Multiple sequence alignment - TraesCS3D01G124900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G124900 chr3D 100.000 2849 0 0 1 2849 83503647 83500799 0.000000e+00 5262
1 TraesCS3D01G124900 chr3D 89.396 877 81 8 992 1859 83601500 83600627 0.000000e+00 1094
2 TraesCS3D01G124900 chr3D 73.469 686 111 44 2187 2849 403674156 403673519 2.900000e-45 193
3 TraesCS3D01G124900 chr3D 76.425 386 54 25 2183 2552 535741489 535741125 1.050000e-39 174
4 TraesCS3D01G124900 chr3D 75.000 348 50 22 2175 2500 1084414 1084746 2.980000e-25 126
5 TraesCS3D01G124900 chr3A 91.355 1122 74 14 743 1845 99388813 99387696 0.000000e+00 1513
6 TraesCS3D01G124900 chr3A 89.192 1064 94 14 808 1859 99297765 99296711 0.000000e+00 1308
7 TraesCS3D01G124900 chr3A 90.526 95 9 0 519 613 7085605 7085511 2.980000e-25 126
8 TraesCS3D01G124900 chr3B 88.222 883 78 14 992 1859 130187154 130186283 0.000000e+00 1031
9 TraesCS3D01G124900 chr3B 87.921 712 65 11 744 1445 130130792 130130092 0.000000e+00 819
10 TraesCS3D01G124900 chr3B 83.165 695 78 23 79 738 130131836 130131146 1.460000e-167 599
11 TraesCS3D01G124900 chr3B 83.109 669 91 15 2187 2846 715943178 715943833 8.790000e-165 590
12 TraesCS3D01G124900 chr3B 97.685 216 5 0 1469 1684 130128702 130128487 3.470000e-99 372
13 TraesCS3D01G124900 chr2D 84.906 689 78 15 2179 2849 155760341 155761021 0.000000e+00 673
14 TraesCS3D01G124900 chr2D 80.808 594 81 24 2270 2849 50117713 50117139 4.360000e-118 435
15 TraesCS3D01G124900 chr2D 78.426 686 115 23 2183 2849 423610238 423609567 1.580000e-112 416
16 TraesCS3D01G124900 chr2D 81.313 198 34 3 1621 1817 87580575 87580380 1.060000e-34 158
17 TraesCS3D01G124900 chr4A 82.556 665 85 19 2206 2848 546202983 546203638 8.920000e-155 556
18 TraesCS3D01G124900 chr4A 76.074 326 54 15 2187 2500 728717909 728718222 6.360000e-32 148
19 TraesCS3D01G124900 chr1A 81.514 687 96 17 2183 2849 62027720 62028395 1.160000e-148 536
20 TraesCS3D01G124900 chr4D 82.588 626 75 13 2225 2849 502752847 502753439 3.250000e-144 521
21 TraesCS3D01G124900 chr5A 82.288 638 78 19 2224 2847 504727897 504728513 1.170000e-143 520
22 TraesCS3D01G124900 chr1B 80.737 706 93 27 2183 2849 573140388 573139687 7.040000e-141 510
23 TraesCS3D01G124900 chr5B 80.981 673 82 28 2187 2847 596903852 596903214 2.550000e-135 492
24 TraesCS3D01G124900 chr5B 94.479 163 7 2 2000 2161 631789641 631789480 1.690000e-62 250
25 TraesCS3D01G124900 chr7B 78.355 693 112 25 2183 2848 658241330 658242011 5.680000e-112 414
26 TraesCS3D01G124900 chr2B 90.444 293 24 4 2559 2849 237966553 237966263 1.600000e-102 383
27 TraesCS3D01G124900 chr2B 90.909 187 13 4 2000 2185 235150326 235150143 6.100000e-62 248
28 TraesCS3D01G124900 chr2B 83.069 189 32 0 1625 1813 140520338 140520150 3.770000e-39 172
29 TraesCS3D01G124900 chr1D 81.073 354 44 18 2183 2524 463926336 463925994 7.830000e-66 261
30 TraesCS3D01G124900 chr1D 90.811 185 14 3 2000 2182 389212745 389212562 7.880000e-61 244
31 TraesCS3D01G124900 chr6A 78.000 350 50 17 2187 2523 446306964 446306629 8.050000e-46 195
32 TraesCS3D01G124900 chr5D 77.431 288 46 14 2187 2455 13916554 13916267 1.370000e-33 154


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G124900 chr3D 83500799 83503647 2848 True 5262.000000 5262 100.000000 1 2849 1 chr3D.!!$R1 2848
1 TraesCS3D01G124900 chr3D 83600627 83601500 873 True 1094.000000 1094 89.396000 992 1859 1 chr3D.!!$R2 867
2 TraesCS3D01G124900 chr3A 99387696 99388813 1117 True 1513.000000 1513 91.355000 743 1845 1 chr3A.!!$R3 1102
3 TraesCS3D01G124900 chr3A 99296711 99297765 1054 True 1308.000000 1308 89.192000 808 1859 1 chr3A.!!$R2 1051
4 TraesCS3D01G124900 chr3B 130186283 130187154 871 True 1031.000000 1031 88.222000 992 1859 1 chr3B.!!$R1 867
5 TraesCS3D01G124900 chr3B 130128487 130131836 3349 True 596.666667 819 89.590333 79 1684 3 chr3B.!!$R2 1605
6 TraesCS3D01G124900 chr3B 715943178 715943833 655 False 590.000000 590 83.109000 2187 2846 1 chr3B.!!$F1 659
7 TraesCS3D01G124900 chr2D 155760341 155761021 680 False 673.000000 673 84.906000 2179 2849 1 chr2D.!!$F1 670
8 TraesCS3D01G124900 chr2D 50117139 50117713 574 True 435.000000 435 80.808000 2270 2849 1 chr2D.!!$R1 579
9 TraesCS3D01G124900 chr2D 423609567 423610238 671 True 416.000000 416 78.426000 2183 2849 1 chr2D.!!$R3 666
10 TraesCS3D01G124900 chr4A 546202983 546203638 655 False 556.000000 556 82.556000 2206 2848 1 chr4A.!!$F1 642
11 TraesCS3D01G124900 chr1A 62027720 62028395 675 False 536.000000 536 81.514000 2183 2849 1 chr1A.!!$F1 666
12 TraesCS3D01G124900 chr4D 502752847 502753439 592 False 521.000000 521 82.588000 2225 2849 1 chr4D.!!$F1 624
13 TraesCS3D01G124900 chr5A 504727897 504728513 616 False 520.000000 520 82.288000 2224 2847 1 chr5A.!!$F1 623
14 TraesCS3D01G124900 chr1B 573139687 573140388 701 True 510.000000 510 80.737000 2183 2849 1 chr1B.!!$R1 666
15 TraesCS3D01G124900 chr5B 596903214 596903852 638 True 492.000000 492 80.981000 2187 2847 1 chr5B.!!$R1 660
16 TraesCS3D01G124900 chr7B 658241330 658242011 681 False 414.000000 414 78.355000 2183 2848 1 chr7B.!!$F1 665

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
985 1409 0.38539 AAGTTCCAAGTGCCAAAGCG 59.615 50.0 0.0 0.0 44.31 4.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1958 3763 0.030908 GGTCCGGACTCGACATGATC 59.969 60.0 32.52 9.39 39.0 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
256 259 8.339344 TGAATGCTATCAACAATTCTTCTGAA 57.661 30.769 0.00 0.00 36.54 3.02
261 264 5.869753 ATCAACAATTCTTCTGAAGGACG 57.130 39.130 16.83 6.50 35.44 4.79
265 268 4.074970 ACAATTCTTCTGAAGGACGCAAT 58.925 39.130 16.83 6.53 35.44 3.56
271 274 7.539712 TTCTTCTGAAGGACGCAATAATAAG 57.460 36.000 16.83 0.00 0.00 1.73
315 319 5.630264 TGAATGCGTGATGAACAATTTTCTG 59.370 36.000 0.00 0.00 0.00 3.02
340 344 9.883142 TGAATTGAACAAAAATAGTTTTCCAGT 57.117 25.926 0.00 0.00 34.64 4.00
399 403 2.441822 GAACGTGCTGGAGAGGCAGT 62.442 60.000 0.00 0.00 40.54 4.40
400 404 2.433838 CGTGCTGGAGAGGCAGTG 60.434 66.667 0.00 0.00 40.54 3.66
403 407 2.125188 GCTGGAGAGGCAGTGCTC 60.125 66.667 16.11 10.51 0.00 4.26
438 442 1.379309 GACCATTTAAGGGGCGCCA 60.379 57.895 30.85 6.55 0.00 5.69
448 452 2.785425 GGGGCGCCACATGAATTCC 61.785 63.158 30.85 13.16 0.00 3.01
452 456 0.527565 GCGCCACATGAATTCCTGTT 59.472 50.000 13.02 0.00 0.00 3.16
457 461 3.614870 GCCACATGAATTCCTGTTGTTCC 60.615 47.826 13.02 0.00 0.00 3.62
469 487 3.066380 CTGTTGTTCCGTCATGATGTGA 58.934 45.455 13.81 7.89 0.00 3.58
475 493 4.810491 TGTTCCGTCATGATGTGATGTATG 59.190 41.667 13.81 0.00 41.41 2.39
479 497 5.068987 TCCGTCATGATGTGATGTATGAAGA 59.931 40.000 13.81 0.00 41.41 2.87
480 498 5.754890 CCGTCATGATGTGATGTATGAAGAA 59.245 40.000 13.81 0.00 41.41 2.52
488 506 8.106462 TGATGTGATGTATGAAGAAAGGGTTTA 58.894 33.333 0.00 0.00 0.00 2.01
497 515 6.028258 TGAAGAAAGGGTTTAAGGGGTTTA 57.972 37.500 0.00 0.00 0.00 2.01
498 516 5.834742 TGAAGAAAGGGTTTAAGGGGTTTAC 59.165 40.000 0.00 0.00 0.00 2.01
499 517 5.406570 AGAAAGGGTTTAAGGGGTTTACA 57.593 39.130 0.00 0.00 0.00 2.41
