>input_sequence_67276
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----------------------------------------------------------------------ATGCTCCCAG
CCTCCAAACGACCACTCTCCCCCGCTCAGCTCCCACACTCGCCTCCCATGGCGTCCCTCCTCTTCCTGCCGCGCACGACG
CCCACGGCCTCCCCGCGCGCCGCGGCCAGGCCCAGGGCCGGGGCCATCACCTGCGGCCCGCGCGACAACCGCGGCCCGCT
CCAGCGCGGCCGCTCCCTCTCCACGGAGGCCATCCACGCCGTGCAGTCCCTCAAGCGCCTCACCGCCGCCGACCGCTCCC
CGTCGGCCGCCCGCGGCGCGGCCTCCGCGTCCCTCGGCCGCCTCCTCCGGGCCGATCTCCTCGCCGCCATGGCCGAGCTC
CAGCGGCAGGGCCACTGGTCCCTCGCCCTCGCCGCGCTCCACGTGGCGCGCGCCGAGCCCTGGTACCGGCCCGACCCGGA
GCTCTACGCCACGTTCGTCTCCTCCTCGCCGCCCTCCGAGGCCGCCGGCGGCGCCGTGGACGCGCTCGTGGAGGCGTTCC
TCGAGGAGAAGGAGGAGCGGC---GCGGCGGCGGGCGGCTCTCGGAGTCGGAGGGGCCGTGGGTGGGGGTGGACGTGTAC
AAGCTCACGAGGCTGGTGCGCGCGCTGGTGGCCAAGGGCAGGGCGCGCGCGGCGTGGCGGGTGTACGAGGCGGCGGTGAG
GAGGGGAGGCTGCGAGGTGGACGAGTACATGTACCGGGTGATGGCGCGGGGGATGAAGCGGCTGGGGCTCGAGGCCGAGG
CGGCGGAGGTGGAGGCCGACTTCGCCGAGTGGGAGGCCAGGGTCTCGCCGCCGGCGAGGCACCTGCTCGACGAAATGCGC
GCGAGGGAGGAGAGCAACAAGACGACGACG------ACGGCTTAG-----------------------------------
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>chr3D_1_TraesCS3D01G135700
GACTTGACTGCACGGACGAATTAAATTACAAATACACGATCCAACCAGCCAACTGGCGATTGCGAGTTTCAAAAATCCTA
GAAAGTCGAAACCCTCATGAATCCATAATTCTGCATGTAAGTGACAACAGTCAGCGAGTAGCTTCCGTCGTCCGGTGAGT
CGGGTGAGATAATGAGGACGCGAAACGAATGAGATGTGCGCGGAAGGCGCAGAAGAAAAAAGGAAGTGCATAATGAAATA
TAATTCAGAATTAAAATTAACTTTAGTTTGAAGCAAATTTTGTTGACGTCAAATAAAATAAGATCCACAATTCTAACGAT
CTGTTGATACTGAAACTAATCTATTTGTTTTAGGTTGTATTTGCCGAACACAAAATAATAGTATATGTCTAGTATTAGTA
AGTTTCTATAGTTGTATTATACTATGATTTTCTCCTTTATAAACCCCGCCACGCCTCAAAAGAATTCCTTCCTTCGCCAT
TGACAACAACAACAACAACAACAACAACCACCACCACCACCACCCATAGTCCCCCGCTGCTGAAGTTGGCCTTGGCAAAC
TATGCCTAAGGGTAAAAGGATACATATTTTACAACCTAAAATATCTGATTTTGGATGGTTA---------------ACAT
ATGAGCCATCCCAAAGCCAGTCGAGTTCAATTAAAAAATCCAGATCCAAGGTAAGGTGCATAGCAAATCTTCGATAATGT
CTCAAAGCATGCAAACAACATC-CAAAAAATGTCGTCGGCAGCGGCA--TATGATGCAGATTCACTTCATAAGAAGTAGG
CCCATAGTTTGAGTTCCACATGAAGCTTTGAGCTCCTTCGGTAAACATAG-------CCGCAAGATGCATTTTGGGATGT
TCTGTACACTAGCCAATTATCCATCCTTCTTCGTTTAGAAATTTTTGCACACATAGGATGAAAG----TAGAGTTTCGAG
GGATCAGACGGTTCCCAAGCCACCCGTAAAAATCCGCAGCGAAACGCATCATCCCCTT-CCTTCCTCGTCATGCTCCCAG
CCTCCAAACGACCACTCTCCCCCGCTCAGCTCCCACACTCGCCTCCCATGGCGTCCCTCCTCTTCCTGCCGCGCACGACG
CCCACGGCCTCCCCGCGCGCCGCGGCCAGGCCCAGGGCCGGGGCCATCACCTGCGGCCCGCGCGACAACCGCGGCCCGCT
