.100510 TTATCTCACCCGACTCACCG 58.899 55.000 0.00 0.00 0.00 4.94
153 154 2.693591 TCATTATCTCACCCGACTCACC 59.306 50.000 0.00 0.00 0.00 4.02
154 155 3.243569 CCTCATTATCTCACCCGACTCAC 60.244 52.174 0.00 0.00 0.00 3.51
155 156 2.959030 CCTCATTATCTCACCCGACTCA 59.041 50.000 0.00 0.00 0.00 3.41
156 157 3.004944 GTCCTCATTATCTCACCCGACTC 59.995 52.174 0.00 0.00 0.00 3.36
157 158 2.959707 GTCCTCATTATCTCACCCGACT 59.040 50.000 0.00 0.00 0.00 4.18
158 159 2.287668 CGTCCTCATTATCTCACCCGAC 60.288 54.545 0.00 0.00 0.00 4.79
159 160 1.954382 CGTCCTCATTATCTCACCCGA 59.046 52.381 0.00 0.00 0.00 5.14
160 161 1.603172 GCGTCCTCATTATCTCACCCG 60.603 57.143 0.00 0.00 0.00 5.28
161 162 1.603172 CGCGTCCTCATTATCTCACCC 60.603 57.143 0.00 0.00 0.00 4.61
162 163 1.337071 TCGCGTCCTCATTATCTCACC 59.663 52.381 5.77 0.00 0.00 4.02
163 164 2.776312 TCGCGTCCTCATTATCTCAC 57.224 50.000 5.77 0.00 0.00 3.51
164 165 3.444916 GTTTCGCGTCCTCATTATCTCA 58.555 45.455 5.77 0.00 0.00 3.27
165 166 2.468040 CGTTTCGCGTCCTCATTATCTC 59.532 50.000 5.77 0.00 35.54 2.75
166 167 2.098607 TCGTTTCGCGTCCTCATTATCT 59.901 45.455 5.77 0.00 42.13 1.98
167 168 2.456989 TCGTTTCGCGTCCTCATTATC 58.543 47.619 5.77 0.00 42.13 1.75
168 169 2.572191 TCGTTTCGCGTCCTCATTAT 57.428 45.000 5.77 0.00 42.13 1.28
169 170 2.350899 TTCGTTTCGCGTCCTCATTA 57.649 45.000 5.77 0.00 42.13 1.90
170 171 1.393539 CATTCGTTTCGCGTCCTCATT 59.606 47.619 5.77 0.00 42.13 2.57
171 172 0.999406 CATTCGTTTCGCGTCCTCAT 59.001 50.000 5.77 0.00 42.13 2.90
172 173 0.038983 TCATTCGTTTCGCGTCCTCA 60.039 50.000 5.77 0.00 42.13 3.86
173 174 0.640768 CTCATTCGTTTCGCGTCCTC 59.359 55.000 5.77 0.00 42.13 3.71
174 175 0.242825 TCTCATTCGTTTCGCGTCCT 59.757 50.000 5.77 0.00 42.13 3.85
175 176 1.005975 CATCTCATTCGTTTCGCGTCC 60.006 52.381 5.77 0.00 42.13 4.79
176 177 1.654105 ACATCTCATTCGTTTCGCGTC 59.346 47.619 5.77 0.00 42.13 5.19
177 178 1.390123 CACATCTCATTCGTTTCGCGT 59.610 47.619 5.77 0.00 42.13 6.01
178 179 1.848186 GCACATCTCATTCGTTTCGCG 60.848 52.381 0.00 0.00 43.01 5.87
179 180 1.802839 GCACATCTCATTCGTTTCGC 58.197 50.000 0.00 0.00 0.00 4.70
180 181 1.848186 GCGCACATCTCATTCGTTTCG 60.848 52.381 0.30 0.00 0.00 3.46
181 182 1.802839 GCGCACATCTCATTCGTTTC 58.197 50.000 0.30 0.00 0.00 2.78
182 183 0.095245 CGCGCACATCTCATTCGTTT 59.905 50.000 8.75 0.00 0.00 3.60
183 184 1.695893 CCGCGCACATCTCATTCGTT 61.696 55.000 8.75 0.00 0.00 3.85
184 185 2.167219 CCGCGCACATCTCATTCGT 61.167 57.895 8.75 0.00 0.00 3.85
185 186 1.420641 TTCCGCGCACATCTCATTCG 61.421 55.000 8.75 0.00 0.00 3.34
186 187 0.302890 CTTCCGCGCACATCTCATTC 59.697 55.000 8.75 0.00 0.00 2.67
187 188 1.091771 CCTTCCGCGCACATCTCATT 61.092 55.000 8.75 0.00 0.00 2.57
188 189 1.522355 CCTTCCGCGCACATCTCAT 60.522 57.895 8.75 0.00 0.00 2.90
189 190 2.125552 CCTTCCGCGCACATCTCA 60.126 61.111 8.75 0.00 0.00 3.27
190 191 3.567797 GCCTTCCGCGCACATCTC 61.568 66.667 8.75 0.00 0.00 2.75
200 201 0.591170 TTTTTCTTCTGCGCCTTCCG 59.409 50.000 4.18 0.00 40.75 4.30
258 259 9.824534 CAACAAAATTTGCTTCAAACTAAAGTT 57.175 25.926 5.52 0.00 36.13 2.66
259 260 9.213799 TCAACAAAATTTGCTTCAAACTAAAGT 57.786 25.926 5.52 0.00 36.13 2.66
260 261 9.476761 GTCAACAAAATTTGCTTCAAACTAAAG 57.523 29.630 5.52 0.00 36.13 1.85
261 262 8.165428 CGTCAACAAAATTTGCTTCAAACTAAA 58.835 29.630 5.52 0.00 36.13 1.85
262 263 7.329717 ACGTCAACAAAATTTGCTTCAAACTAA 59.670 29.630 5.52 0.00 36.13 2.24