500 518 5.779636 AGAAAGGGTTTAAGGGGTTTACAA 58.220 37.500 0.00 0.00 0.00 2.41
501 519 5.599656 AGAAAGGGTTTAAGGGGTTTACAAC 59.400 40.000 0.00 0.00 0.00 3.32
502 520 4.819702 AGGGTTTAAGGGGTTTACAACT 57.180 40.909 0.00 0.00 0.00 3.16
503 521 4.733165 AGGGTTTAAGGGGTTTACAACTC 58.267 43.478 0.00 0.00 0.00 3.01
504 522 3.503363 GGGTTTAAGGGGTTTACAACTCG 59.497 47.826 0.00 0.00 30.64 4.18
505 523 4.136796 GGTTTAAGGGGTTTACAACTCGT 58.863 43.478 0.00 0.00 30.64 4.18
506 524 4.023792 GGTTTAAGGGGTTTACAACTCGTG 60.024 45.833 0.00 0.00 30.64 4.35
507 525 2.265589 AAGGGGTTTACAACTCGTGG 57.734 50.000 0.00 0.00 30.64 4.94
508 526 1.426751 AGGGGTTTACAACTCGTGGA 58.573 50.000 0.00 0.00 30.64 4.02
517 535 1.139058 ACAACTCGTGGAAAGCAGACT 59.861 47.619 0.00 0.00 0.00 3.24
525 543 3.381908 CGTGGAAAGCAGACTACTCCTAT 59.618 47.826 0.00 0.00 31.86 2.57
532 550 5.145513 AGCAGACTACTCCTATAAAGGGT 57.854 43.478 0.00 0.00 43.84 4.34
539 557 9.199645 AGACTACTCCTATAAAGGGTTTAAGAC 57.800 37.037 0.00 0.00 43.84 3.01
546 564 8.483758 TCCTATAAAGGGTTTAAGACTAAGCAG 58.516 37.037 0.00 0.00 43.84 4.24
550 568 3.328050 AGGGTTTAAGACTAAGCAGCAGT 59.672 43.478 0.00 0.00 0.00 4.40
561 579 2.404995 GCAGCAGTCAGTGGATGCC 61.405 63.158 14.46 0.57 40.89 4.40
566 584 1.065854 GCAGTCAGTGGATGCCTACTT 60.066 52.381 8.74 0.00 33.81 2.24
570 588 3.327757 AGTCAGTGGATGCCTACTTCAAA 59.672 43.478 0.00 0.00 0.00 2.69
573 591 4.701651 TCAGTGGATGCCTACTTCAAATTG 59.298 41.667 0.00 0.00 0.00 2.32
575 593 3.763897 GTGGATGCCTACTTCAAATTGGT 59.236 43.478 0.00 0.00 0.00 3.67
583 601 2.825205 ACTTCAAATTGGTGCACAAGC 58.175 42.857 20.43 1.36 43.48 4.01
613 631 1.896220 TGTTGAAGTAGGCAAGGCTG 58.104 50.000 6.38 0.00 0.00 4.85
669 701 9.909043 CATCGTGATTGTAATGTCGTTTTATTA 57.091 29.630 0.00 0.00 0.00 0.98
711 752 5.584649 GTGTAGTTGATAAGCTTGCCACATA 59.415 40.000 9.86 0.07 0.00 2.29
712 753 6.093495 GTGTAGTTGATAAGCTTGCCACATAA 59.907 38.462 9.86 0.00 0.00 1.90
716 757 6.604795 AGTTGATAAGCTTGCCACATAAGAAT 59.395 34.615 9.86 0.00 0.00 2.40
718 759 7.734924 TGATAAGCTTGCCACATAAGAATAG 57.265 36.000 9.86 0.00 0.00 1.73
738 779 7.729431 AGAATAGGATACAAGGTAAGTAGACCC 59.271 40.741 0.00 0.00 38.90 4.46
739 780 5.216665 AGGATACAAGGTAAGTAGACCCA 57.783 43.478 0.00 0.00 38.90 4.51
740 781 5.789535 AGGATACAAGGTAAGTAGACCCAT 58.210 41.667 0.00 0.00 38.90 4.00
741 782 6.930475 AGGATACAAGGTAAGTAGACCCATA 58.070 40.000 0.00 0.00 38.90 2.74
866 1275 3.107017 GCCCAGTGCATCGTTTTTC 57.893 52.632 0.00 0.00 40.77 2.29
970 1394 2.972713 TCTACAGCTCCACTTCCAAGTT 59.027 45.455 0.00 0.00 37.08 2.66
975 1399 1.882623 GCTCCACTTCCAAGTTCCAAG 59.117 52.381 0.00 0.00 37.08 3.61
976 1400 2.749800 GCTCCACTTCCAAGTTCCAAGT 60.750 50.000 0.00 0.00 37.08 3.16
977 1401 2.880890 CTCCACTTCCAAGTTCCAAGTG 59.119 50.000 13.38 13.38 44.47 3.16
978 1402 1.338020 CCACTTCCAAGTTCCAAGTGC 59.662 52.381 14.38 0.00 43.82 4.40
979 1403 1.338020 CACTTCCAAGTTCCAAGTGCC 59.662 52.381 9.51 0.00 40.34 5.01
980 1404 1.064017 ACTTCCAAGTTCCAAGTGCCA 60.064 47.619 0.00 0.00 35.21 4.92
981 1405 2.031120 CTTCCAAGTTCCAAGTGCCAA 58.969 47.619 0.00 0.00 0.00 4.52
983 1407 2.031120 TCCAAGTTCCAAGTGCCAAAG 58.969 47.619 0.00 0.00 0.00 2.77
984 1408 1.538849 CCAAGTTCCAAGTGCCAAAGC 60.539 52.381 0.00 0.00 40.48 3.51
985 1409 0.385390 AAGTTCCAAGTGCCAAAGCG 59.615 50.000 0.00 0.00 44.31 4.68
986 1410 1.007387 GTTCCAAGTGCCAAAGCGG 60.007 57.895 0.00 0.00 44.31 5.52
1010 1434 1.442520 CCACAACAATGGCGCTTCG 60.443 57.895 7.64 0.00 31.52 3.79
1012 1436 0.168788 CACAACAATGGCGCTTCGAT 59.831 50.000 7.64 0.00 0.00 3.59
1015 1439 1.019278 AACAATGGCGCTTCGATCGT 61.019 50.000 15.94 0.00 0.00 3.73
1029 1453 3.362399 ATCGTCCTCGTGGCTGCTG 62.362 63.158 0.00 0.00 38.33 4.41
1077 1501 1.135094 CCCCTAGCACATGTGAGGAT 58.865 55.000 29.80 13.39 28.87 3.24
1083 1507 1.202463 AGCACATGTGAGGATAGCGTC 60.202 52.381 29.80 7.32 0.00 5.19
1416 1840 2.125269 GGCTACGCCGACACCAAT 60.125 61.111 0.00 0.00 39.62 3.16
1622 3427 2.637383 GGACCAACTCCGAGAGCGT 61.637 63.158 1.33 0.00 35.23 5.07
1701 3506 2.046507 GTCCAGTGCCTGCAGGAG 60.047 66.667 37.21 20.62 37.39 3.69
1712 3517 4.767255 GCAGGAGTCGGTGCAGGG 62.767 72.222 10.45 0.00 39.62 4.45
1733 3538 1.458777 TGGACTGGGACCTCAACGT 60.459 57.895 0.00 0.00 0.00 3.99
1822 3627 2.977700 ACTGCAGTGAGTGACAACG 58.022 52.632 20.97 0.00 0.00 4.10
1825 3630 1.723542 CTGCAGTGAGTGACAACGATC 59.276 52.381 5.25 0.00 0.00 3.69
1829 3634 3.642705 CAGTGAGTGACAACGATCTCAA 58.357 45.455 0.00 0.00 38.40 3.02
1832 3637 5.287274 CAGTGAGTGACAACGATCTCAATAC 59.713 44.000 0.00 0.00 38.40 1.89
1845 3650 2.758979 TCTCAATACCGGTGAGTTCTCC 59.241 50.000 19.93 0.00 42.63 3.71
1859 3664 6.169094 GTGAGTTCTCCTGATCAATCTTTCA 58.831 40.000 0.00 0.00 0.00 2.69
1860 3665 6.652481 GTGAGTTCTCCTGATCAATCTTTCAA 59.348 38.462 0.00 0.00 0.00 2.69
1861 3666 7.336427 GTGAGTTCTCCTGATCAATCTTTCAAT 59.664 37.037 0.00 0.00 0.00 2.57
1862 3667 7.886970 TGAGTTCTCCTGATCAATCTTTCAATT 59.113 33.333 0.00 0.00 0.00 2.32
1863 3668 8.647256 AGTTCTCCTGATCAATCTTTCAATTT 57.353 30.769 0.00 0.00 0.00 1.82
1864 3669 8.738106 AGTTCTCCTGATCAATCTTTCAATTTC 58.262 33.333 0.00 0.00 0.00 2.17
1865 3670 7.636150 TCTCCTGATCAATCTTTCAATTTCC 57.364 36.000 0.00 0.00 0.00 3.13
1866 3671 7.408543 TCTCCTGATCAATCTTTCAATTTCCT 58.591 34.615 0.00 0.00 0.00 3.36
1867 3672 7.555554 TCTCCTGATCAATCTTTCAATTTCCTC 59.444 37.037 0.00 0.00 0.00 3.71
1868 3673 7.408543 TCCTGATCAATCTTTCAATTTCCTCT 58.591 34.615 0.00 0.00 0.00 3.69
1869 3674 7.555554 TCCTGATCAATCTTTCAATTTCCTCTC 59.444 37.037 0.00 0.00 0.00 3.20
1870 3675 7.338703 CCTGATCAATCTTTCAATTTCCTCTCA 59.661 37.037 0.00 0.00 0.00 3.27
1871 3676 8.048534 TGATCAATCTTTCAATTTCCTCTCAC 57.951 34.615 0.00 0.00 0.00 3.51
1872 3677 6.486253 TCAATCTTTCAATTTCCTCTCACG 57.514 37.500 0.00 0.00 0.00 4.35
1873 3678 5.412594 TCAATCTTTCAATTTCCTCTCACGG 59.587 40.000 0.00 0.00 0.00 4.94
1874 3679 4.617253 TCTTTCAATTTCCTCTCACGGA 57.383 40.909 0.00 0.00 0.00 4.69
1875 3680 4.315803 TCTTTCAATTTCCTCTCACGGAC 58.684 43.478 0.00 0.00 31.44 4.79
1876 3681 3.762407 TTCAATTTCCTCTCACGGACA 57.238 42.857 0.00 0.00 31.44 4.02
1877 3682 3.762407 TCAATTTCCTCTCACGGACAA 57.238 42.857 0.00 0.00 31.44 3.18
1878 3683 4.079980 TCAATTTCCTCTCACGGACAAA 57.920 40.909 0.00 0.00 31.44 2.83
1879 3684 4.456535 TCAATTTCCTCTCACGGACAAAA 58.543 39.130 0.00 0.00 31.44 2.44
1880 3685 4.884744 TCAATTTCCTCTCACGGACAAAAA 59.115 37.500 0.00 0.00 31.44 1.94
1881 3686 5.534654 TCAATTTCCTCTCACGGACAAAAAT 59.465 36.000 0.00 0.00 31.44 1.82
1882 3687 4.829064 TTTCCTCTCACGGACAAAAATG 57.171 40.909 0.00 0.00 31.44 2.32
1883 3688 2.778299 TCCTCTCACGGACAAAAATGG 58.222 47.619 0.00 0.00 0.00 3.16
1884 3689 1.812571 CCTCTCACGGACAAAAATGGG 59.187 52.381 0.00 0.00 0.00 4.00
1885 3690 2.504367 CTCTCACGGACAAAAATGGGT 58.496 47.619 0.00 0.00 0.00 4.51
1886 3691 2.884639 CTCTCACGGACAAAAATGGGTT 59.115 45.455 0.00 0.00 0.00 4.11
1887 3692 2.621055 TCTCACGGACAAAAATGGGTTG 59.379 45.455 0.00 0.00 0.00 3.77
1888 3693 1.067821 TCACGGACAAAAATGGGTTGC 59.932 47.619 0.00 0.00 0.00 4.17
