Multiple sequence alignment - TraesCS3D01G135000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G135000 chr3D 100.000 2366 0 0 1 2366 94034701 94037066 0.000000e+00 4370.0
1 TraesCS3D01G135000 chr3D 86.513 1001 112 19 678 1668 94051520 94052507 0.000000e+00 1079.0
2 TraesCS3D01G135000 chr3D 95.935 123 5 0 1904 2026 596702677 596702555 1.430000e-47 200.0
3 TraesCS3D01G135000 chr3D 100.000 36 0 0 1 36 529905219 529905184 1.520000e-07 67.6
4 TraesCS3D01G135000 chr3D 97.368 38 1 0 1 38 508308942 508308905 5.460000e-07 65.8
5 TraesCS3D01G135000 chr3D 97.222 36 1 0 1 36 18659383 18659418 7.060000e-06 62.1
6 TraesCS3D01G135000 chr3A 93.718 1369 67 6 548 1903 547329267 547330629 0.000000e+00 2034.0
7 TraesCS3D01G135000 chr3A 91.051 257 19 3 1 255 547327403 547327657 6.260000e-91 344.0
8 TraesCS3D01G135000 chr3A 92.718 206 8 4 288 488 547327653 547327856 8.270000e-75 291.0
9 TraesCS3D01G135000 chr3B 90.175 1201 78 27 372 1544 144239867 144238679 0.000000e+00 1528.0
10 TraesCS3D01G135000 chr3B 87.328 726 69 7 805 1526 144115861 144115155 0.000000e+00 809.0
11 TraesCS3D01G135000 chr3B 92.308 39 3 0 1 39 785326966 785327004 3.290000e-04 56.5
12 TraesCS3D01G135000 chr7D 97.953 342 7 0 2025 2366 422312199 422312540 5.630000e-166 593.0
13 TraesCS3D01G135000 chr7D 97.368 342 7 2 2025 2366 276099123 276098784 4.380000e-162 580.0
14 TraesCS3D01G135000 chr7D 97.368 342 8 1 2025 2366 446404904 446404564 4.380000e-162 580.0
15 TraesCS3D01G135000 chr7D 100.000 32 0 0 8 39 118868064 118868095 2.540000e-05 60.2
16 TraesCS3D01G135000 chr6D 97.953 342 7 0 2025 2366 275686538 275686879 5.630000e-166 593.0
17 TraesCS3D01G135000 chr2D 97.661 342 7 1 2025 2366 564011530 564011190 9.420000e-164 586.0
18 TraesCS3D01G135000 chr2D 87.692 65 4 4 1 64 128486571 128486510 3.260000e-09 73.1
19 TraesCS3D01G135000 chr5D 97.368 342 9 0 2025 2366 307385191 307384850 1.220000e-162 582.0
20 TraesCS3D01G135000 chr5D 97.093 344 8 2 2025 2366 495269714 495269371 1.580000e-161 579.0
21 TraesCS3D01G135000 chr4D 97.368 342 8 1 2025 2366 27440627 27440287 4.380000e-162 580.0
22 TraesCS3D01G135000 chr1D 97.093 344 8 1 2025 2366 471427958 471427615 1.580000e-161 579.0
23 TraesCS3D01G135000 chr1D 100.000 34 0 0 5 38 491705353 491705320 1.960000e-06 63.9
24 TraesCS3D01G135000 chr1D 100.000 29 0 0 10 38 255485526 255485554 1.000000e-03 54.7
25 TraesCS3D01G135000 chr1B 97.541 122 3 0 1905 2026 76735765 76735644 2.380000e-50 209.0
26 TraesCS3D01G135000 chr7B 96.721 122 4 0 1905 2026 742265293 742265172 1.110000e-48 204.0
27 TraesCS3D01G135000 chr7B 96.721 122 3 1 1905 2026 706113453 706113573 3.990000e-48 202.0
28 TraesCS3D01G135000 chr7B 95.935 123 5 0 1904 2026 651073295 651073173 1.430000e-47 200.0
29 TraesCS3D01G135000 chr7B 96.875 32 0 1 9 39 41318238 41318207 4.000000e-03 52.8
30 TraesCS3D01G135000 chr7A 96.721 122 4 0 1905 2026 635668392 635668271 1.110000e-48 204.0
31 TraesCS3D01G135000 chr6B 95.935 123 5 0 1904 2026 261462847 261462725 1.430000e-47 200.0
32 TraesCS3D01G135000 chr6B 95.902 122 5 0 1905 2026 78264803 78264924 5.160000e-47 198.0
33 TraesCS3D01G135000 chr6B 100.000 32 0 0 1 32 508829840 508829871 2.540000e-05 60.2
34 TraesCS3D01G135000 chr5A 95.276 127 3 3 1901 2026 678701648 678701524 5.160000e-47 198.0
35 TraesCS3D01G135000 chr6A 91.892 74 6 0 1751 1824 211876857 211876930 1.160000e-18 104.0
36 TraesCS3D01G135000 chr5B 92.857 42 3 0 1 42 42742484 42742443 7.060000e-06 62.1
37 TraesCS3D01G135000 chr5B 97.059 34 1 0 6 39 148495718 148495685 9.130000e-05 58.4
38 TraesCS3D01G135000 chr5B 100.000 30 0 0 7 36 493132823 493132794 3.290000e-04 56.5
39 TraesCS3D01G135000 chr4B 100.000 31 0 0 8 38 75198545 75198515 9.130000e-05 58.4
40 TraesCS3D01G135000 chr2B 100.000 30 0 0 10 39 741467551 741467522 3.290000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G135000 chr3D 94034701 94037066 2365 False 4370.000000 4370 100.000000 1 2366 1 chr3D.!!$F2 2365
1 TraesCS3D01G135000 chr3D 94051520 94052507 987 False 1079.000000 1079 86.513000 678 1668 1 chr3D.!!$F3 990
2 TraesCS3D01G135000 chr3A 547327403 547330629 3226 False 889.666667 2034 92.495667 1 1903 3 chr3A.!!$F1 1902
3 TraesCS3D01G135000 chr3B 144238679 144239867 1188 True 1528.000000 1528 90.175000 372 1544 1 chr3B.!!$R2 1172
4 TraesCS3D01G135000 chr3B 144115155 144115861 706 True 809.000000 809 87.328000 805 1526 1 chr3B.!!$R1 721

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
227 229 0.481128 ATTTGGGGTCCTGTTTCGGT 59.519 50.0 0.0 0.0 0.0 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1978 3428 0.031857 TCGCCGAACCTCGTTAACAA 59.968 50.0 6.39 0.0 38.4 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.359975 CAGGCGGTTTGAGGGTCC 60.360 66.667 0.00 0.00 0.00 4.46
87 88 3.520691 ACATAGCTTCCATGGATGCAT 57.479 42.857 39.12 29.68 44.51 3.96
131 133 7.524717 AAACAAAAGTAGTCTATGTGGCAAT 57.475 32.000 0.00 0.00 0.00 3.56
140 142 7.928706 AGTAGTCTATGTGGCAATTTGATAGTC 59.071 37.037 0.00 0.00 0.00 2.59
192 194 8.764287 ACTTGCTAAATTTCTTTCAAATTTCGG 58.236 29.630 8.04 5.26 39.63 4.30
213 215 7.418840 TCGGTGAAATTTCATTTGAATTTGG 57.581 32.000 23.05 4.85 39.73 3.28
223 225 4.657969 TCATTTGAATTTGGGGTCCTGTTT 59.342 37.500 0.00 0.00 0.00 2.83
227 229 0.481128 ATTTGGGGTCCTGTTTCGGT 59.519 50.000 0.00 0.00 0.00 4.69
247 249 5.460419 TCGGTGTGAAATTTCCAAAATTTCG 59.540 36.000 22.83 15.71 45.06 3.46
249 251 5.755861 GGTGTGAAATTTCCAAAATTTCGGA 59.244 36.000 22.83 14.24 45.06 4.55
250 252 6.426633 GGTGTGAAATTTCCAAAATTTCGGAT 59.573 34.615 22.83 0.00 45.06 4.18
251 253 7.600752 GGTGTGAAATTTCCAAAATTTCGGATA 59.399 33.333 22.83 0.00 45.06 2.59
260 262 8.715191 TTCCAAAATTTCGGATATTTCAATGG 57.285 30.769 0.00 12.89 0.00 3.16
261 263 7.271511 TCCAAAATTTCGGATATTTCAATGGG 58.728 34.615 16.34 10.15 0.00 4.00
262 264 7.047271 CCAAAATTTCGGATATTTCAATGGGT 58.953 34.615 11.92 0.00 0.00 4.51
263 265 7.224557 CCAAAATTTCGGATATTTCAATGGGTC 59.775 37.037 11.92 0.00 0.00 4.46
264 266 6.405278 AATTTCGGATATTTCAATGGGTCC 57.595 37.500 0.00 0.00 0.00 4.46
265 267 3.502123 TCGGATATTTCAATGGGTCCC 57.498 47.619 0.00 0.00 0.00 4.46
266 268 2.780592 TCGGATATTTCAATGGGTCCCA 59.219 45.455 14.64 14.64 38.19 4.37
267 269 3.203263 TCGGATATTTCAATGGGTCCCAA 59.797 43.478 16.55 0.00 36.95 4.12
268 270 3.957497 CGGATATTTCAATGGGTCCCAAA 59.043 43.478 16.55 4.76 36.95 3.28
269 271 4.404073 CGGATATTTCAATGGGTCCCAAAA 59.596 41.667 16.55 11.76 36.95 2.44
270 272 5.070313 CGGATATTTCAATGGGTCCCAAAAT 59.930 40.000 16.55 18.00 36.95 1.82
271 273 6.407979 CGGATATTTCAATGGGTCCCAAAATT 60.408 38.462 19.66 6.85 36.95 1.82
272 274 7.345691 GGATATTTCAATGGGTCCCAAAATTT 58.654 34.615 19.66 13.97 36.95 1.82
273 275 8.490311 GGATATTTCAATGGGTCCCAAAATTTA 58.510 33.333 19.66 7.59 36.95 1.40
276 278 5.590530 TCAATGGGTCCCAAAATTTATCG 57.409 39.130 16.55 0.00 36.95 2.92
277 279 4.119136 CAATGGGTCCCAAAATTTATCGC 58.881 43.478 16.55 0.00 36.95 4.58
278 280 2.808919 TGGGTCCCAAAATTTATCGCA 58.191 42.857 8.65 0.00 0.00 5.10
279 281 3.370104 TGGGTCCCAAAATTTATCGCAT 58.630 40.909 8.65 0.00 0.00 4.73
