>input_sequence_82519
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------ATGGAACCACGTCAGCTTGGGATGGAGGAGTCCTACGCTGCCACCGC
GGCCGAGGTGCTAAAGCCGGTGGAAACGCCGTCCAACGGTGAAGGATGCCCTATATGCTTGGGTCAGGAGGAGGCCGCGG
CGACCGCGTGGAAGGAGACAGCCTGCGGACACAGCTTCCATGGACGGTGCGTGGAAAGGTGGCTCGAGACAAAGGGAACT
TGCCCCATGTGTCGGCGTCAGCTTCTAGTACCATCCATTGCGACACAAAGACATATTCGCCTTCCTAATCCTATGATGAC
AATGGCGATTGAGATAGTGAACAGGAATCCGGAGATATACTCATCACAAGCATACGAGCTTTTAAGACGGTAT-ATGTAG
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>chr3D_1_TraesCS3D01G135000
TGCAGGCGGTTTGAGGGTCCGCGTTGGAGATGCCCTAAGCAATCGTGAATCTAAGAACTGTGCAACAACATAGCTTCCAT
GGATGCATACAAGATAGTACATTATCAAAACAAAAGT-AGTCTATGTGGCAATTTGATAGTCAAAGAAATATACATGATC
ATAATGTACTTGCTAAATTTCTTTCAAATTTCGGTGAAATTTCATTTGAATTTGGGGTCCTGTTTCGGTGTGAAATTTCC
AAAATTTCGGATATTTCAATGGGTCCCAAAATTTATCGCATAACGAAATATTTTTCCTTGGCTCCGATGAAGCGGAAGCA
TATTGGCGCCGGCGACCGA---GGCTGTTCGGGATGGTGCAACATTGCGAGCTGCGCCCCGACGGGCATATCGG--CACA
CGTGCTGCGTGCTGGTGAGTAGGGCCTACTGCAAGCGGGAGCAACCGAGGCTGTTCGCCGAGATGCTTGGTGCCGAGGTC
GGACGTGTGTTCTTGGG---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------AGAAAAAGAAGAAGGGGGACGTGCACCGTGGGGATTAAA
AAGCGAATGAGCTGAGACTTCCATGGTTGGAGAACAATGGCACGATCCTATG----------------------------
--TCTCTCGAATATCA----ATACATGCATACACGTACTACTACGCGTAAACCCCGCGTCCCGTGGCTGTTTCTTCCCAA
TGGGTTGGGCCGGGGAGAGTGCAGTGTGGGCTGAGATCGAATCACGCTGGTACAA-----GTACATGGACAACTCCACTG
CGTATACGTACGTACGTTGATCGCCCCTGAATCCTACTCGTCGACTGATCGCTAACCGTCTCCTACTCCCATTGCGCAAC
TTTCTTCTCTATATA-ACATGCAACCCAAACGCCCTCTCC-AAGATT-AGAGAACCACAGGAGCCAACTTTCCTCTTCCC
C-GATCGGAACTAAATTCTCCGGTCACACTAAGAACCCAAGTCGACGACCAGCCGGCCGGGAACTCGCCGTAGTGCCTTG
TTTTGGTAGCGTGGAGGGTAGGGAACTTCTGGCATGGAACCACGTCAGCTTGGGATGGAGGAGTCCTACGCTGCCACCGC
GGCCGAGGTGCTAAAGCCGGTGGAAACGCCGTCCAACGGTGAAGGATGCCCTATATGCTTGGGTCAGGAGGAGGCCGCGG
CGACCGCGTGGAAGGAGACAGCCTGCGGACACAGCTTCCATGGACGGTGCGTGGAAAGGTGGCTCGAGACAAAGGGAACT
TGCCCCATGTGTCGGCGTCAGCTTCTAGTACCATCCATTGCGACACAAAGACATATTCGCCTTCCTAATCCTATGATGAC
AATGGCGATTGAGATAGTGAACAGGAATCCGGAGATATACTCATCACAAGCATACGAGCTTTTAAGACGGTAT-ATGTAG
GAGACATTTGAAGGTGACCGAAGACAA-TGTTGGCACATGCAACCGTGCGTGTACTTTCATTAGATATACATATGAGCAC
AATGCTAAGAGTTTT-GTATTTTTTTCACATGGATAAAAA--AATTCTTTCAAGCAAGTGAGGGTCCCAACAAGTAAAGA
TATATTTAGGATAGTAAAACTAGGTTTAAATAGAGTCT---TCTCGGTGATTTGCGTTTCTGGCCGTCTTTTTTCGCGAT
ATGAATGCTTCTGCTCATCTGATCTCGTCTCTACATCTATCTCTCCCGCGTGTGCTAGATAGTGGCCCAGGCCAACTCTC