1889 3694 1.115467 ACGGACAAAAATGGGTTGCA 58.885 45.000 0.00 0.00 0.00 4.08
1890 3695 1.691434 ACGGACAAAAATGGGTTGCAT 59.309 42.857 0.00 0.00 0.00 3.96
1891 3696 2.288763 ACGGACAAAAATGGGTTGCATC 60.289 45.455 0.00 0.00 0.00 3.91
1892 3697 2.029110 CGGACAAAAATGGGTTGCATCT 60.029 45.455 0.00 0.00 0.00 2.90
1893 3698 3.554752 CGGACAAAAATGGGTTGCATCTT 60.555 43.478 0.00 0.00 0.00 2.40
1894 3699 4.388485 GGACAAAAATGGGTTGCATCTTT 58.612 39.130 0.00 0.00 0.00 2.52
1895 3700 4.452114 GGACAAAAATGGGTTGCATCTTTC 59.548 41.667 0.00 0.00 0.00 2.62
1896 3701 5.033589 ACAAAAATGGGTTGCATCTTTCA 57.966 34.783 0.00 0.00 0.00 2.69
1897 3702 5.623169 ACAAAAATGGGTTGCATCTTTCAT 58.377 33.333 0.00 0.00 0.00 2.57
1898 3703 5.702209 ACAAAAATGGGTTGCATCTTTCATC 59.298 36.000 0.00 0.00 0.00 2.92
1899 3704 4.476628 AAATGGGTTGCATCTTTCATCC 57.523 40.909 0.00 0.00 0.00 3.51
1900 3705 2.601240 TGGGTTGCATCTTTCATCCA 57.399 45.000 0.00 0.00 0.00 3.41
1901 3706 2.886913 TGGGTTGCATCTTTCATCCAA 58.113 42.857 0.00 0.00 0.00 3.53
1902 3707 3.237746 TGGGTTGCATCTTTCATCCAAA 58.762 40.909 0.00 0.00 0.00 3.28
1903 3708 3.645212 TGGGTTGCATCTTTCATCCAAAA 59.355 39.130 0.00 0.00 0.00 2.44
1904 3709 3.996363 GGGTTGCATCTTTCATCCAAAAC 59.004 43.478 0.00 0.00 0.00 2.43
1905 3710 3.674753 GGTTGCATCTTTCATCCAAAACG 59.325 43.478 0.00 0.00 0.00 3.60
1906 3711 4.298332 GTTGCATCTTTCATCCAAAACGT 58.702 39.130 0.00 0.00 0.00 3.99
1907 3712 4.159377 TGCATCTTTCATCCAAAACGTC 57.841 40.909 0.00 0.00 0.00 4.34
1908 3713 3.820467 TGCATCTTTCATCCAAAACGTCT 59.180 39.130 0.00 0.00 0.00 4.18
1909 3714 4.083324 TGCATCTTTCATCCAAAACGTCTC 60.083 41.667 0.00 0.00 0.00 3.36
1910 3715 4.083324 GCATCTTTCATCCAAAACGTCTCA 60.083 41.667 0.00 0.00 0.00 3.27
1911 3716 5.385617 CATCTTTCATCCAAAACGTCTCAC 58.614 41.667 0.00 0.00 0.00 3.51
1912 3717 4.703897 TCTTTCATCCAAAACGTCTCACT 58.296 39.130 0.00 0.00 0.00 3.41
1913 3718 4.511454 TCTTTCATCCAAAACGTCTCACTG 59.489 41.667 0.00 0.00 0.00 3.66
1914 3719 3.744238 TCATCCAAAACGTCTCACTGA 57.256 42.857 0.00 0.00 0.00 3.41
1915 3720 3.653344 TCATCCAAAACGTCTCACTGAG 58.347 45.455 0.00 0.00 0.00 3.35
1916 3721 3.320826 TCATCCAAAACGTCTCACTGAGA 59.679 43.478 4.50 4.50 36.22 3.27
1929 3734 5.057149 TCTCACTGAGACAAAACTAAAGGC 58.943 41.667 4.50 0.00 33.35 4.35
1930 3735 4.776349 TCACTGAGACAAAACTAAAGGCA 58.224 39.130 0.00 0.00 0.00 4.75
1931 3736 5.376625 TCACTGAGACAAAACTAAAGGCAT 58.623 37.500 0.00 0.00 0.00 4.40
1932 3737 5.470098 TCACTGAGACAAAACTAAAGGCATC 59.530 40.000 0.00 0.00 0.00 3.91
1933 3738 5.239306 CACTGAGACAAAACTAAAGGCATCA 59.761 40.000 0.00 0.00 0.00 3.07
1934 3739 5.239525 ACTGAGACAAAACTAAAGGCATCAC 59.760 40.000 0.00 0.00 0.00 3.06
1935 3740 4.518970 TGAGACAAAACTAAAGGCATCACC 59.481 41.667 0.00 0.00 39.61 4.02
1936 3741 4.469657 AGACAAAACTAAAGGCATCACCA 58.530 39.130 0.00 0.00 43.14 4.17
1937 3742 4.892934 AGACAAAACTAAAGGCATCACCAA 59.107 37.500 0.00 0.00 43.14 3.67
1938 3743 5.362430 AGACAAAACTAAAGGCATCACCAAA 59.638 36.000 0.00 0.00 43.14 3.28
1939 3744 5.600696 ACAAAACTAAAGGCATCACCAAAG 58.399 37.500 0.00 0.00 43.14 2.77
1940 3745 3.942130 AACTAAAGGCATCACCAAAGC 57.058 42.857 0.00 0.00 43.14 3.51
1941 3746 2.875296 ACTAAAGGCATCACCAAAGCA 58.125 42.857 0.00 0.00 43.14 3.91
1942 3747 3.230134 ACTAAAGGCATCACCAAAGCAA 58.770 40.909 0.00 0.00 43.14 3.91
1943 3748 3.640967 ACTAAAGGCATCACCAAAGCAAA 59.359 39.130 0.00 0.00 43.14 3.68
1944 3749 2.531522 AAGGCATCACCAAAGCAAAC 57.468 45.000 0.00 0.00 43.14 2.93
1945 3750 0.681175 AGGCATCACCAAAGCAAACC 59.319 50.000 0.00 0.00 43.14 3.27
1946 3751 0.320683 GGCATCACCAAAGCAAACCC 60.321 55.000 0.00 0.00 38.86 4.11
1947 3752 0.681175 GCATCACCAAAGCAAACCCT 59.319 50.000 0.00 0.00 0.00 4.34
1948 3753 1.337167 GCATCACCAAAGCAAACCCTC 60.337 52.381 0.00 0.00 0.00 4.30
1949 3754 1.962807 CATCACCAAAGCAAACCCTCA 59.037 47.619 0.00 0.00 0.00 3.86
1950 3755 2.151502 TCACCAAAGCAAACCCTCAA 57.848 45.000 0.00 0.00 0.00 3.02
1951 3756 2.461695 TCACCAAAGCAAACCCTCAAA 58.538 42.857 0.00 0.00 0.00 2.69
1952 3757 2.430332 TCACCAAAGCAAACCCTCAAAG 59.570 45.455 0.00 0.00 0.00 2.77
1953 3758 2.168313 CACCAAAGCAAACCCTCAAAGT 59.832 45.455 0.00 0.00 0.00 2.66
1954 3759 2.168313 ACCAAAGCAAACCCTCAAAGTG 59.832 45.455 0.00 0.00 0.00 3.16
1955 3760 2.204237 CAAAGCAAACCCTCAAAGTGC 58.796 47.619 0.00 0.00 35.41 4.40
1956 3761 1.484038 AAGCAAACCCTCAAAGTGCA 58.516 45.000 0.00 0.00 37.68 4.57
1957 3762 1.708341 AGCAAACCCTCAAAGTGCAT 58.292 45.000 0.00 0.00 37.68 3.96
1958 3763 1.342174 AGCAAACCCTCAAAGTGCATG 59.658 47.619 0.00 0.00 37.68 4.06
1959 3764 1.340889 GCAAACCCTCAAAGTGCATGA 59.659 47.619 0.00 0.00 35.28 3.07
1960 3765 2.028748 GCAAACCCTCAAAGTGCATGAT 60.029 45.455 0.00 0.00 35.28 2.45
1961 3766 3.841643 CAAACCCTCAAAGTGCATGATC 58.158 45.455 0.00 0.00 0.00 2.92
1962 3767 2.885135 ACCCTCAAAGTGCATGATCA 57.115 45.000 0.00 0.00 0.00 2.92
1963 3768 3.377253 ACCCTCAAAGTGCATGATCAT 57.623 42.857 1.18 1.18 0.00 2.45
1964 3769 3.021695 ACCCTCAAAGTGCATGATCATG 58.978 45.455 28.04 28.04 41.60 3.07
1965 3770 3.021695 CCCTCAAAGTGCATGATCATGT 58.978 45.455 31.09 13.57 40.80 3.21
1966 3771 3.066342 CCCTCAAAGTGCATGATCATGTC 59.934 47.826 31.09 23.96 40.80 3.06
1967 3772 3.242641 CCTCAAAGTGCATGATCATGTCG 60.243 47.826 31.09 16.13 40.80 4.35
1968 3773 3.598299 TCAAAGTGCATGATCATGTCGA 58.402 40.909 31.09 17.75 40.80 4.20
1969 3774 3.619929 TCAAAGTGCATGATCATGTCGAG 59.380 43.478 31.09 18.50 40.80 4.04
1970 3775 2.975732 AGTGCATGATCATGTCGAGT 57.024 45.000 31.09 17.91 40.80 4.18
1971 3776 2.819115 AGTGCATGATCATGTCGAGTC 58.181 47.619 31.09 16.99 40.80 3.36
1972 3777 1.863454 GTGCATGATCATGTCGAGTCC 59.137 52.381 31.09 16.37 40.80 3.85
1973 3778 1.135046 GCATGATCATGTCGAGTCCG 58.865 55.000 31.09 8.30 40.80 4.79
1974 3779 1.775869 CATGATCATGTCGAGTCCGG 58.224 55.000 24.87 0.00 36.24 5.14
1975 3780 1.338020 CATGATCATGTCGAGTCCGGA 59.662 52.381 24.87 0.00 36.24 5.14
1976 3781 0.738975 TGATCATGTCGAGTCCGGAC 59.261 55.000 27.67 27.67 36.24 4.79
1977 3782 0.030908 GATCATGTCGAGTCCGGACC 59.969 60.000 30.82 20.28 36.24 4.46
1978 3783 0.683179 ATCATGTCGAGTCCGGACCA 60.683 55.000 30.82 21.17 36.24 4.02
1979 3784 1.153823 CATGTCGAGTCCGGACCAC 60.154 63.158 30.82 23.45 36.24 4.16
1980 3785 1.304217 ATGTCGAGTCCGGACCACT 60.304 57.895 30.82 13.25 36.24 4.00
1981 3786 0.898789 ATGTCGAGTCCGGACCACTT 60.899 55.000 30.82 18.73 36.24 3.16
1982 3787 1.111116 TGTCGAGTCCGGACCACTTT 61.111 55.000 30.82 12.40 36.24 2.66
1983 3788 0.033090 GTCGAGTCCGGACCACTTTT 59.967 55.000 30.82 11.57 36.24 2.27
1984 3789 1.270550 GTCGAGTCCGGACCACTTTTA 59.729 52.381 30.82 7.11 36.24 1.52
1985 3790 2.094338 GTCGAGTCCGGACCACTTTTAT 60.094 50.000 30.82 9.91 36.24 1.40
1986 3791 2.165030 TCGAGTCCGGACCACTTTTATC 59.835 50.000 30.82 17.41 36.24 1.75
1987 3792 2.094390 CGAGTCCGGACCACTTTTATCA 60.094 50.000 30.82 0.00 0.00 2.15
1988 3793 3.430374 CGAGTCCGGACCACTTTTATCAT 60.430 47.826 30.82 7.68 0.00 2.45
1989 3794 4.120589 GAGTCCGGACCACTTTTATCATC 58.879 47.826 30.82 13.22 0.00 2.92