280 282 4.537751 TGGGTCCCAAAATTTATCGCATA 58.462 39.130 8.65 0.00 0.00 3.14
281 283 4.956700 TGGGTCCCAAAATTTATCGCATAA 59.043 37.500 8.65 0.00 0.00 1.90
282 284 5.163499 TGGGTCCCAAAATTTATCGCATAAC 60.163 40.000 8.65 0.00 0.00 1.89
283 285 4.973663 GGTCCCAAAATTTATCGCATAACG 59.026 41.667 0.00 0.00 45.62 3.18
306 308 5.221048 CGAAATATTTTTCCTTGGCTCCGAT 60.221 40.000 1.43 0.00 38.40 4.18
357 362 1.971167 GCTGTTCGGGATGGTGCAA 60.971 57.895 0.00 0.00 0.00 4.08
508 1899 2.110011 TGGGAGAAAAAGAAGAAGGGGG 59.890 50.000 0.00 0.00 0.00 5.40
532 1923 1.889829 TGCACCGTGGGGATTAAAAAG 59.110 47.619 0.00 0.00 36.97 2.27
537 1928 2.425668 CCGTGGGGATTAAAAAGCGAAT 59.574 45.455 0.00 0.00 34.06 3.34
581 1972 3.470709 AGAACAATGGCACGATCCTATG 58.529 45.455 0.00 0.00 0.00 2.23
585 2006 3.062763 CAATGGCACGATCCTATGTCTC 58.937 50.000 0.00 0.00 0.00 3.36
593 2014 5.163703 GCACGATCCTATGTCTCTCGAATAT 60.164 44.000 0.00 0.00 33.74 1.28
692 2117 1.002868 GTGCAGTGTGGGCTGAGAT 60.003 57.895 0.00 0.00 38.70 2.75
704 2129 0.851495 GCTGAGATCGAATCACGCTG 59.149 55.000 13.30 2.78 42.26 5.18
801 2231 1.684248 GCTAACCGTCTCCTACTCCCA 60.684 57.143 0.00 0.00 0.00 4.37
851 2283 2.002018 AACCCAAACGCCCTCTCCAA 62.002 55.000 0.00 0.00 0.00 3.53
1240 2674 1.409427 GGCGTCAGCTTCTAGTACCAT 59.591 52.381 0.00 0.00 44.37 3.55
1333 2767 5.654650 AGGAATCCGGAGATATACTCATCAC 59.345 44.000 11.34 0.00 46.54 3.06
1401 2837 0.951558 ACCGAAGACAATGTTGGCAC 59.048 50.000 0.86 0.00 39.18 5.01
1412 2848 1.661197 GTTGGCACATGCAACCGTG 60.661 57.895 6.15 9.29 44.36 4.94
1429 2865 3.247442 CCGTGCGTGTACTTTCATTAGA 58.753 45.455 0.00 0.00 0.00 2.10
1620 3062 3.622166 TGAATGCTTCTGCTCATCTGA 57.378 42.857 0.00 0.00 40.48 3.27
1648 3090 2.675844 CTCTACATCTATCTCTCCCGCG 59.324 54.545 0.00 0.00 0.00 6.46
1670 3112 1.373059 GCTAGATAGTGGCCCAGGC 59.627 63.158 0.00 0.00 41.06 4.85
1739 3189 5.814783 CATTGAGAGTCGAAAATGGAATCC 58.185 41.667 0.00 0.00 0.00 3.01
1747 3197 0.334676 AAAATGGAATCCCGGCTCCA 59.665 50.000 17.50 17.50 45.65 3.86
1762 3212 2.158827 GGCTCCATCCTTCTTCTTCTCC 60.159 54.545 0.00 0.00 0.00 3.71
1766 3216 0.461961 ATCCTTCTTCTTCTCCGGCG 59.538 55.000 0.00 0.00 0.00 6.46
1795 3245 3.770040 CGGCGGAGGGATGTGACA 61.770 66.667 0.00 0.00 0.00 3.58
1800 3250 1.680522 CGGAGGGATGTGACAGGAGG 61.681 65.000 0.00 0.00 0.00 4.30
1812 3262 2.522193 AGGAGGCCGGCTAGCTAC 60.522 66.667 28.56 16.26 0.00 3.58
1849 3299 8.100791 ACTTGTAGATTGTCTGTTGGCTTTATA 58.899 33.333 0.00 0.00 0.00 0.98
1906 3356 2.737180 CTGAGTGGTCAGCCGTGT 59.263 61.111 0.00 0.00 43.89 4.49
1907 3357 1.069765 CTGAGTGGTCAGCCGTGTT 59.930 57.895 0.00 0.00 43.89 3.32
1908 3358 0.317160 CTGAGTGGTCAGCCGTGTTA 59.683 55.000 0.00 0.00 43.89 2.41
1909 3359 0.317160 TGAGTGGTCAGCCGTGTTAG 59.683 55.000 0.00 0.00 37.67 2.34
1910 3360 0.601558 GAGTGGTCAGCCGTGTTAGA 59.398 55.000 0.00 0.00 37.67 2.10
1911 3361 1.000506 GAGTGGTCAGCCGTGTTAGAA 59.999 52.381 0.00 0.00 37.67 2.10
1912 3362 1.623811 AGTGGTCAGCCGTGTTAGAAT 59.376 47.619 0.00 0.00 37.67 2.40
1913 3363 2.829720 AGTGGTCAGCCGTGTTAGAATA 59.170 45.455 0.00 0.00 37.67 1.75
1914 3364 3.259876 AGTGGTCAGCCGTGTTAGAATAA 59.740 43.478 0.00 0.00 37.67 1.40
1915 3365 3.998341 GTGGTCAGCCGTGTTAGAATAAA 59.002 43.478 0.00 0.00 37.67 1.40
1916 3366 4.634443 GTGGTCAGCCGTGTTAGAATAAAT 59.366 41.667 0.00 0.00 37.67 1.40
1917 3367 5.123344 GTGGTCAGCCGTGTTAGAATAAATT 59.877 40.000 0.00 0.00 37.67 1.82
1918 3368 5.353123 TGGTCAGCCGTGTTAGAATAAATTC 59.647 40.000 0.00 0.00 37.67 2.17
1919 3369 5.490213 GTCAGCCGTGTTAGAATAAATTCG 58.510 41.667 0.00 0.00 41.56 3.34
1920 3370 5.290158 GTCAGCCGTGTTAGAATAAATTCGA 59.710 40.000 0.00 0.00 41.56 3.71
1921 3371 5.518847 TCAGCCGTGTTAGAATAAATTCGAG 59.481 40.000 0.00 0.00 41.56 4.04
1922 3372 4.809426 AGCCGTGTTAGAATAAATTCGAGG 59.191 41.667 0.00 0.00 41.56 4.63
1923 3373 4.569564 GCCGTGTTAGAATAAATTCGAGGT 59.430 41.667 0.00 0.00 41.56 3.85
1924 3374 5.750067 GCCGTGTTAGAATAAATTCGAGGTA 59.250 40.000 0.00 0.00 41.56 3.08
1925 3375 6.292008 GCCGTGTTAGAATAAATTCGAGGTAC 60.292 42.308 0.00 0.00 41.56 3.34
1926 3376 6.075205 CCGTGTTAGAATAAATTCGAGGTACG 60.075 42.308 11.72 11.72 41.56 3.67
1927 3377 6.559158 CGTGTTAGAATAAATTCGAGGTACGC 60.559 42.308 0.00 0.00 41.56 4.42
1936 3386 2.330745 GAGGTACGCGGTCGATCC 59.669 66.667 12.47 3.19 39.41 3.36
1937 3387 2.438975 AGGTACGCGGTCGATCCA 60.439 61.111 12.47 0.00 39.41 3.41
1938 3388 2.278401 GGTACGCGGTCGATCCAC 60.278 66.667 12.47 0.00 39.41 4.02
1939 3389 2.278401 GTACGCGGTCGATCCACC 60.278 66.667 12.47 0.00 39.41 4.61
1951 3401 3.557220 TCCACCGAGGAACAAGCA 58.443 55.556 0.00 0.00 45.65 3.91
1952 3402 1.833606 TCCACCGAGGAACAAGCAA 59.166 52.632 0.00 0.00 45.65 3.91
1953 3403 0.400213 TCCACCGAGGAACAAGCAAT 59.600 50.000 0.00 0.00 45.65 3.56
1954 3404 0.804989 CCACCGAGGAACAAGCAATC 59.195 55.000 0.00 0.00 41.22 2.67
1955 3405 1.522668 CACCGAGGAACAAGCAATCA 58.477 50.000 0.00 0.00 0.00 2.57
1956 3406 1.197721 CACCGAGGAACAAGCAATCAC 59.802 52.381 0.00 0.00 0.00 3.06
1957 3407 1.202758 ACCGAGGAACAAGCAATCACA 60.203 47.619 0.00 0.00 0.00 3.58
1958 3408 1.466167 CCGAGGAACAAGCAATCACAG 59.534 52.381 0.00 0.00 0.00 3.66
1959 3409 2.416747 CGAGGAACAAGCAATCACAGA 58.583 47.619 0.00 0.00 0.00 3.41
1960 3410 2.158449 CGAGGAACAAGCAATCACAGAC 59.842 50.000 0.00 0.00 0.00 3.51
1961 3411 3.141398 GAGGAACAAGCAATCACAGACA 58.859 45.455 0.00 0.00 0.00 3.41
1962 3412 3.554934 AGGAACAAGCAATCACAGACAA 58.445 40.909 0.00 0.00 0.00 3.18
1963 3413 4.147321 AGGAACAAGCAATCACAGACAAT 58.853 39.130 0.00 0.00 0.00 2.71
1964 3414 4.022589 AGGAACAAGCAATCACAGACAATG 60.023 41.667 0.00 0.00 0.00 2.82
1965 3415 4.022935 GGAACAAGCAATCACAGACAATGA 60.023 41.667 0.00 0.00 0.00 2.57
1966 3416 4.494350 ACAAGCAATCACAGACAATGAC 57.506 40.909 0.00 0.00 0.00 3.06
1967 3417 3.058708 ACAAGCAATCACAGACAATGACG 60.059 43.478 0.00 0.00 0.00 4.35
1968 3418 3.044235 AGCAATCACAGACAATGACGA 57.956 42.857 0.00 0.00 0.00 4.20
1969 3419 2.738846 AGCAATCACAGACAATGACGAC 59.261 45.455 0.00 0.00 0.00 4.34
1970 3420 2.480037 GCAATCACAGACAATGACGACA 59.520 45.455 0.00 0.00 0.00 4.35
1971 3421 3.665323 GCAATCACAGACAATGACGACAC 60.665 47.826 0.00 0.00 0.00 3.67
1972 3422 2.148916 TCACAGACAATGACGACACC 57.851 50.000 0.00 0.00 0.00 4.16
1973 3423 0.784178 CACAGACAATGACGACACCG 59.216 55.000 0.00 0.00 42.50 4.94
1974 3424 0.671796 ACAGACAATGACGACACCGA 59.328 50.000 0.00 0.00 39.50 4.69
1975 3425 1.335964 ACAGACAATGACGACACCGAG 60.336 52.381 0.00 0.00 39.50 4.63
1976 3426 1.068541 CAGACAATGACGACACCGAGA 60.069 52.381 0.00 0.00 39.50 4.04
1977 3427 1.819288 AGACAATGACGACACCGAGAT 59.181 47.619 0.00 0.00 39.50 2.75
1978 3428 2.231478 AGACAATGACGACACCGAGATT 59.769 45.455 0.00 0.00 39.50 2.40
1979 3429 2.993899 GACAATGACGACACCGAGATTT 59.006 45.455 0.00 0.00 39.50 2.17
1980 3430 2.736721 ACAATGACGACACCGAGATTTG 59.263 45.455 0.00 0.00 39.50 2.32
1981 3431 2.736721 CAATGACGACACCGAGATTTGT 59.263 45.455 0.00 0.00 39.50 2.83
1982 3432 2.519377 TGACGACACCGAGATTTGTT 57.481 45.000 0.00 0.00 39.50 2.83
1983 3433 3.646611 TGACGACACCGAGATTTGTTA 57.353 42.857 0.00 0.00 39.50 2.41