263 264 6.809196 ACGTCAACAAAATTTGCTTCAAACTA 59.191 30.769 5.52 0.00 36.13 2.24
264 265 5.637387 ACGTCAACAAAATTTGCTTCAAACT 59.363 32.000 5.52 0.00 36.13 2.66
265 266 5.853081 ACGTCAACAAAATTTGCTTCAAAC 58.147 33.333 5.52 0.00 36.13 2.93
266 267 5.635280 TGACGTCAACAAAATTTGCTTCAAA 59.365 32.000 17.62 0.00 37.75 2.69
267 268 5.164233 TGACGTCAACAAAATTTGCTTCAA 58.836 33.333 17.62 0.00 0.00 2.69
268 269 4.738124 TGACGTCAACAAAATTTGCTTCA 58.262 34.783 17.62 0.00 0.00 3.02
269 270 5.694674 TTGACGTCAACAAAATTTGCTTC 57.305 34.783 26.53 0.00 0.00 3.86
270 271 6.660887 ATTTGACGTCAACAAAATTTGCTT 57.339 29.167 29.74 0.00 39.95 3.91
271 272 7.763172 TTATTTGACGTCAACAAAATTTGCT 57.237 28.000 29.74 3.51 39.95 3.91
272 273 8.813263 TTTTATTTGACGTCAACAAAATTTGC 57.187 26.923 28.87 1.60 39.95 3.68
279 280 9.834628 GGATCTTATTTTATTTGACGTCAACAA 57.165 29.630 29.74 22.25 35.28 2.83
280 281 9.004717 TGGATCTTATTTTATTTGACGTCAACA 57.995 29.630 29.74 20.22 35.28 3.33
281 282 9.274065 GTGGATCTTATTTTATTTGACGTCAAC 57.726 33.333 29.74 13.40 35.28 3.18
282 283 9.004717 TGTGGATCTTATTTTATTTGACGTCAA 57.995 29.630 26.53 26.53 0.00 3.18
283 284 8.554835 TGTGGATCTTATTTTATTTGACGTCA 57.445 30.769 15.76 15.76 0.00 4.35
295 296 9.838339 AGATCGTTAGAATTGTGGATCTTATTT 57.162 29.630 8.75 0.00 37.86 1.40
296 297 9.265901 CAGATCGTTAGAATTGTGGATCTTATT 57.734 33.333 10.78 0.00 38.74 1.40
297 298 8.424918 ACAGATCGTTAGAATTGTGGATCTTAT 58.575 33.333 10.78 3.60 38.74 1.73
298 299 7.782049 ACAGATCGTTAGAATTGTGGATCTTA 58.218 34.615 10.78 0.00 38.74 2.10
299 300 6.644347 ACAGATCGTTAGAATTGTGGATCTT 58.356 36.000 10.78 4.09 38.74 2.40
300 301 6.227298 ACAGATCGTTAGAATTGTGGATCT 57.773 37.500 8.75 8.75 40.75 2.75
301 302 6.535150 TCAACAGATCGTTAGAATTGTGGATC 59.465 38.462 3.25 5.51 35.52 3.36
302 303 6.406370 TCAACAGATCGTTAGAATTGTGGAT 58.594 36.000 3.25 0.00 35.52 3.41
303 304 5.789521 TCAACAGATCGTTAGAATTGTGGA 58.210 37.500 3.25 0.00 35.52 4.02
304 305 6.668541 ATCAACAGATCGTTAGAATTGTGG 57.331 37.500 3.25 0.00 35.52 4.17
305 306 8.323854 CAGTATCAACAGATCGTTAGAATTGTG 58.676 37.037 3.25 0.00 35.52 3.33
306 307 8.251026 TCAGTATCAACAGATCGTTAGAATTGT 58.749 33.333 3.25 0.00 35.52 2.71
307 308 8.634475 TCAGTATCAACAGATCGTTAGAATTG 57.366 34.615 3.25 0.00 35.52 2.32
308 309 9.653287 TTTCAGTATCAACAGATCGTTAGAATT 57.347 29.630 3.25 0.00 35.52 2.17
309 310 9.088512 GTTTCAGTATCAACAGATCGTTAGAAT 57.911 33.333 3.25 2.05 35.52 2.40
310 311 8.304596 AGTTTCAGTATCAACAGATCGTTAGAA 58.695 33.333 3.25 0.00 35.52 2.10
311 312 7.827701 AGTTTCAGTATCAACAGATCGTTAGA 58.172 34.615 3.25 4.68 35.52 2.10
312 313 9.569167 TTAGTTTCAGTATCAACAGATCGTTAG 57.431 33.333 3.25 0.47 35.52 2.34
314 315 9.088512 GATTAGTTTCAGTATCAACAGATCGTT 57.911 33.333 0.00 0.00 38.83 3.85
315 316 8.470805 AGATTAGTTTCAGTATCAACAGATCGT 58.529 33.333 0.00 0.00 0.00 3.73
316 317 8.864069 AGATTAGTTTCAGTATCAACAGATCG 57.136 34.615 0.00 0.00 0.00 3.69
338 339 9.869757 GGCAAATACAACCTAAAACAAATAGAT 57.130 29.630 0.00 0.00 0.00 1.98
339 340 8.024285 CGGCAAATACAACCTAAAACAAATAGA 58.976 33.333 0.00 0.00 0.00 1.98
340 341 8.024285 TCGGCAAATACAACCTAAAACAAATAG 58.976 33.333 0.00 0.00 0.00 1.73
341 342 7.883217 TCGGCAAATACAACCTAAAACAAATA 58.117 30.769 0.00 0.00 0.00 1.40
342 343 6.750148 TCGGCAAATACAACCTAAAACAAAT 58.250 32.000 0.00 0.00 0.00 2.32
343 344 6.145338 TCGGCAAATACAACCTAAAACAAA 57.855 33.333 0.00 0.00 0.00 2.83
344 345 5.769484 TCGGCAAATACAACCTAAAACAA 57.231 34.783 0.00 0.00 0.00 2.83
