Multiple sequence alignment - TraesCS3D01G116200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G116200 chr3D 100.000 4657 0 0 1 4657 69669250 69673906 0.000000e+00 8600
1 TraesCS3D01G116200 chr3D 90.775 542 26 8 1 532 69657081 69657608 0.000000e+00 702
2 TraesCS3D01G116200 chr3D 85.118 551 82 0 2308 2858 69671467 69672017 8.750000e-157 564
3 TraesCS3D01G116200 chr3D 85.118 551 82 0 2218 2768 69671557 69672107 8.750000e-157 564
4 TraesCS3D01G116200 chr3D 86.758 438 58 0 2402 2839 69671471 69671908 5.420000e-134 488
5 TraesCS3D01G116200 chr3D 86.758 438 58 0 2222 2659 69671651 69672088 5.420000e-134 488
6 TraesCS3D01G116200 chr3D 88.268 179 13 4 459 630 330800828 330801005 1.700000e-49 207
7 TraesCS3D01G116200 chr3D 87.719 171 20 1 455 625 130237636 130237467 1.020000e-46 198
8 TraesCS3D01G116200 chr3D 84.694 196 16 8 87 272 463681523 463681714 2.860000e-42 183
9 TraesCS3D01G116200 chr3D 84.343 198 16 10 84 271 67649038 67649230 3.700000e-41 180
10 TraesCS3D01G116200 chr3B 91.010 3793 245 40 709 4459 115545688 115549426 0.000000e+00 5027
11 TraesCS3D01G116200 chr3B 86.652 457 61 0 2402 2858 115547228 115547684 1.500000e-139 507
12 TraesCS3D01G116200 chr3B 83.794 543 73 11 2218 2754 115547314 115547847 6.960000e-138 501
13 TraesCS3D01G116200 chr3B 85.622 466 32 16 7 457 115545208 115545653 1.530000e-124 457
14 TraesCS3D01G116200 chr3B 83.973 443 68 1 2222 2664 115547408 115547847 5.570000e-114 422
15 TraesCS3D01G116200 chr3B 100.000 59 0 0 4443 4501 115549872 115549930 4.930000e-20 110
16 TraesCS3D01G116200 chr3A 90.012 3284 208 53 699 3934 81085967 81089178 0.000000e+00 4137
17 TraesCS3D01G116200 chr3A 90.704 355 25 4 3968 4317 81089420 81089771 2.540000e-127 466
18 TraesCS3D01G116200 chr3A 83.007 459 57 10 2400 2858 81087508 81087945 3.380000e-106 396
19 TraesCS3D01G116200 chr3A 80.185 540 80 8 2218 2754 81087596 81088111 3.400000e-101 379
20 TraesCS3D01G116200 chr3A 94.558 147 7 1 4408 4554 81089772 81089917 4.690000e-55 226
21 TraesCS3D01G116200 chr3A 100.000 60 0 0 4598 4657 81089916 81089975 1.370000e-20 111
22 TraesCS3D01G116200 chr4A 89.888 267 17 5 445 703 360642760 360642496 7.470000e-88 335
23 TraesCS3D01G116200 chr4A 91.532 248 12 3 459 699 615435034 615435279 2.690000e-87 333
24 TraesCS3D01G116200 chr7A 90.234 256 16 3 453 701 556161086 556161339 4.490000e-85 326
25 TraesCS3D01G116200 chr1A 88.722 266 19 5 451 708 281364540 281364802 9.730000e-82 315
26 TraesCS3D01G116200 chr1A 90.638 235 13 4 456 683 30192376 30192608 2.110000e-78 303
27 TraesCS3D01G116200 chr2D 88.136 236 22 4 459 693 575621726 575621496 4.590000e-70 276
28 TraesCS3D01G116200 chr2D 86.957 230 25 5 459 683 336958437 336958666 2.150000e-63 254
29 TraesCS3D01G116200 chr2D 85.204 196 16 8 87 272 391287090 391287282 6.150000e-44 189
30 TraesCS3D01G116200 chr2A 86.777 242 27 2 455 693 613419288 613419049 9.940000e-67 265
31 TraesCS3D01G116200 chr5D 86.387 191 21 4 506 694 554758190 554758003 2.200000e-48 204