1984 3434 3.979948 TGACGACACCGAGATTTGTTAA 58.020 40.909 0.00 0.00 39.50 2.01
1985 3435 3.737266 TGACGACACCGAGATTTGTTAAC 59.263 43.478 0.00 0.00 39.50 2.01
1986 3436 2.727798 ACGACACCGAGATTTGTTAACG 59.272 45.455 0.26 0.00 39.50 3.18
1987 3437 2.981805 CGACACCGAGATTTGTTAACGA 59.018 45.455 0.26 0.00 38.22 3.85
1988 3438 3.059044 CGACACCGAGATTTGTTAACGAG 59.941 47.826 0.26 0.00 38.22 4.18
1989 3439 3.323243 ACACCGAGATTTGTTAACGAGG 58.677 45.455 0.26 0.00 0.00 4.63
1990 3440 3.243975 ACACCGAGATTTGTTAACGAGGT 60.244 43.478 0.26 0.00 0.00 3.85
1991 3441 3.744426 CACCGAGATTTGTTAACGAGGTT 59.256 43.478 0.26 0.00 0.00 3.50
1992 3442 3.992427 ACCGAGATTTGTTAACGAGGTTC 59.008 43.478 0.26 0.00 0.00 3.62
1993 3443 3.060363 CCGAGATTTGTTAACGAGGTTCG 59.940 47.826 13.63 13.63 46.93 3.95
1994 3444 3.060363 CGAGATTTGTTAACGAGGTTCGG 59.940 47.826 13.11 2.22 45.59 4.30
1995 3445 2.740447 AGATTTGTTAACGAGGTTCGGC 59.260 45.455 0.26 0.00 45.59 5.54
1996 3446 0.860533 TTTGTTAACGAGGTTCGGCG 59.139 50.000 0.00 0.00 45.59 6.46
1997 3447 0.031857 TTGTTAACGAGGTTCGGCGA 59.968 50.000 4.99 4.99 45.59 5.54
1998 3448 0.031857 TGTTAACGAGGTTCGGCGAA 59.968 50.000 19.83 19.83 45.59 4.70
1999 3449 0.436150 GTTAACGAGGTTCGGCGAAC 59.564 55.000 37.30 37.30 45.59 3.95
2000 3450 0.314935 TTAACGAGGTTCGGCGAACT 59.685 50.000 40.71 30.00 45.59 3.01
2001 3451 0.109597 TAACGAGGTTCGGCGAACTC 60.110 55.000 40.71 33.19 45.59 3.01
2002 3452 2.874780 CGAGGTTCGGCGAACTCG 60.875 66.667 40.71 37.70 41.70 4.18
2013 3463 2.478989 CGAACTCGCCTACTCCTCA 58.521 57.895 0.00 0.00 0.00 3.86
2014 3464 0.378962 CGAACTCGCCTACTCCTCAG 59.621 60.000 0.00 0.00 0.00 3.35
2015 3465 0.741915 GAACTCGCCTACTCCTCAGG 59.258 60.000 0.00 0.00 36.16 3.86
2016 3466 0.684805 AACTCGCCTACTCCTCAGGG 60.685 60.000 0.00 0.00 33.44 4.45
2017 3467 2.442272 TCGCCTACTCCTCAGGGC 60.442 66.667 0.00 0.00 41.02 5.19
2018 3468 2.759973 CGCCTACTCCTCAGGGCA 60.760 66.667 0.00 0.00 44.27 5.36
2019 3469 2.359169 CGCCTACTCCTCAGGGCAA 61.359 63.158 0.00 0.00 44.27 4.52
2020 3470 1.690219 CGCCTACTCCTCAGGGCAAT 61.690 60.000 0.00 0.00 44.27 3.56
2021 3471 0.179034 GCCTACTCCTCAGGGCAATG 60.179 60.000 0.00 0.00 43.59 2.82
2022 3472 1.500474 CCTACTCCTCAGGGCAATGA 58.500 55.000 0.00 0.00 0.00 2.57
2023 3473 1.139853 CCTACTCCTCAGGGCAATGAC 59.860 57.143 0.00 0.00 0.00 3.06
2024 3474 2.114616 CTACTCCTCAGGGCAATGACT 58.885 52.381 0.00 0.00 0.00 3.41
2025 3475 2.254152 ACTCCTCAGGGCAATGACTA 57.746 50.000 0.00 0.00 0.00 2.59
2026 3476 2.769209 ACTCCTCAGGGCAATGACTAT 58.231 47.619 0.00 0.00 0.00 2.12
2027 3477 3.118531 ACTCCTCAGGGCAATGACTATT 58.881 45.455 0.00 0.00 0.00 1.73
2028 3478 3.525199 ACTCCTCAGGGCAATGACTATTT 59.475 43.478 0.00 0.00 0.00 1.40
2029 3479 3.881688 CTCCTCAGGGCAATGACTATTTG 59.118 47.826 0.00 0.00 0.00 2.32
2030 3480 3.266772 TCCTCAGGGCAATGACTATTTGT 59.733 43.478 0.00 0.00 0.00 2.83
2031 3481 3.379372 CCTCAGGGCAATGACTATTTGTG 59.621 47.826 0.00 0.00 0.00 3.33
2032 3482 3.355378 TCAGGGCAATGACTATTTGTGG 58.645 45.455 0.00 0.00 0.00 4.17
2033 3483 2.102578 AGGGCAATGACTATTTGTGGC 58.897 47.619 0.00 0.00 0.00 5.01
2034 3484 1.824230 GGGCAATGACTATTTGTGGCA 59.176 47.619 0.00 0.00 0.00 4.92
2035 3485 2.233431 GGGCAATGACTATTTGTGGCAA 59.767 45.455 0.00 0.00 0.00 4.52
2036 3486 3.306641 GGGCAATGACTATTTGTGGCAAA 60.307 43.478 0.00 0.00 0.00 3.68
2037 3487 3.928375 GGCAATGACTATTTGTGGCAAAG 59.072 43.478 0.00 0.00 0.00 2.77
2038 3488 3.368843 GCAATGACTATTTGTGGCAAAGC 59.631 43.478 0.00 0.00 0.00 3.51
2051 3501 2.939460 GCAAAGCCACCGTTCATAAT 57.061 45.000 0.00 0.00 0.00 1.28
2052 3502 3.230743 GCAAAGCCACCGTTCATAATT 57.769 42.857 0.00 0.00 0.00 1.40
2053 3503 3.179048 GCAAAGCCACCGTTCATAATTC 58.821 45.455 0.00 0.00 0.00 2.17
2054 3504 3.119495 GCAAAGCCACCGTTCATAATTCT 60.119 43.478 0.00 0.00 0.00 2.40
2055 3505 4.618227 GCAAAGCCACCGTTCATAATTCTT 60.618 41.667 0.00 0.00 0.00 2.52
2056 3506 5.469479 CAAAGCCACCGTTCATAATTCTTT 58.531 37.500 0.00 0.00 0.00 2.52
2057 3507 4.965119 AGCCACCGTTCATAATTCTTTC 57.035 40.909 0.00 0.00 0.00 2.62
2058 3508 4.331968 AGCCACCGTTCATAATTCTTTCA 58.668 39.130 0.00 0.00 0.00 2.69
2059 3509 4.949856 AGCCACCGTTCATAATTCTTTCAT 59.050 37.500 0.00 0.00 0.00 2.57
2060 3510 6.119536 AGCCACCGTTCATAATTCTTTCATA 58.880 36.000 0.00 0.00 0.00 2.15
2061 3511 6.038271 AGCCACCGTTCATAATTCTTTCATAC 59.962 38.462 0.00 0.00 0.00 2.39
2062 3512 6.183360 GCCACCGTTCATAATTCTTTCATACA 60.183 38.462 0.00 0.00 0.00 2.29
2063 3513 7.468631 GCCACCGTTCATAATTCTTTCATACAT 60.469 37.037 0.00 0.00 0.00 2.29
2064 3514 7.857389 CCACCGTTCATAATTCTTTCATACATG 59.143 37.037 0.00 0.00 0.00 3.21
2065 3515 8.397906 CACCGTTCATAATTCTTTCATACATGT 58.602 33.333 2.69 2.69 0.00 3.21
2066 3516 8.612619 ACCGTTCATAATTCTTTCATACATGTC 58.387 33.333 0.00 0.00 0.00 3.06
2067 3517 8.611757 CCGTTCATAATTCTTTCATACATGTCA 58.388 33.333 0.00 0.00 0.00 3.58
2068 3518 9.425893 CGTTCATAATTCTTTCATACATGTCAC 57.574 33.333 0.00 0.00 0.00 3.67
2074 3524 8.853077 AATTCTTTCATACATGTCACTCTTGA 57.147 30.769 0.00 0.00 0.00 3.02
2075 3525 9.458727 AATTCTTTCATACATGTCACTCTTGAT 57.541 29.630 0.00 0.00 33.11 2.57
2076 3526 8.853077 TTCTTTCATACATGTCACTCTTGATT 57.147 30.769 0.00 0.00 33.11 2.57
2077 3527 8.484641 TCTTTCATACATGTCACTCTTGATTC 57.515 34.615 0.00 0.00 33.11 2.52
2078 3528 8.096414 TCTTTCATACATGTCACTCTTGATTCA 58.904 33.333 0.00 0.00 33.11 2.57
2079 3529 8.797350 TTTCATACATGTCACTCTTGATTCAT 57.203 30.769 0.00 0.00 33.11 2.57
2080 3530 8.797350 TTCATACATGTCACTCTTGATTCATT 57.203 30.769 0.00 0.00 33.11 2.57
2081 3531 8.205131 TCATACATGTCACTCTTGATTCATTG 57.795 34.615 0.00 0.00 33.11 2.82
2082 3532 5.306532 ACATGTCACTCTTGATTCATTGC 57.693 39.130 0.00 0.00 33.11 3.56
2083 3533 4.763279 ACATGTCACTCTTGATTCATTGCA 59.237 37.500 0.00 0.00 33.11 4.08
2084 3534 5.417894 ACATGTCACTCTTGATTCATTGCAT 59.582 36.000 0.00 0.00 33.11 3.96
2085 3535 6.600427 ACATGTCACTCTTGATTCATTGCATA 59.400 34.615 0.00 0.00 33.11 3.14
2086 3536 7.284716 ACATGTCACTCTTGATTCATTGCATAT 59.715 33.333 0.00 0.00 33.11 1.78
2087 3537 7.255491 TGTCACTCTTGATTCATTGCATATC 57.745 36.000 0.00 0.00 33.11 1.63
2088 3538 6.261603 TGTCACTCTTGATTCATTGCATATCC 59.738 38.462 0.00 0.00 33.11 2.59
2089 3539 5.766670 TCACTCTTGATTCATTGCATATCCC 59.233 40.000 0.00 0.00 0.00 3.85
2090 3540 4.758674 ACTCTTGATTCATTGCATATCCCG 59.241 41.667 0.00 0.00 0.00 5.14
2091 3541 4.074259 TCTTGATTCATTGCATATCCCGG 58.926 43.478 0.00 0.00 0.00 5.73
2092 3542 3.507162 TGATTCATTGCATATCCCGGT 57.493 42.857 0.00 0.00 0.00 5.28
2093 3543 4.632327 TGATTCATTGCATATCCCGGTA 57.368 40.909 0.00 0.00 0.00 4.02
2094 3544 4.323417 TGATTCATTGCATATCCCGGTAC 58.677 43.478 0.00 0.00 0.00 3.34
2095 3545 3.847671 TTCATTGCATATCCCGGTACA 57.152 42.857 0.00 0.00 0.00 2.90
2096 3546 3.120321 TCATTGCATATCCCGGTACAC 57.880 47.619 0.00 0.00 0.00 2.90
2097 3547 2.151202 CATTGCATATCCCGGTACACC 58.849 52.381 0.00 0.00 0.00 4.16
2118 3568 2.160822 CCGGAGGCATTCACATAGAG 57.839 55.000 0.00 0.00 46.14 2.43
2119 3569 1.414181 CCGGAGGCATTCACATAGAGT 59.586 52.381 0.00 0.00 46.14 3.24