345 346 5.067413 TGTTCGGCAAATACAACCTAAAACA 59.933 36.000 0.00 0.00 0.00 2.83
346 347 5.400188 GTGTTCGGCAAATACAACCTAAAAC 59.600 40.000 0.00 0.00 0.00 2.43
347 348 5.067413 TGTGTTCGGCAAATACAACCTAAAA 59.933 36.000 0.00 0.00 36.21 1.52
348 349 4.579340 TGTGTTCGGCAAATACAACCTAAA 59.421 37.500 0.00 0.00 36.21 1.85
349 350 4.135306 TGTGTTCGGCAAATACAACCTAA 58.865 39.130 0.00 0.00 36.21 2.69
350 351 3.741249 TGTGTTCGGCAAATACAACCTA 58.259 40.909 0.00 0.00 36.21 3.08
351 352 2.577700 TGTGTTCGGCAAATACAACCT 58.422 42.857 0.00 0.00 36.21 3.50
352 353 3.357166 TTGTGTTCGGCAAATACAACC 57.643 42.857 8.61 0.00 42.08 3.77
353 354 5.898630 ATTTTGTGTTCGGCAAATACAAC 57.101 34.783 11.25 0.00 45.24 3.32
354 355 9.347934 CTATTATTTTGTGTTCGGCAAATACAA 57.652 29.630 8.61 8.61 44.30 2.41
355 356 8.516234 ACTATTATTTTGTGTTCGGCAAATACA 58.484 29.630 0.00 0.00 37.22 2.29
356 357 8.905103 ACTATTATTTTGTGTTCGGCAAATAC 57.095 30.769 0.00 0.00 35.99 1.89
361 362 9.332502 ACATATACTATTATTTTGTGTTCGGCA 57.667 29.630 0.00 0.00 0.00 5.69
362 363 9.807386 GACATATACTATTATTTTGTGTTCGGC 57.193 33.333 0.00 0.00 0.00 5.54
420 421 9.642343 GGGGTTTATAAAGGAGAAAATCATAGT 57.358 33.333 0.00 0.00 0.00 2.12
421 422 8.784043 CGGGGTTTATAAAGGAGAAAATCATAG 58.216 37.037 0.00 0.00 0.00 2.23
422 423 7.229907 GCGGGGTTTATAAAGGAGAAAATCATA 59.770 37.037 0.00 0.00 0.00 2.15
423 424 6.040504 GCGGGGTTTATAAAGGAGAAAATCAT 59.959 38.462 0.00 0.00 0.00 2.45
424 425 5.358725 GCGGGGTTTATAAAGGAGAAAATCA 59.641 40.000 0.00 0.00 0.00 2.57
425 426 5.221185 GGCGGGGTTTATAAAGGAGAAAATC 60.221 44.000 0.00 0.00 0.00 2.17
426 427 4.647853 GGCGGGGTTTATAAAGGAGAAAAT 59.352 41.667 0.00 0.00 0.00 1.82
427 428 4.018490 GGCGGGGTTTATAAAGGAGAAAA 58.982 43.478 0.00 0.00 0.00 2.29
428 429 3.010361 TGGCGGGGTTTATAAAGGAGAAA 59.990 43.478 0.00 0.00 0.00 2.52
429 430 2.577105 TGGCGGGGTTTATAAAGGAGAA 59.423 45.455 0.00 0.00 0.00 2.87
430 431 2.092807 GTGGCGGGGTTTATAAAGGAGA 60.093 50.000 0.00 0.00 0.00 3.71
431 432 2.294979 GTGGCGGGGTTTATAAAGGAG 58.705 52.381 0.00 0.00 0.00 3.69
432 433 1.407162 CGTGGCGGGGTTTATAAAGGA 60.407 52.381 0.00 0.00 0.00 3.36
433 434 1.018910 CGTGGCGGGGTTTATAAAGG 58.981 55.000 0.00 0.00 0.00 3.11
434 435 0.379316 GCGTGGCGGGGTTTATAAAG 59.621 55.000 0.00 0.00 0.00 1.85
435 436 1.031029 GGCGTGGCGGGGTTTATAAA 61.031 55.000 0.00 0.00 0.00 1.40
436 437 1.451747 GGCGTGGCGGGGTTTATAA 60.452 57.895 0.00 0.00 0.00 0.98
437 438 2.190048 GGCGTGGCGGGGTTTATA 59.810 61.111 0.00 0.00 0.00 0.98
438 439 3.692370 GAGGCGTGGCGGGGTTTAT 62.692 63.158 0.00 0.00 0.00 1.40
439 440 4.397832 GAGGCGTGGCGGGGTTTA 62.398 66.667 0.00 0.00 0.00 2.01
444 445 3.737172 CTTTTGAGGCGTGGCGGG 61.737 66.667 0.00 0.00 0.00 6.13
445 446 1.586154 ATTCTTTTGAGGCGTGGCGG 61.586 55.000 0.00 0.00 0.00 6.13
446 447 0.240945 AATTCTTTTGAGGCGTGGCG 59.759 50.000 0.00 0.00 0.00 5.69
447 448 1.402852 GGAATTCTTTTGAGGCGTGGC 60.403 52.381 5.23 0.00 0.00 5.01
448 449 2.162681 AGGAATTCTTTTGAGGCGTGG 58.837 47.619 5.23 0.00 0.00 4.94
449 450 3.366374 GGAAGGAATTCTTTTGAGGCGTG 60.366 47.826 4.11 0.00 35.50 5.34
450 451 2.820197 GGAAGGAATTCTTTTGAGGCGT 59.180 45.455 4.11 0.00 35.50 5.68
451 452 3.084786 AGGAAGGAATTCTTTTGAGGCG 58.915 45.455 4.11 0.00 35.50 5.52
452 453 4.379918 CGAAGGAAGGAATTCTTTTGAGGC 60.380 45.833 4.11 0.00 35.50 4.70
453 454 4.379918 GCGAAGGAAGGAATTCTTTTGAGG 60.380 45.833 4.11 0.00 35.50 3.86