TCGAAAGCTCTCCTGATCT--------CTCTTCTTGTTGCTTCCCCATTGAGAGTCGAAAATGGAATCCCGGCTCCATCC
TTCTTCTTCTCCGGCGGTGACGATGCTCGGCGGAGGGATGTGACAGGAGGCCGGCTAGCTACTGTATATACTACTTGTAG
ATTGTCTGTTGGCTTTATACTGGTGTTCGGCTTTATGCTGGCGTTCGGCCTTGTGCCGCTGAGTGGTCAGCCGTGTTAGA
ATAAATTCGAGGTACGCGGTCGATCCACCGAGGAACAAGCAATCACAGACAATGACGACACCGAGATTTGTTAACGAGGT
TCGGCGAACTCGCCTACTCCTCAGGGCAATGACTATTTGTGGCAAAGCCACCGTTCATAATTCTTTCATACATGTCACTC
TTGATTCATTGCATATCCCGGTACACCGCCGGAGGCATTCACATAGAGTCATATTTTGTTCTAAGTATTGAGTTGTAATT
GTTGAGTTGTAAGTAAATAAAAGTGTGATGATCATCATTTTTAGAGCATTGTCCCAAGTGAGGAAAGGATGGTGGAGACT
ATGATTCCGCCACAAGTCGGGATGAGACTCCGGACGAAAAAAAAGAGACCATAAAAAAGGCCCAAATAAAAAAATAAGAG
AAAAAGAGAGAAGGGACAATGTTACTATCCTTTTACCACACTTGTGTTTCAAAGT
>chr3A_1
TGCAGGCGGCTTGAGGGTCGGCATTGGAGATGCCCTAAGCAATCATGAATCTAAGAACTGTGCAACAACATAGCTTCCGT
GGATGCACACAAGATAGTACATTATCAAAACAAAGTAGAGTCTATGTGACAAGTTGATAGTTAACGAAATATACATGATC
ATAATATACTTCCTAAATTTCATTCAAATTTCGATGAAATTTCATTTGAATTTGAGGTCCTGTTCCGGCGTGAAATTTTC
AAAATTTCCGTATTTTTCG--------------------------------------TTGGCTCCGAGGAAGCGGAAGCA
TATGGGCGCCGGCGACCTCACTGGCTGTTCGGGATGGTGCAGCATTGCGAGCTGCGCCCCGACGGGCACGTCGGCACACA
CGTGCTGCGTGCTGGTGAGTAGGGCC--CTGCAAGCGGGAGCAACTGAGGCTGTTCGCCGAGATGCTTGGTGCCGAGGTC
GGACGTGTGTTCTTAGAGCATCTCCAGCCGCGTTCCAGAAAGGCCTCCCCATGTGATTTTCTCGCGCCGGCGCCGTAAAA
ACGGCTCAGTCGCGTCCCCGGGAGCCCGATTTTTGCCGGTATAGGCTGAAAACAGCACCGGCGGACCCAGGCCGAACCCG
GCGCGCTAGGGGGCGCCCGGGGGCGAGCCGCGTCAGTGACAAGGCCACCGACCACCGGCGCGTCGTTGGTGGACGCCAAC
CGCTGCCGCTGGCGGCGCTCGAAGTACGCCGTCCAAGCCGCATGGTTGTCGACGGCGTACTGGGGGAGGAAGAGCTGGGC
GTCGGTGAGGGAGGCGCGGACGACCTCGACCTCCTCGGCGAAGTAGTTTGGCTTGGCCACGGCGTCACCTGTGGTGGGGC
GTCCCCGGCCGCACACTCGAGGGCGTGCTGACGCACCTCGAGGGCGGCAACAACCCGCCGTTGGCGTACCCGGCGAGGGC
GGCCGCCCCGCCGCACCACCGACGCGCCGGGCCATGGGCGCCAAGGAGGTTCGGGTCCTCCTCCTCTTCTTCCTCCTCGC
GCTCTTCCTCACACTCCTCCGGTGCTCCGGCCCTGCTCGGCATCAAGGCCGAGCCCGCGGCGGAGACACCGCTCGGCCGG
CGCACTCGCAGCGTCGGCACCGTCATCGACGAGGGCGGCCGGCACGCCTCCTCGTCGGCTCCTCCTCCGCGCTTCGTCAA
GTCAAAGACGGAGCCGGGGCTCGCGCCGGTGAAGACGGAGCCGGGGCTCGCGCCGGCGAAGAAGGAGCCGGACGCGCCGG
TGAAGACGGAGCTCGACGACGACGACGCGGCCCTGAAATGGGCGCGCAGGGACTCCATAGCGATGGAGAAGGAGCGCCTG
GAGAAGGCGAAGGAGCGCCAGTGCGGCGCCCAGCGCCGCTTCGCGCAGCGCCGACGCGGCCGCGACGAAGGCGGGGTCGT
CGTCATCTGCGACAGCGACGACGACGACGCGCCACCGCCACCAGCCCGCGTTGGCGACGCCGGTCAGGGGTCCACCAGGG
ACGGCTGCGTCAAGGAGGAGAAGTCCGACGACAACGGCGACGATGGCGGCGACAATGGCGACTACTCGGCGTTCAGCCAG
TTTCTTTTTTAGTTTAGTTATTATCTATTTTGCTATGTAATGAAAACCGGTGAACATGCCTAATATATGTCCAAGTTTGC