2120 3570 2.546795 CCGGAGGCATTCACATAGAGTC 60.547 54.545 0.00 0.00 46.14 3.36
2121 3571 2.101415 CGGAGGCATTCACATAGAGTCA 59.899 50.000 0.00 0.00 0.00 3.41
2122 3572 3.244009 CGGAGGCATTCACATAGAGTCAT 60.244 47.826 0.00 0.00 0.00 3.06
2123 3573 4.021981 CGGAGGCATTCACATAGAGTCATA 60.022 45.833 0.00 0.00 0.00 2.15
2124 3574 5.337089 CGGAGGCATTCACATAGAGTCATAT 60.337 44.000 0.00 0.00 0.00 1.78
2125 3575 6.471146 GGAGGCATTCACATAGAGTCATATT 58.529 40.000 0.00 0.00 0.00 1.28
2126 3576 6.939163 GGAGGCATTCACATAGAGTCATATTT 59.061 38.462 0.00 0.00 0.00 1.40
2127 3577 7.446625 GGAGGCATTCACATAGAGTCATATTTT 59.553 37.037 0.00 0.00 0.00 1.82
2128 3578 8.162878 AGGCATTCACATAGAGTCATATTTTG 57.837 34.615 0.00 0.00 0.00 2.44
2129 3579 7.776969 AGGCATTCACATAGAGTCATATTTTGT 59.223 33.333 0.00 0.00 0.00 2.83
2130 3580 8.408601 GGCATTCACATAGAGTCATATTTTGTT 58.591 33.333 0.00 0.00 0.00 2.83
2131 3581 9.443283 GCATTCACATAGAGTCATATTTTGTTC 57.557 33.333 0.00 0.00 0.00 3.18
2159 3609 9.950680 AAGTATTGAGTTGTAATTGTTGAGTTG 57.049 29.630 0.00 0.00 0.00 3.16
2160 3610 9.120538 AGTATTGAGTTGTAATTGTTGAGTTGT 57.879 29.630 0.00 0.00 0.00 3.32
2163 3613 9.950680 ATTGAGTTGTAATTGTTGAGTTGTAAG 57.049 29.630 0.00 0.00 0.00 2.34
2164 3614 8.500753 TGAGTTGTAATTGTTGAGTTGTAAGT 57.499 30.769 0.00 0.00 0.00 2.24
2165 3615 9.602568 TGAGTTGTAATTGTTGAGTTGTAAGTA 57.397 29.630 0.00 0.00 0.00 2.24
2202 3652 8.909923 TGATGATCATCATTTTTAGAGCATTGT 58.090 29.630 30.27 0.00 42.42 2.71
2203 3653 9.395707 GATGATCATCATTTTTAGAGCATTGTC 57.604 33.333 27.30 0.00 37.20 3.18
2204 3654 7.709947 TGATCATCATTTTTAGAGCATTGTCC 58.290 34.615 0.00 0.00 0.00 4.02
2205 3655 6.455360 TCATCATTTTTAGAGCATTGTCCC 57.545 37.500 0.00 0.00 0.00 4.46
2206 3656 5.951148 TCATCATTTTTAGAGCATTGTCCCA 59.049 36.000 0.00 0.00 0.00 4.37
2207 3657 6.436847 TCATCATTTTTAGAGCATTGTCCCAA 59.563 34.615 0.00 0.00 0.00 4.12
2208 3658 6.271488 TCATTTTTAGAGCATTGTCCCAAG 57.729 37.500 0.00 0.00 0.00 3.61
2209 3659 5.774690 TCATTTTTAGAGCATTGTCCCAAGT 59.225 36.000 0.00 0.00 0.00 3.16
2210 3660 5.452078 TTTTTAGAGCATTGTCCCAAGTG 57.548 39.130 0.00 0.00 0.00 3.16
2211 3661 4.365514 TTTAGAGCATTGTCCCAAGTGA 57.634 40.909 0.00 0.00 0.00 3.41
2212 3662 2.486472 AGAGCATTGTCCCAAGTGAG 57.514 50.000 0.00 0.00 0.00 3.51
2213 3663 1.004044 AGAGCATTGTCCCAAGTGAGG 59.996 52.381 0.00 0.00 0.00 3.86
2214 3664 1.003580 GAGCATTGTCCCAAGTGAGGA 59.996 52.381 0.00 0.00 0.00 3.71
2215 3665 1.425066 AGCATTGTCCCAAGTGAGGAA 59.575 47.619 0.00 0.00 34.43 3.36
2216 3666 2.158475 AGCATTGTCCCAAGTGAGGAAA 60.158 45.455 0.00 0.00 34.43 3.13
2217 3667 2.229784 GCATTGTCCCAAGTGAGGAAAG 59.770 50.000 0.00 0.00 34.43 2.62
2218 3668 2.656947 TTGTCCCAAGTGAGGAAAGG 57.343 50.000 0.00 0.00 34.43 3.11
2219 3669 1.814429 TGTCCCAAGTGAGGAAAGGA 58.186 50.000 0.00 0.00 34.43 3.36
2220 3670 2.348472 TGTCCCAAGTGAGGAAAGGAT 58.652 47.619 0.00 0.00 34.43 3.24
2221 3671 2.040278 TGTCCCAAGTGAGGAAAGGATG 59.960 50.000 0.00 0.00 34.43 3.51
2222 3672 1.635487 TCCCAAGTGAGGAAAGGATGG 59.365 52.381 0.00 0.00 0.00 3.51
2223 3673 1.355720 CCCAAGTGAGGAAAGGATGGT 59.644 52.381 0.00 0.00 0.00 3.55
2224 3674 2.440409 CCAAGTGAGGAAAGGATGGTG 58.560 52.381 0.00 0.00 0.00 4.17
2225 3675 2.440409 CAAGTGAGGAAAGGATGGTGG 58.560 52.381 0.00 0.00 0.00 4.61
2226 3676 2.040278 CAAGTGAGGAAAGGATGGTGGA 59.960 50.000 0.00 0.00 0.00 4.02
2227 3677 1.912043 AGTGAGGAAAGGATGGTGGAG 59.088 52.381 0.00 0.00 0.00 3.86
2228 3678 1.909302 GTGAGGAAAGGATGGTGGAGA 59.091 52.381 0.00 0.00 0.00 3.71
2229 3679 1.909302 TGAGGAAAGGATGGTGGAGAC 59.091 52.381 0.00 0.00 0.00 3.36
2230 3680 2.192263 GAGGAAAGGATGGTGGAGACT 58.808 52.381 0.00 0.00 0.00 3.24
2231 3681 3.245984 TGAGGAAAGGATGGTGGAGACTA 60.246 47.826 0.00 0.00 0.00 2.59
2232 3682 3.970640 GAGGAAAGGATGGTGGAGACTAT 59.029 47.826 0.00 0.00 0.00 2.12
2233 3683 3.713764 AGGAAAGGATGGTGGAGACTATG 59.286 47.826 0.00 0.00 0.00 2.23
2234 3684 3.711704 GGAAAGGATGGTGGAGACTATGA 59.288 47.826 0.00 0.00 0.00 2.15
2235 3685 4.349342 GGAAAGGATGGTGGAGACTATGAT 59.651 45.833 0.00 0.00 0.00 2.45
2236 3686 5.163152 GGAAAGGATGGTGGAGACTATGATT 60.163 44.000 0.00 0.00 0.00 2.57
2237 3687 5.559148 AAGGATGGTGGAGACTATGATTC 57.441 43.478 0.00 0.00 0.00 2.52
2238 3688 3.906846 AGGATGGTGGAGACTATGATTCC 59.093 47.826 0.00 0.00 0.00 3.01
2239 3689 3.306364 GGATGGTGGAGACTATGATTCCG 60.306 52.174 0.00 0.00 33.60 4.30
2240 3690 1.412710 TGGTGGAGACTATGATTCCGC 59.587 52.381 0.00 0.00 40.05 5.54
2241 3691 2.156343 GTGGAGACTATGATTCCGCC 57.844 55.000 0.00 0.00 35.88 6.13
2242 3692 1.412710 GTGGAGACTATGATTCCGCCA 59.587 52.381 0.00 0.00 35.88 5.69
2243 3693 1.412710 TGGAGACTATGATTCCGCCAC 59.587 52.381 0.00 0.00 33.60 5.01
2244 3694 1.412710 GGAGACTATGATTCCGCCACA 59.587 52.381 0.00 0.00 0.00 4.17
2245 3695 2.158957 GGAGACTATGATTCCGCCACAA 60.159 50.000 0.00 0.00 0.00 3.33
2246 3696 3.126831 GAGACTATGATTCCGCCACAAG 58.873 50.000 0.00 0.00 0.00 3.16
2247 3697 2.501723 AGACTATGATTCCGCCACAAGT 59.498 45.455 0.00 0.00 0.00 3.16
2248 3698 2.866762 GACTATGATTCCGCCACAAGTC 59.133 50.000 0.00 0.00 0.00 3.01
2249 3699 1.860950 CTATGATTCCGCCACAAGTCG 59.139 52.381 0.00 0.00 0.00 4.18
2250 3700 0.744414 ATGATTCCGCCACAAGTCGG 60.744 55.000 0.00 0.00 46.52 4.79
2251 3701 2.046314 ATTCCGCCACAAGTCGGG 60.046 61.111 0.64 0.00 45.31 5.14
2252 3702 2.515996 GATTCCGCCACAAGTCGGGA 62.516 60.000 0.64 0.00 45.31 5.14
2253 3703 1.910580 ATTCCGCCACAAGTCGGGAT 61.911 55.000 0.64 0.00 45.31 3.85
2254 3704 2.796483 TTCCGCCACAAGTCGGGATG 62.796 60.000 0.64 0.00 45.31 3.51
2255 3705 2.264480 CGCCACAAGTCGGGATGA 59.736 61.111 0.00 0.00 0.00 2.92
2256 3706 1.811266 CGCCACAAGTCGGGATGAG 60.811 63.158 0.00 0.00 0.00 2.90
2257 3707 1.596934 GCCACAAGTCGGGATGAGA 59.403 57.895 0.00 0.00 0.00 3.27
2258 3708 0.741221 GCCACAAGTCGGGATGAGAC 60.741 60.000 0.00 0.00 38.81 3.36
2262 3712 4.244326 AGTCGGGATGAGACTCCG 57.756 61.111 0.00 0.00 44.87 4.63
2263 3713 1.454111 AGTCGGGATGAGACTCCGG 60.454 63.158 0.00 0.00 44.87 5.14
2264 3714 1.453379 GTCGGGATGAGACTCCGGA 60.453 63.158 2.93 2.93 43.54 5.14
2265 3715 1.453379 TCGGGATGAGACTCCGGAC 60.453 63.158 0.00 0.00 43.54 4.79
2266 3716 2.835705 CGGGATGAGACTCCGGACG 61.836 68.421 0.00 0.00 40.07 4.79
2267 3717 1.453379 GGGATGAGACTCCGGACGA 60.453 63.158 0.00 0.00 36.05 4.20
2268 3718 1.035932 GGGATGAGACTCCGGACGAA 61.036 60.000 0.00 0.00 36.05 3.85
2269 3719 0.815734 GGATGAGACTCCGGACGAAA 59.184 55.000 0.00 0.00 0.00 3.46
2270 3720 1.203994 GGATGAGACTCCGGACGAAAA 59.796 52.381 0.00 0.00 0.00 2.29
2271 3721 2.353406 GGATGAGACTCCGGACGAAAAA 60.353 50.000 0.00 0.00 0.00 1.94
2326 3776 9.868160 AAAAATAAGAGAAAAAGAGAGAAGGGA 57.132 29.630 0.00 0.00 0.00 4.20
2327 3777 8.856153 AAATAAGAGAAAAAGAGAGAAGGGAC 57.144 34.615 0.00 0.00 0.00 4.46
2328 3778 5.896073 AAGAGAAAAAGAGAGAAGGGACA 57.104 39.130 0.00 0.00 0.00 4.02
2329 3779 5.896073 AGAGAAAAAGAGAGAAGGGACAA 57.104 39.130 0.00 0.00 0.00 3.18
2330 3780 6.446909 AGAGAAAAAGAGAGAAGGGACAAT 57.553 37.500 0.00 0.00 0.00 2.71
2331 3781 6.237154 AGAGAAAAAGAGAGAAGGGACAATG 58.763 40.000 0.00 0.00 0.00 2.82
2332 3782 5.946486 AGAAAAAGAGAGAAGGGACAATGT 58.054 37.500 0.00 0.00 0.00 2.71