32 TraesCS3D01G116200 chr1B 88.372 172 14 4 459 630 274038558 274038723 7.900000e-48 202
33 TraesCS3D01G116200 chr5B 85.787 197 14 9 86 272 671868247 671868055 3.680000e-46 196
34 TraesCS3D01G116200 chr5B 85.789 190 11 8 93 272 41092676 41092859 2.210000e-43 187
35 TraesCS3D01G116200 chr5B 83.920 199 18 9 84 272 682361234 682361040 1.330000e-40 178
36 TraesCS3D01G116200 chr6B 85.204 196 15 8 87 272 84603470 84603279 6.150000e-44 189
37 TraesCS3D01G116200 chr4B 84.772 197 16 9 86 272 12242260 12242452 7.960000e-43 185


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G116200 chr3D 69669250 69673906 4656 False 2140.800000 8600 88.750400 1 4657 5 chr3D.!!$F5 4656
1 TraesCS3D01G116200 chr3D 69657081 69657608 527 False 702.000000 702 90.775000 1 532 1 chr3D.!!$F2 531
2 TraesCS3D01G116200 chr3B 115545208 115549930 4722 False 1170.666667 5027 88.508500 7 4501 6 chr3B.!!$F1 4494
3 TraesCS3D01G116200 chr3A 81085967 81089975 4008 False 952.500000 4137 89.744333 699 4657 6 chr3A.!!$F1 3958

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
597 613 0.091344 CTAAACGTGTTGAGCGCTCG 59.909 55.0 30.75 21.89 0.00 5.03 F
2178 2218 0.250295 CTGAAGCGTCCAAGGACCAA 60.250 55.0 13.35 0.00 41.76 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2591 2658 0.177604 ATCGGAGAGCTTCTTGCAGG 59.822 55.0 0.0 0.0 43.63 4.85 R
3666 3736 1.173913 TCGGCAGATTCTTCTCGTCA 58.826 50.0 0.0 0.0 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 65 4.947645 TGCAAAGTTTCTCAAAGGAATGG 58.052 39.130 0.00 0.00 0.00 3.16
137 139 5.920273 CCAATACAGCGAACACAAGAAAAAT 59.080 36.000 0.00 0.00 0.00 1.82
172 174 5.386060 ACATCCAGATTCGTAGATCACCTA 58.614 41.667 0.00 0.00 35.04 3.08
190 192 3.181478 ACCTAGCGACAAGTATAAGCACC 60.181 47.826 0.00 0.00 0.00 5.01
278 290 2.029486 CGGAAAGTCGTCGTGAAAACAA 59.971 45.455 0.00 0.00 0.00 2.83
447 463 4.324563 CCTCAGTTTGGGTCCTCACAATAT 60.325 45.833 0.00 0.00 36.80 1.28
497 513 5.157781 GCAATGCACGTTAATTTGGAAGTA 58.842 37.500 0.00 0.00 0.00 2.24
500 516 7.044314 GCAATGCACGTTAATTTGGAAGTATAC 60.044 37.037 0.00 0.00 0.00 1.47
525 541 4.569943 AGTGCATGCGGATATTAAGTAGG 58.430 43.478 14.09 0.00 0.00 3.18
532 548 9.542462 GCATGCGGATATTAAGTAGGATATTAA 57.458 33.333 0.00 0.00 0.00 1.40
571 587 8.406730 TGTGATTAGCATTATATTTGGCATGA 57.593 30.769 0.00 0.00 0.00 3.07
572 588 8.298854 TGTGATTAGCATTATATTTGGCATGAC 58.701 33.333 0.00 0.00 0.00 3.06
573 589 7.482743 GTGATTAGCATTATATTTGGCATGACG 59.517 37.037 0.00 0.00 0.00 4.35
574 590 4.164822 AGCATTATATTTGGCATGACGC 57.835 40.909 0.00 0.00 41.28 5.19
575 591 3.569277 AGCATTATATTTGGCATGACGCA 59.431 39.130 0.00 0.00 45.17 5.24
576 592 3.670055 GCATTATATTTGGCATGACGCAC 59.330 43.478 0.00 0.00 45.17 5.34
577 593 4.792380 GCATTATATTTGGCATGACGCACA 60.792 41.667 0.00 0.00 45.17 4.57
578 594 2.849880 ATATTTGGCATGACGCACAC 57.150 45.000 0.00 0.00 45.17 3.82
579 595 1.819928 TATTTGGCATGACGCACACT 58.180 45.000 0.00 0.00 45.17 3.55