454 455 4.379918 GGCGAAGGAAGGAATTCTTTTGAG 60.380 45.833 4.11 0.00 35.50 3.02
455 456 3.506067 GGCGAAGGAAGGAATTCTTTTGA 59.494 43.478 4.11 0.00 35.50 2.69
456 457 3.255642 TGGCGAAGGAAGGAATTCTTTTG 59.744 43.478 4.11 0.00 35.50 2.44
457 458 3.496331 TGGCGAAGGAAGGAATTCTTTT 58.504 40.909 4.11 0.10 35.50 2.27
458 459 3.154827 TGGCGAAGGAAGGAATTCTTT 57.845 42.857 1.90 1.90 35.50 2.52
459 460 2.879103 TGGCGAAGGAAGGAATTCTT 57.121 45.000 5.23 0.00 38.65 2.52
460 461 3.019564 CAATGGCGAAGGAAGGAATTCT 58.980 45.455 5.23 0.00 0.00 2.40
461 462 3.016736 TCAATGGCGAAGGAAGGAATTC 58.983 45.455 0.00 0.00 0.00 2.17
462 463 2.755103 GTCAATGGCGAAGGAAGGAATT 59.245 45.455 0.00 0.00 0.00 2.17
463 464 2.290896 TGTCAATGGCGAAGGAAGGAAT 60.291 45.455 0.00 0.00 0.00 3.01
464 465 1.073125 TGTCAATGGCGAAGGAAGGAA 59.927 47.619 0.00 0.00 0.00 3.36
465 466 0.690192 TGTCAATGGCGAAGGAAGGA 59.310 50.000 0.00 0.00 0.00 3.36
466 467 1.200020 GTTGTCAATGGCGAAGGAAGG 59.800 52.381 0.00 0.00 0.00 3.46
467 468 1.879380 TGTTGTCAATGGCGAAGGAAG 59.121 47.619 0.00 0.00 0.00 3.46
468 469 1.974265 TGTTGTCAATGGCGAAGGAA 58.026 45.000 0.00 0.00 0.00 3.36
469 470 1.606668 GTTGTTGTCAATGGCGAAGGA 59.393 47.619 0.00 0.00 35.92 3.36
470 471 1.336440 TGTTGTTGTCAATGGCGAAGG 59.664 47.619 0.00 0.00 35.92 3.46
471 472 2.772568 TGTTGTTGTCAATGGCGAAG 57.227 45.000 0.00 0.00 35.92 3.79
472 473 2.164422 TGTTGTTGTTGTCAATGGCGAA 59.836 40.909 0.00 0.00 35.92 4.70
473 474 1.745653 TGTTGTTGTTGTCAATGGCGA 59.254 42.857 0.00 0.00 35.92 5.54
474 475 2.200792 TGTTGTTGTTGTCAATGGCG 57.799 45.000 0.00 0.00 35.92 5.69
475 476 3.257393 TGTTGTTGTTGTTGTCAATGGC 58.743 40.909 0.00 0.00 35.92 4.40
476 477 4.687948 TGTTGTTGTTGTTGTTGTCAATGG 59.312 37.500 0.00 0.00 35.92 3.16
477 478 5.835911 TGTTGTTGTTGTTGTTGTCAATG 57.164 34.783 0.00 0.00 35.92 2.82
478 479 5.755375 TGTTGTTGTTGTTGTTGTTGTCAAT 59.245 32.000 0.00 0.00 35.92 2.57
479 480 5.109210 TGTTGTTGTTGTTGTTGTTGTCAA 58.891 33.333 0.00 0.00 0.00 3.18
480 481 4.682787 TGTTGTTGTTGTTGTTGTTGTCA 58.317 34.783 0.00 0.00 0.00 3.58
481 482 5.005779 TGTTGTTGTTGTTGTTGTTGTTGTC 59.994 36.000 0.00 0.00 0.00 3.18
482 483 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
483 484 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
484 485 5.220681 GGTTGTTGTTGTTGTTGTTGTTGTT 60.221 36.000 0.00 0.00 0.00 2.83
485 486 4.271291 GGTTGTTGTTGTTGTTGTTGTTGT 59.729 37.500 0.00 0.00 0.00 3.32
486 487 4.271049 TGGTTGTTGTTGTTGTTGTTGTTG 59.729 37.500 0.00 0.00 0.00 3.33
487 488 4.271291 GTGGTTGTTGTTGTTGTTGTTGTT 59.729 37.500 0.00 0.00 0.00 2.83
488 489 3.804873 GTGGTTGTTGTTGTTGTTGTTGT 59.195 39.130 0.00 0.00 0.00 3.32
489 490 3.185391 GGTGGTTGTTGTTGTTGTTGTTG 59.815 43.478 0.00 0.00 0.00 3.33
490 491 3.181465 TGGTGGTTGTTGTTGTTGTTGTT 60.181 39.130 0.00 0.00 0.00 2.83
491 492 2.365617 TGGTGGTTGTTGTTGTTGTTGT 59.634 40.909 0.00 0.00 0.00 3.32
492 493 2.734079 GTGGTGGTTGTTGTTGTTGTTG 59.266 45.455 0.00 0.00 0.00 3.33
493 494 2.289133 GGTGGTGGTTGTTGTTGTTGTT 60.289 45.455 0.00 0.00 0.00 2.83
494 495 1.273886 GGTGGTGGTTGTTGTTGTTGT 59.726 47.619 0.00 0.00 0.00 3.32
495 496 1.273606 TGGTGGTGGTTGTTGTTGTTG 59.726 47.619 0.00 0.00 0.00 3.33
496 497 1.273886 GTGGTGGTGGTTGTTGTTGTT 59.726 47.619 0.00 0.00 0.00 2.83
497 498 0.892063 GTGGTGGTGGTTGTTGTTGT 59.108 50.000 0.00 0.00 0.00 3.32
498 499 0.174617 GGTGGTGGTGGTTGTTGTTG 59.825 55.000 0.00 0.00 0.00 3.33