CGAAATTTATCGTGTTTCGCTGAACTTCGCCGAACTGTGTCGAAATTTGCTTTACAAATTTTATTTTCAAACGCGCCTGG
GGCGACCCTGGGGCCGGCGGCTGGGGACCAACTCGCCCCCAGGCCCAATTTTTGCGCCGGCTCATCTCTAGGCGGCGATT
TTAGGCGCCCTGAGGGGCCAACGGCTGGAGATGCTCTTAGTAGAAAAAGAAGAAGGGGAACGTGC---------------
------------------TTTCATGGTTGGAGAACAATGGCACGATCCTATA----------------------------
--TCTGTCGAATAACAATACATATATGCATACACGTACTACTACGCGTAAACCCCGCGTCCCGTGGCTGTTTCTTCCCAA
TGAGTTGGGCAGGGGAGAGTGCAGTGTGGGCTGAGACCGAATCACGCTCGTACAA-----GTACATGGACAAGTCCACTG
CGTATACGTACGT----TGATCGTCCCTGAATCCTACTCGTCGACTGATCGCTAACCGTCTCCTACTCCCGTTGCGGAAC
TTTCTTCTTTATATATACATGCAACCCAAACGCCCTCTCC-A-GATT-AGAGAACCACAGGAGCCAACTTTCCTCTTCCC
C-GATCGGAACTAAATTCGCCGGTCATACTAAAGACGCAAGTCAACGACCAGCCGGCCGGAAACTCGCCGTAGTGCCTTG
TTTTGGTGGCGTGGAGGGTAGGGAACTTCTGGCATGGAACCACGTCAGCTTGGGATGGAGGAGTCCTGCGCTGCCACCGC
GGCCAAGGTGCTAAAGCCCGTGGAAACGCCATCTGACGGTGAAGAATGCCCTATATGCTTGGGTCAGGAGGAGGCCGCGG
CGACCGCGTGGAAGGAGACGACGTGTGGACACAACTTTCATGGACGGTGCGTGGAAAGGTGGCTCGAGACAAAGGGAACT
TGCCCCATGTGTCGGCGTCAGCTTCTAGTACCACCGATTGCGACACAAAGACATATTCGCCTTCCTAATCCTATGATGAC
AATGGCGATTGAGATAGTGAACAGGAATCCAGAGATATACTCATCAGAAGCACACGAGCTTTTAAGACGTTAT-ATGTAG
GAGACATTTGAAGGTGACCGAAGACAA-TGTTGGCATATGCAACCGTCCGTGTACTTCCATTAGCTATATATATGAGCAC
AATGCTAAGAGTTTT-GTATTTGTT-CATATGGATAAAAA--AATTCTTTCAAGCAAGTGAGGGTCCCGACAAGTAAAAA
TATATTTAGGATAGTAAAACTGAGTTTAAATAGAGTCT---TTTCGGTGATTTGCGTTTCTGGCCGTCTTTTTTCGCGAT
ATGAATGTTTCTGCTCATCTGCTCTCGTCTCTACATCTATCTCTCCCGCATGTGCTAGGTAGTGGCCCGGGTCAACTCTC
TCGAAAGCTCTCCTGATCTCCTGATCTCTCTTCTTGTTGCTTCCCCATTGAGAGTCGAAAATGGAATCACGGCTCCGTCC
TTCTTCTTCTCTGGCAGTGACGATGCTCGGCGGAGGGATGTGACTGGAGACCGGCTAGCTATTGTATATACTACTTGTAG
AGTGTCTGTTGGCTTTATGCTGGTGTTCGGCTTTATGCTGGCGTTCGGCCTTGTGCCGCTGAGTGGTCAGCC--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>chr3B_372
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------GCCCCGACGGGCACATCGGCACACA
CGTGCCTCGAGCTGGTGAGTAGGGCCTACTGCAAGCGGGAGCAACTGAGGCTGCTCGCCGAGATGCTTGGTGCCGAGGTC
GGACGTGTGTTCTTGGG---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------AGAAAAAGG---AGGGGAACGTGCACCGTGGAGATTAAA
AAACGAACGAGCTGAGATTTGCATGGTTCGAGGACAATTGCACGATCCTTTCTCTCGAATAGTATTTATTTTTGAGGATC
ATTCTGTCGAATAGCA----ATACATGCATACACT------------TAAACCCCGCGTCCCGTGGTTGTTTCTTCGCAA
TGGGTTGGGCCGGGGAGAGTGCAGTGTGGGCTGAGACCGAATCACGCTCGTACAA-----GTACATGGACAACTCCACTG
CGTATACCTACGT----TGATCGTCCCTGAATCCTACTCGTCGACTGATCGCTAACCGTCTCCTACTCCCGTTGCGCAAC