580 596 1.819928 ATTTGGCATGACGCACACTA 58.180 45.000 0.00 0.00 45.17 2.74
581 597 1.598882 TTTGGCATGACGCACACTAA 58.401 45.000 0.00 0.00 45.17 2.24
582 598 1.598882 TTGGCATGACGCACACTAAA 58.401 45.000 0.00 0.00 45.17 1.85
583 599 0.871722 TGGCATGACGCACACTAAAC 59.128 50.000 0.00 0.00 45.17 2.01
584 600 0.179225 GGCATGACGCACACTAAACG 60.179 55.000 0.00 0.00 45.17 3.60
585 601 0.511221 GCATGACGCACACTAAACGT 59.489 50.000 0.00 0.00 43.83 3.99
586 602 4.845990 GGCATGACGCACACTAAACGTG 62.846 54.545 0.00 0.00 45.17 4.49
594 610 3.345087 CACTAAACGTGTTGAGCGC 57.655 52.632 0.00 0.00 38.84 5.92
595 611 0.859232 CACTAAACGTGTTGAGCGCT 59.141 50.000 11.27 11.27 38.84 5.92
596 612 1.136611 CACTAAACGTGTTGAGCGCTC 60.137 52.381 30.42 30.42 38.84 5.03
597 613 0.091344 CTAAACGTGTTGAGCGCTCG 59.909 55.000 30.75 21.89 0.00 5.03
598 614 0.318022 TAAACGTGTTGAGCGCTCGA 60.318 50.000 30.75 27.40 0.00 4.04
599 615 1.818221 AAACGTGTTGAGCGCTCGAC 61.818 55.000 39.44 39.44 42.86 4.20
603 619 3.804601 TGTTGAGCGCTCGACATAA 57.195 47.368 42.95 28.13 46.09 1.90
604 620 2.073117 TGTTGAGCGCTCGACATAAA 57.927 45.000 42.95 27.81 46.09 1.40
605 621 2.409012 TGTTGAGCGCTCGACATAAAA 58.591 42.857 42.95 27.49 46.09 1.52
606 622 2.411748 TGTTGAGCGCTCGACATAAAAG 59.588 45.455 42.95 0.00 46.09 2.27
607 623 0.999406 TGAGCGCTCGACATAAAAGC 59.001 50.000 30.75 5.13 0.00 3.51
608 624 0.999406 GAGCGCTCGACATAAAAGCA 59.001 50.000 23.61 0.00 35.76 3.91
609 625 1.002366 AGCGCTCGACATAAAAGCAG 58.998 50.000 2.64 0.00 35.76 4.24
610 626 0.721718 GCGCTCGACATAAAAGCAGT 59.278 50.000 0.00 0.00 35.76 4.40
611 627 1.267087 GCGCTCGACATAAAAGCAGTC 60.267 52.381 0.00 0.00 35.76 3.51
612 628 2.263077 CGCTCGACATAAAAGCAGTCT 58.737 47.619 0.00 0.00 35.76 3.24
613 629 3.435566 CGCTCGACATAAAAGCAGTCTA 58.564 45.455 0.00 0.00 35.76 2.59
614 630 4.045104 CGCTCGACATAAAAGCAGTCTAT 58.955 43.478 0.00 0.00 35.76 1.98
615 631 5.212934 CGCTCGACATAAAAGCAGTCTATA 58.787 41.667 0.00 0.00 35.76 1.31
616 632 5.859114 CGCTCGACATAAAAGCAGTCTATAT 59.141 40.000 0.00 0.00 35.76 0.86
617 633 6.032985 CGCTCGACATAAAAGCAGTCTATATC 59.967 42.308 0.00 0.00 35.76 1.63
618 634 6.032985 GCTCGACATAAAAGCAGTCTATATCG 59.967 42.308 0.00 0.00 36.06 2.92
619 635 6.967135 TCGACATAAAAGCAGTCTATATCGT 58.033 36.000 0.00 0.00 0.00 3.73
620 636 7.423199 TCGACATAAAAGCAGTCTATATCGTT 58.577 34.615 0.00 0.00 0.00 3.85
621 637 7.378728 TCGACATAAAAGCAGTCTATATCGTTG 59.621 37.037 0.00 0.00 0.00 4.10
622 638 7.358435 CGACATAAAAGCAGTCTATATCGTTGG 60.358 40.741 0.00 0.00 0.00 3.77
623 639 7.497595 ACATAAAAGCAGTCTATATCGTTGGA 58.502 34.615 0.00 0.00 0.00 3.53
624 640 8.150945 ACATAAAAGCAGTCTATATCGTTGGAT 58.849 33.333 0.00 0.00 36.65 3.41
625 641 8.993121 CATAAAAGCAGTCTATATCGTTGGATT 58.007 33.333 0.00 0.00 34.00 3.01
626 642 6.851222 AAAGCAGTCTATATCGTTGGATTG 57.149 37.500 0.00 0.00 34.00 2.67
627 643 5.791336 AGCAGTCTATATCGTTGGATTGA 57.209 39.130 0.00 0.00 34.00 2.57
628 644 5.533482 AGCAGTCTATATCGTTGGATTGAC 58.467 41.667 0.00 0.00 34.00 3.18
