Multiple sequence alignment - TraesCS3D01G133100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G133100 chr3D 100.000 2940 0 0 1 2940 92751676 92748737 0.000000e+00 5430.0
1 TraesCS3D01G133100 chr3D 97.448 1254 11 8 898 2139 92783211 92784455 0.000000e+00 2119.0
2 TraesCS3D01G133100 chr3D 95.294 340 14 2 2602 2940 141337320 141336982 3.330000e-149 538.0
3 TraesCS3D01G133100 chr3D 94.093 237 13 1 2135 2370 421266630 421266394 2.790000e-95 359.0
4 TraesCS3D01G133100 chr3D 92.398 171 9 4 2378 2546 92787396 92787564 1.050000e-59 241.0
5 TraesCS3D01G133100 chr3D 91.489 141 7 1 712 847 92781794 92781934 3.870000e-44 189.0
6 TraesCS3D01G133100 chr3B 92.474 1900 69 27 291 2138 144058946 144057069 0.000000e+00 2649.0
7 TraesCS3D01G133100 chr3B 93.256 1468 48 22 705 2138 144069456 144070906 0.000000e+00 2115.0
8 TraesCS3D01G133100 chr3B 91.714 350 24 4 2592 2940 557164031 557164376 5.700000e-132 481.0
9 TraesCS3D01G133100 chr3B 91.444 187 9 4 1957 2136 144074567 144074753 1.750000e-62 250.0
10 TraesCS3D01G133100 chr3B 96.748 123 4 0 1 123 144059237 144059115 3.840000e-49 206.0
11 TraesCS3D01G133100 chr3B 91.333 150 5 1 122 271 144059065 144058924 6.430000e-47 198.0
12 TraesCS3D01G133100 chr3B 85.124 121 2 6 2378 2498 144074755 144074859 3.100000e-20 110.0
13 TraesCS3D01G133100 chr3B 97.778 45 1 0 2558 2602 144074867 144074911 8.740000e-11 78.7
14 TraesCS3D01G133100 chr3B 90.000 60 1 3 2380 2434 144057065 144057006 4.060000e-09 73.1
15 TraesCS3D01G133100 chr3B 90.000 60 1 3 2380 2434 144070910 144070969 4.060000e-09 73.1
16 TraesCS3D01G133100 chr3A 89.742 1472 68 43 705 2136 547235309 547233881 0.000000e+00 1805.0
17 TraesCS3D01G133100 chr3A 92.260 1292 52 18 856 2133 547254549 547255806 0.000000e+00 1788.0
18 TraesCS3D01G133100 chr3A 86.279 430 33 16 285 689 547253005 547253433 7.480000e-121 444.0
19 TraesCS3D01G133100 chr3A 96.124 129 4 1 141 268 547252902 547253030 2.970000e-50 209.0
20 TraesCS3D01G133100 chr3A 83.660 153 9 5 2380 2532 547255808 547255944 2.380000e-26 130.0
21 TraesCS3D01G133100 chr3A 90.526 95 4 2 2378 2467 547233884 547233790 1.430000e-23 121.0
22 TraesCS3D01G133100 chr3A 91.429 70 5 1 2540 2609 547227962 547227894 8.670000e-16 95.3
23 TraesCS3D01G133100 chr4B 91.883 1269 42 19 889 2136 50443145 50444373 0.000000e+00 1716.0
24 TraesCS3D01G133100 chr4B 90.379 1268 53 24 889 2136 50400485 50399267 0.000000e+00 1602.0
25 TraesCS3D01G133100 chr4B 88.584 657 22 17 285 900 50442393 50443037 0.000000e+00 749.0
26 TraesCS3D01G133100 chr4B 89.527 592 19 15 285 840 50401256 50400672 0.000000e+00 710.0
27 TraesCS3D01G133100 chr4B 96.667 150 5 0 122 271 50401377 50401228 1.750000e-62 250.0
28 TraesCS3D01G133100 chr4B 96.667 150 5 0 122 271 50442272 50442421 1.750000e-62 250.0
29 TraesCS3D01G133100 chr4B 97.600 125 3 0 1 125 50401553 50401429 6.380000e-52 215.0
30 TraesCS3D01G133100 chr4B 97.600 125 3 0 1 125 50442095 50442219 6.380000e-52 215.0
31 TraesCS3D01G133100 chr4B 89.308 159 11 4 2378 2532 50399270 50399114 8.310000e-46 195.0
32 TraesCS3D01G133100 chr4B 95.714 70 2 1 2540 2609 50399076 50399008 8.610000e-21 111.0
33 TraesCS3D01G133100 chr5D 95.294 340 10 4 2602 2940 534398493 534398159 4.310000e-148 534.0
34 TraesCS3D01G133100 chr5D 94.985 339 14 2 2602 2940 410780053 410779718 2.010000e-146 529.0
35 TraesCS3D01G133100 chr5D 80.702 456 71 11 1447 1898 480154987 480154545 3.630000e-89 339.0
36 TraesCS3D01G133100 chr5D 79.012 162 26 7 1033 1190 493833639 493833796 1.440000e-18 104.0
37 TraesCS3D01G133100 chr6D 94.379 338 16 2 2602 2939 58422099 58422433 1.560000e-142 516.0
38 TraesCS3D01G133100 chr6D 93.249 237 15 1 2135 2370 151317213 151317449 6.030000e-92 348.0
39 TraesCS3D01G133100 chr1D 93.447 351 14 5 2595 2940 431950244 431949898 2.020000e-141 512.0
40 TraesCS3D01G133100 chr1D 93.750 240 14 1 2132 2370 423924494 423924733 2.790000e-95 359.0
41 TraesCS3D01G133100 chr4A 91.594 345 24 3 2596 2940 226029105 226028766 3.430000e-129 472.0
42 TraesCS3D01G133100 chr4A 83.562 292 35 6 314 596 368110483 368110770 8.080000e-66 261.0
43 TraesCS3D01G133100 chr4A 93.939 66 4 0 122 187 368110361 368110426 1.860000e-17 100.0
44 TraesCS3D01G133100 chr5A 91.471 340 25 1 2601 2940 398941055 398940720 5.740000e-127 464.0
45 TraesCS3D01G133100 chr5A 80.044 456 74 10 1447 1898 598637742 598637300 3.660000e-84 322.0
46 TraesCS3D01G133100 chr5A 79.012 162 28 5 1030 1188 616878687 616878845 4.010000e-19 106.0
47 TraesCS3D01G133100 chr1B 93.671 237 14 1 2135 2370 266927505 266927269 1.300000e-93 353.0
48 TraesCS3D01G133100 chr7D 92.683 246 14 4 2127 2370 166205547 166205304 4.660000e-93 351.0
49 TraesCS3D01G133100 chr7D 93.305 239 15 1 2133 2370 458524314 458524076 4.660000e-93 351.0
50 TraesCS3D01G133100 chr7D 93.249 237 15 1 2135 2370 209183667 209183903 6.030000e-92 348.0
51 TraesCS3D01G133100 chr2D 92.946 241 15 2 2132 2370 6206339 6206099 1.680000e-92 350.0
52 TraesCS3D01G133100 chr6B 92.562 242 16 2 2130 2370 707342593 707342833 2.170000e-91 346.0
53 TraesCS3D01G133100 chr5B 94.643 224 10 1 2669 2892 166707472 166707693 2.170000e-91 346.0
54 TraesCS3D01G133100 chr6A 83.219 292 36 6 314 596 359067934 359068221 3.760000e-64 255.0
55 TraesCS3D01G133100 chr6A 94.406 143 8 0 121 263 359067777 359067919 1.370000e-53 220.0
56 TraesCS3D01G133100 chr7A 92.000 50 2 2 2591 2640 634664035 634664082 5.260000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G133100 chr3D 92748737 92751676 2939 True 5430.000000 5430 100.000000 1 2940 1 chr3D.!!$R1 2939
1 TraesCS3D01G133100 chr3D 92781794 92787564 5770 False 849.666667 2119 93.778333 712 2546 3 chr3D.!!$F1 1834
2 TraesCS3D01G133100 chr3B 144057006 144059237 2231 True 781.525000 2649 92.638750 1 2434 4 chr3B.!!$R1 2433
3 TraesCS3D01G133100 chr3B 144069456 144074911 5455 False 525.360000 2115 91.520400 705 2602 5 chr3B.!!$F2 1897
4 TraesCS3D01G133100 chr3A 547233790 547235309 1519 True 963.000000 1805 90.134000 705 2467 2 chr3A.!!$R2 1762
5 TraesCS3D01G133100 chr3A 547252902 547255944 3042 False 642.750000 1788 89.580750 141 2532 4 chr3A.!!$F1 2391
6 TraesCS3D01G133100 chr4B 50442095 50444373 2278 False 732.500000 1716 93.683500 1 2136 4 chr4B.!!$F1 2135
7 TraesCS3D01G133100 chr4B 50399008 50401553 2545 True 513.833333 1602 93.199167 1 2609 6 chr4B.!!$R1 2608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
289 356 0.177141 TATTTCCTTCAGCCGTCGGG 59.823 55.0 14.38 0.0 0.00 5.14 F