CCAGCGCGGCCGCTCCCTCTCCACGGAGGCCATCCACGCCGTGCAGTCCCTCAAGCGCCTCACCGCCGCCGACCGCTCCC
CGTCGGCCGCCCGCGGCGCGGCCTCCGCGTCCCTCGGCCGCCTCCTCCGGGCCGATCTCCTCGCCGCCATGGCCGAGCTC
CAGCGGCAGGGCCACTGGTCCCTCGCCCTCGCCGCGCTCCACGTGGCGCGCGCCGAGCCCTGGTACCGGCCCGACCCGGA
GCTCTACGCCACGTTCGTCTCCTCCTCGCCGCCCTCCGAGGCCGCCGGCGGCGCCGTGGACGCGCTCGTGGAGGCGTTCC
TCGAGGAGAAGGAGGAGCGGC---GCGGCGGCGGGCGGCTCTCGGAGTCGGAGGGGCCGTGGGTGGGGGTGGACGTGTAC
AAGCTCACGAGGCTGGTGCGCGCGCTGGTGGCCAAGGGCAGGGCGCGCGCGGCGTGGCGGGTGTACGAGGCGGCGGTGAG
GAGGGGAGGCTGCGAGGTGGACGAGTACATGTACCGGGTGATGGCGCGGGGGATGAAGCGGCTGGGGCTCGAGGCCGAGG
CGGCGGAGGTGGAGGCCGACTTCGCCGAGTGGGAGGCCAGGGTCTCGCCGCCGGCGAGGCACCTGCTCGACGAAATGCGC
GCGAGGGAGGAGAGCAACAAGACGACGACG------ACGGCTTAGTATTTTTGTACTGAAAAGTAAATCGAGAGTGCGCG
AGTGTGATCATTGTGTTCTTTTATTACTGGAAA---GTAAAAATGTCGTGCTGCTTGCCACAGTTCATGTCCAGAAAGTT
CACAGCGAACAAGTTCAATTTCGACATGAATTTCCGTAGTATCAATTTCCACA---------TCAGGCGAGAGGCACATT
CAGATTCAGGATCAGCTTGGCTCCCTTAAAGATTCAGG-------------------------ATCATTCATATTTGCTG
GGCAATTTCGATCACAAAGAAAGACTTCATCTTCAGGGGGATTATTCCAGCTTATATGAGG--AGTTAATTGTACGTTGG
TACTTAAATAATATTGATCGAAGGAAGTACCATAACTGAGGAACTATGTAATCACCAACATGAAGGGGCTCTTTTCCCCC
TTTCTTCTTGAATATATAGTACGCACGTTCGTGCGTATTCGAGAAGAAGTACCATAACTGAGGCTTGAATTGGTACCACT
ATACGTTTTTTCGCAGATCAATACCTAGTCTGGGGCACGCCGCAACAAATCAATCTGATACGTGGTTAAACACATTTTGA
CACGGAAACTGACAGTCAGGGTACGCTTGTCAGTTGCTAACATGGCGTGTCGTGTCCATGTTTTTTGCAAAAAACCCCCT
TGCTTTATATTTAATCACGCAAAATCACCTCGTTTGCATGCGCGTGGCCCAAAGCAGCCATAGCCCACTGGCTAGGCACC
AGTCGTATCCTTCATCGCGAGCCCGTGGACAGAGCGTGCGAACACGCGCCTCGCTGCCTGCTGCTTCTCCCGACACCGCA
AGGCGCAGTTAAGAGTGCCATGCACACCCCATGCTTATCTGTCTCGTTTCCGCCCATTTTCCCTTTCCCCTCTCTCGTTT
TTGAGCTCCACCATGAGGAGCCGGAGCGTCATGAACCAGCGAGCCAAAACCACCACCTGGCCTTTTTCGTCGTGTCGAAC
CGCTCCGCCCCGATGCCATGCACCTCTCCACCGACAAAACACAG
>chr3B_540
CTGAG---------------------------------------------------------------------------
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-----------------------------------------------------------------TTGGCCTTGGCAAAC
GATGCCTAAGGGTAGAAGGATGCATATTTTACAATTTAAAATATCTGATTTTGGGATGGCTAACATGTGTTAGCCCACAT
GTTAGCCATCTCAAAGCCAGTCGAGTTCAATCAAAATATCCAGATCCAAGGTAAGGTGCATAGCATATCTTCGATAATGT
CTCAAAGCATGCAAACAACACCAAAAAAGAAGTCGTCGGCAGCGGCATATATGATGCAGATTCACTTCATAAGAAGTAGG
CCCATAGTTTGATTTCCACAGGAAGCTTTGAGCTCCTTCGGAACAATAGGCCGCAGCCCGCAAGATGCATTTTGGGATGT
TCTGTACACTAGCCAATTATCCATCCTTCTTCGTTTAGAAAATTCGGTACAGATAGGATGAAAGGATCTAGAGTTTCGAG