629 645 5.069119 AGCAGTCTATATCGTTGGATTGACA 59.931 40.000 0.00 0.00 33.03 3.58
630 646 5.928839 GCAGTCTATATCGTTGGATTGACAT 59.071 40.000 0.00 0.00 33.03 3.06
631 647 6.128715 GCAGTCTATATCGTTGGATTGACATG 60.129 42.308 0.00 0.00 33.03 3.21
632 648 7.147976 CAGTCTATATCGTTGGATTGACATGA 58.852 38.462 0.00 0.00 33.03 3.07
633 649 7.816513 CAGTCTATATCGTTGGATTGACATGAT 59.183 37.037 0.00 0.00 33.03 2.45
634 650 8.370940 AGTCTATATCGTTGGATTGACATGATT 58.629 33.333 0.00 0.00 33.03 2.57
635 651 8.993121 GTCTATATCGTTGGATTGACATGATTT 58.007 33.333 0.00 0.00 34.00 2.17
636 652 8.992073 TCTATATCGTTGGATTGACATGATTTG 58.008 33.333 0.00 0.00 34.00 2.32
637 653 7.806409 ATATCGTTGGATTGACATGATTTGA 57.194 32.000 0.00 0.00 34.00 2.69
638 654 6.704289 ATCGTTGGATTGACATGATTTGAT 57.296 33.333 0.00 0.00 0.00 2.57
639 655 5.882553 TCGTTGGATTGACATGATTTGATG 58.117 37.500 0.00 0.00 0.00 3.07
640 656 5.415389 TCGTTGGATTGACATGATTTGATGT 59.585 36.000 0.00 0.00 39.34 3.06
648 664 5.998454 GACATGATTTGATGTCCGAGATT 57.002 39.130 0.00 0.00 44.44 2.40
650 666 7.482654 GACATGATTTGATGTCCGAGATTAA 57.517 36.000 0.00 0.00 44.44 1.40
651 667 8.092521 GACATGATTTGATGTCCGAGATTAAT 57.907 34.615 0.00 0.00 44.44 1.40
652 668 8.455903 ACATGATTTGATGTCCGAGATTAATT 57.544 30.769 0.00 0.00 30.34 1.40
653 669 8.347771 ACATGATTTGATGTCCGAGATTAATTG 58.652 33.333 0.00 0.00 30.34 2.32
654 670 7.263100 TGATTTGATGTCCGAGATTAATTGG 57.737 36.000 0.00 0.00 0.00 3.16
655 671 7.053498 TGATTTGATGTCCGAGATTAATTGGA 58.947 34.615 0.00 0.00 0.00 3.53
656 672 7.720957 TGATTTGATGTCCGAGATTAATTGGAT 59.279 33.333 7.90 0.00 35.15 3.41
657 673 7.496529 TTTGATGTCCGAGATTAATTGGATC 57.503 36.000 7.90 4.55 35.15 3.36
658 674 6.425210 TGATGTCCGAGATTAATTGGATCT 57.575 37.500 7.90 6.01 35.15 2.75
659 675 6.226052 TGATGTCCGAGATTAATTGGATCTG 58.774 40.000 9.96 4.52 35.15 2.90
660 676 4.380531 TGTCCGAGATTAATTGGATCTGC 58.619 43.478 9.96 3.47 35.15 4.26
661 677 3.748568 GTCCGAGATTAATTGGATCTGCC 59.251 47.826 9.96 0.00 35.15 4.85
662 678 3.648067 TCCGAGATTAATTGGATCTGCCT 59.352 43.478 9.96 0.00 34.13 4.75
663 679 3.999663 CCGAGATTAATTGGATCTGCCTC 59.000 47.826 9.96 0.00 34.13 4.70
664 680 4.262808 CCGAGATTAATTGGATCTGCCTCT 60.263 45.833 9.96 0.00 34.13 3.69
665 681 5.303971 CGAGATTAATTGGATCTGCCTCTT 58.696 41.667 9.96 0.00 34.13 2.85
666 682 5.762218 CGAGATTAATTGGATCTGCCTCTTT 59.238 40.000 9.96 0.00 34.13 2.52
667 683 6.293298 CGAGATTAATTGGATCTGCCTCTTTG 60.293 42.308 9.96 0.00 34.13 2.77
668 684 5.832060 AGATTAATTGGATCTGCCTCTTTGG 59.168 40.000 5.62 0.00 37.63 3.28
669 685 2.449137 ATTGGATCTGCCTCTTTGGG 57.551 50.000 0.00 0.00 37.63 4.12
670 686 1.075601 TTGGATCTGCCTCTTTGGGT 58.924 50.000 0.00 0.00 37.63 4.51
671 687 0.620556 TGGATCTGCCTCTTTGGGTC 59.379 55.000 0.00 0.00 37.63 4.46
672 688 0.915364 GGATCTGCCTCTTTGGGTCT 59.085 55.000 0.00 0.00 36.00 3.85
673 689 1.283321 GGATCTGCCTCTTTGGGTCTT 59.717 52.381 0.00 0.00 36.00 3.01