1872 4316 0.621280 TGGTGGGAGATGCTCATGGA 60.621 55.0 0.00 0.0 31.08 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1930 4374 3.181499 CGCGGAGAAACATCTAGTACTGT 60.181 47.826 5.39 0.0 0.00 3.55 R
2798 11916 0.244450 CAACGCATGGGCATTCAACT 59.756 50.000 10.10 0.0 41.24 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 1.834188 TATGCTGACGACAGACCAGA 58.166 50.000 19.07 2.59 46.03 3.86
144 203 7.011950 CCATACGAGGAACTACATGCATAAAAA 59.988 37.037 0.00 0.00 41.55 1.94
147 206 8.142994 ACGAGGAACTACATGCATAAAAATAG 57.857 34.615 0.00 0.00 41.55 1.73
277 344 4.118168 CAGGGGTTGCCATATATTTCCT 57.882 45.455 0.00 0.00 0.00 3.36
278 345 4.482990 CAGGGGTTGCCATATATTTCCTT 58.517 43.478 0.00 0.00 0.00 3.36
279 346 4.524328 CAGGGGTTGCCATATATTTCCTTC 59.476 45.833 0.00 0.00 0.00 3.46
280 347 4.169856 AGGGGTTGCCATATATTTCCTTCA 59.830 41.667 0.00 0.00 0.00 3.02
281 348 4.524328 GGGGTTGCCATATATTTCCTTCAG 59.476 45.833 0.00 0.00 0.00 3.02
282 349 4.021981 GGGTTGCCATATATTTCCTTCAGC 60.022 45.833 0.00 0.00 0.00 4.26
283 350 4.021981 GGTTGCCATATATTTCCTTCAGCC 60.022 45.833 0.00 0.00 0.00 4.85
284 351 3.411446 TGCCATATATTTCCTTCAGCCG 58.589 45.455 0.00 0.00 0.00 5.52
285 352 3.181445 TGCCATATATTTCCTTCAGCCGT 60.181 43.478 0.00 0.00 0.00 5.68
286 353 3.437049 GCCATATATTTCCTTCAGCCGTC 59.563 47.826 0.00 0.00 0.00 4.79
287 354 3.679980 CCATATATTTCCTTCAGCCGTCG 59.320 47.826 0.00 0.00 0.00 5.12
288 355 2.240493 ATATTTCCTTCAGCCGTCGG 57.760 50.000 6.99 6.99 0.00 4.79
289 356 0.177141 TATTTCCTTCAGCCGTCGGG 59.823 55.000 14.38 0.00 0.00 5.14
371 438 2.693285 GCGGCGATGTTACACGAC 59.307 61.111 12.98 7.18 0.00 4.34
409 481 1.829849 TGAGGAGCAGATGAGACCTTG 59.170 52.381 0.00 0.00 0.00 3.61
426 499 6.352516 AGACCTTGTATATTTCCTTCAGCTG 58.647 40.000 7.63 7.63 0.00 4.24
563 637 1.538950 CAAGAAAAGTCAGGCTGCCTC 59.461 52.381 20.49 8.95 0.00 4.70
574 648 1.028868 GGCTGCCTCTGTTGTCATCC 61.029 60.000 12.43 0.00 0.00 3.51
594 668 4.223800 GCCATCAGCGATCCACAA 57.776 55.556 0.00 0.00 0.00 3.33
595 669 2.481212 GCCATCAGCGATCCACAAA 58.519 52.632 0.00 0.00 0.00 2.83
633 726 6.365970 ACAAGGAATATGCCTAGGAGTATG 57.634 41.667 14.75 0.00 37.26 2.39
640 733 1.417517 TGCCTAGGAGTATGCATGTGG 59.582 52.381 14.75 2.12 0.00 4.17
823 1857 8.074972 GCAGAAATGAAATAAAGCAGATCTAGG 58.925 37.037 0.00 0.00 0.00 3.02
842 1876 3.851098 AGGCACTAGCTAAAAAGTCGAG 58.149 45.455 0.00 0.00 41.70 4.04
906 3291 5.454755 GGTGCTCCCTGCTCTTGTATAAATA 60.455 44.000 0.00 0.00 43.37 1.40
939 3324 4.394712 GGCCTCCTCCCACACACG 62.395 72.222 0.00 0.00 0.00 4.49
1005 3440 3.556999 TCTCCTGTAGTGTAGAGCATCC 58.443 50.000 0.00 0.00 33.66 3.51
1006 3441 2.625790 CTCCTGTAGTGTAGAGCATCCC 59.374 54.545 0.00 0.00 33.66 3.85
1007 3442 2.245028 TCCTGTAGTGTAGAGCATCCCT 59.755 50.000 0.00 0.00 33.66 4.20
1872 4316 0.621280 TGGTGGGAGATGCTCATGGA 60.621 55.000 0.00 0.00 31.08 3.41
1930 4374 1.621814 ACGGAGTTTAAGCTAGGTGCA 59.378 47.619 0.00 0.00 37.78 4.57
1955 4404 0.248498 CTAGATGTTTCTCCGCGCGA 60.248 55.000 34.63 16.66 33.17 5.87
2039 4507 0.738975 TCATCTGCCCGTCTAGTTCG 59.261 55.000 0.00 0.00 0.00 3.95
2040 4508 0.456221 CATCTGCCCGTCTAGTTCGT 59.544 55.000 8.60 0.00 0.00 3.85
2044 4512 1.211190 GCCCGTCTAGTTCGTTCGT 59.789 57.895 8.60 0.00 0.00 3.85
2135 8458 5.468746 CCTTGCTTTAAGTTGTGCACTAGTA 59.531 40.000 19.41 3.03 32.94 1.82
2136 8459 5.917541 TGCTTTAAGTTGTGCACTAGTAC 57.082 39.130 19.41 10.66 32.94 2.73
2137 8460 5.607477 TGCTTTAAGTTGTGCACTAGTACT 58.393 37.500 19.41 12.69 32.94 2.73
2138 8461 5.694910 TGCTTTAAGTTGTGCACTAGTACTC 59.305 40.000 19.41 0.00 32.94 2.59
2139 8462 5.120363 GCTTTAAGTTGTGCACTAGTACTCC 59.880 44.000 19.41 0.00 32.94 3.85
2141 8464 2.890814 AGTTGTGCACTAGTACTCCCT 58.109 47.619 19.41 0.00 31.97 4.20
2142 8465 2.826725 AGTTGTGCACTAGTACTCCCTC 59.173 50.000 19.41 0.00 31.97 4.30
2143 8466 1.848652 TGTGCACTAGTACTCCCTCC 58.151 55.000 19.41 0.00 0.00 4.30
2144 8467 0.739561 GTGCACTAGTACTCCCTCCG 59.260 60.000 10.32 0.00 0.00 4.63
2146 8469 1.272313 TGCACTAGTACTCCCTCCGTT 60.272 52.381 0.00 0.00 0.00 4.44
2147 8470 1.404748 GCACTAGTACTCCCTCCGTTC 59.595 57.143 0.00 0.00 0.00 3.95
2148 8471 2.022934 CACTAGTACTCCCTCCGTTCC 58.977 57.143 0.00 0.00 0.00 3.62
2149 8472 1.637553 ACTAGTACTCCCTCCGTTCCA 59.362 52.381 0.00 0.00 0.00 3.53
2150 8473 2.244252 ACTAGTACTCCCTCCGTTCCAT 59.756 50.000 0.00 0.00 0.00 3.41
2151 8474 3.461085 ACTAGTACTCCCTCCGTTCCATA 59.539 47.826 0.00 0.00 0.00 2.74
2152 8475 3.393426 AGTACTCCCTCCGTTCCATAA 57.607 47.619 0.00 0.00 0.00 1.90
2153 8476 3.924922 AGTACTCCCTCCGTTCCATAAT 58.075 45.455 0.00 0.00 0.00 1.28
2154 8477 5.070823 AGTACTCCCTCCGTTCCATAATA 57.929 43.478 0.00 0.00 0.00 0.98
2155 8478 5.652324 AGTACTCCCTCCGTTCCATAATAT 58.348 41.667 0.00 0.00 0.00 1.28
2156 8479 6.797707 AGTACTCCCTCCGTTCCATAATATA 58.202 40.000 0.00 0.00 0.00 0.86
2157 8480 6.890814 AGTACTCCCTCCGTTCCATAATATAG 59.109 42.308 0.00 0.00 0.00 1.31
2158 8481 5.652324 ACTCCCTCCGTTCCATAATATAGT 58.348 41.667 0.00 0.00 0.00 2.12
2159 8482 5.480772 ACTCCCTCCGTTCCATAATATAGTG 59.519 44.000 0.00 0.00 0.00 2.74
2160 8483 5.399991 TCCCTCCGTTCCATAATATAGTGT 58.600 41.667 0.00 0.00 0.00 3.55
2161 8484 5.479375 TCCCTCCGTTCCATAATATAGTGTC 59.521 44.000 0.00 0.00 0.00 3.67
2162 8485 5.480772 CCCTCCGTTCCATAATATAGTGTCT 59.519 44.000 0.00 0.00 0.00 3.41
2163 8486 6.662234 CCCTCCGTTCCATAATATAGTGTCTA 59.338 42.308 0.00 0.00 0.00 2.59
2164 8487 7.342284 CCCTCCGTTCCATAATATAGTGTCTAT 59.658 40.741 0.00 0.00 0.00 1.98
2165 8488 9.404848 CCTCCGTTCCATAATATAGTGTCTATA 57.595 37.037 0.01 0.01 0.00 1.31
2182 8505 9.066892 AGTGTCTATAGATTTTTGCAAAAGTCA 57.933 29.630 34.74 25.12 37.17 3.41
2183 8506 9.677567 GTGTCTATAGATTTTTGCAAAAGTCAA 57.322 29.630 34.74 23.52 37.17 3.18
2191 8514 9.160496 AGATTTTTGCAAAAGTCAAACATTACA 57.840 25.926 34.74 15.56 37.17 2.41
2192 8515 9.766277 GATTTTTGCAAAAGTCAAACATTACAA 57.234 25.926 31.15 12.48 35.47 2.41
2196 8519 7.897575 TGCAAAAGTCAAACATTACAAACTT 57.102 28.000 0.00 0.00 0.00 2.66
2198 8521 8.226448 TGCAAAAGTCAAACATTACAAACTTTG 58.774 29.630 0.00 0.00 37.12 2.77
2242 8793 9.988815 AAGTAGGTACATCTAGAATAGCAAATG 57.011 33.333 15.24 2.67 38.99 2.32
2243 8794 8.091449 AGTAGGTACATCTAGAATAGCAAATGC 58.909 37.037 15.24 0.00 38.99 3.56
2245 8796 6.708054 AGGTACATCTAGAATAGCAAATGCAC 59.292 38.462 8.28 1.43 45.16 4.57
2246 8797 6.483307 GGTACATCTAGAATAGCAAATGCACA 59.517 38.462 8.28 0.00 45.16 4.57
2247 8798 7.173907 GGTACATCTAGAATAGCAAATGCACAT 59.826 37.037 8.28 0.00 45.16 3.21
2248 8799 7.199541 ACATCTAGAATAGCAAATGCACATC 57.800 36.000 8.28 2.59 45.16 3.06
2250 8801 7.447545 ACATCTAGAATAGCAAATGCACATCAT 59.552 33.333 8.28 0.00 45.16 2.45