1990 3795 3.118371 AGTCCGGACCACTTTTATCATCC 60.118 47.826 30.82 0.00 0.00 3.51
1991 3796 2.841266 TCCGGACCACTTTTATCATCCA 59.159 45.455 0.00 0.00 0.00 3.41
1992 3797 3.264706 TCCGGACCACTTTTATCATCCAA 59.735 43.478 0.00 0.00 0.00 3.53
1993 3798 3.627577 CCGGACCACTTTTATCATCCAAG 59.372 47.826 0.00 0.00 0.00 3.61
1994 3799 4.513442 CGGACCACTTTTATCATCCAAGA 58.487 43.478 0.00 0.00 0.00 3.02
1995 3800 4.572389 CGGACCACTTTTATCATCCAAGAG 59.428 45.833 0.00 0.00 0.00 2.85
1996 3801 4.884164 GGACCACTTTTATCATCCAAGAGG 59.116 45.833 0.00 0.00 35.17 3.69
2007 3812 0.620556 TCCAAGAGGAAGGCATGACC 59.379 55.000 0.00 0.00 42.23 4.02
2008 3813 0.329261 CCAAGAGGAAGGCATGACCA 59.671 55.000 0.00 0.00 37.93 4.02
2009 3814 1.272092 CCAAGAGGAAGGCATGACCAA 60.272 52.381 0.00 0.00 37.93 3.67
2010 3815 1.815003 CAAGAGGAAGGCATGACCAAC 59.185 52.381 0.00 0.00 43.14 3.77
2011 3816 0.036010 AGAGGAAGGCATGACCAACG 60.036 55.000 0.00 0.00 43.14 4.10
2012 3817 1.648467 GAGGAAGGCATGACCAACGC 61.648 60.000 0.00 0.00 43.14 4.84
2013 3818 1.675641 GGAAGGCATGACCAACGCT 60.676 57.895 0.00 0.00 43.14 5.07
2014 3819 1.503542 GAAGGCATGACCAACGCTG 59.496 57.895 0.00 0.00 43.14 5.18
2015 3820 2.533391 GAAGGCATGACCAACGCTGC 62.533 60.000 0.00 0.00 43.14 5.25
2016 3821 3.364441 GGCATGACCAACGCTGCA 61.364 61.111 0.00 0.00 38.86 4.41
2017 3822 2.126734 GCATGACCAACGCTGCAC 60.127 61.111 0.00 0.00 34.77 4.57
2018 3823 2.620112 GCATGACCAACGCTGCACT 61.620 57.895 0.00 0.00 34.77 4.40
2019 3824 1.499056 CATGACCAACGCTGCACTC 59.501 57.895 0.00 0.00 0.00 3.51
2020 3825 0.952497 CATGACCAACGCTGCACTCT 60.952 55.000 0.00 0.00 0.00 3.24
2021 3826 0.952497 ATGACCAACGCTGCACTCTG 60.952 55.000 0.00 0.00 0.00 3.35
2022 3827 2.281070 ACCAACGCTGCACTCTGG 60.281 61.111 0.00 2.67 0.00 3.86
2023 3828 3.052082 CCAACGCTGCACTCTGGG 61.052 66.667 0.00 0.00 0.00 4.45
2024 3829 3.730761 CAACGCTGCACTCTGGGC 61.731 66.667 0.00 0.00 0.00 5.36
2029 3834 3.052082 CTGCACTCTGGGCGGTTG 61.052 66.667 0.00 0.00 32.96 3.77
2032 3837 2.743928 CACTCTGGGCGGTTGCTC 60.744 66.667 0.00 0.00 44.05 4.26
2033 3838 4.021925 ACTCTGGGCGGTTGCTCC 62.022 66.667 0.00 0.00 42.67 4.70
2034 3839 4.020617 CTCTGGGCGGTTGCTCCA 62.021 66.667 0.00 0.00 42.67 3.86
2041 3846 2.747855 CGGTTGCTCCAGCCCTTC 60.748 66.667 0.00 0.00 41.18 3.46
2042 3847 2.436109 GGTTGCTCCAGCCCTTCA 59.564 61.111 0.00 0.00 41.18 3.02
2043 3848 1.973812 GGTTGCTCCAGCCCTTCAC 60.974 63.158 0.00 0.00 41.18 3.18
2044 3849 1.228245 GTTGCTCCAGCCCTTCACA 60.228 57.895 0.00 0.00 41.18 3.58
2045 3850 0.610232 GTTGCTCCAGCCCTTCACAT 60.610 55.000 0.00 0.00 41.18 3.21
2046 3851 0.322816 TTGCTCCAGCCCTTCACATC 60.323 55.000 0.00 0.00 41.18 3.06
2047 3852 1.817099 GCTCCAGCCCTTCACATCG 60.817 63.158 0.00 0.00 34.31 3.84
2048 3853 1.153289 CTCCAGCCCTTCACATCGG 60.153 63.158 0.00 0.00 0.00 4.18
2049 3854 1.612146 TCCAGCCCTTCACATCGGA 60.612 57.895 0.00 0.00 0.00 4.55
2050 3855 0.982852 TCCAGCCCTTCACATCGGAT 60.983 55.000 0.00 0.00 0.00 4.18
2051 3856 0.107017 CCAGCCCTTCACATCGGATT 60.107 55.000 0.00 0.00 0.00 3.01
2052 3857 1.683011 CCAGCCCTTCACATCGGATTT 60.683 52.381 0.00 0.00 0.00 2.17
2053 3858 1.402968 CAGCCCTTCACATCGGATTTG 59.597 52.381 0.00 0.00 0.00 2.32
2054 3859 0.740737 GCCCTTCACATCGGATTTGG 59.259 55.000 4.44 0.00 0.00 3.28
2055 3860 1.955208 GCCCTTCACATCGGATTTGGT 60.955 52.381 4.44 0.00 0.00 3.67
2056 3861 1.745087 CCCTTCACATCGGATTTGGTG 59.255 52.381 4.44 2.94 0.00 4.17
2057 3862 1.745087 CCTTCACATCGGATTTGGTGG 59.255 52.381 4.44 3.81 32.29 4.61
2058 3863 1.133025 CTTCACATCGGATTTGGTGGC 59.867 52.381 4.44 0.00 32.29 5.01
2059 3864 0.679640 TCACATCGGATTTGGTGGCC 60.680 55.000 0.00 0.00 32.29 5.36
2060 3865 0.964860 CACATCGGATTTGGTGGCCA 60.965 55.000 0.00 0.00 0.00 5.36
2061 3866 0.680921 ACATCGGATTTGGTGGCCAG 60.681 55.000 5.11 0.00 33.81 4.85
2062 3867 0.394216 CATCGGATTTGGTGGCCAGA 60.394 55.000 5.11 0.00 33.81 3.86
2063 3868 0.394352 ATCGGATTTGGTGGCCAGAC 60.394 55.000 5.11 2.17 33.81 3.51
2064 3869 1.002134 CGGATTTGGTGGCCAGACT 60.002 57.895 5.11 0.00 33.81 3.24
2065 3870 0.251916 CGGATTTGGTGGCCAGACTA 59.748 55.000 5.11 0.00 33.81 2.59
2066 3871 1.339631 CGGATTTGGTGGCCAGACTAA 60.340 52.381 5.11 6.16 33.81 2.24
2067 3872 2.802719 GGATTTGGTGGCCAGACTAAA 58.197 47.619 5.11 6.50 33.81 1.85
2068 3873 3.161866 GGATTTGGTGGCCAGACTAAAA 58.838 45.455 5.11 2.98 33.81 1.52
2069 3874 3.576550 GGATTTGGTGGCCAGACTAAAAA 59.423 43.478 5.11 1.00 33.81 1.94
2085 3890 3.822607 AAAAACGGTGTTGCTTGCA 57.177 42.105 0.00 0.00 0.00 4.08
2086 3891 1.639280 AAAAACGGTGTTGCTTGCAG 58.361 45.000 0.00 0.00 0.00 4.41
2087 3892 0.814457 AAAACGGTGTTGCTTGCAGA 59.186 45.000 0.00 0.00 0.00 4.26
2088 3893 0.381801 AAACGGTGTTGCTTGCAGAG 59.618 50.000 0.00 0.00 0.00 3.35
2089 3894 0.748005 AACGGTGTTGCTTGCAGAGT 60.748 50.000 0.00 0.00 0.00 3.24
2090 3895 1.280746 CGGTGTTGCTTGCAGAGTG 59.719 57.895 0.00 0.00 0.00 3.51
2091 3896 1.656441 GGTGTTGCTTGCAGAGTGG 59.344 57.895 0.00 0.00 0.00 4.00
2092 3897 0.819259 GGTGTTGCTTGCAGAGTGGA 60.819 55.000 0.00 0.00 0.00 4.02
2093 3898 1.024271 GTGTTGCTTGCAGAGTGGAA 58.976 50.000 0.00 0.00 0.00 3.53
2094 3899 1.024271 TGTTGCTTGCAGAGTGGAAC 58.976 50.000 0.00 7.93 0.00 3.62
2095 3900 0.040958 GTTGCTTGCAGAGTGGAACG 60.041 55.000 0.00 0.00 45.86 3.95
2096 3901 0.179059 TTGCTTGCAGAGTGGAACGA 60.179 50.000 0.00 0.00 45.86 3.85
2097 3902 0.601046 TGCTTGCAGAGTGGAACGAG 60.601 55.000 0.00 0.00 45.86 4.18
2098 3903 1.905922 GCTTGCAGAGTGGAACGAGC 61.906 60.000 0.00 0.00 45.86 5.03
2099 3904 1.621301 CTTGCAGAGTGGAACGAGCG 61.621 60.000 0.00 0.00 45.86 5.03
2100 3905 3.482783 GCAGAGTGGAACGAGCGC 61.483 66.667 0.00 0.00 45.86 5.92
2101 3906 2.259818 CAGAGTGGAACGAGCGCT 59.740 61.111 11.27 11.27 45.86 5.92
2102 3907 1.373497 CAGAGTGGAACGAGCGCTT 60.373 57.895 13.26 0.00 45.86 4.68
2103 3908 1.373497 AGAGTGGAACGAGCGCTTG 60.373 57.895 23.34 23.34 45.86 4.01
2104 3909 3.016474 GAGTGGAACGAGCGCTTGC 62.016 63.158 24.80 8.47 45.86 4.01
2105 3910 3.345808 GTGGAACGAGCGCTTGCA 61.346 61.111 24.80 11.36 42.66 4.08
2106 3911 3.043713 TGGAACGAGCGCTTGCAG 61.044 61.111 24.80 12.55 42.66 4.41
2107 3912 2.738521 GGAACGAGCGCTTGCAGA 60.739 61.111 24.80 0.00 42.66 4.26
2108 3913 2.734673 GGAACGAGCGCTTGCAGAG 61.735 63.158 24.80 8.30 42.66 3.35
2109 3914 2.734673 GAACGAGCGCTTGCAGAGG 61.735 63.158 24.80 4.55 42.66 3.69
2110 3915 3.226429 AACGAGCGCTTGCAGAGGA 62.226 57.895 24.80 0.00 42.66 3.71
2111 3916 2.884685 CGAGCGCTTGCAGAGGAG 60.885 66.667 13.26 0.00 42.66 3.69
2112 3917 2.511145 GAGCGCTTGCAGAGGAGG 60.511 66.667 13.26 0.00 42.66 4.30
2113 3918 4.774503 AGCGCTTGCAGAGGAGGC 62.775 66.667 2.64 0.00 42.66 4.70
2114 3919 4.774503 GCGCTTGCAGAGGAGGCT 62.775 66.667 0.00 0.00 38.92 4.58
2115 3920 2.818714 CGCTTGCAGAGGAGGCTG 60.819 66.667 0.00 0.00 38.91 4.85
2126 3931 3.478274 GAGGCTGCCTCCTCCCTG 61.478 72.222 33.62 0.00 44.36 4.45
2127 3932 3.991924 GAGGCTGCCTCCTCCCTGA 62.992 68.421 33.62 0.00 44.36 3.86
2128 3933 3.791586 GGCTGCCTCCTCCCTGAC 61.792 72.222 12.43 0.00 0.00 3.51