499 500 0.251832 TGGTGGTGGTGGTTGTTGTT 60.252 50.000 0.00 0.00 0.00 2.83
500 501 0.968393 GTGGTGGTGGTGGTTGTTGT 60.968 55.000 0.00 0.00 0.00 3.32
501 502 1.671901 GGTGGTGGTGGTGGTTGTTG 61.672 60.000 0.00 0.00 0.00 3.33
502 503 1.380650 GGTGGTGGTGGTGGTTGTT 60.381 57.895 0.00 0.00 0.00 2.83
503 504 2.277404 GGTGGTGGTGGTGGTTGT 59.723 61.111 0.00 0.00 0.00 3.32
504 505 2.124693 GTGGTGGTGGTGGTGGTTG 61.125 63.158 0.00 0.00 0.00 3.77
505 506 2.277404 GTGGTGGTGGTGGTGGTT 59.723 61.111 0.00 0.00 0.00 3.67
506 507 3.816090 GGTGGTGGTGGTGGTGGT 61.816 66.667 0.00 0.00 0.00 4.16
507 508 4.596585 GGGTGGTGGTGGTGGTGG 62.597 72.222 0.00 0.00 0.00 4.61
508 509 1.784301 TATGGGTGGTGGTGGTGGTG 61.784 60.000 0.00 0.00 0.00 4.17
509 510 1.464395 TATGGGTGGTGGTGGTGGT 60.464 57.895 0.00 0.00 0.00 4.16
510 511 1.302949 CTATGGGTGGTGGTGGTGG 59.697 63.158 0.00 0.00 0.00 4.61
511 512 0.035439 GACTATGGGTGGTGGTGGTG 60.035 60.000 0.00 0.00 0.00 4.17
512 513 1.205460 GGACTATGGGTGGTGGTGGT 61.205 60.000 0.00 0.00 0.00 4.16
513 514 1.607612 GGACTATGGGTGGTGGTGG 59.392 63.158 0.00 0.00 0.00 4.61
514 515 1.607612 GGGACTATGGGTGGTGGTG 59.392 63.158 0.00 0.00 0.00 4.17
515 516 1.618447 GGGGACTATGGGTGGTGGT 60.618 63.158 0.00 0.00 0.00 4.16
516 517 2.383601 GGGGGACTATGGGTGGTGG 61.384 68.421 0.00 0.00 0.00 4.61
517 518 2.742116 CGGGGGACTATGGGTGGTG 61.742 68.421 0.00 0.00 0.00 4.17
518 519 2.366435 CGGGGGACTATGGGTGGT 60.366 66.667 0.00 0.00 0.00 4.16
519 520 3.873812 GCGGGGGACTATGGGTGG 61.874 72.222 0.00 0.00 0.00 4.61
520 521 2.768344 AGCGGGGGACTATGGGTG 60.768 66.667 0.00 0.00 0.00 4.61
521 522 2.768344 CAGCGGGGGACTATGGGT 60.768 66.667 0.00 0.00 0.00 4.51
522 523 4.256180 GCAGCGGGGGACTATGGG 62.256 72.222 0.00 0.00 0.00 4.00
523 524 3.164269 AGCAGCGGGGGACTATGG 61.164 66.667 0.00 0.00 0.00 2.74
524 525 1.971505 TTCAGCAGCGGGGGACTATG 61.972 60.000 0.00 0.00 0.00 2.23
525 526 1.689233 TTCAGCAGCGGGGGACTAT 60.689 57.895 0.00 0.00 0.00 2.12
526 527 2.284331 TTCAGCAGCGGGGGACTA 60.284 61.111 0.00 0.00 0.00 2.59
527 528 3.710722 CTTCAGCAGCGGGGGACT 61.711 66.667 0.00 0.00 0.00 3.85
528 529 3.553095 AACTTCAGCAGCGGGGGAC 62.553 63.158 0.00 0.00 0.00 4.46
529 530 3.249189 AACTTCAGCAGCGGGGGA 61.249 61.111 0.00 0.00 0.00 4.81
530 531 3.058160 CAACTTCAGCAGCGGGGG 61.058 66.667 0.00 0.00 0.00 5.40
531 532 3.058160 CCAACTTCAGCAGCGGGG 61.058 66.667 0.00 0.00 0.00 5.73
532 533 3.741476 GCCAACTTCAGCAGCGGG 61.741 66.667 0.00 0.00 0.00 6.13
533 534 3.741476 GGCCAACTTCAGCAGCGG 61.741 66.667 0.00 0.00 0.00 5.52
534 535 2.263741 AAGGCCAACTTCAGCAGCG 61.264 57.895 5.01 0.00 32.85 5.18
535 536 1.288127 CAAGGCCAACTTCAGCAGC 59.712 57.895 5.01 0.00 37.29 5.25
536 537 1.962144 CCAAGGCCAACTTCAGCAG 59.038 57.895 5.01 0.00 37.29 4.24
537 538 2.202395 GCCAAGGCCAACTTCAGCA 61.202 57.895 5.01 0.00 37.29 4.41
538 539 1.747325 TTGCCAAGGCCAACTTCAGC 61.747 55.000 5.01 0.00 37.29 4.26
539 540 0.752054 TTTGCCAAGGCCAACTTCAG 59.248 50.000 5.01 0.00 37.29 3.02
540 541 0.463620 GTTTGCCAAGGCCAACTTCA 59.536 50.000 17.86 0.00 41.62 3.02
541 542 3.289128 GTTTGCCAAGGCCAACTTC 57.711 52.632 17.86 0.00 41.62 3.01
544 545 1.672737 GCATAGTTTGCCAAGGCCAAC 60.673 52.381 17.55 17.55 46.15 3.77
560 561 7.642094 ATGTATCCTTTTACCCTTAGGCATA 57.358 36.000 0.00 0.00 36.11 3.14
614 615 4.106179 TGGGATGGCTCATATGTTAACCAT 59.894 41.667 16.16 16.16 40.52 3.55
615 616 3.461458 TGGGATGGCTCATATGTTAACCA 59.539 43.478 2.48 6.88 0.00 3.67