2333 3783 6.368805 AGAAAAAGAGAGAAGGGACAATGTT 58.631 36.000 0.00 0.00 0.00 2.71
2334 3784 7.518188 AGAAAAAGAGAGAAGGGACAATGTTA 58.482 34.615 0.00 0.00 0.00 2.41
2335 3785 7.445707 AGAAAAAGAGAGAAGGGACAATGTTAC 59.554 37.037 0.00 0.00 0.00 2.50
2336 3786 6.441088 AAAGAGAGAAGGGACAATGTTACT 57.559 37.500 0.00 0.00 0.00 2.24
2337 3787 7.554959 AAAGAGAGAAGGGACAATGTTACTA 57.445 36.000 0.00 0.00 0.00 1.82
2338 3788 7.741554 AAGAGAGAAGGGACAATGTTACTAT 57.258 36.000 0.00 0.00 0.00 2.12
2339 3789 7.354751 AGAGAGAAGGGACAATGTTACTATC 57.645 40.000 0.00 0.00 0.00 2.08
2340 3790 6.325286 AGAGAGAAGGGACAATGTTACTATCC 59.675 42.308 0.00 0.00 0.00 2.59
2341 3791 6.206042 AGAGAAGGGACAATGTTACTATCCT 58.794 40.000 0.00 0.00 0.00 3.24
2342 3792 6.674419 AGAGAAGGGACAATGTTACTATCCTT 59.326 38.462 0.00 0.00 36.24 3.36
2343 3793 7.182930 AGAGAAGGGACAATGTTACTATCCTTT 59.817 37.037 0.00 0.00 34.00 3.11
2344 3794 7.699878 AGAAGGGACAATGTTACTATCCTTTT 58.300 34.615 0.00 0.00 34.00 2.27
2345 3795 8.832735 AGAAGGGACAATGTTACTATCCTTTTA 58.167 33.333 0.00 0.00 34.00 1.52
2346 3796 8.803397 AAGGGACAATGTTACTATCCTTTTAC 57.197 34.615 0.00 0.00 30.08 2.01
2347 3797 7.344134 AGGGACAATGTTACTATCCTTTTACC 58.656 38.462 0.00 0.00 0.00 2.85
2348 3798 7.037153 AGGGACAATGTTACTATCCTTTTACCA 60.037 37.037 0.00 0.00 0.00 3.25
2349 3799 7.066645 GGGACAATGTTACTATCCTTTTACCAC 59.933 40.741 0.00 0.00 0.00 4.16
2350 3800 7.608761 GGACAATGTTACTATCCTTTTACCACA 59.391 37.037 0.00 0.00 0.00 4.17
2351 3801 8.331730 ACAATGTTACTATCCTTTTACCACAC 57.668 34.615 0.00 0.00 0.00 3.82
2352 3802 8.161425 ACAATGTTACTATCCTTTTACCACACT 58.839 33.333 0.00 0.00 0.00 3.55
2353 3803 9.010029 CAATGTTACTATCCTTTTACCACACTT 57.990 33.333 0.00 0.00 0.00 3.16
2354 3804 7.972832 TGTTACTATCCTTTTACCACACTTG 57.027 36.000 0.00 0.00 0.00 3.16
2355 3805 7.511268 TGTTACTATCCTTTTACCACACTTGT 58.489 34.615 0.00 0.00 0.00 3.16
2356 3806 7.442969 TGTTACTATCCTTTTACCACACTTGTG 59.557 37.037 2.13 2.13 45.23 3.33
2357 3807 5.937111 ACTATCCTTTTACCACACTTGTGT 58.063 37.500 8.52 0.00 44.21 3.72
2358 3808 6.362248 ACTATCCTTTTACCACACTTGTGTT 58.638 36.000 8.52 0.00 44.21 3.32
2359 3809 6.831868 ACTATCCTTTTACCACACTTGTGTTT 59.168 34.615 8.52 0.00 44.21 2.83
2360 3810 5.570234 TCCTTTTACCACACTTGTGTTTC 57.430 39.130 8.52 0.00 44.21 2.78
2361 3811 5.010933 TCCTTTTACCACACTTGTGTTTCA 58.989 37.500 8.52 0.00 44.21 2.69
2362 3812 5.477291 TCCTTTTACCACACTTGTGTTTCAA 59.523 36.000 8.52 0.00 44.21 2.69
2363 3813 6.015350 TCCTTTTACCACACTTGTGTTTCAAA 60.015 34.615 8.52 2.38 44.21 2.69
2364 3814 6.310224 CCTTTTACCACACTTGTGTTTCAAAG 59.690 38.462 8.52 9.59 44.21 2.77
2365 3815 5.968528 TTACCACACTTGTGTTTCAAAGT 57.031 34.783 8.52 0.44 44.21 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 2.281208 CCAACGCGGACCCTCAAA 60.281 61.111 12.47 0.00 36.56 2.69
19 20 1.153449 TTAGGGCATCTCCAACGCG 60.153 57.895 3.53 3.53 36.21 6.01
44 45 5.673337 TGTTGCACAGTTCTTAGATTCAC 57.327 39.130 0.00 0.00 0.00 3.18
114 115 7.796054 ACTATCAAATTGCCACATAGACTACT 58.204 34.615 6.47 0.00 0.00 2.57
115 116 7.710907 TGACTATCAAATTGCCACATAGACTAC 59.289 37.037 6.47 0.00 0.00 2.73
116 117 7.791029 TGACTATCAAATTGCCACATAGACTA 58.209 34.615 6.47 0.00 0.00 2.59
170 172 8.293114 TCACCGAAATTTGAAAGAAATTTAGC 57.707 30.769 0.00 0.00 39.23 3.09
192 194 7.308529 GGACCCCAAATTCAAATGAAATTTCAC 60.309 37.037 22.71 4.62 44.81 3.18
213 215 0.179040 TTCACACCGAAACAGGACCC 60.179 55.000 0.00 0.00 34.73 4.46
223 225 5.460419 CGAAATTTTGGAAATTTCACACCGA 59.540 36.000 25.94 0.11 43.32 4.69
227 229 9.717942 AATATCCGAAATTTTGGAAATTTCACA 57.282 25.926 27.37 17.25 43.75 3.58
237 239 7.047271 ACCCATTGAAATATCCGAAATTTTGG 58.953 34.615 17.37 17.37 0.00 3.28
247 249 5.948742 TTTTGGGACCCATTGAAATATCC 57.051 39.130 15.83 0.00 31.53 2.59
250 252 8.200792 CGATAAATTTTGGGACCCATTGAAATA 58.799 33.333 15.83 4.22 31.53 1.40
251 253 7.047271 CGATAAATTTTGGGACCCATTGAAAT 58.953 34.615 15.83 14.56 31.53 2.17
255 257 4.119136 GCGATAAATTTTGGGACCCATTG 58.881 43.478 15.83 2.20 31.53 2.82
256 258 3.772025 TGCGATAAATTTTGGGACCCATT 59.228 39.130 15.83 8.27 31.53 3.16
257 259 3.370104 TGCGATAAATTTTGGGACCCAT 58.630 40.909 15.83 0.53 31.53 4.00
258 260 2.808919 TGCGATAAATTTTGGGACCCA 58.191 42.857 9.95 9.95 0.00 4.51
259 261 5.286438 GTTATGCGATAAATTTTGGGACCC 58.714 41.667 2.45 2.45 0.00 4.46
260 262 4.973663 CGTTATGCGATAAATTTTGGGACC 59.026 41.667 0.00 0.00 44.77 4.46
261 263 5.812652 TCGTTATGCGATAAATTTTGGGAC 58.187 37.500 0.00 0.00 45.68 4.46
274 276 6.970043 CCAAGGAAAAATATTTCGTTATGCGA 59.030 34.615 0.10 0.00 46.38 5.10
275 277 6.291585 GCCAAGGAAAAATATTTCGTTATGCG 60.292 38.462 0.10 0.00 46.38 4.73
276 278 6.756542 AGCCAAGGAAAAATATTTCGTTATGC 59.243 34.615 0.10 15.25 46.38 3.14
277 279 7.435192 GGAGCCAAGGAAAAATATTTCGTTATG 59.565 37.037 0.10 0.00 46.38 1.90
278 280 7.489160 GGAGCCAAGGAAAAATATTTCGTTAT 58.511 34.615 0.10 0.73 46.38 1.89
279 281 6.403855 CGGAGCCAAGGAAAAATATTTCGTTA 60.404 38.462 0.10 0.00 46.38 3.18
281 283 4.142469 CGGAGCCAAGGAAAAATATTTCGT 60.142 41.667 0.10 0.00 44.83 3.85
282 284 4.095782 TCGGAGCCAAGGAAAAATATTTCG 59.904 41.667 0.10 0.00 44.83 3.46
283 285 5.576447 TCGGAGCCAAGGAAAAATATTTC 57.424 39.130 0.10 0.00 43.46 2.17
284 286 5.656416 TCATCGGAGCCAAGGAAAAATATTT 59.344 36.000 0.00 0.00 0.00 1.40
285 287 5.200483 TCATCGGAGCCAAGGAAAAATATT 58.800 37.500 0.00 0.00 0.00 1.28
286 288 4.792068 TCATCGGAGCCAAGGAAAAATAT 58.208 39.130 0.00 0.00 0.00 1.28
287 289 4.229304 TCATCGGAGCCAAGGAAAAATA 57.771 40.909 0.00 0.00 0.00 1.40
288 290 3.085952 TCATCGGAGCCAAGGAAAAAT 57.914 42.857 0.00 0.00 0.00 1.82
289 291 2.577606 TCATCGGAGCCAAGGAAAAA 57.422 45.000 0.00 0.00 0.00 1.94
290 292 2.436417 CTTCATCGGAGCCAAGGAAAA 58.564 47.619 0.00 0.00 0.00 2.29
291 293 1.950484 GCTTCATCGGAGCCAAGGAAA 60.950 52.381 0.00 0.00 0.00 3.13
292 294 0.392998 GCTTCATCGGAGCCAAGGAA 60.393 55.000 0.00 0.00 0.00 3.36
293 295 1.221840 GCTTCATCGGAGCCAAGGA 59.778 57.895 0.00 0.00 0.00 3.36
294 296 2.176273 CGCTTCATCGGAGCCAAGG 61.176 63.158 0.00 0.00 0.00 3.61
295 297 3.403277 CGCTTCATCGGAGCCAAG 58.597 61.111 0.00 0.00 0.00 3.61
306 308 1.024271 GCCAATATGCTTCCGCTTCA 58.976 50.000 0.00 0.00 36.97 3.02
336 338 1.450312 CACCATCCCGAACAGCCTC 60.450 63.158 0.00 0.00 0.00 4.70
337 339 2.671070 CACCATCCCGAACAGCCT 59.329 61.111 0.00 0.00 0.00 4.58
522 1913 5.065218 TCTCAGCTCATTCGCTTTTTAATCC 59.935 40.000 0.00 0.00 38.41 3.01
532 1923 1.285578 GGAAGTCTCAGCTCATTCGC 58.714 55.000 0.00 0.00 0.00 4.70
537 1928 1.649321 ACCATGGAAGTCTCAGCTCA 58.351 50.000 21.47 0.00 0.00 4.26
581 1972 7.824704 ATGCATGTATTGATATTCGAGAGAC 57.175 36.000 0.00 0.00 41.84 3.36
585 2006 7.062255 ACGTGTATGCATGTATTGATATTCGAG 59.938 37.037 10.16 0.00 42.54 4.04
593 2014 7.034685 AGTAGTACGTGTATGCATGTATTGA 57.965 36.000 17.35 5.19 45.49 2.57
692 2117 1.271379 ACTTGTACCAGCGTGATTCGA 59.729 47.619 0.00 0.00 42.86 3.71
704 2129 4.251268 GGAGTTGTCCATGTACTTGTACC 58.749 47.826 7.86 0.00 43.31 3.34
744 2174 0.462047 GATTCAGGGGCGATCAACGT 60.462 55.000 0.00 0.00 44.60 3.99