TTTCTTCTCTATATA--CATGCAACCCGAACGCCCTCTCCAA-GATT-AAAGAACCACAGGAGCCAACTTTCCTCTTCCC
CCGATCGGAACTAAATTCTCCGGTCACACTAAGAACCCAAGTCGACGACCAGCCGGCCGGGAACTTGCCGTAGTGCCTTG
TTTTGGTAGCGTGGAGGGTAGGGAACTTCTGGCATGGAACCACGTCAGCTTGGGATGGAGGAGTCTTACGCTGCCACCGC
GGCCGAGGTGCTAAAGCCGGTGGAAATGCCGTCCAACGGTGAAGGATGCCCTATATGCTTGGGTCAGGAGGAGGCCGCGG
CGACCGTGTGGAAGGAGACAGCCTGCGGACACAGCTTCCATGGACGATGCGTGGAAAGGTGGCTGGAGATGAAGGGAACT
TGCCCCATGTGTCGGCGTCAGCTTCTAGTACCACCCATTGCGACACAAAGACATATTTGCCTTCCTAATCCTCTGATGAT
GATGGCGATTGAGATACTTGACAGGTATCCGGAGATATACTCATCTGAAGCATACCAGCAGTTAAGACAAATACATGTAG
GAGACATTTGAAGGTGACTCACGACAA-TGTTGGCATATGCAACTGTTTGTGTACTTTCGTTAGCTATACATATGAGCAT
AATGCTAAGAGTTTTTGTATTTTTC-CATATGGGTATCTTTTTTTACTTCCAAGCAAGTGAGGGTCCCAACAAATAAAGA
TATATTTATGACAGTAAAAGTA----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>chr3D_678
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------CAGCGTGGGCTGGGACAGAAGCTCGCTCGTACAAGCACTGTACAGGGACGACTCCATTG
CGTA----TACGT----TGATCGTCCGTGAATCCTACTCGTTGATCGTCCGACAATCGTCTCCTACTCCCGTTGCGCAAC
TTTCTTCCCCATATATGCCACCGACCCAAACGCCCTCTCCAA-GAACCAAAGAACCACAGGAGCTAACCTCCCTCTTCCC
C-GATCGGAACTAA---CGCCGGTCACACTAAAAGCCTAAGTCAACGACCAGCCGGCCGGGAACTCGCCGTAGTGCCTTG
TTTTGGTAGCGTGGAGGGTGGGGTACTTCTGGCATGGAACCACGTCAGCTTGGGATGGAGGAGTACCGCGCTACCACCGT
GGCCGAGGTGCTAAAGCAGGTGGAAACGCCATCCGACGGTGAAGGATGCCCTATATGCTTGGGTCAGGAGGAGGCCGCGG
CGACCGCGTGGAAGGAGACGGTGTGCGGACACAGCTTTCACGGACGGTGCGTGAAAAGGTGGCTCGAGACGAAGGGAACT
TGCCCCATGTGTCGGCATCAGCTTCTAGTACCACCCATTGCGACACAAAGATATGTTCGCCTTCCTAATCCTATGATGAC
AATGGCGATTGAGATAATGGACAGGGATCCGGAGATATACACATCAGAAGCATACGAGTATTTTAGACAGTAT-ATGTAG
GAGACATTTGAAGGTGACTGAAGACAA-TGTTGGCATATGCAACCATTTGTGTACTTTCGTTAGCTATACATATGAGCAC
AATACTAAGAGTTTT-GTATTTGTC-CATATGGATATATA--TTTTCTTTCAAGCAAGTGAGGGTCCTAACAAATAAAGA
TATATTTAGGACACTAAAAAAACGGAGCCTAAACAGAGCTCTCTCGGTGATTTGTGTTTTTGGCCGGTCTTTATCGCGAT
CCAGATGTTACTGGCCGGCTG-TCTCGTCTCTACAACCATCTCTCCTGCATGTGCTAGATAGTGGCCCA-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>chr3B_805
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------GCGCAAC
TTTCTTCCCGATATATGCCACCGACCCAAACGCCCTCTCCAA-GAACCAAAGAACCACAGGAGCCAACCTTCCTCTTCCC
C-GATCGGAACTAAATT----------------AACCCAAGTCAACGACCAGCCGGCCGGGAACTCGCCGTAGTGCCTTG
TTTTGGTAGCGTGGAGGGTGGGGTACTTCTGGCATGGAACCACGTCAGCTTGGGATGGAGGAGTCCTGCGCTGCCACCGC
GGCCGAGGTGCTAAAGCCCGTGGAAACGCCATCCGACGGTGAAGGATGCCCTATATGCTTGGGTCAGGAGAAGGCCGCGG
CGACCTGGTGGAAGGAGACGGCGTACGGACACAGCTTTCATGGACGGTGCGTGGAGAGGTAGCTCGAAATGAAGGGAACT