674 690 2.291217 GGATCTGCCTCTTTGGGTCTTT 60.291 50.000 0.00 0.00 36.00 2.52
675 691 3.425659 GATCTGCCTCTTTGGGTCTTTT 58.574 45.455 0.00 0.00 36.00 2.27
676 692 3.312736 TCTGCCTCTTTGGGTCTTTTT 57.687 42.857 0.00 0.00 36.00 1.94
677 693 4.447138 TCTGCCTCTTTGGGTCTTTTTA 57.553 40.909 0.00 0.00 36.00 1.52
678 694 4.998051 TCTGCCTCTTTGGGTCTTTTTAT 58.002 39.130 0.00 0.00 36.00 1.40
679 695 6.134535 TCTGCCTCTTTGGGTCTTTTTATA 57.865 37.500 0.00 0.00 36.00 0.98
680 696 6.731467 TCTGCCTCTTTGGGTCTTTTTATAT 58.269 36.000 0.00 0.00 36.00 0.86
681 697 7.182060 TCTGCCTCTTTGGGTCTTTTTATATT 58.818 34.615 0.00 0.00 36.00 1.28
682 698 7.122650 TCTGCCTCTTTGGGTCTTTTTATATTG 59.877 37.037 0.00 0.00 36.00 1.90
683 699 6.951198 TGCCTCTTTGGGTCTTTTTATATTGA 59.049 34.615 0.00 0.00 36.00 2.57
684 700 7.619302 TGCCTCTTTGGGTCTTTTTATATTGAT 59.381 33.333 0.00 0.00 36.00 2.57
685 701 8.478066 GCCTCTTTGGGTCTTTTTATATTGATT 58.522 33.333 0.00 0.00 36.00 2.57
760 776 2.162681 GGAGCTGCAGCCTTAAAAAGA 58.837 47.619 34.39 0.00 43.38 2.52
765 781 2.297033 CTGCAGCCTTAAAAAGAGCCAA 59.703 45.455 0.00 0.00 0.00 4.52
774 790 6.101997 CCTTAAAAAGAGCCAATTCACATCC 58.898 40.000 0.00 0.00 0.00 3.51
806 824 1.303317 AAGCCGCTCCCAAAACGAT 60.303 52.632 0.00 0.00 0.00 3.73
862 887 2.813179 CGCGCCATCCCTCGAAAAG 61.813 63.158 0.00 0.00 0.00 2.27
907 934 1.802636 CGCCGCCACAATTTCATCT 59.197 52.632 0.00 0.00 0.00 2.90
921 948 0.679505 TCATCTCTAAATCGCCCCCG 59.320 55.000 0.00 0.00 0.00 5.73
937 964 3.556625 CGAATGACGGCGAACCAA 58.443 55.556 16.62 0.00 38.46 3.67
938 965 1.419922 CGAATGACGGCGAACCAAG 59.580 57.895 16.62 0.00 38.46 3.61
989 1016 2.414824 CGGCCGGATTCGAAATTTCAAA 60.415 45.455 20.10 6.51 39.00 2.69
992 1019 3.507786 CCGGATTCGAAATTTCAAACCC 58.492 45.455 17.99 5.58 39.00 4.11
1002 1039 5.560567 CGAAATTTCAAACCCAAAAGCCATG 60.561 40.000 17.99 0.00 0.00 3.66
1020 1058 0.610785 TGGCGTTCCCTTCCATTTCC 60.611 55.000 0.00 0.00 0.00 3.13
1024 1062 1.474330 GTTCCCTTCCATTTCCGCAT 58.526 50.000 0.00 0.00 0.00 4.73
1025 1063 1.824852 GTTCCCTTCCATTTCCGCATT 59.175 47.619 0.00 0.00 0.00 3.56
1026 1064 2.230130 TCCCTTCCATTTCCGCATTT 57.770 45.000 0.00 0.00 0.00 2.32
1027 1065 2.099405 TCCCTTCCATTTCCGCATTTC 58.901 47.619 0.00 0.00 0.00 2.17
1028 1066 1.202290 CCCTTCCATTTCCGCATTTCG 60.202 52.381 0.00 0.00 38.08 3.46
1049 1087 4.148825 CTCTTCCTCCCACCGCCG 62.149 72.222 0.00 0.00 0.00 6.46
1068 1106 1.657822 GCCTCCTCCTCAAATTCGTC 58.342 55.000 0.00 0.00 0.00 4.20
1076 1114 4.383552 CCTCCTCAAATTCGTCTCTCCAAT 60.384 45.833 0.00 0.00 0.00 3.16
1108 1146 1.445942 GCCTCGATTCCAATCCCGA 59.554 57.895 0.00 0.00 31.68 5.14
1111 1149 2.213499 CCTCGATTCCAATCCCGAAAG 58.787 52.381 0.00 0.00 31.68 2.62
1117 1155 4.674362 CGATTCCAATCCCGAAAGTTTTCC 60.674 45.833 0.00 0.00 31.34 3.13
1190 1228 2.664851 CACCGCGAGCCTGTTTCA 60.665 61.111 8.23 0.00 0.00 2.69
1197 1235 1.293924 CGAGCCTGTTTCATAGCCAG 58.706 55.000 0.00 0.00 0.00 4.85
1240 1280 4.240103 CGCCCATGGAGATCGCCA 62.240 66.667 21.16 21.16 43.23 5.69