745 2175 1.160329 GGATTCAGGGGCGATCAACG 61.160 60.000 0.00 0.00 45.66 4.10
746 2176 0.181350 AGGATTCAGGGGCGATCAAC 59.819 55.000 0.00 0.00 0.00 3.18
747 2177 1.416401 GTAGGATTCAGGGGCGATCAA 59.584 52.381 0.00 0.00 0.00 2.57
754 2184 0.669077 CGACGAGTAGGATTCAGGGG 59.331 60.000 0.00 0.00 0.00 4.79
801 2231 8.552034 GTTATATAGAGAAGAAAGTTGCGCAAT 58.448 33.333 27.79 10.80 0.00 3.56
851 2283 2.769095 GGCTCCTGTGGTTCTCTAATCT 59.231 50.000 0.00 0.00 0.00 2.40
1240 2674 1.960417 TGTCTTTGTGTCGCAATGGA 58.040 45.000 10.99 5.51 36.89 3.41
1544 2983 6.628185 TCACCGAGAAGACTCTATTTAAACC 58.372 40.000 0.00 0.00 40.65 3.27
1606 3048 3.316029 AGACGAGATCAGATGAGCAGAAG 59.684 47.826 0.42 0.00 31.88 2.85
1620 3062 6.351881 GGGAGAGATAGATGTAGAGACGAGAT 60.352 46.154 0.00 0.00 0.00 2.75
1648 3090 0.830648 TGGGCCACTATCTAGCACAC 59.169 55.000 0.00 0.00 34.31 3.82
1670 3112 2.416701 GGAGAGCTTTCGAGAGAGTTGG 60.417 54.545 7.23 0.00 43.69 3.77
1739 3189 0.543749 AAGAAGAAGGATGGAGCCGG 59.456 55.000 0.00 0.00 0.00 6.13
1747 3197 0.461961 CGCCGGAGAAGAAGAAGGAT 59.538 55.000 5.05 0.00 0.00 3.24
1795 3245 2.522193 GTAGCTAGCCGGCCTCCT 60.522 66.667 26.15 18.75 0.00 3.69
1800 3250 3.946558 AGTATATACAGTAGCTAGCCGGC 59.053 47.826 21.89 21.89 0.00 6.13
1832 3282 4.759693 CACCAGTATAAAGCCAACAGACAA 59.240 41.667 0.00 0.00 0.00 3.18
1849 3299 1.165270 GCATAAAGCCGAACACCAGT 58.835 50.000 0.00 0.00 37.23 4.00
1903 3353 6.559158 CGCGTACCTCGAATTTATTCTAACAC 60.559 42.308 0.00 0.00 42.86 3.32
1904 3354 5.456497 CGCGTACCTCGAATTTATTCTAACA 59.544 40.000 0.00 0.00 42.86 2.41
1905 3355 5.108103 CCGCGTACCTCGAATTTATTCTAAC 60.108 44.000 4.92 0.00 42.86 2.34
1906 3356 4.977963 CCGCGTACCTCGAATTTATTCTAA 59.022 41.667 4.92 0.00 42.86 2.10
1907 3357 4.036734 ACCGCGTACCTCGAATTTATTCTA 59.963 41.667 4.92 0.00 42.86 2.10
1908 3358 3.181483 ACCGCGTACCTCGAATTTATTCT 60.181 43.478 4.92 0.00 42.86 2.40
1909 3359 3.118542 ACCGCGTACCTCGAATTTATTC 58.881 45.455 4.92 0.00 42.86 1.75
1910 3360 3.118542 GACCGCGTACCTCGAATTTATT 58.881 45.455 4.92 0.00 42.86 1.40
1911 3361 2.735823 GACCGCGTACCTCGAATTTAT 58.264 47.619 4.92 0.00 42.86 1.40
1912 3362 1.531677 CGACCGCGTACCTCGAATTTA 60.532 52.381 4.92 0.00 42.86 1.40
1913 3363 0.799534 CGACCGCGTACCTCGAATTT 60.800 55.000 4.92 0.00 42.86 1.82
1914 3364 1.226491 CGACCGCGTACCTCGAATT 60.226 57.895 4.92 0.00 42.86 2.17
1915 3365 1.442526 ATCGACCGCGTACCTCGAAT 61.443 55.000 16.04 5.98 39.71 3.34
1916 3366 2.040213 GATCGACCGCGTACCTCGAA 62.040 60.000 16.04 4.36 39.71 3.71
1917 3367 2.512286 ATCGACCGCGTACCTCGA 60.512 61.111 14.91 14.91 42.86 4.04
1918 3368 2.052414 GATCGACCGCGTACCTCG 60.052 66.667 4.92 5.87 43.12 4.63
1919 3369 2.330745 GGATCGACCGCGTACCTC 59.669 66.667 4.92 0.00 38.98 3.85
1920 3370 2.438975 TGGATCGACCGCGTACCT 60.439 61.111 4.92 0.00 42.61 3.08
1921 3371 2.278401 GTGGATCGACCGCGTACC 60.278 66.667 4.92 0.00 42.61 3.34
1928 3378 1.141234 GTTCCTCGGTGGATCGACC 59.859 63.158 16.48 16.48 45.68 4.79
1929 3379 0.245539 TTGTTCCTCGGTGGATCGAC 59.754 55.000 0.00 0.00 45.68 4.20
1930 3380 0.530744 CTTGTTCCTCGGTGGATCGA 59.469 55.000 0.00 0.00 45.68 3.59
1931 3381 1.084370 GCTTGTTCCTCGGTGGATCG 61.084 60.000 0.00 0.00 45.68 3.69
1932 3382 0.036388 TGCTTGTTCCTCGGTGGATC 60.036 55.000 0.00 0.12 45.68 3.36
1933 3383 0.400213 TTGCTTGTTCCTCGGTGGAT 59.600 50.000 0.00 0.00 45.68 3.41
1934 3384 0.400213 ATTGCTTGTTCCTCGGTGGA 59.600 50.000 0.00 0.00 44.51 4.02
1935 3385 0.804989 GATTGCTTGTTCCTCGGTGG 59.195 55.000 0.00 0.00 37.10 4.61
1936 3386 1.197721 GTGATTGCTTGTTCCTCGGTG 59.802 52.381 0.00 0.00 0.00 4.94
1937 3387 1.202758 TGTGATTGCTTGTTCCTCGGT 60.203 47.619 0.00 0.00 0.00 4.69
1938 3388 1.466167 CTGTGATTGCTTGTTCCTCGG 59.534 52.381 0.00 0.00 0.00 4.63
1939 3389 2.158449 GTCTGTGATTGCTTGTTCCTCG 59.842 50.000 0.00 0.00 0.00 4.63
1940 3390 3.141398 TGTCTGTGATTGCTTGTTCCTC 58.859 45.455 0.00 0.00 0.00 3.71
1941 3391 3.213206 TGTCTGTGATTGCTTGTTCCT 57.787 42.857 0.00 0.00 0.00 3.36
1942 3392 3.988379 TTGTCTGTGATTGCTTGTTCC 57.012 42.857 0.00 0.00 0.00 3.62
1943 3393 4.913924 GTCATTGTCTGTGATTGCTTGTTC 59.086 41.667 0.00 0.00 0.00 3.18
1944 3394 4.555313 CGTCATTGTCTGTGATTGCTTGTT 60.555 41.667 0.00 0.00 0.00 2.83
1945 3395 3.058708 CGTCATTGTCTGTGATTGCTTGT 60.059 43.478 0.00 0.00 0.00 3.16
1946 3396 3.187022 TCGTCATTGTCTGTGATTGCTTG 59.813 43.478 0.00 0.00 0.00 4.01
1947 3397 3.187227 GTCGTCATTGTCTGTGATTGCTT 59.813 43.478 0.00 0.00 0.00 3.91
1948 3398 2.738846 GTCGTCATTGTCTGTGATTGCT 59.261 45.455 0.00 0.00 0.00 3.91
1949 3399 2.480037 TGTCGTCATTGTCTGTGATTGC 59.520 45.455 0.00 0.00 0.00 3.56
1950 3400 3.120546 GGTGTCGTCATTGTCTGTGATTG 60.121 47.826 0.00 0.00 0.00 2.67
1951 3401 3.067106 GGTGTCGTCATTGTCTGTGATT 58.933 45.455 0.00 0.00 0.00 2.57
1952 3402 2.688507 GGTGTCGTCATTGTCTGTGAT 58.311 47.619 0.00 0.00 0.00 3.06
1953 3403 1.601914 CGGTGTCGTCATTGTCTGTGA 60.602 52.381 0.00 0.00 0.00 3.58
1954 3404 0.784178 CGGTGTCGTCATTGTCTGTG 59.216 55.000 0.00 0.00 0.00 3.66
1955 3405 0.671796 TCGGTGTCGTCATTGTCTGT 59.328 50.000 0.00 0.00 37.69 3.41
1956 3406 1.068541 TCTCGGTGTCGTCATTGTCTG 60.069 52.381 0.00 0.00 37.69 3.51
1957 3407 1.244816 TCTCGGTGTCGTCATTGTCT 58.755 50.000 0.00 0.00 37.69 3.41
1958 3408 2.279582 ATCTCGGTGTCGTCATTGTC 57.720 50.000 0.00 0.00 37.69 3.18
1959 3409 2.736721 CAAATCTCGGTGTCGTCATTGT 59.263 45.455 0.00 0.00 37.69 2.71
1960 3410 2.736721 ACAAATCTCGGTGTCGTCATTG 59.263 45.455 0.00 0.00 37.69 2.82
1961 3411 3.040147 ACAAATCTCGGTGTCGTCATT 57.960 42.857 0.00 0.00 37.69 2.57
1962 3412 2.743636 ACAAATCTCGGTGTCGTCAT 57.256 45.000 0.00 0.00 37.69 3.06
1963 3413 2.519377 AACAAATCTCGGTGTCGTCA 57.481 45.000 0.00 0.00 37.69 4.35
1964 3414 3.181546 CGTTAACAAATCTCGGTGTCGTC 60.182 47.826 6.39 0.00 37.69 4.20
1965 3415 2.727798 CGTTAACAAATCTCGGTGTCGT 59.272 45.455 6.39 0.00 37.69 4.34
1966 3416 2.981805 TCGTTAACAAATCTCGGTGTCG 59.018 45.455 6.39 0.00 37.82 4.35
1967 3417 3.367025 CCTCGTTAACAAATCTCGGTGTC 59.633 47.826 6.39 0.00 0.00 3.67
1968 3418 3.243975 ACCTCGTTAACAAATCTCGGTGT 60.244 43.478 6.39 0.00 0.00 4.16
1969 3419 3.323243 ACCTCGTTAACAAATCTCGGTG 58.677 45.455 6.39 0.00 0.00 4.94
1970 3420 3.672767 ACCTCGTTAACAAATCTCGGT 57.327 42.857 6.39 0.00 0.00 4.69
1971 3421 3.060363 CGAACCTCGTTAACAAATCTCGG 59.940 47.826 6.39 0.00 34.72 4.63
1972 3422 3.060363 CCGAACCTCGTTAACAAATCTCG 59.940 47.826 6.39 7.74 38.40 4.04
1973 3423 3.181523 GCCGAACCTCGTTAACAAATCTC 60.182 47.826 6.39 0.00 38.40 2.75
1974 3424 2.740447 GCCGAACCTCGTTAACAAATCT 59.260 45.455 6.39 0.00 38.40 2.40
1975 3425 2.473376 CGCCGAACCTCGTTAACAAATC 60.473 50.000 6.39 0.00 38.40 2.17
1976 3426 1.461897 CGCCGAACCTCGTTAACAAAT 59.538 47.619 6.39 0.00 38.40 2.32
1977 3427 0.860533 CGCCGAACCTCGTTAACAAA 59.139 50.000 6.39 0.00 38.40 2.83
1978 3428 0.031857 TCGCCGAACCTCGTTAACAA 59.968 50.000 6.39 0.00 38.40 2.83
1979 3429 0.031857 TTCGCCGAACCTCGTTAACA 59.968 50.000 6.39 0.00 38.40 2.41
1980 3430 0.436150 GTTCGCCGAACCTCGTTAAC 59.564 55.000 18.88 0.00 38.40 2.01
1981 3431 0.314935 AGTTCGCCGAACCTCGTTAA 59.685 50.000 25.05 0.00 42.85 2.01