2251 8802 7.812690 TCTAGAATAGCAAATGCACATCATT 57.187 32.000 8.28 0.00 41.98 2.57
2252 8803 7.645402 TCTAGAATAGCAAATGCACATCATTG 58.355 34.615 8.28 0.00 40.53 2.82
2253 8804 6.459670 AGAATAGCAAATGCACATCATTGA 57.540 33.333 8.28 0.00 44.23 2.57
2254 8805 6.869695 AGAATAGCAAATGCACATCATTGAA 58.130 32.000 8.28 0.00 44.23 2.69
2256 8807 8.635328 AGAATAGCAAATGCACATCATTGAATA 58.365 29.630 8.28 0.00 44.23 1.75
2257 8808 8.583810 AATAGCAAATGCACATCATTGAATAC 57.416 30.769 8.28 0.00 44.23 1.89
2258 8809 5.968254 AGCAAATGCACATCATTGAATACA 58.032 33.333 8.28 0.00 44.23 2.29
2259 8810 6.578944 AGCAAATGCACATCATTGAATACAT 58.421 32.000 8.28 0.00 44.23 2.29
2260 8811 6.700081 AGCAAATGCACATCATTGAATACATC 59.300 34.615 8.28 0.00 44.23 3.06
2261 8812 6.477360 GCAAATGCACATCATTGAATACATCA 59.523 34.615 0.00 0.00 44.23 3.07
2262 8813 7.170828 GCAAATGCACATCATTGAATACATCAT 59.829 33.333 0.00 0.00 44.23 2.45
2264 8815 6.945938 TGCACATCATTGAATACATCATGA 57.054 33.333 0.00 0.00 38.03 3.07
2265 8816 6.966021 TGCACATCATTGAATACATCATGAG 58.034 36.000 0.09 0.00 38.03 2.90
2268 8819 8.562052 GCACATCATTGAATACATCATGAGTTA 58.438 33.333 0.09 0.00 38.03 2.24
2309 8860 9.249457 ACATGTTTGATATTGTAGATGTAGACG 57.751 33.333 0.00 0.00 0.00 4.18
2311 8862 7.778083 TGTTTGATATTGTAGATGTAGACGGT 58.222 34.615 0.00 0.00 0.00 4.83
2312 8863 8.255206 TGTTTGATATTGTAGATGTAGACGGTT 58.745 33.333 0.00 0.00 0.00 4.44
2313 8864 9.095065 GTTTGATATTGTAGATGTAGACGGTTT 57.905 33.333 0.00 0.00 0.00 3.27
2314 8865 9.661563 TTTGATATTGTAGATGTAGACGGTTTT 57.338 29.630 0.00 0.00 0.00 2.43
2315 8866 8.867112 TGATATTGTAGATGTAGACGGTTTTC 57.133 34.615 0.00 0.00 0.00 2.29
2316 8867 8.692710 TGATATTGTAGATGTAGACGGTTTTCT 58.307 33.333 0.00 0.00 0.00 2.52
2318 8869 5.970317 TGTAGATGTAGACGGTTTTCTCA 57.030 39.130 0.00 0.00 0.00 3.27
2319 8870 6.525578 TGTAGATGTAGACGGTTTTCTCAT 57.474 37.500 0.00 0.00 0.00 2.90
2321 8872 7.478322 TGTAGATGTAGACGGTTTTCTCATAC 58.522 38.462 0.00 0.00 0.00 2.39
2322 8873 6.525578 AGATGTAGACGGTTTTCTCATACA 57.474 37.500 0.00 0.00 0.00 2.29
2323 8874 6.331061 AGATGTAGACGGTTTTCTCATACAC 58.669 40.000 0.00 0.00 0.00 2.90
2328 9257 5.794894 AGACGGTTTTCTCATACACTTGAT 58.205 37.500 0.00 0.00 0.00 2.57
2329 9258 5.869888 AGACGGTTTTCTCATACACTTGATC 59.130 40.000 0.00 0.00 0.00 2.92
2352 9281 7.232945 TCAAAGTTAGCAAAATTTGACTTGC 57.767 32.000 10.26 4.71 46.82 4.01
2353 9282 6.815641 TCAAAGTTAGCAAAATTTGACTTGCA 59.184 30.769 10.26 0.00 46.82 4.08
2354 9283 7.201513 TCAAAGTTAGCAAAATTTGACTTGCAC 60.202 33.333 10.26 5.49 46.82 4.57
2361 9290 7.140475 GCAAAATTTGACTTGCACAAAAATC 57.860 32.000 10.26 0.00 45.81 2.17
2363 9292 8.121708 GCAAAATTTGACTTGCACAAAAATCTA 58.878 29.630 10.26 0.00 45.81 1.98
2368 9297 6.194796 TGACTTGCACAAAAATCTATAGGC 57.805 37.500 0.00 0.00 0.00 3.93
2370 9299 6.377996 TGACTTGCACAAAAATCTATAGGCAT 59.622 34.615 0.00 0.00 0.00 4.40
2371 9300 6.567050 ACTTGCACAAAAATCTATAGGCATG 58.433 36.000 0.00 4.23 0.00 4.06
2372 9301 5.518848 TGCACAAAAATCTATAGGCATGG 57.481 39.130 0.00 0.00 0.00 3.66
2374 9303 5.300034 TGCACAAAAATCTATAGGCATGGAG 59.700 40.000 0.00 0.00 0.00 3.86
2375 9304 5.278660 GCACAAAAATCTATAGGCATGGAGG 60.279 44.000 0.00 0.00 0.00 4.30
2376 9305 5.242393 CACAAAAATCTATAGGCATGGAGGG 59.758 44.000 0.00 0.00 0.00 4.30
2417 11494 2.025981 ACTGGTCAATGCTGCTAATCCA 60.026 45.455 0.00 2.94 0.00 3.41
2424 11506 2.134201 TGCTGCTAATCCATACGTCG 57.866 50.000 0.00 0.00 0.00 5.12
2437 11524 8.552083 AATCCATACGTCGTATATAGTACACA 57.448 34.615 17.16 0.00 0.00 3.72
2467 11554 4.789012 TCAGAATGGATCCAAAGCAAAC 57.211 40.909 20.67 5.40 36.16 2.93
2515 11603 0.323087 TGTGCATGCATGGCTCTCTT 60.323 50.000 25.64 0.00 0.00 2.85
2585 11703 1.104630 TTTTCCAAACCGCCGACTTT 58.895 45.000 0.00 0.00 0.00 2.66
2602 11720 7.253190 CGCCGACTTTGCAGTTTATTTATTTAC 60.253 37.037 0.00 0.00 31.22 2.01
2619 11737 8.755696 TTTATTTACTAGCAAAAATGCCTGTG 57.244 30.769 8.01 0.00 34.90 3.66
2620 11738 2.730550 ACTAGCAAAAATGCCTGTGC 57.269 45.000 0.00 0.00 37.26 4.57
2621 11739 1.068333 ACTAGCAAAAATGCCTGTGCG 60.068 47.619 0.00 0.00 41.90 5.34
2622 11740 0.958091 TAGCAAAAATGCCTGTGCGT 59.042 45.000 0.00 0.00 41.90 5.24
2624 11742 0.232816 GCAAAAATGCCTGTGCGTTG 59.767 50.000 0.00 0.00 45.88 4.10
2625 11743 0.232816 CAAAAATGCCTGTGCGTTGC 59.767 50.000 0.00 0.00 45.88 4.17
2626 11744 0.179089 AAAAATGCCTGTGCGTTGCA 60.179 45.000 0.00 0.00 45.88 4.08
2627 11745 0.033781 AAAATGCCTGTGCGTTGCAT 59.966 45.000 0.00 0.00 45.88 3.96
2628 11746 0.388907 AAATGCCTGTGCGTTGCATC 60.389 50.000 0.00 0.00 45.88 3.91
2629 11747 2.531927 AATGCCTGTGCGTTGCATCG 62.532 55.000 12.78 12.78 44.90 3.84
2630 11748 4.465512 GCCTGTGCGTTGCATCGG 62.466 66.667 18.16 3.01 41.91 4.18
2631 11749 2.741985 CCTGTGCGTTGCATCGGA 60.742 61.111 18.16 13.17 41.91 4.55
2632 11750 2.324330 CCTGTGCGTTGCATCGGAA 61.324 57.895 18.16 6.39 41.91 4.30
2633 11751 1.133253 CTGTGCGTTGCATCGGAAG 59.867 57.895 18.16 11.48 41.91 3.46
2663 11781 6.923928 AAATCTTTCATGTTTGGTTTGTGG 57.076 33.333 0.00 0.00 0.00 4.17
2664 11782 4.399004 TCTTTCATGTTTGGTTTGTGGG 57.601 40.909 0.00 0.00 0.00 4.61
2665 11783 3.772025 TCTTTCATGTTTGGTTTGTGGGT 59.228 39.130 0.00 0.00 0.00 4.51
2666 11784 4.956700 TCTTTCATGTTTGGTTTGTGGGTA 59.043 37.500 0.00 0.00 0.00 3.69
2667 11785 5.600484 TCTTTCATGTTTGGTTTGTGGGTAT 59.400 36.000 0.00 0.00 0.00 2.73
2668 11786 4.862902 TCATGTTTGGTTTGTGGGTATG 57.137 40.909 0.00 0.00 0.00 2.39
2669 11787 4.219115 TCATGTTTGGTTTGTGGGTATGT 58.781 39.130 0.00 0.00 0.00 2.29
2670 11788 4.038522 TCATGTTTGGTTTGTGGGTATGTG 59.961 41.667 0.00 0.00 0.00 3.21
2671 11789 3.632333 TGTTTGGTTTGTGGGTATGTGA 58.368 40.909 0.00 0.00 0.00 3.58
2672 11790 3.634448 TGTTTGGTTTGTGGGTATGTGAG 59.366 43.478 0.00 0.00 0.00 3.51
2673 11791 3.586470 TTGGTTTGTGGGTATGTGAGT 57.414 42.857 0.00 0.00 0.00 3.41
2674 11792 3.586470 TGGTTTGTGGGTATGTGAGTT 57.414 42.857 0.00 0.00 0.00 3.01
2675 11793 3.218453 TGGTTTGTGGGTATGTGAGTTG 58.782 45.455 0.00 0.00 0.00 3.16
2676 11794 2.030274 GGTTTGTGGGTATGTGAGTTGC 60.030 50.000 0.00 0.00 0.00 4.17
2677 11795 1.904287 TTGTGGGTATGTGAGTTGCC 58.096 50.000 0.00 0.00 0.00 4.52
2678 11796 0.767998 TGTGGGTATGTGAGTTGCCA 59.232 50.000 0.00 0.00 0.00 4.92
2679 11797 1.143889 TGTGGGTATGTGAGTTGCCAA 59.856 47.619 0.00 0.00 0.00 4.52
2680 11798 1.812571 GTGGGTATGTGAGTTGCCAAG 59.187 52.381 0.00 0.00 0.00 3.61
2681 11799 1.271871 TGGGTATGTGAGTTGCCAAGG 60.272 52.381 0.00 0.00 0.00 3.61
2682 11800 1.004277 GGGTATGTGAGTTGCCAAGGA 59.996 52.381 0.00 0.00 0.00 3.36
2683 11801 2.554344 GGGTATGTGAGTTGCCAAGGAA 60.554 50.000 0.00 0.00 0.00 3.36