616 617 4.098914 TGGGATGGCTCATATGTTAACC 57.901 45.455 2.48 1.31 0.00 2.85
618 619 4.584325 GCTTTGGGATGGCTCATATGTTAA 59.416 41.667 1.90 0.00 0.00 2.01
619 620 4.144297 GCTTTGGGATGGCTCATATGTTA 58.856 43.478 1.90 0.00 0.00 2.41
620 621 2.961062 GCTTTGGGATGGCTCATATGTT 59.039 45.455 1.90 0.00 0.00 2.71
625 641 0.396695 CTGGCTTTGGGATGGCTCAT 60.397 55.000 0.00 0.00 0.00 2.90
627 643 1.000396 ACTGGCTTTGGGATGGCTC 60.000 57.895 0.00 0.00 0.00 4.70
635 651 1.593196 TTGAACTCGACTGGCTTTGG 58.407 50.000 0.00 0.00 0.00 3.28
1000 1031 1.000396 GTTTGGAGGCTGGGAGCAT 60.000 57.895 0.00 0.00 44.75 3.79
1859 1899 2.092211 CGCGCACTCTCGATTTACTTTT 59.908 45.455 8.75 0.00 0.00 2.27
2017 2069 3.118482 TCCTGAATCTGAATGTGCCTCTC 60.118 47.826 0.00 0.00 0.00 3.20
2018 2070 2.842496 TCCTGAATCTGAATGTGCCTCT 59.158 45.455 0.00 0.00 0.00 3.69
2019 2071 3.272574 TCCTGAATCTGAATGTGCCTC 57.727 47.619 0.00 0.00 0.00 4.70
2020 2072 3.201487 TGATCCTGAATCTGAATGTGCCT 59.799 43.478 0.00 0.00 35.24 4.75
2021 2073 3.548770 TGATCCTGAATCTGAATGTGCC 58.451 45.455 0.00 0.00 35.24 5.01
2022 2074 3.003482 GCTGATCCTGAATCTGAATGTGC 59.997 47.826 0.00 0.00 35.84 4.57
2023 2075 4.452825 AGCTGATCCTGAATCTGAATGTG 58.547 43.478 0.00 0.00 35.84 3.21
2024 2076 4.774660 AGCTGATCCTGAATCTGAATGT 57.225 40.909 0.00 0.00 35.84 2.71
2025 2077 4.276183 CCAAGCTGATCCTGAATCTGAATG 59.724 45.833 0.00 0.00 35.84 2.67
2026 2078 4.462133 CCAAGCTGATCCTGAATCTGAAT 58.538 43.478 0.00 0.00 35.84 2.57
2027 2079 3.882444 CCAAGCTGATCCTGAATCTGAA 58.118 45.455 0.00 0.00 35.84 3.02
2028 2080 2.421107 GCCAAGCTGATCCTGAATCTGA 60.421 50.000 0.00 0.00 35.84 3.27
2029 2081 1.948145 GCCAAGCTGATCCTGAATCTG 59.052 52.381 0.00 0.00 35.24 2.90
2030 2082 1.845143 AGCCAAGCTGATCCTGAATCT 59.155 47.619 0.00 0.00 37.57 2.40
2031 2083 2.220313 GAGCCAAGCTGATCCTGAATC 58.780 52.381 0.00 0.00 39.88 2.52
2032 2084 1.133853 GGAGCCAAGCTGATCCTGAAT 60.134 52.381 1.22 0.00 39.88 2.57
2033 2085 0.254178 GGAGCCAAGCTGATCCTGAA 59.746 55.000 1.22 0.00 39.88 3.02
2034 2086 1.630126 GGGAGCCAAGCTGATCCTGA 61.630 60.000 8.13 0.00 39.88 3.86
2035 2087 1.153005 GGGAGCCAAGCTGATCCTG 60.153 63.158 8.13 0.00 39.88 3.86
2036 2088 0.918310 AAGGGAGCCAAGCTGATCCT 60.918 55.000 8.13 0.00 39.88 3.24
2037 2089 0.839946 TAAGGGAGCCAAGCTGATCC 59.160 55.000 0.00 0.00 39.88 3.36
2038 2090 2.717639 TTAAGGGAGCCAAGCTGATC 57.282 50.000 0.00 0.00 39.88 2.92
2039 2091 2.578021 TCTTTAAGGGAGCCAAGCTGAT 59.422 45.455 0.00 0.00 39.88 2.90
2140 2217 5.217978 ACCAACGTACAATTAACTCCTCA 57.782 39.130 0.00 0.00 0.00 3.86
2200 2279 6.957631 TCATGTTGGTGATTACATAGTTCCT 58.042 36.000 0.00 0.00 33.42 3.36
2201 2280 7.201732 CCTTCATGTTGGTGATTACATAGTTCC 60.202 40.741 0.00 0.00 33.42 3.62
2202 2281 7.201732 CCCTTCATGTTGGTGATTACATAGTTC 60.202 40.741 0.00 0.00 33.42 3.01
2203 2282 6.603201 CCCTTCATGTTGGTGATTACATAGTT 59.397 38.462 0.00 0.00 33.42 2.24
2204 2283 6.122277 CCCTTCATGTTGGTGATTACATAGT 58.878 40.000 0.00 0.00 33.42 2.12
2205 2284 5.532406 CCCCTTCATGTTGGTGATTACATAG 59.468 44.000 0.00 0.00 33.42 2.23
2206 2285 5.445069 CCCCTTCATGTTGGTGATTACATA 58.555 41.667 0.00 0.00 33.42 2.29
2207 2286 4.280819 CCCCTTCATGTTGGTGATTACAT 58.719 43.478 0.00 0.00 35.45 2.29
2208 2287 3.696045 CCCCTTCATGTTGGTGATTACA 58.304 45.455 0.00 0.00 0.00 2.41
2209 2288 2.427095 GCCCCTTCATGTTGGTGATTAC 59.573 50.000 0.00 0.00 0.00 1.89
2210 2289 2.311542 AGCCCCTTCATGTTGGTGATTA 59.688 45.455 0.00 0.00 0.00 1.75