1982 3432 0.109597 GAGTTCGCCGAACCTCGTTA 60.110 55.000 25.05 0.00 42.85 3.18
1983 3433 1.372623 GAGTTCGCCGAACCTCGTT 60.373 57.895 25.05 7.38 42.85 3.85
1984 3434 2.257676 GAGTTCGCCGAACCTCGT 59.742 61.111 25.05 7.77 42.85 4.18
1985 3435 2.874780 CGAGTTCGCCGAACCTCG 60.875 66.667 25.05 25.22 42.85 4.63
1995 3445 0.378962 CTGAGGAGTAGGCGAGTTCG 59.621 60.000 0.00 0.00 43.27 3.95
1996 3446 0.741915 CCTGAGGAGTAGGCGAGTTC 59.258 60.000 0.00 0.00 0.00 3.01
1997 3447 0.684805 CCCTGAGGAGTAGGCGAGTT 60.685 60.000 0.00 0.00 33.86 3.01
1998 3448 1.076632 CCCTGAGGAGTAGGCGAGT 60.077 63.158 0.00 0.00 33.86 4.18
1999 3449 2.494530 GCCCTGAGGAGTAGGCGAG 61.495 68.421 0.00 0.00 35.30 5.03
2000 3450 2.442272 GCCCTGAGGAGTAGGCGA 60.442 66.667 0.00 0.00 35.30 5.54
2002 3452 0.179034 CATTGCCCTGAGGAGTAGGC 60.179 60.000 0.00 0.00 45.96 3.93
2003 3453 1.139853 GTCATTGCCCTGAGGAGTAGG 59.860 57.143 0.00 0.00 33.47 3.18
2004 3454 2.114616 AGTCATTGCCCTGAGGAGTAG 58.885 52.381 0.00 0.00 33.47 2.57
2005 3455 2.254152 AGTCATTGCCCTGAGGAGTA 57.746 50.000 0.00 0.00 33.47 2.59
2006 3456 2.254152 TAGTCATTGCCCTGAGGAGT 57.746 50.000 0.00 0.00 33.47 3.85
2007 3457 3.853355 AATAGTCATTGCCCTGAGGAG 57.147 47.619 0.00 0.00 33.47 3.69
2008 3458 3.266772 ACAAATAGTCATTGCCCTGAGGA 59.733 43.478 0.00 0.00 33.47 3.71
2009 3459 3.379372 CACAAATAGTCATTGCCCTGAGG 59.621 47.826 0.00 0.00 0.00 3.86
2010 3460 3.379372 CCACAAATAGTCATTGCCCTGAG 59.621 47.826 0.00 0.00 0.00 3.35
2011 3461 3.355378 CCACAAATAGTCATTGCCCTGA 58.645 45.455 0.00 0.00 0.00 3.86
2012 3462 2.159198 GCCACAAATAGTCATTGCCCTG 60.159 50.000 0.00 0.00 0.00 4.45
2013 3463 2.102578 GCCACAAATAGTCATTGCCCT 58.897 47.619 0.00 0.00 0.00 5.19
2014 3464 1.824230 TGCCACAAATAGTCATTGCCC 59.176 47.619 0.00 0.00 0.00 5.36
2015 3465 3.591196 TTGCCACAAATAGTCATTGCC 57.409 42.857 0.00 0.00 0.00 4.52
2016 3466 3.368843 GCTTTGCCACAAATAGTCATTGC 59.631 43.478 0.00 0.00 0.00 3.56
2032 3482 2.939460 ATTATGAACGGTGGCTTTGC 57.061 45.000 0.00 0.00 0.00 3.68
2033 3483 4.701956 AGAATTATGAACGGTGGCTTTG 57.298 40.909 0.00 0.00 0.00 2.77
2034 3484 5.242838 TGAAAGAATTATGAACGGTGGCTTT 59.757 36.000 0.00 0.00 0.00 3.51
2035 3485 4.764823 TGAAAGAATTATGAACGGTGGCTT 59.235 37.500 0.00 0.00 0.00 4.35
2036 3486 4.331968 TGAAAGAATTATGAACGGTGGCT 58.668 39.130 0.00 0.00 0.00 4.75
2037 3487 4.695217 TGAAAGAATTATGAACGGTGGC 57.305 40.909 0.00 0.00 0.00 5.01
2038 3488 7.315247 TGTATGAAAGAATTATGAACGGTGG 57.685 36.000 0.00 0.00 0.00 4.61
2039 3489 8.397906 ACATGTATGAAAGAATTATGAACGGTG 58.602 33.333 0.00 0.00 0.00 4.94
2040 3490 8.506168 ACATGTATGAAAGAATTATGAACGGT 57.494 30.769 0.00 0.00 0.00 4.83
2041 3491 8.611757 TGACATGTATGAAAGAATTATGAACGG 58.388 33.333 0.00 0.00 0.00 4.44
2042 3492 9.425893 GTGACATGTATGAAAGAATTATGAACG 57.574 33.333 0.00 0.00 0.00 3.95
2048 3498 9.942850 TCAAGAGTGACATGTATGAAAGAATTA 57.057 29.630 0.00 0.00 0.00 1.40
2049 3499 8.853077 TCAAGAGTGACATGTATGAAAGAATT 57.147 30.769 0.00 0.00 0.00 2.17
2050 3500 9.458727 AATCAAGAGTGACATGTATGAAAGAAT 57.541 29.630 0.00 0.00 36.31 2.40
2051 3501 8.853077 AATCAAGAGTGACATGTATGAAAGAA 57.147 30.769 0.00 0.00 36.31 2.52
2052 3502 8.096414 TGAATCAAGAGTGACATGTATGAAAGA 58.904 33.333 0.00 0.00 36.31 2.52
2053 3503 8.260270 TGAATCAAGAGTGACATGTATGAAAG 57.740 34.615 0.00 0.00 36.31 2.62
2054 3504 8.797350 ATGAATCAAGAGTGACATGTATGAAA 57.203 30.769 0.00 0.00 36.31 2.69
2055 3505 8.671028 CAATGAATCAAGAGTGACATGTATGAA 58.329 33.333 0.00 0.00 36.31 2.57
2056 3506 7.201670 GCAATGAATCAAGAGTGACATGTATGA 60.202 37.037 0.00 0.00 36.31 2.15
2057 3507 6.910972 GCAATGAATCAAGAGTGACATGTATG 59.089 38.462 0.00 0.00 36.31 2.39
2058 3508 6.600427 TGCAATGAATCAAGAGTGACATGTAT 59.400 34.615 0.00 0.00 36.31 2.29
2059 3509 5.939296 TGCAATGAATCAAGAGTGACATGTA 59.061 36.000 0.00 0.00 36.31 2.29
2060 3510 4.763279 TGCAATGAATCAAGAGTGACATGT 59.237 37.500 0.00 0.00 36.31 3.21
2061 3511 5.305139 TGCAATGAATCAAGAGTGACATG 57.695 39.130 0.00 0.00 36.31 3.21
2062 3512 7.040617 GGATATGCAATGAATCAAGAGTGACAT 60.041 37.037 0.00 0.00 36.31 3.06
2063 3513 6.261603 GGATATGCAATGAATCAAGAGTGACA 59.738 38.462 0.00 0.00 36.31 3.58
2064 3514 6.293845 GGGATATGCAATGAATCAAGAGTGAC 60.294 42.308 0.00 0.00 36.31 3.67
2065 3515 5.766670 GGGATATGCAATGAATCAAGAGTGA 59.233 40.000 0.00 0.00 38.41 3.41
2066 3516 5.334646 CGGGATATGCAATGAATCAAGAGTG 60.335 44.000 0.00 0.00 0.00 3.51
2067 3517 4.758674 CGGGATATGCAATGAATCAAGAGT 59.241 41.667 0.00 0.00 0.00 3.24
2068 3518 4.155462 CCGGGATATGCAATGAATCAAGAG 59.845 45.833 0.00 0.00 0.00 2.85
2069 3519 4.074259 CCGGGATATGCAATGAATCAAGA 58.926 43.478 0.00 0.00 0.00 3.02
2070 3520 3.822735 ACCGGGATATGCAATGAATCAAG 59.177 43.478 6.32 0.00 0.00 3.02
2071 3521 3.831323 ACCGGGATATGCAATGAATCAA 58.169 40.909 6.32 0.00 0.00 2.57
2072 3522 3.507162 ACCGGGATATGCAATGAATCA 57.493 42.857 6.32 0.00 0.00 2.57
2073 3523 4.154195 GTGTACCGGGATATGCAATGAATC 59.846 45.833 6.32 0.00 0.00 2.52
2074 3524 4.072131 GTGTACCGGGATATGCAATGAAT 58.928 43.478 6.32 0.00 0.00 2.57
2075 3525 3.472652 GTGTACCGGGATATGCAATGAA 58.527 45.455 6.32 0.00 0.00 2.57
2076 3526 2.224426 GGTGTACCGGGATATGCAATGA 60.224 50.000 6.32 0.00 0.00 2.57
2077 3527 2.151202 GGTGTACCGGGATATGCAATG 58.849 52.381 6.32 0.00 0.00 2.82
2078 3528 2.561478 GGTGTACCGGGATATGCAAT 57.439 50.000 6.32 0.00 0.00 3.56
2099 3549 1.414181 ACTCTATGTGAATGCCTCCGG 59.586 52.381 0.00 0.00 0.00 5.14
2100 3550 2.101415 TGACTCTATGTGAATGCCTCCG 59.899 50.000 0.00 0.00 0.00 4.63
2101 3551 3.827008 TGACTCTATGTGAATGCCTCC 57.173 47.619 0.00 0.00 0.00 4.30
2102 3552 7.976135 AAATATGACTCTATGTGAATGCCTC 57.024 36.000 0.00 0.00 0.00 4.70
2103 3553 7.776969 ACAAAATATGACTCTATGTGAATGCCT 59.223 33.333 0.00 0.00 0.00 4.75
2104 3554 7.934457 ACAAAATATGACTCTATGTGAATGCC 58.066 34.615 0.00 0.00 0.00 4.40
2105 3555 9.443283 GAACAAAATATGACTCTATGTGAATGC 57.557 33.333 0.00 0.00 0.00 3.56
2133 3583 9.950680 CAACTCAACAATTACAACTCAATACTT 57.049 29.630 0.00 0.00 0.00 2.24
2134 3584 9.120538 ACAACTCAACAATTACAACTCAATACT 57.879 29.630 0.00 0.00 0.00 2.12
2137 3587 9.950680 CTTACAACTCAACAATTACAACTCAAT 57.049 29.630 0.00 0.00 0.00 2.57
2138 3588 8.952278 ACTTACAACTCAACAATTACAACTCAA 58.048 29.630 0.00 0.00 0.00 3.02
2139 3589 8.500753 ACTTACAACTCAACAATTACAACTCA 57.499 30.769 0.00 0.00 0.00 3.41
2177 3627 9.395707 GACAATGCTCTAAAAATGATGATCATC 57.604 33.333 25.91 25.91 35.76 2.92
2178 3628 8.358148 GGACAATGCTCTAAAAATGATGATCAT 58.642 33.333 8.25 8.25 39.09 2.45
2179 3629 7.201848 GGGACAATGCTCTAAAAATGATGATCA 60.202 37.037 0.00 0.00 0.00 2.92
2180 3630 7.144000 GGGACAATGCTCTAAAAATGATGATC 58.856 38.462 0.00 0.00 0.00 2.92
2181 3631 6.608405 TGGGACAATGCTCTAAAAATGATGAT 59.392 34.615 0.00 0.00 31.92 2.45
2182 3632 5.951148 TGGGACAATGCTCTAAAAATGATGA 59.049 36.000 0.00 0.00 31.92 2.92
2183 3633 6.211587 TGGGACAATGCTCTAAAAATGATG 57.788 37.500 0.00 0.00 31.92 3.07
2200 3650 1.814429 TCCTTTCCTCACTTGGGACA 58.186 50.000 0.00 0.00 31.94 4.02
2201 3651 2.619074 CCATCCTTTCCTCACTTGGGAC 60.619 54.545 0.00 0.00 31.94 4.46
2202 3652 1.635487 CCATCCTTTCCTCACTTGGGA 59.365 52.381 0.00 0.00 0.00 4.37