2129 3934 3.005539 GCTGCCTCCTCCCTGACA 61.006 66.667 0.00 0.00 0.00 3.58
2130 3935 2.596851 GCTGCCTCCTCCCTGACAA 61.597 63.158 0.00 0.00 0.00 3.18
2131 3936 2.069776 CTGCCTCCTCCCTGACAAA 58.930 57.895 0.00 0.00 0.00 2.83
2132 3937 0.401738 CTGCCTCCTCCCTGACAAAA 59.598 55.000 0.00 0.00 0.00 2.44
2133 3938 0.850100 TGCCTCCTCCCTGACAAAAA 59.150 50.000 0.00 0.00 0.00 1.94
2134 3939 1.202927 TGCCTCCTCCCTGACAAAAAG 60.203 52.381 0.00 0.00 0.00 2.27
2135 3940 1.202940 GCCTCCTCCCTGACAAAAAGT 60.203 52.381 0.00 0.00 0.00 2.66
2146 3951 2.909876 GACAAAAAGTCGCTTCAGCTC 58.090 47.619 0.00 0.00 37.53 4.09
2147 3952 2.545946 GACAAAAAGTCGCTTCAGCTCT 59.454 45.455 0.00 0.00 37.53 4.09
2148 3953 2.545946 ACAAAAAGTCGCTTCAGCTCTC 59.454 45.455 0.00 0.00 39.32 3.20
2149 3954 2.805099 CAAAAAGTCGCTTCAGCTCTCT 59.195 45.455 0.00 0.00 39.32 3.10
2150 3955 2.362169 AAAGTCGCTTCAGCTCTCTC 57.638 50.000 0.00 0.00 39.32 3.20
2151 3956 0.530288 AAGTCGCTTCAGCTCTCTCC 59.470 55.000 0.00 0.00 39.32 3.71
2152 3957 0.323360 AGTCGCTTCAGCTCTCTCCT 60.323 55.000 0.00 0.00 39.32 3.69
2153 3958 1.065053 AGTCGCTTCAGCTCTCTCCTA 60.065 52.381 0.00 0.00 39.32 2.94
2154 3959 1.333619 GTCGCTTCAGCTCTCTCCTAG 59.666 57.143 0.00 0.00 39.32 3.02
2155 3960 0.030638 CGCTTCAGCTCTCTCCTAGC 59.969 60.000 0.00 0.00 40.40 3.42
2156 3961 0.389025 GCTTCAGCTCTCTCCTAGCC 59.611 60.000 0.00 0.00 41.02 3.93
2157 3962 1.774110 CTTCAGCTCTCTCCTAGCCA 58.226 55.000 0.00 0.00 41.02 4.75
2158 3963 2.106566 CTTCAGCTCTCTCCTAGCCAA 58.893 52.381 0.00 0.00 41.02 4.52
2159 3964 2.468301 TCAGCTCTCTCCTAGCCAAT 57.532 50.000 0.00 0.00 41.02 3.16
2160 3965 2.037901 TCAGCTCTCTCCTAGCCAATG 58.962 52.381 0.00 0.00 41.02 2.82
2161 3966 1.761784 CAGCTCTCTCCTAGCCAATGT 59.238 52.381 0.00 0.00 41.02 2.71
2162 3967 2.038659 AGCTCTCTCCTAGCCAATGTC 58.961 52.381 0.00 0.00 41.02 3.06
2163 3968 1.759445 GCTCTCTCCTAGCCAATGTCA 59.241 52.381 0.00 0.00 33.73 3.58
2164 3969 2.368221 GCTCTCTCCTAGCCAATGTCAT 59.632 50.000 0.00 0.00 33.73 3.06
2165 3970 3.803021 GCTCTCTCCTAGCCAATGTCATG 60.803 52.174 0.00 0.00 33.73 3.07
2166 3971 2.702478 TCTCTCCTAGCCAATGTCATGG 59.298 50.000 0.00 0.00 43.70 3.66
2174 3979 0.452987 CCAATGTCATGGCAACCTCG 59.547 55.000 3.01 0.00 32.78 4.63
2175 3980 0.452987 CAATGTCATGGCAACCTCGG 59.547 55.000 3.01 0.00 0.00 4.63
2176 3981 1.315257 AATGTCATGGCAACCTCGGC 61.315 55.000 3.01 0.00 0.00 5.54
2177 3982 2.045926 GTCATGGCAACCTCGGCT 60.046 61.111 0.00 0.00 0.00 5.52
2178 3983 1.675641 GTCATGGCAACCTCGGCTT 60.676 57.895 0.00 0.00 0.00 4.35
2179 3984 1.675310 TCATGGCAACCTCGGCTTG 60.675 57.895 0.00 0.00 37.78 4.01
2180 3985 3.064324 ATGGCAACCTCGGCTTGC 61.064 61.111 12.03 12.03 42.84 4.01
2181 3986 3.574074 ATGGCAACCTCGGCTTGCT 62.574 57.895 16.85 2.99 43.08 3.91
2185 3990 0.109735 GCAACCTCGGCTTGCTTTAC 60.110 55.000 12.75 0.00 40.79 2.01
2204 4009 2.110627 GCATCTCCAGCCGCATCT 59.889 61.111 0.00 0.00 0.00 2.90
2216 4024 1.377725 CGCATCTCCAACAAGCCCT 60.378 57.895 0.00 0.00 0.00 5.19
2219 4027 0.745845 CATCTCCAACAAGCCCTCCG 60.746 60.000 0.00 0.00 0.00 4.63
2362 4216 2.728015 GAAACGGTTTTGGCGCGG 60.728 61.111 8.83 0.00 0.00 6.46
2449 4305 1.438814 GGGAATCAATGCCAAGGCG 59.561 57.895 6.60 0.00 45.51 5.52
2591 4449 0.602905 CCCGCCTCTATAAAAGCCGG 60.603 60.000 0.00 0.00 33.54 6.13
2718 4661 2.742116 ATGGCCGAACGCTACCCAT 61.742 57.895 0.00 0.00 37.74 4.00
2798 4741 2.988570 CTCCTATACGAGGCGGACTAT 58.011 52.381 0.00 0.00 46.25 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
246 249 7.770897 ACTTATTATTGCGTCCTTCAGAAGAAT 59.229 33.333 12.14 5.62 32.31 2.40
249 252 6.910536 ACTTATTATTGCGTCCTTCAGAAG 57.089 37.500 2.78 2.78 0.00 2.85
252 255 7.715265 ATGTACTTATTATTGCGTCCTTCAG 57.285 36.000 0.00 0.00 0.00 3.02
291 295 5.630264 CAGAAAATTGTTCATCACGCATTCA 59.370 36.000 0.00 0.00 0.00 2.57
298 302 9.033481 TGTTCAATTCAGAAAATTGTTCATCAC 57.967 29.630 9.58 1.94 38.44 3.06
387 391 2.583520 GGAGCACTGCCTCTCCAG 59.416 66.667 0.00 0.00 46.24 3.86
416 420 2.125326 GCCCCTTAAATGGTCCGGC 61.125 63.158 0.00 0.00 0.00 6.13
418 422 2.478033 GCGCCCCTTAAATGGTCCG 61.478 63.158 0.00 0.00 0.00 4.79
438 442 3.486383 ACGGAACAACAGGAATTCATGT 58.514 40.909 19.49 19.49 43.27 3.21
448 452 3.066380 TCACATCATGACGGAACAACAG 58.934 45.455 0.00 0.00 29.99 3.16
452 456 3.333029 ACATCACATCATGACGGAACA 57.667 42.857 0.00 0.00 41.24 3.18
457 461 6.833342 TTCTTCATACATCACATCATGACG 57.167 37.500 0.00 0.00 41.24 4.35
469 487 6.194967 CCCCTTAAACCCTTTCTTCATACAT 58.805 40.000 0.00 0.00 0.00 2.29
475 493 5.834742 TGTAAACCCCTTAAACCCTTTCTTC 59.165 40.000 0.00 0.00 0.00 2.87
479 497 5.874897 GTTGTAAACCCCTTAAACCCTTT 57.125 39.130 0.00 0.00 42.21 3.11
497 515 1.139058 AGTCTGCTTTCCACGAGTTGT 59.861 47.619 0.00 0.00 0.00 3.32
498 516 1.871080 AGTCTGCTTTCCACGAGTTG 58.129 50.000 0.00 0.00 0.00 3.16
499 517 2.628657 AGTAGTCTGCTTTCCACGAGTT 59.371 45.455 0.00 0.00 0.00 3.01
500 518 2.229302 GAGTAGTCTGCTTTCCACGAGT 59.771 50.000 0.00 0.00 0.00 4.18
501 519 2.416162 GGAGTAGTCTGCTTTCCACGAG 60.416 54.545 0.00 0.00 31.50 4.18
502 520 1.544691 GGAGTAGTCTGCTTTCCACGA 59.455 52.381 0.00 0.00 31.50 4.35
503 521 1.546476 AGGAGTAGTCTGCTTTCCACG 59.454 52.381 0.00 0.00 39.28 4.94
504 522 6.466885 TTATAGGAGTAGTCTGCTTTCCAC 57.533 41.667 0.00 0.00 42.25 4.02
505 523 6.098409 CCTTTATAGGAGTAGTCTGCTTTCCA 59.902 42.308 0.00 0.00 45.05 3.53
506 524 6.463190 CCCTTTATAGGAGTAGTCTGCTTTCC 60.463 46.154 0.00 0.00 45.05 3.13
507 525 6.098552 ACCCTTTATAGGAGTAGTCTGCTTTC 59.901 42.308 0.00 0.00 45.05 2.62
508 526 5.965091 ACCCTTTATAGGAGTAGTCTGCTTT 59.035 40.000 0.00 0.00 45.05 3.51
525 543 5.871834 TGCTGCTTAGTCTTAAACCCTTTA 58.128 37.500 0.00 0.00 0.00 1.85
532 550 4.991056 CACTGACTGCTGCTTAGTCTTAAA 59.009 41.667 17.62 1.25 43.79 1.52
539 557 2.277969 CATCCACTGACTGCTGCTTAG 58.722 52.381 0.00 0.00 0.00 2.18
542 560 1.376942 GCATCCACTGACTGCTGCT 60.377 57.895 0.00 0.00 33.15 4.24
546 564 0.539051 AGTAGGCATCCACTGACTGC 59.461 55.000 0.00 0.00 45.42 4.40
550 568 4.574674 ATTTGAAGTAGGCATCCACTGA 57.425 40.909 0.00 0.00 0.00 3.41
561 579 3.983344 GCTTGTGCACCAATTTGAAGTAG 59.017 43.478 15.69 0.00 39.41 2.57
583 601 4.171005 CCTACTTCAACATTGCTTGCATG 58.829 43.478 0.00 0.00 0.00 4.06
590 608 2.672195 GCCTTGCCTACTTCAACATTGC 60.672 50.000 0.00 0.00 0.00 3.56
613 631 5.712152 ATGAAGTTCTTCATCCCAAACAC 57.288 39.130 18.64 0.00 37.06 3.32
639 663 4.926832 ACGACATTACAATCACGATGAACA 59.073 37.500 0.00 0.00 0.00 3.18
669 701 9.297586 CAACTACACGTTACATATAATCACACT 57.702 33.333 0.00 0.00 33.63 3.55
678 710 9.031360 CAAGCTTATCAACTACACGTTACATAT 57.969 33.333 0.00 0.00 33.63 1.78
679 711 7.009815 GCAAGCTTATCAACTACACGTTACATA 59.990 37.037 0.00 0.00 33.63 2.29
680 712 6.183360 GCAAGCTTATCAACTACACGTTACAT 60.183 38.462 0.00 0.00 33.63 2.29
681 713 5.119588 GCAAGCTTATCAACTACACGTTACA 59.880 40.000 0.00 0.00 33.63 2.41
682 714 5.445540 GGCAAGCTTATCAACTACACGTTAC 60.446 44.000 0.00 0.00 33.63 2.50
686 727 3.000041 TGGCAAGCTTATCAACTACACG 59.000 45.455 0.00 0.00 0.00 4.49
711 752 9.145442 GGTCTACTTACCTTGTATCCTATTCTT 57.855 37.037 0.00 0.00 36.53 2.52