2211 2290 1.077663 AGCCCCTTCATGTTGGTGATT 59.922 47.619 0.00 0.00 0.00 2.57
2212 2291 0.706433 AGCCCCTTCATGTTGGTGAT 59.294 50.000 0.00 0.00 0.00 3.06
2213 2292 0.038166 GAGCCCCTTCATGTTGGTGA 59.962 55.000 0.00 0.00 0.00 4.02
2214 2293 0.038744 AGAGCCCCTTCATGTTGGTG 59.961 55.000 0.00 0.00 0.00 4.17
2215 2294 0.779997 AAGAGCCCCTTCATGTTGGT 59.220 50.000 0.00 0.00 0.00 3.67
2216 2295 1.928868 AAAGAGCCCCTTCATGTTGG 58.071 50.000 0.00 0.00 33.02 3.77
2217 2296 2.232208 GGAAAAGAGCCCCTTCATGTTG 59.768 50.000 0.00 0.00 33.02 3.33
2218 2297 2.529632 GGAAAAGAGCCCCTTCATGTT 58.470 47.619 0.00 0.00 33.02 2.71
2219 2298 1.272704 GGGAAAAGAGCCCCTTCATGT 60.273 52.381 0.00 0.00 39.81 3.21
2220 2299 1.478631 GGGAAAAGAGCCCCTTCATG 58.521 55.000 0.00 0.00 39.81 3.07
2227 2306 0.409876 AGAAAGGGGGAAAAGAGCCC 59.590 55.000 0.00 0.00 45.25 5.19
2228 2307 2.171840 GAAGAAAGGGGGAAAAGAGCC 58.828 52.381 0.00 0.00 0.00 4.70
2229 2308 3.162147 AGAAGAAAGGGGGAAAAGAGC 57.838 47.619 0.00 0.00 0.00 4.09
2230 2309 4.729868 TCAAGAAGAAAGGGGGAAAAGAG 58.270 43.478 0.00 0.00 0.00 2.85
2231 2310 4.806952 TCAAGAAGAAAGGGGGAAAAGA 57.193 40.909 0.00 0.00 0.00 2.52
2232 2311 7.724490 ATATTCAAGAAGAAAGGGGGAAAAG 57.276 36.000 0.00 0.00 40.22 2.27
2235 2314 9.237706 ACTATATATTCAAGAAGAAAGGGGGAA 57.762 33.333 0.00 0.00 40.22 3.97
2236 2315 8.814448 ACTATATATTCAAGAAGAAAGGGGGA 57.186 34.615 0.00 0.00 40.22 4.81
2237 2316 9.945904 GTACTATATATTCAAGAAGAAAGGGGG 57.054 37.037 0.00 0.00 40.22 5.40
2238 2317 9.640963 CGTACTATATATTCAAGAAGAAAGGGG 57.359 37.037 0.00 0.00 40.22 4.79
2239 2318 9.141400 GCGTACTATATATTCAAGAAGAAAGGG 57.859 37.037 0.00 0.00 40.22 3.95
2240 2319 9.692749 TGCGTACTATATATTCAAGAAGAAAGG 57.307 33.333 0.00 0.00 40.22 3.11
2242 2321 9.177304 CGTGCGTACTATATATTCAAGAAGAAA 57.823 33.333 1.24 0.00 40.22 2.52
2243 2322 8.347771 ACGTGCGTACTATATATTCAAGAAGAA 58.652 33.333 1.24 0.00 41.28 2.52
2244 2323 7.868775 ACGTGCGTACTATATATTCAAGAAGA 58.131 34.615 1.24 0.00 0.00 2.87
2245 2324 8.503486 AACGTGCGTACTATATATTCAAGAAG 57.497 34.615 1.24 0.00 0.00 2.85
2246 2325 7.321984 CGAACGTGCGTACTATATATTCAAGAA 59.678 37.037 8.08 0.00 0.00 2.52
2247 2326 6.793680 CGAACGTGCGTACTATATATTCAAGA 59.206 38.462 8.08 0.00 0.00 3.02
2248 2327 6.576313 ACGAACGTGCGTACTATATATTCAAG 59.424 38.462 22.65 0.00 43.61 3.02
2249 2328 6.357766 CACGAACGTGCGTACTATATATTCAA 59.642 38.462 23.54 0.00 43.59 2.69
2250 2329 5.847515 CACGAACGTGCGTACTATATATTCA 59.152 40.000 23.54 0.00 43.59 2.57
2251 2330 6.284078 CACGAACGTGCGTACTATATATTC 57.716 41.667 23.54 0.00 43.59 1.75
2267 2346 1.249491 CTTCTCGAATACGCACGAACG 59.751 52.381 0.00 0.00 38.05 3.95
2268 2347 2.512885 TCTTCTCGAATACGCACGAAC 58.487 47.619 0.00 0.00 38.05 3.95
2269 2348 2.905959 TCTTCTCGAATACGCACGAA 57.094 45.000 0.00 0.00 38.05 3.85
2270 2349 2.161012 ACTTCTTCTCGAATACGCACGA 59.839 45.455 0.00 0.00 39.58 4.35
2271 2350 2.516923 ACTTCTTCTCGAATACGCACG 58.483 47.619 0.00 0.00 39.58 5.34
2272 2351 3.790288 GGTACTTCTTCTCGAATACGCAC 59.210 47.826 0.00 0.00 39.58 5.34
2273 2352 3.441222 TGGTACTTCTTCTCGAATACGCA 59.559 43.478 0.00 0.00 39.58 5.24
2274 2353 4.025015 TGGTACTTCTTCTCGAATACGC 57.975 45.455 0.00 0.00 39.58 4.42
2275 2354 7.376336 CAGTTATGGTACTTCTTCTCGAATACG 59.624 40.741 0.00 0.00 41.26 3.06
2276 2355 8.404000 TCAGTTATGGTACTTCTTCTCGAATAC 58.596 37.037 0.00 0.00 0.00 1.89