1328 1368 3.470888 CTCCAACCTCGGGCCGAT 61.471 66.667 31.23 13.56 34.61 4.18
1452 1492 4.147449 CTGGATGCCGTCTCGCCA 62.147 66.667 0.00 0.00 0.00 5.69
1550 1590 2.124942 CAAGAAGCCTCCCCTCGC 60.125 66.667 0.00 0.00 0.00 5.03
1565 1605 2.048222 CGCTCCGGTGAAGAAGCA 60.048 61.111 7.92 0.00 0.00 3.91
1571 1611 2.372690 CGGTGAAGAAGCACGTCGG 61.373 63.158 0.00 0.00 39.66 4.79
1617 1657 2.100631 CAACGCCACTCCATCCGTC 61.101 63.158 0.00 0.00 32.89 4.79
1672 1712 1.375268 GAGTTCGCTGCTGCTCCTT 60.375 57.895 14.03 0.00 36.97 3.36
1676 1716 4.399395 CGCTGCTGCTCCTTCCCA 62.399 66.667 14.03 0.00 36.97 4.37
1857 1897 4.256180 CCCCTGGGATACGCTGCC 62.256 72.222 16.20 0.00 37.50 4.85
2047 2087 1.153289 CAGTTCATCCCGCCCTCTG 60.153 63.158 0.00 0.00 0.00 3.35
2056 2096 2.202987 CGCCCTCTGCATCTCCAC 60.203 66.667 0.00 0.00 41.33 4.02
2058 2098 2.673200 GCCCTCTGCATCTCCACCA 61.673 63.158 0.00 0.00 40.77 4.17
2059 2099 1.992519 GCCCTCTGCATCTCCACCAT 61.993 60.000 0.00 0.00 40.77 3.55
2078 2118 1.661463 TTGAAGTCAGATGGGGCTCT 58.339 50.000 0.00 0.00 0.00 4.09
2144 2184 2.651361 CGCCGCCACCTATCCTAG 59.349 66.667 0.00 0.00 0.00 3.02
2173 2213 2.328099 GGTGCTGAAGCGTCCAAGG 61.328 63.158 10.22 0.00 45.83 3.61
2174 2214 1.301716 GTGCTGAAGCGTCCAAGGA 60.302 57.895 0.00 0.00 45.83 3.36
2175 2215 1.301716 TGCTGAAGCGTCCAAGGAC 60.302 57.895 9.22 9.22 45.83 3.85
2176 2216 2.035442 GCTGAAGCGTCCAAGGACC 61.035 63.158 13.35 6.64 41.76 4.46
2177 2217 1.371183 CTGAAGCGTCCAAGGACCA 59.629 57.895 13.35 4.94 41.76 4.02
2178 2218 0.250295 CTGAAGCGTCCAAGGACCAA 60.250 55.000 13.35 0.00 41.76 3.67
2270 2337 2.172679 TGTCATCAGTGGCATGCAATT 58.827 42.857 21.36 0.88 34.41 2.32
2296 2363 1.449246 CAGGCCGAAGAGCTCAAGG 60.449 63.158 17.77 16.25 0.00 3.61
2349 2416 1.515304 GCTCTCTGAAGTCGTCGGC 60.515 63.158 0.00 0.00 31.99 5.54
2370 2437 3.499048 CAGCATGCAATCTGAAGTTCAC 58.501 45.455 21.98 0.00 32.26 3.18
2381 2448 0.667792 GAAGTTCACGCCGAAGAGCT 60.668 55.000 0.00 0.00 33.09 4.09
2432 2499 0.610174 TGCAAGAAGCTCTCCGATGT 59.390 50.000 0.00 0.00 45.94 3.06
2468 2535 1.048601 TCTGAAGTTCAGGCCGAAGT 58.951 50.000 28.33 10.24 44.39 3.01
2475 2542 0.884704 TTCAGGCCGAAGTGCTCAAC 60.885 55.000 0.00 0.00 0.00 3.18
2490 2557 2.236690 CTCAACAAATTCGAGCAAGCG 58.763 47.619 0.00 0.00 0.00 4.68
2512 2579 1.467734 GTGATCTGCACTGCAAGAAGG 59.532 52.381 4.99 0.00 44.27 3.46
2550 2617 4.201891 GGTAGCATGCAATCTGAAGTTCAG 60.202 45.833 24.37 24.37 45.59 3.02
2553 2620 2.574006 TGCAATCTGAAGTTCAGGCT 57.426 45.000 28.33 15.84 44.39 4.58
2559 2626 3.674528 TCTGAAGTTCAGGCTGAAGAG 57.325 47.619 29.22 20.60 44.39 2.85
2591 2658 1.804372 CGAGCAACCTAGTGATCTGCC 60.804 57.143 0.00 0.00 31.64 4.85
2621 2688 0.877649 CTCTCCGATGCCGTCAATGG 60.878 60.000 0.00 0.00 0.00 3.16
2665 2732 2.370281 AGCGCTCAAGAAATTCGAGA 57.630 45.000 2.64 0.00 0.00 4.04
2689 2759 2.004733 CGAGTGATCTGCATTGCAAGA 58.995 47.619 13.18 12.15 38.41 3.02
2690 2760 2.417586 CGAGTGATCTGCATTGCAAGAA 59.582 45.455 13.18 1.74 38.41 2.52