TGTCCCATGTGTCGGTGTGAGCTTCTAGTACCACCCATTGCGACACAAAGATATGTTCGCCTTCCTAATCCTATGATGAC
CATGGCGATTGAGATAATGAACAGGGATCCGGAGATATACACATCAGAAGCATACGAGTATTTTAGACAGTAT-ACGTAG
GAGACAATTGAAGGTGACTGAAGCTTGGTGTTGACATATGCAACCATTCGTGTACTTCCGTTAGCTATACATATGAGCAC
AATACTAAAAGTTTT-GTATTTGTC-CATATGGATATATA--TTTCCTTTCAAGCAAGTGAGGGTCCTAA-AAATAAAGA
TATA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>SNPs
---------S---------S--S---------------------S---------------------------------S-
-------S--------------------------SSS-----------S---S--------S--S---------------
-----S-----S---------S-----------S--------------------S---------S---S---------S-
--------S-SSS---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S------------
---S-------------SS----------------------S--------------------------S-----------
---------------------------------------------S----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------S-------------S-------
--S----S---------S--S------------------------------S----------------------------
-----S-------S------------------------------------------------------------------
------------------------------------S-----------S-------------------------------
-------------SSSS------S----------------------------------------------S---------
------------------------------------------S-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------S----------------------------------------------
----------------------------------------------S---------------------------------
------------------------------------S----------S----------------S---------------
-------------------------S--S---------------------------------------------------
----------------------S---------------------------------------------------------
-------S-------------S---------------------------S---------------------S--------
--------------------------------------------------------------------S-------S---
-----------S---S----------------------------S----S-----------S------------------
-S----------------S-----------------------------------------------------SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_229
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------ATTTGGGGTCCTGTTTCGGT-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>reverse_3428
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------TTGTTAACGAGGT
TCGGCGA-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