2684 11802 3.153919 GGTATGTGAGTTGCCAAGGAAA 58.846 45.455 0.00 0.00 0.00 3.13
2685 11803 3.191371 GGTATGTGAGTTGCCAAGGAAAG 59.809 47.826 0.00 0.00 0.00 2.62
2686 11804 2.727123 TGTGAGTTGCCAAGGAAAGA 57.273 45.000 0.00 0.00 0.00 2.52
2687 11805 2.297701 TGTGAGTTGCCAAGGAAAGAC 58.702 47.619 0.00 0.00 0.00 3.01
2688 11806 2.297701 GTGAGTTGCCAAGGAAAGACA 58.702 47.619 0.00 0.00 0.00 3.41
2689 11807 2.033424 GTGAGTTGCCAAGGAAAGACAC 59.967 50.000 0.00 0.00 0.00 3.67
2690 11808 2.092429 TGAGTTGCCAAGGAAAGACACT 60.092 45.455 0.00 0.00 0.00 3.55
2691 11809 3.135712 TGAGTTGCCAAGGAAAGACACTA 59.864 43.478 0.00 0.00 0.00 2.74
2692 11810 3.477530 AGTTGCCAAGGAAAGACACTAC 58.522 45.455 0.00 0.00 0.00 2.73
2693 11811 2.163818 TGCCAAGGAAAGACACTACG 57.836 50.000 0.00 0.00 0.00 3.51
2694 11812 1.414919 TGCCAAGGAAAGACACTACGT 59.585 47.619 0.00 0.00 0.00 3.57
2695 11813 2.629137 TGCCAAGGAAAGACACTACGTA 59.371 45.455 0.00 0.00 0.00 3.57
2696 11814 3.259876 TGCCAAGGAAAGACACTACGTAT 59.740 43.478 0.00 0.00 0.00 3.06
2697 11815 3.617263 GCCAAGGAAAGACACTACGTATG 59.383 47.826 0.00 0.00 0.00 2.39
2698 11816 4.817517 CCAAGGAAAGACACTACGTATGT 58.182 43.478 9.46 9.46 0.00 2.29
2699 11817 4.625742 CCAAGGAAAGACACTACGTATGTG 59.374 45.833 17.89 17.89 40.87 3.21
2700 11818 5.466819 CAAGGAAAGACACTACGTATGTGA 58.533 41.667 23.20 0.00 38.65 3.58
2701 11819 5.916661 AGGAAAGACACTACGTATGTGAT 57.083 39.130 23.20 13.13 38.65 3.06
2702 11820 5.651530 AGGAAAGACACTACGTATGTGATG 58.348 41.667 23.20 9.58 38.65 3.07
2703 11821 4.267928 GGAAAGACACTACGTATGTGATGC 59.732 45.833 23.20 14.94 38.65 3.91
2704 11822 4.720649 AAGACACTACGTATGTGATGCT 57.279 40.909 23.20 16.24 38.65 3.79
2705 11823 5.830000 AAGACACTACGTATGTGATGCTA 57.170 39.130 23.20 0.00 38.65 3.49
2706 11824 6.392625 AAGACACTACGTATGTGATGCTAT 57.607 37.500 23.20 7.43 38.65 2.97
2707 11825 6.003234 AGACACTACGTATGTGATGCTATC 57.997 41.667 23.20 13.45 38.65 2.08
2708 11826 5.531287 AGACACTACGTATGTGATGCTATCA 59.469 40.000 23.20 0.00 38.65 2.15
2709 11827 6.039382 AGACACTACGTATGTGATGCTATCAA 59.961 38.462 23.20 0.00 41.69 2.57
2710 11828 6.209361 ACACTACGTATGTGATGCTATCAAG 58.791 40.000 23.20 1.67 41.69 3.02
2711 11829 6.039382 ACACTACGTATGTGATGCTATCAAGA 59.961 38.462 23.20 0.00 41.69 3.02
2712 11830 7.087007 CACTACGTATGTGATGCTATCAAGAT 58.913 38.462 15.72 0.00 41.69 2.40
2713 11831 7.596621 CACTACGTATGTGATGCTATCAAGATT 59.403 37.037 15.72 0.00 41.69 2.40
2714 11832 8.144478 ACTACGTATGTGATGCTATCAAGATTT 58.856 33.333 0.00 0.00 41.69 2.17
2715 11833 7.182361 ACGTATGTGATGCTATCAAGATTTG 57.818 36.000 0.00 0.00 41.69 2.32
2716 11834 6.763135 ACGTATGTGATGCTATCAAGATTTGT 59.237 34.615 0.00 0.00 41.69 2.83
2717 11835 7.042456 ACGTATGTGATGCTATCAAGATTTGTC 60.042 37.037 0.00 0.00 41.69 3.18
2718 11836 7.170489 CGTATGTGATGCTATCAAGATTTGTCT 59.830 37.037 1.17 0.00 41.69 3.41
2719 11837 7.876936 ATGTGATGCTATCAAGATTTGTCTT 57.123 32.000 1.17 0.00 41.69 3.01
2720 11838 8.969260 ATGTGATGCTATCAAGATTTGTCTTA 57.031 30.769 1.17 0.00 41.69 2.10
2721 11839 8.791327 TGTGATGCTATCAAGATTTGTCTTAA 57.209 30.769 1.17 0.00 41.69 1.85
2722 11840 9.399797 TGTGATGCTATCAAGATTTGTCTTAAT 57.600 29.630 1.17 0.00 41.69 1.40
2723 11841 9.875675 GTGATGCTATCAAGATTTGTCTTAATC 57.124 33.333 1.17 0.00 41.69 1.75
2724 11842 9.617523 TGATGCTATCAAGATTTGTCTTAATCA 57.382 29.630 0.00 0.00 36.11 2.57
2762 11880 7.874940 TCCATTTGCTAAAGTATCATACATGC 58.125 34.615 0.00 0.00 0.00 4.06
2763 11881 7.501892 TCCATTTGCTAAAGTATCATACATGCA 59.498 33.333 0.00 0.00 0.00 3.96
2764 11882 7.592533 CCATTTGCTAAAGTATCATACATGCAC 59.407 37.037 0.00 0.00 0.00 4.57
2765 11883 7.622893 TTTGCTAAAGTATCATACATGCACA 57.377 32.000 0.00 0.00 0.00 4.57
2766 11884 7.622893 TTGCTAAAGTATCATACATGCACAA 57.377 32.000 0.00 0.00 0.00 3.33
2767 11885 7.250445 TGCTAAAGTATCATACATGCACAAG 57.750 36.000 0.00 0.00 0.00 3.16
2768 11886 7.047271 TGCTAAAGTATCATACATGCACAAGA 58.953 34.615 0.00 0.00 0.00 3.02
2769 11887 7.011389 TGCTAAAGTATCATACATGCACAAGAC 59.989 37.037 0.00 0.00 0.00 3.01
2770 11888 7.011389 GCTAAAGTATCATACATGCACAAGACA 59.989 37.037 0.00 0.00 0.00 3.41
2771 11889 7.870509 AAAGTATCATACATGCACAAGACAT 57.129 32.000 0.00 0.00 0.00 3.06
2808 11926 9.732130 ATATAAAGAGATCCTTAGTTGAATGCC 57.268 33.333 0.00 0.00 34.00 4.40
2809 11927 4.429854 AGAGATCCTTAGTTGAATGCCC 57.570 45.455 0.00 0.00 0.00 5.36
2810 11928 3.782523 AGAGATCCTTAGTTGAATGCCCA 59.217 43.478 0.00 0.00 0.00 5.36
2811 11929 4.414846 AGAGATCCTTAGTTGAATGCCCAT 59.585 41.667 0.00 0.00 0.00 4.00
2812 11930 4.467769 AGATCCTTAGTTGAATGCCCATG 58.532 43.478 0.00 0.00 0.00 3.66
2813 11931 2.378038 TCCTTAGTTGAATGCCCATGC 58.622 47.619 0.00 0.00 38.26 4.06
2814 11932 1.066002 CCTTAGTTGAATGCCCATGCG 59.934 52.381 0.00 0.00 41.78 4.73
2815 11933 1.745087 CTTAGTTGAATGCCCATGCGT 59.255 47.619 0.00 0.00 41.78 5.24
2817 11935 0.244450 AGTTGAATGCCCATGCGTTG 59.756 50.000 0.00 0.00 46.55 4.10
2818 11936 1.079956 TTGAATGCCCATGCGTTGC 60.080 52.632 0.00 0.00 46.55 4.17
2819 11937 1.534336 TTGAATGCCCATGCGTTGCT 61.534 50.000 0.00 0.00 46.55 3.91
2820 11938 0.679321 TGAATGCCCATGCGTTGCTA 60.679 50.000 0.00 0.00 46.55 3.49
2821 11939 0.670162 GAATGCCCATGCGTTGCTAT 59.330 50.000 0.00 0.00 46.55 2.97
2822 11940 0.386476 AATGCCCATGCGTTGCTATG 59.614 50.000 0.00 0.00 44.90 2.23
2823 11941 2.026590 GCCCATGCGTTGCTATGC 59.973 61.111 5.33 5.33 36.80 3.14
2856 11974 9.612620 AAAAATCAATTGATCGTGACTTAACTC 57.387 29.630 20.95 0.00 32.75 3.01
2857 11975 8.553459 AAATCAATTGATCGTGACTTAACTCT 57.447 30.769 20.95 0.00 32.75 3.24
2858 11976 7.763172 ATCAATTGATCGTGACTTAACTCTC 57.237 36.000 15.36 0.00 0.00 3.20
2859 11977 6.925211 TCAATTGATCGTGACTTAACTCTCT 58.075 36.000 3.38 0.00 0.00 3.10
2860 11978 7.378966 TCAATTGATCGTGACTTAACTCTCTT 58.621 34.615 3.38 0.00 0.00 2.85
2861 11979 7.329471 TCAATTGATCGTGACTTAACTCTCTTG 59.671 37.037 3.38 0.00 0.00 3.02
2862 11980 5.707242 TGATCGTGACTTAACTCTCTTGT 57.293 39.130 0.00 0.00 0.00 3.16
2863 11981 5.700846 TGATCGTGACTTAACTCTCTTGTC 58.299 41.667 0.00 0.00 0.00 3.18
2864 11982 5.240844 TGATCGTGACTTAACTCTCTTGTCA 59.759 40.000 0.00 0.00 35.62 3.58
2867 11985 4.308265 GTGACTTAACTCTCTTGTCACCC 58.692 47.826 11.95 0.00 46.66 4.61
2868 11986 3.964688 TGACTTAACTCTCTTGTCACCCA 59.035 43.478 0.00 0.00 33.45 4.51
2869 11987 4.407621 TGACTTAACTCTCTTGTCACCCAA 59.592 41.667 0.00 0.00 33.45 4.12
2882 12000 7.687941 CTTGTCACCCAAGTAACATAAATCT 57.312 36.000 0.00 0.00 44.64 2.40
2883 12001 8.786826 CTTGTCACCCAAGTAACATAAATCTA 57.213 34.615 0.00 0.00 44.64 1.98