GGATCAGACGGTTCCCAAGCCACCCGTAAAAGTCCGCAGCGAAACGCATCATCCCCTT-TCTTCCTCCTCGTGCTCCCAG
CCTCCAAACGACCACTCTCCCCCGCTCAGCTCCCACCCTCGCCTCCCATGGCGTCTCTCCTCTTCCTGCCGCACACGACC
CCCACGGCCTCCCCGCGCGCCGCGGCCAGGCCCAGGGCCGGGGCCATCACCTGCGGCCCGCGCGACAACCGCGGCCCGCT
CCAGCGCGGCCGCTCCCTCTCCACCGAGGCCATCCACGCCGTGCAGTCCCTCAAGCGCCTCACCGCCGCCGACCGCTCCC
CGTCGGCCGCCCGCGGCGCGGCCTCCGCGTCCCTCGGCCGCCTCCTCCGGGCCGATCTCCTCGCCGCCATGGCCGAGCTC
CAGCGCCAGGGCCACTGGTCCCTCGCCCTCGCCGCGCTCCACGTGGCGCGCGCCGAGCCCTGGTACCGGCCCGACCCGGA
GCTCTACGCCACGTTCGTCTCCTCCTCGCCGCCCTCCGAGGCCGCCGCCGGCGCCGTGGACGCGCTCGTGGAGGCGTTCC
TCGAGGAGAAGGAGGAGGGGC---GCG---GCGGGCGGCTCTCGGAGTCGGAGGGGCCGTGGGTGGGGGTGGACGTGTAC
AGGCTCACGAGGCTGGTGCGCGCGCTGGTGGCCAAGGGCAGGGCGCGCGCGGCGTGGCGGGTGTACGAGGCGGCGGTGAG
GAGGGGAGGCTGCGACGTGGACGAGTACATGTACCGGGTGATGGCGCGGGGGATGAAGCGGCTGGGGCTCGAGGCCGAGG
CGGCGGAGGTGGAGGCCGACTTCGCCGAGTGGGAGGCCAGGGTCTCGCCGCCGGCGAGGCATCTGCTCGACGAAATGCGC
GCGAGGGAGGAGAGCGACAAGACGACGACGCCGACGACGGCTTAGTATTTTTGTACTGCAAAGTAAATCGAGAGTGCACG
AGTGTGATCATTGTATTATTTT-TTACTGGAAAAAAGTAAAAATGTCGTGCTGCTTGCCACAGTTCATGTCCAGAAATTT
CACAGCGAACAAGTTCAATTTCGACATGAATTTCCGTACTCAGGCGAGAGGCACATTCAGATTCAGGA------------
-----------TTAGCTTGGCTCCCTTAAAGATTTGATGCATTTGCCTTTCCTCATGGACATTATTATTCATATTTCCTA
GGCAATTTCGATCACAAAGAACTACTTCATCTTCAGGGGGATTACTCCAAACTTATATAAGTTAGTTAATTGCACGATTG
GTACT---------------------------------------------------------------------------
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>chr3D_647
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---------------------CGAGTTCAATCAAAAAATCCAGATCCAAGGTAAGTTGCATAGCAAATCTTCGATCATGT
CTCAAAGCATGCAAACGACACC-AAAAAAATGTCGTCGACAGCGGCA--TATGATGCAGATTCACTTCATAAGAAGTAGG
CCCATAGTATGAGTTCCACATGAAGCTTTGAGCTCCTTCAGTAAACAAAG-------CCGCAAGATGCATTTTGGGATGT
TCTGTACACTAGCCAATTATCCATCCTTCTTCGTTTAGAAATTTTTGCACACATAGGATGAAAG----TAGAGTTTCGAG
GGATCAGACGGTTCCCAAGCCACCCGTAAAAATCCGCAGCGAAACGCATCATCCCCTTTCCTTCCTCGTCGTGCTCCCAG
CCTCCAAACGACCACTCTCCCCCGCTCAGCTCCCACACTCGCCTCCCATGGCGTCCCTCCTCTTCCTGCCGCACACGACG
CCCACGGCCTCCCCGCGCGCCGCGGCCAGGCCTAGGGCCGGGGCCATCACCTGCGGCCCGCGCGACAACCGCGGCCCGCT
CCAGCGCGGCCGCTCCCTCTCCACGGAGGCCATCCACGCCGTGCAGTCCCTCAAGCGCCTCACCGCCGCCGACCGCTCCC
CGTCGGCCGCCCGCGGCGCGGCCTCCGCGTCCCTCGGCCGCCTCCTCCGGGCCGATCTCCTCGCCGCCATGGCCGAGCTC
CAGCGGCAGGGCCACTGGTCCCTCGCCCTCGCCGCGCTCCACGTGGCGCGCGCCGAGCCCTGGTACCGGCCCGACCCGGA