2277 2356 8.515695 TCAGTTATGGTACTTCTTCTCGAATA 57.484 34.615 0.00 0.00 0.00 1.75
2278 2357 7.406031 TCAGTTATGGTACTTCTTCTCGAAT 57.594 36.000 0.00 0.00 0.00 3.34
2279 2358 6.127703 CCTCAGTTATGGTACTTCTTCTCGAA 60.128 42.308 0.00 0.00 0.00 3.71
2280 2359 5.357314 CCTCAGTTATGGTACTTCTTCTCGA 59.643 44.000 0.00 0.00 0.00 4.04
2281 2360 5.583495 CCTCAGTTATGGTACTTCTTCTCG 58.417 45.833 0.00 0.00 0.00 4.04
2282 2361 5.128008 AGCCTCAGTTATGGTACTTCTTCTC 59.872 44.000 0.00 0.00 0.00 2.87
2283 2362 5.026790 AGCCTCAGTTATGGTACTTCTTCT 58.973 41.667 0.00 0.00 0.00 2.85
2284 2363 5.346181 AGCCTCAGTTATGGTACTTCTTC 57.654 43.478 0.00 0.00 0.00 2.87
2285 2364 5.248477 TCAAGCCTCAGTTATGGTACTTCTT 59.752 40.000 0.00 0.00 0.00 2.52
2286 2365 4.777896 TCAAGCCTCAGTTATGGTACTTCT 59.222 41.667 0.00 0.00 0.00 2.85
2287 2366 5.086104 TCAAGCCTCAGTTATGGTACTTC 57.914 43.478 0.00 0.00 0.00 3.01
2288 2367 5.499004 TTCAAGCCTCAGTTATGGTACTT 57.501 39.130 0.00 0.00 0.00 2.24
2289 2368 5.700402 ATTCAAGCCTCAGTTATGGTACT 57.300 39.130 0.00 0.00 0.00 2.73
2290 2369 5.066505 CCAATTCAAGCCTCAGTTATGGTAC 59.933 44.000 0.00 0.00 0.00 3.34
2291 2370 5.192927 CCAATTCAAGCCTCAGTTATGGTA 58.807 41.667 0.00 0.00 0.00 3.25
2292 2371 4.019174 CCAATTCAAGCCTCAGTTATGGT 58.981 43.478 0.00 0.00 0.00 3.55
2293 2372 4.019174 ACCAATTCAAGCCTCAGTTATGG 58.981 43.478 0.00 0.00 0.00 2.74
2294 2373 5.066505 GGTACCAATTCAAGCCTCAGTTATG 59.933 44.000 7.15 0.00 0.00 1.90
2295 2374 5.193679 GGTACCAATTCAAGCCTCAGTTAT 58.806 41.667 7.15 0.00 0.00 1.89
2296 2375 4.042311 TGGTACCAATTCAAGCCTCAGTTA 59.958 41.667 13.60 0.00 0.00 2.24
2297 2376 3.181434 TGGTACCAATTCAAGCCTCAGTT 60.181 43.478 13.60 0.00 0.00 3.16
2298 2377 2.375174 TGGTACCAATTCAAGCCTCAGT 59.625 45.455 13.60 0.00 0.00 3.41
2299 2378 2.749621 GTGGTACCAATTCAAGCCTCAG 59.250 50.000 18.31 0.00 0.00 3.35
2300 2379 2.375174 AGTGGTACCAATTCAAGCCTCA 59.625 45.455 18.31 0.00 0.00 3.86
2301 2380 3.073274 AGTGGTACCAATTCAAGCCTC 57.927 47.619 18.31 0.00 0.00 4.70
2307 2386 7.982761 AAAAACGTATAGTGGTACCAATTCA 57.017 32.000 21.58 3.33 0.00 2.57
2334 2413 3.007398 CCCCAGACTAGGTATTGATCTGC 59.993 52.174 0.00 0.00 36.32 4.26
2342 2421 1.400530 GCGTGCCCCAGACTAGGTAT 61.401 60.000 0.00 0.00 0.00 2.73
2362 2441 4.725280 CACGTATCAGATTGATTTGTTGCG 59.275 41.667 0.00 0.00 38.26 4.85
2372 2451 6.474819 TGTGTTTAACCACGTATCAGATTG 57.525 37.500 0.00 0.00 38.20 2.67
2383 2462 4.501198 CCGTGTCAAAATGTGTTTAACCAC 59.499 41.667 0.00 0.00 35.86 4.16
2417 2496 1.045407 AACTGACAAGCGTACCCTGA 58.955 50.000 0.00 0.00 0.00 3.86
2424 2503 1.948104 TGTTAGCAACTGACAAGCGT 58.052 45.000 0.00 0.00 27.18 5.07
2425 2504 2.413239 CCATGTTAGCAACTGACAAGCG 60.413 50.000 0.00 0.00 33.87 4.68
2471 2550 9.899661 GATTAAATATAAAGCAAGGGGGTTTTT 57.100 29.630 0.00 0.00 44.39 1.94
2499 2578 1.052287 GCAAACGAGGTGATTTTGCG 58.948 50.000 2.79 0.00 43.99 4.85
2510 2589 2.866510 CACGCGCATGCAAACGAG 60.867 61.111 25.64 16.78 42.97 4.18
2568 2647 2.423446 GGGCTCGCGATGAAGGAT 59.577 61.111 10.36 0.00 0.00 3.24
2621 2700 2.435059 GGTGTCGGGAGAAGCAGC 60.435 66.667 0.00 0.00 42.89 5.25
2659 2738 0.683828 TAAGCATGGGGTGTGCATGG 60.684 55.000 0.00 0.00 44.87 3.66
2668 2747 1.414181 ACGAGACAGATAAGCATGGGG 59.586 52.381 0.00 0.00 0.00 4.96
2723 2802 2.600439 CTCCTCATGGTGGAGCTCA 58.400 57.895 17.19 0.00 43.67 4.26
2815 2894 2.352422 GTGGAGAGGTGCATGGCA 59.648 61.111 0.00 0.00 35.60 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.