712 753 7.729431 GGGTCTACTTACCTTGTATCCTATTCT 59.271 40.741 0.00 0.00 39.65 2.40
716 757 6.345646 TGGGTCTACTTACCTTGTATCCTA 57.654 41.667 0.00 0.00 39.65 2.94
718 759 6.014755 GGTATGGGTCTACTTACCTTGTATCC 60.015 46.154 0.00 0.00 39.65 2.59
732 773 1.250328 CCGCGTATGGTATGGGTCTA 58.750 55.000 4.92 0.00 0.00 2.59
738 779 0.812014 TTGGCACCGCGTATGGTATG 60.812 55.000 4.92 0.00 41.38 2.39
739 780 0.531974 CTTGGCACCGCGTATGGTAT 60.532 55.000 4.92 0.00 41.38 2.73
740 781 1.153529 CTTGGCACCGCGTATGGTA 60.154 57.895 4.92 0.00 41.38 3.25
741 782 2.435938 CTTGGCACCGCGTATGGT 60.436 61.111 4.92 0.00 45.21 3.55
804 1193 1.406903 AAAGACTGCTGCCTGCTTTT 58.593 45.000 0.00 0.00 43.37 2.27
1010 1434 2.583593 GCAGCCACGAGGACGATC 60.584 66.667 1.86 0.00 42.66 3.69
1012 1436 4.056125 CAGCAGCCACGAGGACGA 62.056 66.667 1.86 0.00 42.66 4.20
1015 1439 1.670949 GAGATCAGCAGCCACGAGGA 61.671 60.000 1.86 0.00 36.89 3.71
1029 1453 1.906333 GGCGAGGAGGAGGGAGATC 60.906 68.421 0.00 0.00 0.00 2.75
1068 1492 1.364171 GCGGACGCTATCCTCACAT 59.636 57.895 9.76 0.00 46.69 3.21
1371 1795 4.147449 CGGTCGCTCCAGATGCCA 62.147 66.667 0.00 0.00 35.57 4.92
1449 3224 4.493747 GCGTCGAAGAGGACCCGG 62.494 72.222 1.37 0.00 46.48 5.73
1622 3427 0.815213 GTGCACTGTTCTGCTCACCA 60.815 55.000 10.32 0.00 38.07 4.17
1688 3493 3.699894 CCGACTCCTGCAGGCACT 61.700 66.667 28.91 12.14 43.88 4.40
1712 3517 2.879233 TTGAGGTCCCAGTCCACGC 61.879 63.158 0.00 0.00 0.00 5.34
1813 3618 3.428999 CCGGTATTGAGATCGTTGTCACT 60.429 47.826 0.00 0.00 0.00 3.41
1822 3627 4.500035 GGAGAACTCACCGGTATTGAGATC 60.500 50.000 23.31 20.41 42.81 2.75
1825 3630 2.761208 AGGAGAACTCACCGGTATTGAG 59.239 50.000 16.76 16.76 45.21 3.02
1829 3634 2.526888 TCAGGAGAACTCACCGGTAT 57.473 50.000 6.87 0.00 0.00 2.73
1832 3637 1.186200 TGATCAGGAGAACTCACCGG 58.814 55.000 0.00 0.00 0.00 5.28
1845 3650 8.182881 GTGAGAGGAAATTGAAAGATTGATCAG 58.817 37.037 0.00 0.00 0.00 2.90
1859 3664 5.278957 CCATTTTTGTCCGTGAGAGGAAATT 60.279 40.000 0.00 0.00 42.77 1.82
1860 3665 4.218417 CCATTTTTGTCCGTGAGAGGAAAT 59.782 41.667 0.00 0.00 42.77 2.17
1861 3666 3.568007 CCATTTTTGTCCGTGAGAGGAAA 59.432 43.478 0.00 0.00 42.77 3.13
1862 3667 3.146066 CCATTTTTGTCCGTGAGAGGAA 58.854 45.455 0.00 0.00 42.77 3.36
1863 3668 2.552155 CCCATTTTTGTCCGTGAGAGGA 60.552 50.000 0.00 0.00 38.11 3.71
1864 3669 1.812571 CCCATTTTTGTCCGTGAGAGG 59.187 52.381 0.00 0.00 0.00 3.69
1865 3670 2.504367 ACCCATTTTTGTCCGTGAGAG 58.496 47.619 0.00 0.00 0.00 3.20
1866 3671 2.621055 CAACCCATTTTTGTCCGTGAGA 59.379 45.455 0.00 0.00 0.00 3.27
1867 3672 2.862140 GCAACCCATTTTTGTCCGTGAG 60.862 50.000 0.00 0.00 0.00 3.51
1868 3673 1.067821 GCAACCCATTTTTGTCCGTGA 59.932 47.619 0.00 0.00 0.00 4.35
1869 3674 1.202463 TGCAACCCATTTTTGTCCGTG 60.202 47.619 0.00 0.00 0.00 4.94
1870 3675 1.115467 TGCAACCCATTTTTGTCCGT 58.885 45.000 0.00 0.00 0.00 4.69
1871 3676 2.029110 AGATGCAACCCATTTTTGTCCG 60.029 45.455 0.00 0.00 33.29 4.79
1872 3677 3.683365 AGATGCAACCCATTTTTGTCC 57.317 42.857 0.00 0.00 33.29 4.02
1873 3678 5.055812 TGAAAGATGCAACCCATTTTTGTC 58.944 37.500 0.00 0.00 38.09 3.18
1874 3679 5.033589 TGAAAGATGCAACCCATTTTTGT 57.966 34.783 0.00 0.00 38.09 2.83
1875 3680 5.122711 GGATGAAAGATGCAACCCATTTTTG 59.877 40.000 0.00 0.00 38.09 2.44
1876 3681 5.221884 TGGATGAAAGATGCAACCCATTTTT 60.222 36.000 0.00 0.00 39.96 1.94
1877 3682 4.286549 TGGATGAAAGATGCAACCCATTTT 59.713 37.500 0.00 0.00 33.29 1.82
1878 3683 3.839490 TGGATGAAAGATGCAACCCATTT 59.161 39.130 0.00 0.00 33.29 2.32
1879 3684 3.443052 TGGATGAAAGATGCAACCCATT 58.557 40.909 0.00 0.00 33.29 3.16
1880 3685 3.104519 TGGATGAAAGATGCAACCCAT 57.895 42.857 0.00 0.00 36.70 4.00
1881 3686 2.601240 TGGATGAAAGATGCAACCCA 57.399 45.000 0.00 0.00 0.00 4.51
1882 3687 3.959535 TTTGGATGAAAGATGCAACCC 57.040 42.857 0.00 0.00 0.00 4.11
1883 3688 3.674753 CGTTTTGGATGAAAGATGCAACC 59.325 43.478 0.00 0.00 0.00 3.77
1884 3689 4.298332 ACGTTTTGGATGAAAGATGCAAC 58.702 39.130 0.00 0.00 0.00 4.17
1885 3690 4.278170 AGACGTTTTGGATGAAAGATGCAA 59.722 37.500 0.00 0.00 0.00 4.08
1886 3691 3.820467 AGACGTTTTGGATGAAAGATGCA 59.180 39.130 0.00 0.00 0.00 3.96
1887 3692 4.083324 TGAGACGTTTTGGATGAAAGATGC 60.083 41.667 0.00 0.00 0.00 3.91
1888 3693 5.180117 AGTGAGACGTTTTGGATGAAAGATG 59.820 40.000 0.00 0.00 0.00 2.90
1889 3694 5.180117 CAGTGAGACGTTTTGGATGAAAGAT 59.820 40.000 0.00 0.00 0.00 2.40
1890 3695 4.511454 CAGTGAGACGTTTTGGATGAAAGA 59.489 41.667 0.00 0.00 0.00 2.52
1891 3696 4.511454 TCAGTGAGACGTTTTGGATGAAAG 59.489 41.667 0.00 0.00 0.00 2.62
1892 3697 4.447290 TCAGTGAGACGTTTTGGATGAAA 58.553 39.130 0.00 0.00 0.00 2.69
1893 3698 4.058124 CTCAGTGAGACGTTTTGGATGAA 58.942 43.478 15.46 0.00 0.00 2.57
1894 3699 3.320826 TCTCAGTGAGACGTTTTGGATGA 59.679 43.478 19.10 0.00 33.35 2.92
1895 3700 3.653344 TCTCAGTGAGACGTTTTGGATG 58.347 45.455 19.10 0.00 33.35 3.51
1906 3711 5.057149 GCCTTTAGTTTTGTCTCAGTGAGA 58.943 41.667 19.10 19.10 36.22 3.27
1907 3712 4.816385 TGCCTTTAGTTTTGTCTCAGTGAG 59.184 41.667 14.36 14.36 0.00 3.51
1908 3713 4.776349 TGCCTTTAGTTTTGTCTCAGTGA 58.224 39.130 0.00 0.00 0.00 3.41
1909 3714 5.239306 TGATGCCTTTAGTTTTGTCTCAGTG 59.761 40.000 0.00 0.00 0.00 3.66
1910 3715 5.239525 GTGATGCCTTTAGTTTTGTCTCAGT 59.760 40.000 0.00 0.00 0.00 3.41
1911 3716 5.335191 GGTGATGCCTTTAGTTTTGTCTCAG 60.335 44.000 0.00 0.00 0.00 3.35
1912 3717 4.518970 GGTGATGCCTTTAGTTTTGTCTCA 59.481 41.667 0.00 0.00 0.00 3.27
1913 3718 4.518970 TGGTGATGCCTTTAGTTTTGTCTC 59.481 41.667 0.00 0.00 38.35 3.36
1914 3719 4.469657 TGGTGATGCCTTTAGTTTTGTCT 58.530 39.130 0.00 0.00 38.35 3.41
1915 3720 4.846779 TGGTGATGCCTTTAGTTTTGTC 57.153 40.909 0.00 0.00 38.35 3.18
1916 3721 5.600696 CTTTGGTGATGCCTTTAGTTTTGT 58.399 37.500 0.00 0.00 38.35 2.83
1917 3722 4.448732 GCTTTGGTGATGCCTTTAGTTTTG 59.551 41.667 0.00 0.00 38.35 2.44
1918 3723 4.100808 TGCTTTGGTGATGCCTTTAGTTTT 59.899 37.500 0.00 0.00 38.35 2.43
1919 3724 3.640967 TGCTTTGGTGATGCCTTTAGTTT 59.359 39.130 0.00 0.00 38.35 2.66
1920 3725 3.230134 TGCTTTGGTGATGCCTTTAGTT 58.770 40.909 0.00 0.00 38.35 2.24
1921 3726 2.875296 TGCTTTGGTGATGCCTTTAGT 58.125 42.857 0.00 0.00 38.35 2.24
1922 3727 3.940209 TTGCTTTGGTGATGCCTTTAG 57.060 42.857 0.00 0.00 38.35 1.85
1923 3728 3.244044 GGTTTGCTTTGGTGATGCCTTTA 60.244 43.478 0.00 0.00 38.35 1.85
1924 3729 2.485302 GGTTTGCTTTGGTGATGCCTTT 60.485 45.455 0.00 0.00 38.35 3.11
1925 3730 1.070601 GGTTTGCTTTGGTGATGCCTT 59.929 47.619 0.00 0.00 38.35 4.35
1926 3731 0.681175 GGTTTGCTTTGGTGATGCCT 59.319 50.000 0.00 0.00 38.35 4.75
1927 3732 0.320683 GGGTTTGCTTTGGTGATGCC 60.321 55.000 0.00 0.00 37.90 4.40
1928 3733 0.681175 AGGGTTTGCTTTGGTGATGC 59.319 50.000 0.00 0.00 0.00 3.91
1929 3734 1.962807 TGAGGGTTTGCTTTGGTGATG 59.037 47.619 0.00 0.00 0.00 3.07
1930 3735 2.380064 TGAGGGTTTGCTTTGGTGAT 57.620 45.000 0.00 0.00 0.00 3.06
1931 3736 2.151502 TTGAGGGTTTGCTTTGGTGA 57.848 45.000 0.00 0.00 0.00 4.02
1932 3737 2.168313 ACTTTGAGGGTTTGCTTTGGTG 59.832 45.455 0.00 0.00 0.00 4.17
1933 3738 2.168313 CACTTTGAGGGTTTGCTTTGGT 59.832 45.455 0.00 0.00 0.00 3.67