2884 12002 8.556213 TTGTCACCCAAGTAACATAAATCTAC 57.444 34.615 0.00 0.00 0.00 2.59
2885 12003 7.913789 TGTCACCCAAGTAACATAAATCTACT 58.086 34.615 0.00 0.00 0.00 2.57
2886 12004 8.380099 TGTCACCCAAGTAACATAAATCTACTT 58.620 33.333 0.00 0.00 36.53 2.24
2887 12005 9.227777 GTCACCCAAGTAACATAAATCTACTTT 57.772 33.333 0.00 0.00 34.42 2.66
2902 12020 7.639162 AATCTACTTTAGTCAAGACAACACG 57.361 36.000 2.72 0.00 36.21 4.49
2903 12021 5.526115 TCTACTTTAGTCAAGACAACACGG 58.474 41.667 2.72 0.00 36.21 4.94
2904 12022 3.463944 ACTTTAGTCAAGACAACACGGG 58.536 45.455 2.72 0.00 36.21 5.28
2905 12023 3.133362 ACTTTAGTCAAGACAACACGGGA 59.867 43.478 0.00 0.00 36.21 5.14
2906 12024 2.806608 TAGTCAAGACAACACGGGAC 57.193 50.000 0.00 0.00 0.00 4.46
2907 12025 0.828022 AGTCAAGACAACACGGGACA 59.172 50.000 0.00 0.00 0.00 4.02
2908 12026 1.208535 AGTCAAGACAACACGGGACAA 59.791 47.619 0.00 0.00 0.00 3.18
2909 12027 2.011222 GTCAAGACAACACGGGACAAA 58.989 47.619 0.00 0.00 0.00 2.83
2910 12028 2.420722 GTCAAGACAACACGGGACAAAA 59.579 45.455 0.00 0.00 0.00 2.44
2911 12029 2.680841 TCAAGACAACACGGGACAAAAG 59.319 45.455 0.00 0.00 0.00 2.27
2912 12030 2.413310 AGACAACACGGGACAAAAGT 57.587 45.000 0.00 0.00 0.00 2.66
2913 12031 2.285977 AGACAACACGGGACAAAAGTC 58.714 47.619 0.00 0.00 0.00 3.01
2914 12032 2.093128 AGACAACACGGGACAAAAGTCT 60.093 45.455 0.00 0.00 0.00 3.24
2915 12033 2.285977 ACAACACGGGACAAAAGTCTC 58.714 47.619 0.00 0.00 0.00 3.36
2916 12034 2.285083 CAACACGGGACAAAAGTCTCA 58.715 47.619 0.00 0.00 0.00 3.27
2917 12035 2.878406 CAACACGGGACAAAAGTCTCAT 59.122 45.455 0.00 0.00 0.00 2.90
2918 12036 4.062293 CAACACGGGACAAAAGTCTCATA 58.938 43.478 0.00 0.00 0.00 2.15
2919 12037 4.553330 ACACGGGACAAAAGTCTCATAT 57.447 40.909 0.00 0.00 0.00 1.78
2920 12038 4.253685 ACACGGGACAAAAGTCTCATATG 58.746 43.478 0.00 0.00 0.00 1.78
2921 12039 4.020573 ACACGGGACAAAAGTCTCATATGA 60.021 41.667 5.07 5.07 0.00 2.15
2922 12040 4.935205 CACGGGACAAAAGTCTCATATGAA 59.065 41.667 6.90 0.00 0.00 2.57
2923 12041 5.063944 CACGGGACAAAAGTCTCATATGAAG 59.936 44.000 6.90 1.67 0.00 3.02
2924 12042 5.046591 ACGGGACAAAAGTCTCATATGAAGA 60.047 40.000 6.90 4.04 0.00 2.87
2925 12043 5.874810 CGGGACAAAAGTCTCATATGAAGAA 59.125 40.000 6.90 0.00 0.00 2.52
2926 12044 6.371548 CGGGACAAAAGTCTCATATGAAGAAA 59.628 38.462 6.90 0.00 0.00 2.52
2927 12045 7.066284 CGGGACAAAAGTCTCATATGAAGAAAT 59.934 37.037 6.90 0.00 0.00 2.17
2928 12046 9.396022 GGGACAAAAGTCTCATATGAAGAAATA 57.604 33.333 6.90 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 2.099756 TGGTCTGTCGTCAGCATATCTG 59.900 50.000 4.68 0.00 44.21 2.90
59 60 3.797353 CACCTGGGCCCGTGCTAT 61.797 66.667 19.37 0.00 37.74 2.97
144 203 4.321304 GGTATACTCTCACGCATGCACTAT 60.321 45.833 19.57 0.00 0.00 2.12
147 206 2.128035 GGTATACTCTCACGCATGCAC 58.872 52.381 19.57 3.63 0.00 4.57
180 247 7.889873 TTATTTTCTTTCAGAGGTTTCACCA 57.110 32.000 0.00 0.00 41.95 4.17
181 248 7.867909 CCTTTATTTTCTTTCAGAGGTTTCACC 59.132 37.037 0.00 0.00 38.99 4.02
182 249 8.630037 TCCTTTATTTTCTTTCAGAGGTTTCAC 58.370 33.333 0.00 0.00 0.00 3.18
183 250 8.760980 TCCTTTATTTTCTTTCAGAGGTTTCA 57.239 30.769 0.00 0.00 0.00 2.69
184 251 9.631452 CATCCTTTATTTTCTTTCAGAGGTTTC 57.369 33.333 0.00 0.00 0.00 2.78
185 252 8.588472 CCATCCTTTATTTTCTTTCAGAGGTTT 58.412 33.333 0.00 0.00 0.00 3.27
186 253 7.179160 CCCATCCTTTATTTTCTTTCAGAGGTT 59.821 37.037 0.00 0.00 0.00 3.50
187 254 6.665248 CCCATCCTTTATTTTCTTTCAGAGGT 59.335 38.462 0.00 0.00 0.00 3.85
188 255 6.891908 TCCCATCCTTTATTTTCTTTCAGAGG 59.108 38.462 0.00 0.00 0.00 3.69
189 256 7.944729 TCCCATCCTTTATTTTCTTTCAGAG 57.055 36.000 0.00 0.00 0.00 3.35
190 257 8.115384 TCATCCCATCCTTTATTTTCTTTCAGA 58.885 33.333 0.00 0.00 0.00 3.27
271 338 1.078426 CCCGACGGCTGAAGGAAAT 60.078 57.895 8.86 0.00 0.00 2.17
272 339 2.345991 CCCGACGGCTGAAGGAAA 59.654 61.111 8.86 0.00 0.00 3.13
298 365 4.104383 ACAAGATATATGGCAACCCCTG 57.896 45.455 0.00 0.00 0.00 4.45
299 366 4.079212 ACAACAAGATATATGGCAACCCCT 60.079 41.667 0.00 0.00 0.00 4.79
300 367 4.215109 ACAACAAGATATATGGCAACCCC 58.785 43.478 0.00 0.00 0.00 4.95
301 368 4.024048 CGACAACAAGATATATGGCAACCC 60.024 45.833 0.00 0.00 0.00 4.11
302 369 4.574828 ACGACAACAAGATATATGGCAACC 59.425 41.667 0.00 0.00 0.00 3.77
303 370 5.556382 CGACGACAACAAGATATATGGCAAC 60.556 44.000 0.00 0.00 0.00 4.17
304 371 4.506288 CGACGACAACAAGATATATGGCAA 59.494 41.667 0.00 0.00 0.00 4.52
305 372 4.048504 CGACGACAACAAGATATATGGCA 58.951 43.478 0.00 0.00 0.00 4.92
306 373 4.049186 ACGACGACAACAAGATATATGGC 58.951 43.478 0.00 0.00 0.00 4.40
307 374 9.222916 GATATACGACGACAACAAGATATATGG 57.777 37.037 0.00 0.00 0.00 2.74
308 375 8.934947 CGATATACGACGACAACAAGATATATG 58.065 37.037 0.00 0.00 45.77 1.78
309 376 8.663025 ACGATATACGACGACAACAAGATATAT 58.337 33.333 0.00 0.00 45.77 0.86
310 377 8.021955 ACGATATACGACGACAACAAGATATA 57.978 34.615 0.00 0.00 45.77 0.86
311 378 6.895898 ACGATATACGACGACAACAAGATAT 58.104 36.000 0.00 0.00 45.77 1.63
312 379 6.291067 ACGATATACGACGACAACAAGATA 57.709 37.500 0.00 0.00 45.77 1.98
371 438 0.445043 CATGTGGTCACAGTGCATCG 59.555 55.000 9.72 0.00 45.48 3.84
409 481 5.581085 ACGACAACAGCTGAAGGAAATATAC 59.419 40.000 23.35 0.00 0.00 1.47
426 499 0.110823 GCATCAACCACGACGACAAC 60.111 55.000 0.00 0.00 0.00 3.32
563 637 1.340308 TGATGGCAGGGATGACAACAG 60.340 52.381 0.00 0.00 0.00 3.16
574 648 1.890979 GTGGATCGCTGATGGCAGG 60.891 63.158 0.00 0.00 42.53 4.85
589 663 6.142818 TGTTCTAGAAATTGTGGTTTGTGG 57.857 37.500 6.78 0.00 0.00 4.17
590 664 6.697019 CCTTGTTCTAGAAATTGTGGTTTGTG 59.303 38.462 6.78 0.00 0.00 3.33
591 665 6.605594 TCCTTGTTCTAGAAATTGTGGTTTGT 59.394 34.615 6.78 0.00 0.00 2.83
592 666 7.038154 TCCTTGTTCTAGAAATTGTGGTTTG 57.962 36.000 6.78 0.00 0.00 2.93
593 667 7.654022 TTCCTTGTTCTAGAAATTGTGGTTT 57.346 32.000 6.78 0.00 0.00 3.27
594 668 7.839680 ATTCCTTGTTCTAGAAATTGTGGTT 57.160 32.000 6.78 0.00 0.00 3.67
595 669 8.960591 CATATTCCTTGTTCTAGAAATTGTGGT 58.039 33.333 6.78 0.00 0.00 4.16
633 726 6.461509 CCAGATTTTTAGGGATAACCACATGC 60.462 42.308 0.00 0.00 43.89 4.06
640 733 8.349568 AGTTGTTCCAGATTTTTAGGGATAAC 57.650 34.615 0.00 0.00 31.97 1.89
823 1857 3.586892 ACCTCGACTTTTTAGCTAGTGC 58.413 45.455 0.00 0.00 40.05 4.40
842 1876 4.579340 GCCTAAGGAAATAACAAGGCTACC 59.421 45.833 3.95 0.00 44.85 3.18
906 3291 2.172293 GAGGCCTTGGATGTTGATCTCT 59.828 50.000 6.77 0.00 0.00 3.10
1930 4374 3.181499 CGCGGAGAAACATCTAGTACTGT 60.181 47.826 5.39 0.00 0.00 3.55
2044 4512 4.311606 TGCTGAAACTGAAAGCGTATACA 58.688 39.130 3.32 0.00 39.88 2.29
2135 8458 5.480772 CACTATATTATGGAACGGAGGGAGT 59.519 44.000 0.00 0.00 0.00 3.85