2691 2761 3.485381 CGAGTGATCTGCATTGCAAGAAG 60.485 47.826 13.18 2.31 38.41 2.85
2709 2779 3.055530 AGAAGCTCTCCAATGTCGTCAAT 60.056 43.478 0.00 0.00 0.00 2.57
2735 2805 1.018226 CAGTCTGAAGCTCAAGCCGG 61.018 60.000 0.00 0.00 43.38 6.13
2773 2843 0.179240 GCAAACGACTGATCTGCACG 60.179 55.000 14.54 14.54 33.19 5.34
2798 2868 1.207329 GAAGCTCCCCAATGTAGTCGT 59.793 52.381 0.00 0.00 0.00 4.34
2839 2909 1.154395 GCCGAAGCGCTCAAGAAAC 60.154 57.895 12.06 0.00 0.00 2.78
2840 2910 1.497722 CCGAAGCGCTCAAGAAACC 59.502 57.895 12.06 0.00 0.00 3.27
2860 2930 0.030235 CGACCACGCGATTGATCCTA 59.970 55.000 15.93 0.00 0.00 2.94
2871 2941 2.877097 TTGATCCTAAAGTGGCAGCA 57.123 45.000 0.00 0.00 0.00 4.41
2967 3037 0.179100 AAGATGACGACGGCATCCTG 60.179 55.000 34.40 0.00 42.36 3.86
3116 3186 4.869440 CTGCTCGCTCTGCTCCGG 62.869 72.222 0.00 0.00 0.00 5.14
3340 3410 3.932580 TTCACCAGGCGCTGCTACG 62.933 63.158 7.64 0.00 0.00 3.51
3515 3585 2.093235 CCAAGCTCTGGGAGAAGGTAAG 60.093 54.545 6.96 0.00 42.17 2.34
3518 3588 3.730269 AGCTCTGGGAGAAGGTAAGATT 58.270 45.455 0.00 0.00 0.00 2.40
3519 3589 4.107820 AGCTCTGGGAGAAGGTAAGATTT 58.892 43.478 0.00 0.00 0.00 2.17
3560 3630 4.142403 TGTCTTGTTTGAACTTGCTTCAGG 60.142 41.667 0.00 0.00 40.12 3.86
3642 3712 5.239525 ACTGGCAAGTACAAGATTGTTTCTC 59.760 40.000 3.14 0.00 42.35 2.87
3653 3723 0.603707 TTGTTTCTCGAGGGCAGCAG 60.604 55.000 13.56 0.00 0.00 4.24
3666 3736 1.681166 GGCAGCAGTGACATGGAGATT 60.681 52.381 0.00 0.00 0.00 2.40
3669 3739 2.676839 CAGCAGTGACATGGAGATTGAC 59.323 50.000 0.00 0.00 0.00 3.18
3682 3752 3.801594 GGAGATTGACGAGAAGAATCTGC 59.198 47.826 0.00 0.00 36.73 4.26
3700 3772 3.079578 CTGCCGATCAATTGCTATGGAT 58.920 45.455 0.00 0.00 0.00 3.41
3718 3790 3.129113 TGGATTGGTGAAGAATTGCATCG 59.871 43.478 0.00 0.00 0.00 3.84
3719 3791 3.378112 GGATTGGTGAAGAATTGCATCGA 59.622 43.478 0.00 0.00 0.00 3.59
3720 3792 4.037208 GGATTGGTGAAGAATTGCATCGAT 59.963 41.667 0.00 0.00 0.00 3.59
3721 3793 4.621068 TTGGTGAAGAATTGCATCGATC 57.379 40.909 0.00 0.00 0.00 3.69
3752 3824 4.929211 TGTCTAGGATTGTGTCATTGTTCG 59.071 41.667 0.00 0.00 0.00 3.95
3753 3825 4.929808 GTCTAGGATTGTGTCATTGTTCGT 59.070 41.667 0.00 0.00 0.00 3.85
3754 3826 5.408604 GTCTAGGATTGTGTCATTGTTCGTT 59.591 40.000 0.00 0.00 0.00 3.85
3755 3827 4.749245 AGGATTGTGTCATTGTTCGTTC 57.251 40.909 0.00 0.00 0.00 3.95
3765 3837 6.627671 GTGTCATTGTTCGTTCTAGTGTTTTC 59.372 38.462 0.00 0.00 0.00 2.29
3766 3838 5.839239 GTCATTGTTCGTTCTAGTGTTTTCG 59.161 40.000 0.00 0.00 0.00 3.46
3902 3977 9.666626 GTGTAGTATGTAGAAAGCATGTAGTAG 57.333 37.037 0.00 0.00 0.00 2.57
3949 4241 2.622942 TGATGTCAAGAAGTTGGGTTGC 59.377 45.455 0.00 0.00 34.09 4.17
3961 4253 1.742308 TGGGTTGCTCCTACCTCTTT 58.258 50.000 0.00 0.00 35.92 2.52
4075 4369 7.944729 AATAAGAGCATGTATTTTCCAGTGT 57.055 32.000 0.00 0.00 0.00 3.55
4138 4432 7.860872 GGAATTTATTCAGTAACCCAATTAGCG 59.139 37.037 4.97 0.00 38.53 4.26
4144 4438 5.362263 TCAGTAACCCAATTAGCGGATTAC 58.638 41.667 0.00 0.00 0.00 1.89