1934 3739 2.825205 CACTTTGAGGGTTTGCTTTGG 58.175 47.619 0.00 0.00 0.00 3.28
1935 3740 2.204237 GCACTTTGAGGGTTTGCTTTG 58.796 47.619 0.00 0.00 0.00 2.77
1936 3741 1.830477 TGCACTTTGAGGGTTTGCTTT 59.170 42.857 0.00 0.00 34.18 3.51
1937 3742 1.484038 TGCACTTTGAGGGTTTGCTT 58.516 45.000 0.00 0.00 34.18 3.91
1938 3743 1.342174 CATGCACTTTGAGGGTTTGCT 59.658 47.619 0.00 0.00 34.18 3.91
1939 3744 1.340889 TCATGCACTTTGAGGGTTTGC 59.659 47.619 0.00 0.00 0.00 3.68
1940 3745 3.256383 TGATCATGCACTTTGAGGGTTTG 59.744 43.478 0.00 0.00 0.00 2.93
1941 3746 3.499338 TGATCATGCACTTTGAGGGTTT 58.501 40.909 0.00 0.00 0.00 3.27
1942 3747 3.159213 TGATCATGCACTTTGAGGGTT 57.841 42.857 0.00 0.00 0.00 4.11
1943 3748 2.885135 TGATCATGCACTTTGAGGGT 57.115 45.000 0.00 0.00 0.00 4.34
1944 3749 3.021695 ACATGATCATGCACTTTGAGGG 58.978 45.455 31.17 7.55 42.39 4.30
1945 3750 3.242641 CGACATGATCATGCACTTTGAGG 60.243 47.826 31.17 8.04 42.39 3.86
1946 3751 3.619929 TCGACATGATCATGCACTTTGAG 59.380 43.478 31.17 15.30 42.39 3.02
1947 3752 3.598299 TCGACATGATCATGCACTTTGA 58.402 40.909 31.17 19.34 42.39 2.69
1948 3753 3.373130 ACTCGACATGATCATGCACTTTG 59.627 43.478 31.17 17.57 42.39 2.77
1949 3754 3.603532 ACTCGACATGATCATGCACTTT 58.396 40.909 31.17 14.69 42.39 2.66
1950 3755 3.193263 GACTCGACATGATCATGCACTT 58.807 45.455 31.17 15.06 42.39 3.16
1951 3756 2.482664 GGACTCGACATGATCATGCACT 60.483 50.000 31.17 15.41 42.39 4.40
1952 3757 1.863454 GGACTCGACATGATCATGCAC 59.137 52.381 31.17 23.77 42.39 4.57
1953 3758 1.536709 CGGACTCGACATGATCATGCA 60.537 52.381 31.17 16.70 42.39 3.96
1954 3759 1.135046 CGGACTCGACATGATCATGC 58.865 55.000 31.17 22.70 42.39 4.06
1955 3760 1.338020 TCCGGACTCGACATGATCATG 59.662 52.381 29.95 29.95 44.15 3.07
1956 3761 1.338337 GTCCGGACTCGACATGATCAT 59.662 52.381 27.64 1.18 39.00 2.45
1957 3762 0.738975 GTCCGGACTCGACATGATCA 59.261 55.000 27.64 0.00 39.00 2.92
1958 3763 0.030908 GGTCCGGACTCGACATGATC 59.969 60.000 32.52 9.39 39.00 2.92
1959 3764 0.683179 TGGTCCGGACTCGACATGAT 60.683 55.000 32.52 0.00 39.00 2.45
1960 3765 1.303806 TGGTCCGGACTCGACATGA 60.304 57.895 32.52 4.69 39.00 3.07
1961 3766 1.153823 GTGGTCCGGACTCGACATG 60.154 63.158 32.52 0.00 39.00 3.21
1962 3767 0.898789 AAGTGGTCCGGACTCGACAT 60.899 55.000 32.52 17.10 39.00 3.06
1963 3768 1.111116 AAAGTGGTCCGGACTCGACA 61.111 55.000 32.52 19.75 39.00 4.35
1964 3769 0.033090 AAAAGTGGTCCGGACTCGAC 59.967 55.000 32.52 24.54 39.00 4.20
1965 3770 1.619654 TAAAAGTGGTCCGGACTCGA 58.380 50.000 32.52 15.20 39.00 4.04
1966 3771 2.094390 TGATAAAAGTGGTCCGGACTCG 60.094 50.000 32.52 0.00 0.00 4.18
1967 3772 3.604875 TGATAAAAGTGGTCCGGACTC 57.395 47.619 32.52 24.30 0.00 3.36
1968 3773 3.118371 GGATGATAAAAGTGGTCCGGACT 60.118 47.826 32.52 15.38 0.00 3.85
1969 3774 3.203716 GGATGATAAAAGTGGTCCGGAC 58.796 50.000 27.04 27.04 0.00 4.79
1970 3775 2.841266 TGGATGATAAAAGTGGTCCGGA 59.159 45.455 0.00 0.00 0.00 5.14
1971 3776 3.275617 TGGATGATAAAAGTGGTCCGG 57.724 47.619 0.00 0.00 0.00 5.14
1972 3777 4.513442 TCTTGGATGATAAAAGTGGTCCG 58.487 43.478 0.00 0.00 0.00 4.79
1973 3778 4.884164 CCTCTTGGATGATAAAAGTGGTCC 59.116 45.833 0.00 0.00 32.45 4.46
1974 3779 5.745227 TCCTCTTGGATGATAAAAGTGGTC 58.255 41.667 7.26 0.00 37.46 4.02
1975 3780 5.779241 TCCTCTTGGATGATAAAAGTGGT 57.221 39.130 7.26 0.00 37.46 4.16
1976 3781 5.591877 CCTTCCTCTTGGATGATAAAAGTGG 59.408 44.000 0.00 0.00 42.81 4.00
1977 3782 5.067023 GCCTTCCTCTTGGATGATAAAAGTG 59.933 44.000 0.00 0.00 42.81 3.16
1978 3783 5.196695 GCCTTCCTCTTGGATGATAAAAGT 58.803 41.667 0.00 0.00 42.81 2.66
1979 3784 5.195940 TGCCTTCCTCTTGGATGATAAAAG 58.804 41.667 0.00 0.00 42.81 2.27
1980 3785 5.191727 TGCCTTCCTCTTGGATGATAAAA 57.808 39.130 0.00 0.00 42.81 1.52
1981 3786 4.860802 TGCCTTCCTCTTGGATGATAAA 57.139 40.909 0.00 0.00 42.81 1.40
1982 3787 4.413189 TCATGCCTTCCTCTTGGATGATAA 59.587 41.667 0.00 0.00 42.81 1.75
1983 3788 3.975982 TCATGCCTTCCTCTTGGATGATA 59.024 43.478 0.00 0.00 42.81 2.15
1984 3789 2.781757 TCATGCCTTCCTCTTGGATGAT 59.218 45.455 0.00 0.00 42.81 2.45
1985 3790 2.092753 GTCATGCCTTCCTCTTGGATGA 60.093 50.000 0.00 0.00 42.81 2.92
1986 3791 2.295885 GTCATGCCTTCCTCTTGGATG 58.704 52.381 0.00 0.00 42.81 3.51
1987 3792 1.213926 GGTCATGCCTTCCTCTTGGAT 59.786 52.381 0.00 0.00 42.81 3.41
1988 3793 0.620556 GGTCATGCCTTCCTCTTGGA 59.379 55.000 0.00 0.00 41.36 3.53
1989 3794 0.329261 TGGTCATGCCTTCCTCTTGG 59.671 55.000 7.54 0.00 38.35 3.61
1990 3795 1.815003 GTTGGTCATGCCTTCCTCTTG 59.185 52.381 7.54 0.00 38.35 3.02
1991 3796 1.611673 CGTTGGTCATGCCTTCCTCTT 60.612 52.381 7.54 0.00 38.35 2.85
1992 3797 0.036010 CGTTGGTCATGCCTTCCTCT 60.036 55.000 7.54 0.00 38.35 3.69
1993 3798 1.648467 GCGTTGGTCATGCCTTCCTC 61.648 60.000 7.54 0.00 38.35 3.71
1994 3799 1.675641 GCGTTGGTCATGCCTTCCT 60.676 57.895 7.54 0.00 38.35 3.36
1995 3800 1.675641 AGCGTTGGTCATGCCTTCC 60.676 57.895 7.54 0.00 38.31 3.46
1996 3801 1.503542 CAGCGTTGGTCATGCCTTC 59.496 57.895 7.54 1.26 38.31 3.46
1997 3802 2.629656 GCAGCGTTGGTCATGCCTT 61.630 57.895 0.16 0.00 38.31 4.35
1998 3803 3.058160 GCAGCGTTGGTCATGCCT 61.058 61.111 0.16 0.00 38.31 4.75
1999 3804 3.364441 TGCAGCGTTGGTCATGCC 61.364 61.111 0.16 0.00 38.31 4.40
2000 3805 2.126734 GTGCAGCGTTGGTCATGC 60.127 61.111 0.16 0.00 39.14 4.06
2001 3806 0.952497 AGAGTGCAGCGTTGGTCATG 60.952 55.000 0.16 0.00 0.00 3.07
2002 3807 0.952497 CAGAGTGCAGCGTTGGTCAT 60.952 55.000 0.16 0.00 0.00 3.06
2003 3808 1.595109 CAGAGTGCAGCGTTGGTCA 60.595 57.895 0.16 0.00 0.00 4.02
2004 3809 2.320587 CCAGAGTGCAGCGTTGGTC 61.321 63.158 0.16 0.00 0.00 4.02
2005 3810 2.281070 CCAGAGTGCAGCGTTGGT 60.281 61.111 0.16 0.00 0.00 3.67
2006 3811 3.052082 CCCAGAGTGCAGCGTTGG 61.052 66.667 0.16 0.00 0.00 3.77
2007 3812 3.730761 GCCCAGAGTGCAGCGTTG 61.731 66.667 0.00 0.00 0.00 4.10
2012 3817 3.052082 CAACCGCCCAGAGTGCAG 61.052 66.667 0.00 0.00 0.00 4.41
2015 3820 2.743928 GAGCAACCGCCCAGAGTG 60.744 66.667 0.00 0.00 39.83 3.51
2016 3821 4.021925 GGAGCAACCGCCCAGAGT 62.022 66.667 0.00 0.00 39.83 3.24
2017 3822 4.020617 TGGAGCAACCGCCCAGAG 62.021 66.667 0.00 0.00 42.61 3.35
2024 3829 2.747855 GAAGGGCTGGAGCAACCG 60.748 66.667 0.20 0.00 44.36 4.44
2025 3830 1.973812 GTGAAGGGCTGGAGCAACC 60.974 63.158 0.20 0.00 44.36 3.77
2026 3831 0.610232 ATGTGAAGGGCTGGAGCAAC 60.610 55.000 0.20 0.00 44.36 4.17
2027 3832 0.322816 GATGTGAAGGGCTGGAGCAA 60.323 55.000 0.20 0.00 44.36 3.91
2028 3833 1.300963 GATGTGAAGGGCTGGAGCA 59.699 57.895 0.20 0.00 44.36 4.26
2029 3834 1.817099 CGATGTGAAGGGCTGGAGC 60.817 63.158 0.00 0.00 41.14 4.70
2030 3835 1.153289 CCGATGTGAAGGGCTGGAG 60.153 63.158 0.00 0.00 0.00 3.86
2031 3836 0.982852 ATCCGATGTGAAGGGCTGGA 60.983 55.000 0.00 0.00 0.00 3.86
2032 3837 0.107017 AATCCGATGTGAAGGGCTGG 60.107 55.000 0.00 0.00 0.00 4.85
2033 3838 1.402968 CAAATCCGATGTGAAGGGCTG 59.597 52.381 0.00 0.00 0.00 4.85
2034 3839 1.683011 CCAAATCCGATGTGAAGGGCT 60.683 52.381 0.00 0.00 0.00 5.19
2035 3840 0.740737 CCAAATCCGATGTGAAGGGC 59.259 55.000 0.00 0.00 0.00 5.19