2136 8459 5.480772 ACACTATATTATGGAACGGAGGGAG 59.519 44.000 0.00 0.00 0.00 4.30
2137 8460 5.399991 ACACTATATTATGGAACGGAGGGA 58.600 41.667 0.00 0.00 0.00 4.20
2138 8461 5.480772 AGACACTATATTATGGAACGGAGGG 59.519 44.000 0.00 0.00 0.00 4.30
2139 8462 6.591750 AGACACTATATTATGGAACGGAGG 57.408 41.667 0.00 0.00 0.00 4.30
2156 8479 9.066892 TGACTTTTGCAAAAATCTATAGACACT 57.933 29.630 27.69 1.15 0.00 3.55
2157 8480 9.677567 TTGACTTTTGCAAAAATCTATAGACAC 57.322 29.630 27.69 11.98 0.00 3.67
2165 8488 9.160496 TGTAATGTTTGACTTTTGCAAAAATCT 57.840 25.926 27.69 13.35 37.03 2.40
2166 8489 9.766277 TTGTAATGTTTGACTTTTGCAAAAATC 57.234 25.926 22.90 22.90 37.03 2.17
2168 8491 9.387123 GTTTGTAATGTTTGACTTTTGCAAAAA 57.613 25.926 23.92 8.29 37.03 1.94
2169 8492 8.778358 AGTTTGTAATGTTTGACTTTTGCAAAA 58.222 25.926 22.61 22.61 37.03 2.44
2170 8493 8.316640 AGTTTGTAATGTTTGACTTTTGCAAA 57.683 26.923 8.05 8.05 33.22 3.68
2171 8494 7.897575 AGTTTGTAATGTTTGACTTTTGCAA 57.102 28.000 0.00 0.00 0.00 4.08
2172 8495 7.897575 AAGTTTGTAATGTTTGACTTTTGCA 57.102 28.000 0.00 0.00 0.00 4.08
2173 8496 8.439286 TCAAAGTTTGTAATGTTTGACTTTTGC 58.561 29.630 15.08 0.00 35.75 3.68
2223 8774 7.933033 TGATGTGCATTTGCTATTCTAGATGTA 59.067 33.333 3.94 0.00 42.66 2.29
2224 8775 6.769341 TGATGTGCATTTGCTATTCTAGATGT 59.231 34.615 3.94 0.00 42.66 3.06
2225 8776 7.198306 TGATGTGCATTTGCTATTCTAGATG 57.802 36.000 3.94 0.00 42.66 2.90
2226 8777 7.997773 ATGATGTGCATTTGCTATTCTAGAT 57.002 32.000 3.94 0.00 42.66 1.98
2227 8778 7.499895 TCAATGATGTGCATTTGCTATTCTAGA 59.500 33.333 3.94 0.00 44.68 2.43
2229 8780 7.571080 TCAATGATGTGCATTTGCTATTCTA 57.429 32.000 3.94 0.00 44.68 2.10
2231 8782 7.709269 ATTCAATGATGTGCATTTGCTATTC 57.291 32.000 3.94 0.00 44.68 1.75
2232 8783 8.198778 TGTATTCAATGATGTGCATTTGCTATT 58.801 29.630 3.94 0.00 44.68 1.73
2233 8784 7.718525 TGTATTCAATGATGTGCATTTGCTAT 58.281 30.769 3.94 0.00 44.68 2.97
2235 8786 5.968254 TGTATTCAATGATGTGCATTTGCT 58.032 33.333 3.94 0.00 44.68 3.91
2236 8787 6.477360 TGATGTATTCAATGATGTGCATTTGC 59.523 34.615 0.00 0.00 44.68 3.68
2238 8789 8.417884 TCATGATGTATTCAATGATGTGCATTT 58.582 29.630 0.00 0.00 44.68 2.32
2242 8793 6.967135 ACTCATGATGTATTCAATGATGTGC 58.033 36.000 0.00 0.00 38.03 4.57
2283 8834 9.249457 CGTCTACATCTACAATATCAAACATGT 57.751 33.333 0.00 0.00 0.00 3.21
2284 8835 8.703336 CCGTCTACATCTACAATATCAAACATG 58.297 37.037 0.00 0.00 0.00 3.21
2285 8836 8.421784 ACCGTCTACATCTACAATATCAAACAT 58.578 33.333 0.00 0.00 0.00 2.71
2286 8837 7.778083 ACCGTCTACATCTACAATATCAAACA 58.222 34.615 0.00 0.00 0.00 2.83
2287 8838 8.644318 AACCGTCTACATCTACAATATCAAAC 57.356 34.615 0.00 0.00 0.00 2.93
2288 8839 9.661563 AAAACCGTCTACATCTACAATATCAAA 57.338 29.630 0.00 0.00 0.00 2.69
2289 8840 9.309516 GAAAACCGTCTACATCTACAATATCAA 57.690 33.333 0.00 0.00 0.00 2.57
2290 8841 8.692710 AGAAAACCGTCTACATCTACAATATCA 58.307 33.333 0.00 0.00 0.00 2.15
2292 8843 8.692710 TGAGAAAACCGTCTACATCTACAATAT 58.307 33.333 0.00 0.00 0.00 1.28
2294 8845 6.931838 TGAGAAAACCGTCTACATCTACAAT 58.068 36.000 0.00 0.00 0.00 2.71
2295 8846 6.335471 TGAGAAAACCGTCTACATCTACAA 57.665 37.500 0.00 0.00 0.00 2.41
2296 8847 5.970317 TGAGAAAACCGTCTACATCTACA 57.030 39.130 0.00 0.00 0.00 2.74
2298 8849 7.338703 AGTGTATGAGAAAACCGTCTACATCTA 59.661 37.037 0.00 0.00 0.00 1.98
2299 8850 6.153000 AGTGTATGAGAAAACCGTCTACATCT 59.847 38.462 0.00 0.00 0.00 2.90
2300 8851 6.331061 AGTGTATGAGAAAACCGTCTACATC 58.669 40.000 0.00 0.00 0.00 3.06
2301 8852 6.282199 AGTGTATGAGAAAACCGTCTACAT 57.718 37.500 0.00 0.00 0.00 2.29
2302 8853 5.717078 AGTGTATGAGAAAACCGTCTACA 57.283 39.130 0.00 0.00 0.00 2.74
2303 8854 6.154445 TCAAGTGTATGAGAAAACCGTCTAC 58.846 40.000 0.00 0.00 0.00 2.59
2305 8856 5.209818 TCAAGTGTATGAGAAAACCGTCT 57.790 39.130 0.00 0.00 0.00 4.18
2306 8857 5.637810 TGATCAAGTGTATGAGAAAACCGTC 59.362 40.000 0.00 0.00 31.76 4.79
2307 8858 5.547465 TGATCAAGTGTATGAGAAAACCGT 58.453 37.500 0.00 0.00 31.76 4.83
2308 8859 6.480524 TTGATCAAGTGTATGAGAAAACCG 57.519 37.500 3.38 0.00 31.76 4.44
2309 8860 7.875971 ACTTTGATCAAGTGTATGAGAAAACC 58.124 34.615 8.41 0.00 44.70 3.27
2312 8863 8.721478 GCTAACTTTGATCAAGTGTATGAGAAA 58.279 33.333 8.41 0.00 45.77 2.52
2313 8864 7.877612 TGCTAACTTTGATCAAGTGTATGAGAA 59.122 33.333 8.41 3.40 45.77 2.87
2314 8865 7.386059 TGCTAACTTTGATCAAGTGTATGAGA 58.614 34.615 8.41 0.00 45.77 3.27
2315 8866 7.601073 TGCTAACTTTGATCAAGTGTATGAG 57.399 36.000 8.41 3.98 45.77 2.90
2316 8867 7.977789 TTGCTAACTTTGATCAAGTGTATGA 57.022 32.000 8.41 1.76 45.77 2.15
2321 8872 9.033481 TCAAATTTTGCTAACTTTGATCAAGTG 57.967 29.630 17.77 8.41 45.77 3.16
2323 8874 9.252962 AGTCAAATTTTGCTAACTTTGATCAAG 57.747 29.630 22.14 5.87 41.75 3.02
2328 9257 7.232945 GCAAGTCAAATTTTGCTAACTTTGA 57.767 32.000 17.77 17.77 44.70 2.69
2344 9273 6.208402 TGCCTATAGATTTTTGTGCAAGTCAA 59.792 34.615 0.00 0.00 0.00 3.18
2348 9277 5.981315 CCATGCCTATAGATTTTTGTGCAAG 59.019 40.000 0.00 0.00 0.00 4.01
2349 9278 5.655974 TCCATGCCTATAGATTTTTGTGCAA 59.344 36.000 0.00 0.00 0.00 4.08
2350 9279 5.199723 TCCATGCCTATAGATTTTTGTGCA 58.800 37.500 0.00 0.00 0.00 4.57
2351 9280 5.278660 CCTCCATGCCTATAGATTTTTGTGC 60.279 44.000 0.00 0.00 0.00 4.57
2352 9281 5.242393 CCCTCCATGCCTATAGATTTTTGTG 59.758 44.000 0.00 0.00 0.00 3.33
2353 9282 5.134339 TCCCTCCATGCCTATAGATTTTTGT 59.866 40.000 0.00 0.00 0.00 2.83
2354 9283 5.634118 TCCCTCCATGCCTATAGATTTTTG 58.366 41.667 0.00 0.00 0.00 2.44
2355 9284 5.373854 ACTCCCTCCATGCCTATAGATTTTT 59.626 40.000 0.00 0.00 0.00 1.94
2356 9285 4.916424 ACTCCCTCCATGCCTATAGATTTT 59.084 41.667 0.00 0.00 0.00 1.82
2358 9287 4.153371 ACTCCCTCCATGCCTATAGATT 57.847 45.455 0.00 0.00 0.00 2.40
2359 9288 3.862600 ACTCCCTCCATGCCTATAGAT 57.137 47.619 0.00 0.00 0.00 1.98
2360 9289 3.663136 ACTACTCCCTCCATGCCTATAGA 59.337 47.826 0.00 0.00 0.00 1.98
2361 9290 4.054359 ACTACTCCCTCCATGCCTATAG 57.946 50.000 0.00 0.00 0.00 1.31
2363 9292 4.487282 TTACTACTCCCTCCATGCCTAT 57.513 45.455 0.00 0.00 0.00 2.57
2365 9294 2.868964 TTACTACTCCCTCCATGCCT 57.131 50.000 0.00 0.00 0.00 4.75
2366 9295 5.562298 TTATTTACTACTCCCTCCATGCC 57.438 43.478 0.00 0.00 0.00 4.40
2368 9297 7.011109 CGTTGTTTATTTACTACTCCCTCCATG 59.989 40.741 0.00 0.00 0.00 3.66
2370 9299 6.400568 CGTTGTTTATTTACTACTCCCTCCA 58.599 40.000 0.00 0.00 0.00 3.86
2371 9300 5.814188 CCGTTGTTTATTTACTACTCCCTCC 59.186 44.000 0.00 0.00 0.00 4.30
2372 9301 6.533012 GTCCGTTGTTTATTTACTACTCCCTC 59.467 42.308 0.00 0.00 0.00 4.30
2374 9303 6.312180 CAGTCCGTTGTTTATTTACTACTCCC 59.688 42.308 0.00 0.00 0.00 4.30