GCTCTACGCCACGTTCGTCTCCTCCTCGCCGCCCTCCGAGGCCGCCGGCGGCGCCGTGGACGCGCTCGTGGAGGCGTTCC
TCGAGGAGAAGGAGGAGCGGCGCGGCG---GCGGGCGGCTCTCGGAGTCGGAGGGGCCGTGGGTGGGGGTGGACGTGTAC
AAGCTCACGAGGCTGGTGCGCGCGCTGGTGGCCAAGGGCAGGGCGCGCGCGGCGTGCCGGGTGTACGAGGCGGCGGTGAG
GAGGGGAGGCTGCGAGGTGGACGAGTACATGTACCGGGTGATGGCGCGGGGGATGAAGCGGCTGGGGCTCGAGGCCGAGG
CGGCGGAGGTGGAGGCCGACTTCGCCGAGTGGGAGGCCAGGGTCTCGCCGCCGGCGAGGCACCTGCTCGACGAAATGCGC
GCGAGGGAGGAGAGCAACAAGACGACG------ACGACGGCTTAGTATTTTTGTACTGCAAAGTAAATCGAGAGTGCGCG
AGTGTGATCATTGTGTTCTTTTATTACTGGAAA---GTAAAAATGTCGTGCTGCTTGCCACAGTTCATGTCCAGAAAGTT
CACAGCGAACAAGTTCAATTTCGACATGAATTTCCGTAGTATCAATTTCCACA---------TCAGGC------------
-----------TCAGCTTGGCTCCCTTAAAGATTCAGG-------------------------ATCATTGATATTTGCTG
GGCAATTTCGATCACAAAGAAAGACTTCATCTTCAGGGGGATTATTCCAGCTTATACGAGG--AGTTAATTGTACGTTGG
TACTTAAATAATATTGATCGAAGGAAGTACCATAACTG------------------------------------------
------------------------------------------------------------AGGCTCGAATTGGTATCACT
TCACGTTTTTTCACAGATCAGTACCTAGTCTGGGGCACGCTGCAACAAATTAATCTGATACATGGTTAAACACATTTTGA
CACGGAAACTGACAGGCAGGGTCTGCTTGTCAGTTGCTAACATGGCGTGTCGTGTCCATGTTTTTTGCAGAAAACCCCCT
TGCTTTATATTTAATCATGCAAAATCACATCGTTTGCATGCGCGTGGCCCAAAGCAACCATGACCCACTGGCTAGGCACC
AGTCGTCTCCTTCATCGCGAGCCCGTGGACAGAGCGTGCGAACACGCGCCTCGCTGCCTCCTGCTTCTCCCGACACCGCA
AGGCGCGGTTAAGAGTGTCATGCACAACCCATGCTTATCTGTCTCGTTTCCGCCCATTTTCCCTTTCCCCTCTCTCGTTT
T-GAGCTCCACCATGAGGAGCCGGAGCGTCATGAACCAGCGAGCTAAAACCACCACCTGGCCTTCTTCGTCGTGTCGAAC
CGCTCCGCCCCGACGCCATGCACCTCTCCACCGACAAAACACA-
>chr3A_924
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------------------------------------------------------------------------GTTTAGAG
AGATCAGACGGTTCCCAAGCCACCCGTAAAAATCCGCAGCGAAACGCATCATCCCCTTTC-TTCCTCGTCGTGCTCCCGG
CCTCCACACGACCACTCTCCCCCGCTCAGCTCCCATCCTCGCCTCCCATGGTGTCTCTCCTCTTCCTGCCGCGCACGACG
CCCACGGCGTCCCCGCGCGCCGCGGCCAGGCCCAGGGCCGGGGCCATCACCTGCGGCCCGCGCGACAACCGCGGCCCACT
CCAGCGCGGCCGCTCCCTCTCCACGGAGGCCATCCACGCCGTGCAGTCCCTCAAGCGCCTCACCGCCGCCGACCGCTCCC
CGTCGGCCGCCCGCGGCGCGGCCTCCGCGTCCCTCGGCCGCCTCCTCCGGGCCGACCTCCTCGCCGCCATGGCCGAGCTC
CAGCGGCAGGGCCACTGGTCCCTCGCCCTCGCCGCGCTCCACGTGGCGCGCGCCGAGCCCTGGTACCGGCCCGACCCGGA
GCTCTACGCCACGTTCGTCTCCTCCTCGCCGCCCTCCGAGGCCGCCGCCGGCGCCGTGGACGCGCTCGTGGAGGCGTTCC
TCGAGGAGAAGGAGGAGGGGC---GCG---GCGGGCGGCTCTCGGAGTCGGAGGGGCCGTGGGTGGGGGCGGACGTGTAC
AAGCTCACCAGGCTGGTGCGCGCGCTGGTGGCCAAGGGCAGGGCGCGCGCGGCGTGGAGGGTGTACGAGGCGGCGGTGAG