2203 3653 1.355720 ACCATCCTTTCCTCACTTGGG 59.644 52.381 0.00 0.00 0.00 4.12
2204 3654 2.440409 CACCATCCTTTCCTCACTTGG 58.560 52.381 0.00 0.00 0.00 3.61
2205 3655 2.040278 TCCACCATCCTTTCCTCACTTG 59.960 50.000 0.00 0.00 0.00 3.16
2206 3656 2.307098 CTCCACCATCCTTTCCTCACTT 59.693 50.000 0.00 0.00 0.00 3.16
2207 3657 1.912043 CTCCACCATCCTTTCCTCACT 59.088 52.381 0.00 0.00 0.00 3.41
2208 3658 1.909302 TCTCCACCATCCTTTCCTCAC 59.091 52.381 0.00 0.00 0.00 3.51
2209 3659 1.909302 GTCTCCACCATCCTTTCCTCA 59.091 52.381 0.00 0.00 0.00 3.86
2210 3660 2.192263 AGTCTCCACCATCCTTTCCTC 58.808 52.381 0.00 0.00 0.00 3.71
2211 3661 2.350863 AGTCTCCACCATCCTTTCCT 57.649 50.000 0.00 0.00 0.00 3.36
2212 3662 3.711704 TCATAGTCTCCACCATCCTTTCC 59.288 47.826 0.00 0.00 0.00 3.13
2213 3663 5.559148 ATCATAGTCTCCACCATCCTTTC 57.441 43.478 0.00 0.00 0.00 2.62
2214 3664 5.163152 GGAATCATAGTCTCCACCATCCTTT 60.163 44.000 0.00 0.00 0.00 3.11
2215 3665 4.349342 GGAATCATAGTCTCCACCATCCTT 59.651 45.833 0.00 0.00 0.00 3.36
2216 3666 3.906846 GGAATCATAGTCTCCACCATCCT 59.093 47.826 0.00 0.00 0.00 3.24
2217 3667 3.306364 CGGAATCATAGTCTCCACCATCC 60.306 52.174 0.00 0.00 0.00 3.51
2218 3668 3.862642 GCGGAATCATAGTCTCCACCATC 60.863 52.174 0.00 0.00 0.00 3.51
2219 3669 2.037772 GCGGAATCATAGTCTCCACCAT 59.962 50.000 0.00 0.00 0.00 3.55
2220 3670 1.412710 GCGGAATCATAGTCTCCACCA 59.587 52.381 0.00 0.00 0.00 4.17
2221 3671 1.270358 GGCGGAATCATAGTCTCCACC 60.270 57.143 0.00 0.00 0.00 4.61
2222 3672 1.412710 TGGCGGAATCATAGTCTCCAC 59.587 52.381 0.00 0.00 0.00 4.02
2223 3673 1.412710 GTGGCGGAATCATAGTCTCCA 59.587 52.381 0.00 0.00 0.00 3.86
2224 3674 1.412710 TGTGGCGGAATCATAGTCTCC 59.587 52.381 0.00 0.00 0.00 3.71
2225 3675 2.890808 TGTGGCGGAATCATAGTCTC 57.109 50.000 0.00 0.00 0.00 3.36
2226 3676 2.501723 ACTTGTGGCGGAATCATAGTCT 59.498 45.455 0.00 0.00 0.00 3.24
2227 3677 2.866762 GACTTGTGGCGGAATCATAGTC 59.133 50.000 0.00 0.00 0.00 2.59
2228 3678 2.738643 CGACTTGTGGCGGAATCATAGT 60.739 50.000 0.00 0.00 0.00 2.12
2229 3679 1.860950 CGACTTGTGGCGGAATCATAG 59.139 52.381 0.00 0.00 0.00 2.23
2230 3680 1.934589 CGACTTGTGGCGGAATCATA 58.065 50.000 0.00 0.00 0.00 2.15
2231 3681 2.767536 CGACTTGTGGCGGAATCAT 58.232 52.632 0.00 0.00 0.00 2.45
2232 3682 4.277239 CGACTTGTGGCGGAATCA 57.723 55.556 0.00 0.00 0.00 2.57
2237 3687 2.819595 CATCCCGACTTGTGGCGG 60.820 66.667 2.95 2.95 46.80 6.13
2238 3688 1.811266 CTCATCCCGACTTGTGGCG 60.811 63.158 0.00 0.00 0.00 5.69
2239 3689 0.741221 GTCTCATCCCGACTTGTGGC 60.741 60.000 0.00 0.00 0.00 5.01
2240 3690 0.898320 AGTCTCATCCCGACTTGTGG 59.102 55.000 0.00 0.00 38.52 4.17
2241 3691 1.134965 GGAGTCTCATCCCGACTTGTG 60.135 57.143 1.47 0.00 41.53 3.33
2242 3692 1.187087 GGAGTCTCATCCCGACTTGT 58.813 55.000 1.47 0.00 41.53 3.16
2243 3693 0.101399 CGGAGTCTCATCCCGACTTG 59.899 60.000 1.47 0.00 45.58 3.16
2244 3694 1.038130 CCGGAGTCTCATCCCGACTT 61.038 60.000 0.00 0.00 45.58 3.01
2245 3695 1.454111 CCGGAGTCTCATCCCGACT 60.454 63.158 0.00 0.00 45.58 4.18
2246 3696 1.453379 TCCGGAGTCTCATCCCGAC 60.453 63.158 0.00 0.00 45.58 4.79
2247 3697 1.453379 GTCCGGAGTCTCATCCCGA 60.453 63.158 3.06 0.00 45.58 5.14
2248 3698 2.835705 CGTCCGGAGTCTCATCCCG 61.836 68.421 3.06 0.00 42.64 5.14
2249 3699 1.035932 TTCGTCCGGAGTCTCATCCC 61.036 60.000 3.06 0.00 35.82 3.85
2250 3700 0.815734 TTTCGTCCGGAGTCTCATCC 59.184 55.000 3.06 0.00 35.88 3.51
2251 3701 2.649331 TTTTCGTCCGGAGTCTCATC 57.351 50.000 3.06 0.00 0.00 2.92
2300 3750 9.868160 TCCCTTCTCTCTTTTTCTCTTATTTTT 57.132 29.630 0.00 0.00 0.00 1.94
2301 3751 9.290988 GTCCCTTCTCTCTTTTTCTCTTATTTT 57.709 33.333 0.00 0.00 0.00 1.82
2302 3752 8.440771 TGTCCCTTCTCTCTTTTTCTCTTATTT 58.559 33.333 0.00 0.00 0.00 1.40
2303 3753 7.978925 TGTCCCTTCTCTCTTTTTCTCTTATT 58.021 34.615 0.00 0.00 0.00 1.40
2304 3754 7.560796 TGTCCCTTCTCTCTTTTTCTCTTAT 57.439 36.000 0.00 0.00 0.00 1.73
2305 3755 6.996180 TGTCCCTTCTCTCTTTTTCTCTTA 57.004 37.500 0.00 0.00 0.00 2.10
2306 3756 5.896073 TGTCCCTTCTCTCTTTTTCTCTT 57.104 39.130 0.00 0.00 0.00 2.85
2307 3757 5.896073 TTGTCCCTTCTCTCTTTTTCTCT 57.104 39.130 0.00 0.00 0.00 3.10
2308 3758 6.000840 ACATTGTCCCTTCTCTCTTTTTCTC 58.999 40.000 0.00 0.00 0.00 2.87
2309 3759 5.946486 ACATTGTCCCTTCTCTCTTTTTCT 58.054 37.500 0.00 0.00 0.00 2.52
2310 3760 6.641169 AACATTGTCCCTTCTCTCTTTTTC 57.359 37.500 0.00 0.00 0.00 2.29
2311 3761 7.290813 AGTAACATTGTCCCTTCTCTCTTTTT 58.709 34.615 0.00 0.00 0.00 1.94
2312 3762 6.842676 AGTAACATTGTCCCTTCTCTCTTTT 58.157 36.000 0.00 0.00 0.00 2.27
2313 3763 6.441088 AGTAACATTGTCCCTTCTCTCTTT 57.559 37.500 0.00 0.00 0.00 2.52
2314 3764 7.147637 GGATAGTAACATTGTCCCTTCTCTCTT 60.148 40.741 0.00 0.00 0.00 2.85
2315 3765 6.325286 GGATAGTAACATTGTCCCTTCTCTCT 59.675 42.308 0.00 0.00 0.00 3.10
2316 3766 6.325286 AGGATAGTAACATTGTCCCTTCTCTC 59.675 42.308 0.00 0.00 0.00 3.20
2317 3767 6.206042 AGGATAGTAACATTGTCCCTTCTCT 58.794 40.000 0.00 0.00 0.00 3.10
2318 3768 6.487299 AGGATAGTAACATTGTCCCTTCTC 57.513 41.667 0.00 0.00 0.00 2.87
2319 3769 6.893020 AAGGATAGTAACATTGTCCCTTCT 57.107 37.500 0.00 0.00 0.00 2.85
2320 3770 7.939784 AAAAGGATAGTAACATTGTCCCTTC 57.060 36.000 0.00 0.00 32.18 3.46
2321 3771 7.832685 GGTAAAAGGATAGTAACATTGTCCCTT 59.167 37.037 0.00 0.00 34.56 3.95
2322 3772 7.037153 TGGTAAAAGGATAGTAACATTGTCCCT 60.037 37.037 0.00 0.00 0.00 4.20
2323 3773 7.066645 GTGGTAAAAGGATAGTAACATTGTCCC 59.933 40.741 0.00 0.00 0.00 4.46
2324 3774 7.608761 TGTGGTAAAAGGATAGTAACATTGTCC 59.391 37.037 0.00 0.00 0.00 4.02
2325 3775 8.448615 GTGTGGTAAAAGGATAGTAACATTGTC 58.551 37.037 0.00 0.00 0.00 3.18
2326 3776 8.161425 AGTGTGGTAAAAGGATAGTAACATTGT 58.839 33.333 0.00 0.00 0.00 2.71
2327 3777 8.561738 AGTGTGGTAAAAGGATAGTAACATTG 57.438 34.615 0.00 0.00 0.00 2.82
2328 3778 9.010029 CAAGTGTGGTAAAAGGATAGTAACATT 57.990 33.333 0.00 0.00 0.00 2.71
2329 3779 8.161425 ACAAGTGTGGTAAAAGGATAGTAACAT 58.839 33.333 0.00 0.00 0.00 2.71
2330 3780 7.442969 CACAAGTGTGGTAAAAGGATAGTAACA 59.557 37.037 3.39 0.00 42.10 2.41
2331 3781 7.803724 CACAAGTGTGGTAAAAGGATAGTAAC 58.196 38.462 3.39 0.00 42.10 2.50
2332 3782 7.972832 CACAAGTGTGGTAAAAGGATAGTAA 57.027 36.000 3.39 0.00 42.10 2.24
2333 3783 7.511268 AACACAAGTGTGGTAAAAGGATAGTA 58.489 34.615 15.52 0.00 45.48 1.82
2334 3784 6.362248 AACACAAGTGTGGTAAAAGGATAGT 58.638 36.000 15.52 0.00 45.48 2.12
2335 3785 6.877611 AACACAAGTGTGGTAAAAGGATAG 57.122 37.500 15.52 0.00 45.48 2.08
2336 3786 6.829298 TGAAACACAAGTGTGGTAAAAGGATA 59.171 34.615 15.52 0.00 46.84 2.59
2337 3787 5.654650 TGAAACACAAGTGTGGTAAAAGGAT 59.345 36.000 15.52 0.00 46.84 3.24
2338 3788 5.010933 TGAAACACAAGTGTGGTAAAAGGA 58.989 37.500 15.52 0.00 46.84 3.36
2339 3789 5.317733 TGAAACACAAGTGTGGTAAAAGG 57.682 39.130 15.52 0.00 46.84 3.11
2340 3790 6.866248 ACTTTGAAACACAAGTGTGGTAAAAG 59.134 34.615 23.18 23.18 46.84 2.27
2341 3791 6.750148 ACTTTGAAACACAAGTGTGGTAAAA 58.250 32.000 15.52 11.71 46.84 1.52
2342 3792 6.334102 ACTTTGAAACACAAGTGTGGTAAA 57.666 33.333 15.52 6.79 46.84 2.01
2343 3793 5.968528 ACTTTGAAACACAAGTGTGGTAA 57.031 34.783 15.52 0.00 46.84 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.