2036 3841 1.745087 CACCAAATCCGATGTGAAGGG 59.255 52.381 0.00 0.00 0.00 3.95
2037 3842 1.745087 CCACCAAATCCGATGTGAAGG 59.255 52.381 0.00 0.00 0.00 3.46
2038 3843 1.133025 GCCACCAAATCCGATGTGAAG 59.867 52.381 0.00 0.00 0.00 3.02
2039 3844 1.173043 GCCACCAAATCCGATGTGAA 58.827 50.000 0.00 0.00 0.00 3.18
2040 3845 0.679640 GGCCACCAAATCCGATGTGA 60.680 55.000 0.00 0.00 0.00 3.58
2041 3846 0.964860 TGGCCACCAAATCCGATGTG 60.965 55.000 0.00 0.00 0.00 3.21
2042 3847 0.680921 CTGGCCACCAAATCCGATGT 60.681 55.000 0.00 0.00 30.80 3.06
2043 3848 0.394216 TCTGGCCACCAAATCCGATG 60.394 55.000 0.00 0.00 30.80 3.84
2044 3849 0.394352 GTCTGGCCACCAAATCCGAT 60.394 55.000 0.00 0.00 30.80 4.18
2045 3850 1.002624 GTCTGGCCACCAAATCCGA 60.003 57.895 0.00 0.00 30.80 4.55
2046 3851 0.251916 TAGTCTGGCCACCAAATCCG 59.748 55.000 0.00 0.00 30.80 4.18
2047 3852 2.507407 TTAGTCTGGCCACCAAATCC 57.493 50.000 0.00 0.00 30.80 3.01
2048 3853 4.864704 TTTTTAGTCTGGCCACCAAATC 57.135 40.909 0.00 0.00 30.80 2.17
2067 3872 1.203523 TCTGCAAGCAACACCGTTTTT 59.796 42.857 0.00 0.00 0.00 1.94
2068 3873 0.814457 TCTGCAAGCAACACCGTTTT 59.186 45.000 0.00 0.00 0.00 2.43
2069 3874 0.381801 CTCTGCAAGCAACACCGTTT 59.618 50.000 0.00 0.00 0.00 3.60
2070 3875 0.748005 ACTCTGCAAGCAACACCGTT 60.748 50.000 0.00 0.00 0.00 4.44
2071 3876 1.153168 ACTCTGCAAGCAACACCGT 60.153 52.632 0.00 0.00 0.00 4.83
2072 3877 1.280746 CACTCTGCAAGCAACACCG 59.719 57.895 0.00 0.00 0.00 4.94
2073 3878 0.819259 TCCACTCTGCAAGCAACACC 60.819 55.000 0.00 0.00 0.00 4.16
2074 3879 1.024271 TTCCACTCTGCAAGCAACAC 58.976 50.000 0.00 0.00 0.00 3.32
2075 3880 1.024271 GTTCCACTCTGCAAGCAACA 58.976 50.000 0.00 0.00 0.00 3.33
2076 3881 0.040958 CGTTCCACTCTGCAAGCAAC 60.041 55.000 0.00 0.00 0.00 4.17
2077 3882 0.179059 TCGTTCCACTCTGCAAGCAA 60.179 50.000 0.00 0.00 0.00 3.91
2078 3883 0.601046 CTCGTTCCACTCTGCAAGCA 60.601 55.000 0.00 0.00 0.00 3.91
2079 3884 1.905922 GCTCGTTCCACTCTGCAAGC 61.906 60.000 0.00 0.00 0.00 4.01
2080 3885 1.621301 CGCTCGTTCCACTCTGCAAG 61.621 60.000 0.00 0.00 0.00 4.01
2081 3886 1.664649 CGCTCGTTCCACTCTGCAA 60.665 57.895 0.00 0.00 0.00 4.08
2082 3887 2.049156 CGCTCGTTCCACTCTGCA 60.049 61.111 0.00 0.00 0.00 4.41
2083 3888 3.482783 GCGCTCGTTCCACTCTGC 61.483 66.667 0.00 0.00 0.00 4.26
2084 3889 1.373497 AAGCGCTCGTTCCACTCTG 60.373 57.895 12.06 0.00 0.00 3.35
2085 3890 1.373497 CAAGCGCTCGTTCCACTCT 60.373 57.895 12.06 0.00 0.00 3.24
2086 3891 3.016474 GCAAGCGCTCGTTCCACTC 62.016 63.158 12.06 0.00 34.30 3.51
2087 3892 3.044305 GCAAGCGCTCGTTCCACT 61.044 61.111 12.06 0.00 34.30 4.00
2088 3893 3.300667 CTGCAAGCGCTCGTTCCAC 62.301 63.158 12.06 0.00 39.64 4.02
2089 3894 3.043713 CTGCAAGCGCTCGTTCCA 61.044 61.111 12.06 2.69 39.64 3.53
2090 3895 2.734673 CTCTGCAAGCGCTCGTTCC 61.735 63.158 12.06 0.00 39.64 3.62
2091 3896 2.734673 CCTCTGCAAGCGCTCGTTC 61.735 63.158 12.06 0.21 39.64 3.95
2092 3897 2.740055 CCTCTGCAAGCGCTCGTT 60.740 61.111 12.06 0.00 39.64 3.85
2093 3898 3.639541 CTCCTCTGCAAGCGCTCGT 62.640 63.158 12.06 0.00 39.64 4.18
2094 3899 2.884685 CTCCTCTGCAAGCGCTCG 60.885 66.667 12.06 0.00 39.64 5.03
2095 3900 2.511145 CCTCCTCTGCAAGCGCTC 60.511 66.667 12.06 0.00 39.64 5.03
2096 3901 4.774503 GCCTCCTCTGCAAGCGCT 62.775 66.667 2.64 2.64 39.64 5.92
2097 3902 4.774503 AGCCTCCTCTGCAAGCGC 62.775 66.667 0.00 0.00 39.24 5.92
2098 3903 2.818714 CAGCCTCCTCTGCAAGCG 60.819 66.667 0.00 0.00 0.00 4.68
2110 3915 4.016790 TCAGGGAGGAGGCAGCCT 62.017 66.667 16.12 16.12 42.17 4.58
2111 3916 3.791586 GTCAGGGAGGAGGCAGCC 61.792 72.222 1.84 1.84 0.00 4.85
2112 3917 2.129555 TTTGTCAGGGAGGAGGCAGC 62.130 60.000 0.00 0.00 0.00 5.25
2113 3918 0.401738 TTTTGTCAGGGAGGAGGCAG 59.598 55.000 0.00 0.00 0.00 4.85
2114 3919 0.850100 TTTTTGTCAGGGAGGAGGCA 59.150 50.000 0.00 0.00 0.00 4.75
2115 3920 1.202940 ACTTTTTGTCAGGGAGGAGGC 60.203 52.381 0.00 0.00 0.00 4.70
2116 3921 2.784347 GACTTTTTGTCAGGGAGGAGG 58.216 52.381 0.00 0.00 44.73 4.30
2117 3922 2.417719 CGACTTTTTGTCAGGGAGGAG 58.582 52.381 0.00 0.00 45.60 3.69
2118 3923 1.542547 GCGACTTTTTGTCAGGGAGGA 60.543 52.381 0.00 0.00 45.60 3.71
2119 3924 0.875059 GCGACTTTTTGTCAGGGAGG 59.125 55.000 0.00 0.00 45.60 4.30
2120 3925 1.884235 AGCGACTTTTTGTCAGGGAG 58.116 50.000 0.00 0.00 45.60 4.30
2121 3926 2.218603 GAAGCGACTTTTTGTCAGGGA 58.781 47.619 0.00 0.00 45.60 4.20
2122 3927 1.946768 TGAAGCGACTTTTTGTCAGGG 59.053 47.619 0.00 0.00 45.60 4.45
2123 3928 2.603173 GCTGAAGCGACTTTTTGTCAGG 60.603 50.000 0.00 0.00 45.60 3.86
2124 3929 2.289002 AGCTGAAGCGACTTTTTGTCAG 59.711 45.455 0.00 0.00 45.60 3.51
2125 3930 2.287915 GAGCTGAAGCGACTTTTTGTCA 59.712 45.455 0.00 0.00 45.60 3.58
2137 3942 0.389025 GGCTAGGAGAGAGCTGAAGC 59.611 60.000 0.00 0.00 39.98 3.86
2138 3943 1.774110 TGGCTAGGAGAGAGCTGAAG 58.226 55.000 0.00 0.00 39.98 3.02
2139 3944 2.238084 TTGGCTAGGAGAGAGCTGAA 57.762 50.000 0.00 0.00 39.98 3.02
2140 3945 2.037901 CATTGGCTAGGAGAGAGCTGA 58.962 52.381 0.00 0.00 39.98 4.26
2141 3946 1.761784 ACATTGGCTAGGAGAGAGCTG 59.238 52.381 0.00 0.00 39.98 4.24
2142 3947 2.038659 GACATTGGCTAGGAGAGAGCT 58.961 52.381 0.00 0.00 39.98 4.09
2143 3948 1.759445 TGACATTGGCTAGGAGAGAGC 59.241 52.381 0.00 0.00 39.33 4.09
2144 3949 3.244146 CCATGACATTGGCTAGGAGAGAG 60.244 52.174 0.00 0.00 0.00 3.20
2145 3950 2.702478 CCATGACATTGGCTAGGAGAGA 59.298 50.000 0.00 0.00 0.00 3.10
2146 3951 3.123157 CCATGACATTGGCTAGGAGAG 57.877 52.381 0.00 0.00 0.00 3.20
2155 3960 0.452987 CGAGGTTGCCATGACATTGG 59.547 55.000 0.00 0.00 39.94 3.16
2156 3961 0.452987 CCGAGGTTGCCATGACATTG 59.547 55.000 0.00 0.00 0.00 2.82
2157 3962 1.315257 GCCGAGGTTGCCATGACATT 61.315 55.000 0.00 0.00 0.00 2.71
2158 3963 1.750399 GCCGAGGTTGCCATGACAT 60.750 57.895 0.00 0.00 0.00 3.06
2159 3964 2.359850 GCCGAGGTTGCCATGACA 60.360 61.111 0.00 0.00 0.00 3.58
2160 3965 1.675641 AAGCCGAGGTTGCCATGAC 60.676 57.895 0.00 0.00 0.00 3.06
2161 3966 1.675310 CAAGCCGAGGTTGCCATGA 60.675 57.895 0.00 0.00 34.35 3.07
2162 3967 2.879907 CAAGCCGAGGTTGCCATG 59.120 61.111 3.49 0.00 34.35 3.66
2167 3972 1.197721 CTGTAAAGCAAGCCGAGGTTG 59.802 52.381 10.31 10.31 42.93 3.77
2168 3973 1.523758 CTGTAAAGCAAGCCGAGGTT 58.476 50.000 0.00 0.00 0.00 3.50
2169 3974 0.955919 GCTGTAAAGCAAGCCGAGGT 60.956 55.000 0.00 0.00 34.41 3.85
2170 3975 0.955428 TGCTGTAAAGCAAGCCGAGG 60.955 55.000 4.70 0.00 42.40 4.63
2171 3976 2.543578 TGCTGTAAAGCAAGCCGAG 58.456 52.632 4.70 0.00 42.40 4.63
2172 3977 4.789977 TGCTGTAAAGCAAGCCGA 57.210 50.000 4.70 0.00 42.40 5.54
2179 3984 1.020437 GGCTGGAGATGCTGTAAAGC 58.980 55.000 0.00 0.00 0.00 3.51
2180 3985 1.293924 CGGCTGGAGATGCTGTAAAG 58.706 55.000 0.00 0.00 32.57 1.85
2181 3986 0.744414 GCGGCTGGAGATGCTGTAAA 60.744 55.000 0.00 0.00 38.90 2.01
2185 3990 2.203167 ATGCGGCTGGAGATGCTG 60.203 61.111 0.00 0.00 39.61 4.41
2578 4434 0.763035 GAGGGCCCGGCTTTTATAGA 59.237 55.000 18.44 0.00 0.00 1.98
2617 4475 1.450312 GTTCTGTGGCGATGGAGGG 60.450 63.158 0.00 0.00 0.00 4.30
2618 4476 1.450312 GGTTCTGTGGCGATGGAGG 60.450 63.158 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.