2375 9304 6.312180 CCAGTCCGTTGTTTATTTACTACTCC 59.688 42.308 0.00 0.00 0.00 3.85
2376 9305 6.870439 ACCAGTCCGTTGTTTATTTACTACTC 59.130 38.462 0.00 0.00 0.00 2.59
2437 11524 7.067981 GCTTTGGATCCATTCTGATCTTTAGTT 59.932 37.037 17.06 0.00 40.80 2.24
2515 11603 0.035036 TGGTACGATTTGACGGCCAA 59.965 50.000 2.24 0.00 38.57 4.52
2602 11720 1.068333 ACGCACAGGCATTTTTGCTAG 60.068 47.619 0.00 0.00 41.24 3.42
2605 11723 0.232816 CAACGCACAGGCATTTTTGC 59.767 50.000 0.00 0.00 41.24 3.68
2606 11724 0.232816 GCAACGCACAGGCATTTTTG 59.767 50.000 0.00 0.00 41.24 2.44
2608 11726 0.033781 ATGCAACGCACAGGCATTTT 59.966 45.000 0.00 0.00 45.34 1.82
2609 11727 1.667151 ATGCAACGCACAGGCATTT 59.333 47.368 0.00 0.00 45.34 2.32
2610 11728 3.368822 ATGCAACGCACAGGCATT 58.631 50.000 0.00 0.00 45.34 3.56
2612 11730 3.725459 CGATGCAACGCACAGGCA 61.725 61.111 2.61 0.00 43.04 4.75
2613 11731 4.465512 CCGATGCAACGCACAGGC 62.466 66.667 11.32 0.00 43.04 4.85
2614 11732 2.244436 CTTCCGATGCAACGCACAGG 62.244 60.000 11.32 5.47 43.04 4.00
2615 11733 1.133253 CTTCCGATGCAACGCACAG 59.867 57.895 11.32 2.28 43.04 3.66
2616 11734 0.882484 TTCTTCCGATGCAACGCACA 60.882 50.000 11.32 0.00 43.04 4.57
2617 11735 0.237235 TTTCTTCCGATGCAACGCAC 59.763 50.000 11.32 0.00 43.04 5.34
2618 11736 0.947960 TTTTCTTCCGATGCAACGCA 59.052 45.000 11.32 0.00 44.86 5.24
2619 11737 2.044888 TTTTTCTTCCGATGCAACGC 57.955 45.000 11.32 0.00 0.00 4.84
2638 11756 7.148103 CCCACAAACCAAACATGAAAGATTTTT 60.148 33.333 0.00 0.00 0.00 1.94
2639 11757 6.318396 CCCACAAACCAAACATGAAAGATTTT 59.682 34.615 0.00 0.00 0.00 1.82
2640 11758 5.821995 CCCACAAACCAAACATGAAAGATTT 59.178 36.000 0.00 0.00 0.00 2.17
2641 11759 5.104569 ACCCACAAACCAAACATGAAAGATT 60.105 36.000 0.00 0.00 0.00 2.40
2642 11760 4.408596 ACCCACAAACCAAACATGAAAGAT 59.591 37.500 0.00 0.00 0.00 2.40
2643 11761 3.772025 ACCCACAAACCAAACATGAAAGA 59.228 39.130 0.00 0.00 0.00 2.52
2644 11762 4.135747 ACCCACAAACCAAACATGAAAG 57.864 40.909 0.00 0.00 0.00 2.62
2645 11763 5.129485 ACATACCCACAAACCAAACATGAAA 59.871 36.000 0.00 0.00 0.00 2.69
2646 11764 4.651503 ACATACCCACAAACCAAACATGAA 59.348 37.500 0.00 0.00 0.00 2.57
2647 11765 4.038522 CACATACCCACAAACCAAACATGA 59.961 41.667 0.00 0.00 0.00 3.07
2648 11766 4.038522 TCACATACCCACAAACCAAACATG 59.961 41.667 0.00 0.00 0.00 3.21
2649 11767 4.219115 TCACATACCCACAAACCAAACAT 58.781 39.130 0.00 0.00 0.00 2.71
2650 11768 3.632333 TCACATACCCACAAACCAAACA 58.368 40.909 0.00 0.00 0.00 2.83
2651 11769 3.634910 ACTCACATACCCACAAACCAAAC 59.365 43.478 0.00 0.00 0.00 2.93
2652 11770 3.904717 ACTCACATACCCACAAACCAAA 58.095 40.909 0.00 0.00 0.00 3.28
2653 11771 3.586470 ACTCACATACCCACAAACCAA 57.414 42.857 0.00 0.00 0.00 3.67
2654 11772 3.218453 CAACTCACATACCCACAAACCA 58.782 45.455 0.00 0.00 0.00 3.67
2655 11773 2.030274 GCAACTCACATACCCACAAACC 60.030 50.000 0.00 0.00 0.00 3.27
2656 11774 2.030274 GGCAACTCACATACCCACAAAC 60.030 50.000 0.00 0.00 0.00 2.93
2657 11775 2.235016 GGCAACTCACATACCCACAAA 58.765 47.619 0.00 0.00 0.00 2.83
2658 11776 1.143889 TGGCAACTCACATACCCACAA 59.856 47.619 0.00 0.00 37.61 3.33
2659 11777 0.767998 TGGCAACTCACATACCCACA 59.232 50.000 0.00 0.00 37.61 4.17
2660 11778 1.812571 CTTGGCAACTCACATACCCAC 59.187 52.381 0.00 0.00 37.61 4.61
2661 11779 1.271871 CCTTGGCAACTCACATACCCA 60.272 52.381 0.00 0.00 37.61 4.51
2662 11780 1.004277 TCCTTGGCAACTCACATACCC 59.996 52.381 0.00 0.00 37.61 3.69
2663 11781 2.489938 TCCTTGGCAACTCACATACC 57.510 50.000 0.00 0.00 37.61 2.73
2664 11782 4.072131 TCTTTCCTTGGCAACTCACATAC 58.928 43.478 0.00 0.00 37.61 2.39
2665 11783 4.072131 GTCTTTCCTTGGCAACTCACATA 58.928 43.478 0.00 0.00 37.61 2.29
2666 11784 2.887152 GTCTTTCCTTGGCAACTCACAT 59.113 45.455 0.00 0.00 37.61 3.21
2667 11785 2.297701 GTCTTTCCTTGGCAACTCACA 58.702 47.619 0.00 0.00 37.61 3.58
2668 11786 2.033424 GTGTCTTTCCTTGGCAACTCAC 59.967 50.000 0.00 0.00 37.61 3.51
2669 11787 2.092429 AGTGTCTTTCCTTGGCAACTCA 60.092 45.455 0.00 0.00 37.61 3.41
2670 11788 2.576615 AGTGTCTTTCCTTGGCAACTC 58.423 47.619 0.00 0.00 37.61 3.01
2671 11789 2.736670 AGTGTCTTTCCTTGGCAACT 57.263 45.000 0.00 0.00 37.61 3.16
2672 11790 2.223377 CGTAGTGTCTTTCCTTGGCAAC 59.777 50.000 0.00 0.00 0.00 4.17
2673 11791 2.158871 ACGTAGTGTCTTTCCTTGGCAA 60.159 45.455 0.00 0.00 42.51 4.52
2674 11792 1.414919 ACGTAGTGTCTTTCCTTGGCA 59.585 47.619 0.00 0.00 42.51 4.92
2675 11793 2.165319 ACGTAGTGTCTTTCCTTGGC 57.835 50.000 0.00 0.00 42.51 4.52
2676 11794 4.625742 CACATACGTAGTGTCTTTCCTTGG 59.374 45.833 13.66 0.00 45.73 3.61
2677 11795 5.466819 TCACATACGTAGTGTCTTTCCTTG 58.533 41.667 18.39 4.57 45.73 3.61
2678 11796 5.717078 TCACATACGTAGTGTCTTTCCTT 57.283 39.130 18.39 0.00 45.73 3.36
2679 11797 5.651530 CATCACATACGTAGTGTCTTTCCT 58.348 41.667 18.39 0.00 45.73 3.36
2680 11798 4.267928 GCATCACATACGTAGTGTCTTTCC 59.732 45.833 18.39 5.75 45.73 3.13
2681 11799 5.103000 AGCATCACATACGTAGTGTCTTTC 58.897 41.667 18.39 9.32 45.73 2.62
2682 11800 5.073311 AGCATCACATACGTAGTGTCTTT 57.927 39.130 18.39 6.92 45.73 2.52
2683 11801 4.720649 AGCATCACATACGTAGTGTCTT 57.279 40.909 18.39 7.86 45.73 3.01
2684 11802 5.531287 TGATAGCATCACATACGTAGTGTCT 59.469 40.000 18.39 16.07 36.10 3.41
2685 11803 5.758924 TGATAGCATCACATACGTAGTGTC 58.241 41.667 18.39 11.51 36.10 3.67
2686 11804 5.767816 TGATAGCATCACATACGTAGTGT 57.232 39.130 18.39 12.43 36.10 3.55
2687 11805 6.438763 TCTTGATAGCATCACATACGTAGTG 58.561 40.000 15.01 15.01 39.70 2.74
2688 11806 6.635030 TCTTGATAGCATCACATACGTAGT 57.365 37.500 0.08 0.00 41.80 2.73
2689 11807 8.430828 CAAATCTTGATAGCATCACATACGTAG 58.569 37.037 0.08 0.00 39.39 3.51
2690 11808 7.926018 ACAAATCTTGATAGCATCACATACGTA 59.074 33.333 0.00 0.00 39.39 3.57
2691 11809 6.763135 ACAAATCTTGATAGCATCACATACGT 59.237 34.615 0.00 0.00 39.39 3.57
2692 11810 7.170489 AGACAAATCTTGATAGCATCACATACG 59.830 37.037 0.00 0.00 39.39 3.06
2693 11811 8.375608 AGACAAATCTTGATAGCATCACATAC 57.624 34.615 0.00 0.00 39.39 2.39
2694 11812 8.969260 AAGACAAATCTTGATAGCATCACATA 57.031 30.769 0.00 0.00 43.86 2.29
2695 11813 7.876936 AAGACAAATCTTGATAGCATCACAT 57.123 32.000 0.00 0.00 43.86 3.21
2696 11814 8.791327 TTAAGACAAATCTTGATAGCATCACA 57.209 30.769 0.00 0.00 45.17 3.58
2697 11815 9.875675 GATTAAGACAAATCTTGATAGCATCAC 57.124 33.333 0.00 0.00 45.17 3.06
2698 11816 9.617523 TGATTAAGACAAATCTTGATAGCATCA 57.382 29.630 0.00 0.00 45.17 3.07
2736 11854 8.517878 GCATGTATGATACTTTAGCAAATGGAT 58.482 33.333 4.03 0.00 0.00 3.41
2737 11855 7.501892 TGCATGTATGATACTTTAGCAAATGGA 59.498 33.333 4.03 0.00 0.00 3.41
2738 11856 7.592533 GTGCATGTATGATACTTTAGCAAATGG 59.407 37.037 4.03 0.00 0.00 3.16