GAGGGAAGGCTGCGAGGTGGACGAGTACATGTACCGGGTGATGGCGCGGGGGATGAAGCGGCTGGGGCTCGAGGCCGAGG
CGGCGGAGGTGGAGGCCGACTTTGCGGAGTGGGAGGTCAGGGTCTCGCCGCCGGCGAGGCACCTGCTCGACGAAATGCGC
GCGAGGGAGAACAGCAACAAGACGGCG------ACGACGGCTTAGTTTTCTTGTACTGGAAAATAAATCTAGAGAACACG
AGTGTGATTAATTGTT--TTCTTTTACTGGATA---CTTAAAATGTCGTCCTGCT-------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------
S-------------S------S------------SS------------------SSS-SSS-------------------
S-S-------S--------------------S------------------------------------------------
--------------------S--S--------------------------------------------------------
-----------------------------------------------S--------------------------------
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----------------------------------------------------------------------S---------
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---------------------------SSS--------------------------------------------------
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----------------------------------------------------------S---------------------
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--------------------------------------------------------------------SSSSSSSSSSSS
SSSSSSSSSSS---------------------------------------------------------------------
--------------------------------------------------------S-----------------------
--------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S---------S----
SS----------S-------S-------------------S---------S----------S------------------
---------------S------SS---------------------------------------------S----------
-----------------S----------S---------------------------S----SS-----------------
------S----------------------------------------------------S--------------------
------S----------S--------S-----------------------------------------------------
-S------------------------------------------S-------------------S---------------
-------------S-----------------------------S
>forward_21
-ACTTGACTGCACGGACGAAT-----------------------------------------------------------
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>reverse_1899
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----------------------------------------------------------AAAAGTAAATCGAGAGTGCGCG
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