2739 11857 8.130469 TGTGCATGTATGATACTTTAGCAAATG 58.870 33.333 4.03 0.00 0.00 2.32
2740 11858 8.224389 TGTGCATGTATGATACTTTAGCAAAT 57.776 30.769 4.03 0.00 0.00 2.32
2741 11859 7.622893 TGTGCATGTATGATACTTTAGCAAA 57.377 32.000 4.03 1.87 0.00 3.68
2742 11860 7.552330 TCTTGTGCATGTATGATACTTTAGCAA 59.448 33.333 4.03 3.93 0.00 3.91
2743 11861 7.011389 GTCTTGTGCATGTATGATACTTTAGCA 59.989 37.037 4.03 6.05 0.00 3.49
2744 11862 7.011389 TGTCTTGTGCATGTATGATACTTTAGC 59.989 37.037 4.03 3.71 0.00 3.09
2745 11863 8.424274 TGTCTTGTGCATGTATGATACTTTAG 57.576 34.615 4.03 0.00 0.00 1.85
2746 11864 8.829612 CATGTCTTGTGCATGTATGATACTTTA 58.170 33.333 4.03 0.00 38.96 1.85
2747 11865 7.680350 GCATGTCTTGTGCATGTATGATACTTT 60.680 37.037 4.03 0.00 43.93 2.66
2748 11866 6.238566 GCATGTCTTGTGCATGTATGATACTT 60.239 38.462 4.03 0.00 43.93 2.24
2749 11867 5.237996 GCATGTCTTGTGCATGTATGATACT 59.762 40.000 4.03 0.00 43.93 2.12
2750 11868 5.007921 TGCATGTCTTGTGCATGTATGATAC 59.992 40.000 0.00 0.00 46.76 2.24
2751 11869 5.124645 TGCATGTCTTGTGCATGTATGATA 58.875 37.500 0.00 0.00 46.76 2.15
2752 11870 3.949113 TGCATGTCTTGTGCATGTATGAT 59.051 39.130 0.00 0.00 46.76 2.45
2753 11871 3.345414 TGCATGTCTTGTGCATGTATGA 58.655 40.909 0.00 0.00 46.76 2.15
2754 11872 3.768468 TGCATGTCTTGTGCATGTATG 57.232 42.857 0.00 0.00 46.76 2.39
2782 11900 9.732130 GGCATTCAACTAAGGATCTCTTTATAT 57.268 33.333 2.37 0.00 36.93 0.86
2783 11901 8.157476 GGGCATTCAACTAAGGATCTCTTTATA 58.843 37.037 2.37 0.00 36.93 0.98
2784 11902 7.001073 GGGCATTCAACTAAGGATCTCTTTAT 58.999 38.462 2.37 0.00 36.93 1.40
2785 11903 6.069673 TGGGCATTCAACTAAGGATCTCTTTA 60.070 38.462 2.37 0.00 36.93 1.85
2786 11904 5.196695 GGGCATTCAACTAAGGATCTCTTT 58.803 41.667 2.37 0.00 36.93 2.52
2787 11905 4.228210 TGGGCATTCAACTAAGGATCTCTT 59.772 41.667 0.00 0.00 39.40 2.85
2788 11906 3.782523 TGGGCATTCAACTAAGGATCTCT 59.217 43.478 0.00 0.00 0.00 3.10
2789 11907 4.156455 TGGGCATTCAACTAAGGATCTC 57.844 45.455 0.00 0.00 0.00 2.75
2790 11908 4.467769 CATGGGCATTCAACTAAGGATCT 58.532 43.478 0.00 0.00 0.00 2.75
2791 11909 3.005155 GCATGGGCATTCAACTAAGGATC 59.995 47.826 0.00 0.00 40.72 3.36
2792 11910 2.961062 GCATGGGCATTCAACTAAGGAT 59.039 45.455 0.00 0.00 40.72 3.24
2793 11911 2.378038 GCATGGGCATTCAACTAAGGA 58.622 47.619 0.00 0.00 40.72 3.36
2794 11912 1.066002 CGCATGGGCATTCAACTAAGG 59.934 52.381 0.00 0.00 41.24 2.69
2795 11913 1.745087 ACGCATGGGCATTCAACTAAG 59.255 47.619 10.10 0.00 41.24 2.18
2796 11914 1.832883 ACGCATGGGCATTCAACTAA 58.167 45.000 10.10 0.00 41.24 2.24
2797 11915 1.472082 CAACGCATGGGCATTCAACTA 59.528 47.619 10.10 0.00 41.24 2.24
2798 11916 0.244450 CAACGCATGGGCATTCAACT 59.756 50.000 10.10 0.00 41.24 3.16
2799 11917 1.353609 GCAACGCATGGGCATTCAAC 61.354 55.000 10.10 0.00 41.24 3.18
2800 11918 1.079956 GCAACGCATGGGCATTCAA 60.080 52.632 10.10 0.00 41.24 2.69
2801 11919 0.679321 TAGCAACGCATGGGCATTCA 60.679 50.000 10.10 0.00 41.24 2.57
2802 11920 0.670162 ATAGCAACGCATGGGCATTC 59.330 50.000 10.10 0.00 41.24 2.67
2803 11921 0.386476 CATAGCAACGCATGGGCATT 59.614 50.000 10.10 0.00 41.24 3.56
2804 11922 2.035421 CATAGCAACGCATGGGCAT 58.965 52.632 10.10 0.00 41.24 4.40
2805 11923 2.773745 GCATAGCAACGCATGGGCA 61.774 57.895 10.10 0.00 41.24 5.36
2806 11924 2.026590 GCATAGCAACGCATGGGC 59.973 61.111 10.10 0.00 0.00 5.36
2807 11925 1.808546 TTGCATAGCAACGCATGGG 59.191 52.632 8.44 8.44 43.99 4.00
2830 11948 9.612620 GAGTTAAGTCACGATCAATTGATTTTT 57.387 29.630 21.57 11.92 34.37 1.94
2831 11949 9.003658 AGAGTTAAGTCACGATCAATTGATTTT 57.996 29.630 21.57 9.34 34.37 1.82
2832 11950 8.553459 AGAGTTAAGTCACGATCAATTGATTT 57.447 30.769 21.57 13.01 34.37 2.17
2833 11951 8.037758 AGAGAGTTAAGTCACGATCAATTGATT 58.962 33.333 21.57 7.79 34.37 2.57
2834 11952 7.551585 AGAGAGTTAAGTCACGATCAATTGAT 58.448 34.615 20.85 20.85 37.51 2.57
2835 11953 6.925211 AGAGAGTTAAGTCACGATCAATTGA 58.075 36.000 11.26 11.26 0.00 2.57
2836 11954 7.116948 ACAAGAGAGTTAAGTCACGATCAATTG 59.883 37.037 12.77 0.00 0.00 2.32
2837 11955 7.155328 ACAAGAGAGTTAAGTCACGATCAATT 58.845 34.615 12.77 0.00 0.00 2.32
2838 11956 6.692486 ACAAGAGAGTTAAGTCACGATCAAT 58.308 36.000 12.77 0.00 0.00 2.57
2839 11957 6.085555 ACAAGAGAGTTAAGTCACGATCAA 57.914 37.500 12.77 0.00 0.00 2.57
2840 11958 5.240844 TGACAAGAGAGTTAAGTCACGATCA 59.759 40.000 12.77 9.43 34.59 2.92
2841 11959 5.569823 GTGACAAGAGAGTTAAGTCACGATC 59.430 44.000 12.77 7.32 46.23 3.69
2842 11960 5.462405 GTGACAAGAGAGTTAAGTCACGAT 58.538 41.667 12.77 0.00 46.23 3.73
2843 11961 4.856664 GTGACAAGAGAGTTAAGTCACGA 58.143 43.478 12.77 0.00 46.23 4.35
2846 11964 3.964688 TGGGTGACAAGAGAGTTAAGTCA 59.035 43.478 12.77 0.49 36.92 3.41
2847 11965 4.602340 TGGGTGACAAGAGAGTTAAGTC 57.398 45.455 1.75 1.75 0.00 3.01
2859 11977 8.380099 AGTAGATTTATGTTACTTGGGTGACAA 58.620 33.333 0.00 0.00 43.39 3.18
2860 11978 7.913789 AGTAGATTTATGTTACTTGGGTGACA 58.086 34.615 0.00 0.00 44.08 3.58
2861 11979 8.788325 AAGTAGATTTATGTTACTTGGGTGAC 57.212 34.615 0.00 0.00 36.54 3.67
2876 11994 9.188588 CGTGTTGTCTTGACTAAAGTAGATTTA 57.811 33.333 2.35 0.00 37.18 1.40
2877 11995 7.170998 CCGTGTTGTCTTGACTAAAGTAGATTT 59.829 37.037 2.35 0.00 37.18 2.17
2878 11996 6.645415 CCGTGTTGTCTTGACTAAAGTAGATT 59.355 38.462 2.35 0.00 37.18 2.40
2879 11997 6.157211 CCGTGTTGTCTTGACTAAAGTAGAT 58.843 40.000 2.35 0.00 37.18 1.98
2880 11998 5.508489 CCCGTGTTGTCTTGACTAAAGTAGA 60.508 44.000 2.35 0.00 37.18 2.59
2881 11999 4.684703 CCCGTGTTGTCTTGACTAAAGTAG 59.315 45.833 2.35 0.00 37.18 2.57
2882 12000 4.341806 TCCCGTGTTGTCTTGACTAAAGTA 59.658 41.667 2.35 0.00 37.18 2.24
2883 12001 3.133362 TCCCGTGTTGTCTTGACTAAAGT 59.867 43.478 2.35 0.00 37.18 2.66
2884 12002 3.493503 GTCCCGTGTTGTCTTGACTAAAG 59.506 47.826 2.35 0.00 37.22 1.85
2885 12003 3.118702 TGTCCCGTGTTGTCTTGACTAAA 60.119 43.478 2.35 0.00 0.00 1.85
2886 12004 2.431419 TGTCCCGTGTTGTCTTGACTAA 59.569 45.455 2.35 0.00 0.00 2.24
2887 12005 2.033372 TGTCCCGTGTTGTCTTGACTA 58.967 47.619 2.35 0.00 0.00 2.59
2888 12006 0.828022 TGTCCCGTGTTGTCTTGACT 59.172 50.000 2.35 0.00 0.00 3.41
2889 12007 1.658994 TTGTCCCGTGTTGTCTTGAC 58.341 50.000 0.00 0.00 0.00 3.18
2890 12008 2.404923 TTTGTCCCGTGTTGTCTTGA 57.595 45.000 0.00 0.00 0.00 3.02
2891 12009 2.422127 ACTTTTGTCCCGTGTTGTCTTG 59.578 45.455 0.00 0.00 0.00 3.02
2892 12010 2.681344 GACTTTTGTCCCGTGTTGTCTT 59.319 45.455 0.00 0.00 43.37 3.01
2893 12011 2.285977 GACTTTTGTCCCGTGTTGTCT 58.714 47.619 0.00 0.00 43.37 3.41
2894 12012 2.750301 GACTTTTGTCCCGTGTTGTC 57.250 50.000 0.00 0.00 43.37 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.