4194 4491 2.357075 AGTGCAGACAATGAGCATCTG 58.643 47.619 0.00 0.00 42.33 2.90
4195 4492 2.082231 GTGCAGACAATGAGCATCTGT 58.918 47.619 0.00 0.00 41.62 3.41
4299 4596 3.004734 CCAAGATGATTATGTTTCCCGGC 59.995 47.826 0.00 0.00 0.00 6.13
4313 4610 1.139256 TCCCGGCGCAGATAATTGTAA 59.861 47.619 10.83 0.00 0.00 2.41
4367 4664 7.051623 GGTAAAAAGAAACAAAACAAGGGGAT 58.948 34.615 0.00 0.00 0.00 3.85
4373 4670 4.551702 AACAAAACAAGGGGATAATGCC 57.448 40.909 0.00 0.00 0.00 4.40
4504 5262 9.413734 CCATATCTGTATGACTGTATCTATCCA 57.586 37.037 0.00 0.00 40.12 3.41
4511 5269 9.014297 TGTATGACTGTATCTATCCATGTAGTG 57.986 37.037 0.00 0.00 0.00 2.74
4523 5281 3.431725 GTAGTGGCGGCCAAGCAC 61.432 66.667 25.70 17.29 39.27 4.40
4539 5297 0.317020 GCACAACGTTGCCTTGTCTC 60.317 55.000 27.61 3.34 36.42 3.36
4552 5310 0.179067 TTGTCTCGTTCCTTTGCCGT 60.179 50.000 0.00 0.00 0.00 5.68
4553 5311 0.878523 TGTCTCGTTCCTTTGCCGTG 60.879 55.000 0.00 0.00 0.00 4.94
4554 5312 1.959226 TCTCGTTCCTTTGCCGTGC 60.959 57.895 0.00 0.00 0.00 5.34
4555 5313 2.966309 CTCGTTCCTTTGCCGTGCC 61.966 63.158 0.00 0.00 0.00 5.01
4556 5314 4.038080 CGTTCCTTTGCCGTGCCC 62.038 66.667 0.00 0.00 0.00 5.36
4557 5315 2.909965 GTTCCTTTGCCGTGCCCA 60.910 61.111 0.00 0.00 0.00 5.36
4558 5316 2.597217 TTCCTTTGCCGTGCCCAG 60.597 61.111 0.00 0.00 0.00 4.45
4561 5319 4.047059 CTTTGCCGTGCCCAGCTG 62.047 66.667 6.78 6.78 0.00 4.24
4562 5320 4.892965 TTTGCCGTGCCCAGCTGT 62.893 61.111 13.81 0.00 0.00 4.40
4566 5324 4.624364 CCGTGCCCAGCTGTGTCA 62.624 66.667 13.81 4.32 0.00 3.58
4567 5325 2.359107 CGTGCCCAGCTGTGTCAT 60.359 61.111 13.81 0.00 0.00 3.06
4568 5326 2.393768 CGTGCCCAGCTGTGTCATC 61.394 63.158 13.81 2.27 0.00 2.92
4569 5327 1.002868 GTGCCCAGCTGTGTCATCT 60.003 57.895 13.81 0.00 0.00 2.90
4570 5328 1.002990 TGCCCAGCTGTGTCATCTG 60.003 57.895 13.81 0.00 0.00 2.90
4571 5329 2.404995 GCCCAGCTGTGTCATCTGC 61.405 63.158 13.81 0.00 0.00 4.26
4572 5330 1.748122 CCCAGCTGTGTCATCTGCC 60.748 63.158 13.81 0.00 33.76 4.85
4573 5331 1.002990 CCAGCTGTGTCATCTGCCA 60.003 57.895 13.81 0.00 33.76 4.92
4574 5332 0.393944 CCAGCTGTGTCATCTGCCAT 60.394 55.000 13.81 0.00 33.76 4.40
4575 5333 1.015109 CAGCTGTGTCATCTGCCATC 58.985 55.000 5.25 0.00 33.76 3.51
4576 5334 0.461516 AGCTGTGTCATCTGCCATCG 60.462 55.000 0.00 0.00 33.76 3.84
4577 5335 1.434622 GCTGTGTCATCTGCCATCGG 61.435 60.000 0.00 0.00 0.00 4.18
4578 5336 0.812811 CTGTGTCATCTGCCATCGGG 60.813 60.000 0.00 0.00 37.18 5.14
4588 5346 2.190578 CCATCGGGCCCTCTCAAC 59.809 66.667 22.43 0.00 0.00 3.18
4589 5347 2.202932 CATCGGGCCCTCTCAACG 60.203 66.667 22.43 4.31 0.00 4.10
4590 5348 2.683933 ATCGGGCCCTCTCAACGT 60.684 61.111 22.43 0.00 0.00 3.99
4591 5349 3.019003 ATCGGGCCCTCTCAACGTG 62.019 63.158 22.43 0.00 0.00 4.49
4593 5351 4.329545 GGGCCCTCTCAACGTGCA 62.330 66.667 17.04 0.00 0.00 4.57
4594 5352 2.743928 GGCCCTCTCAACGTGCAG 60.744 66.667 0.00 0.00 0.00 4.41
4595 5353 3.426568 GCCCTCTCAACGTGCAGC 61.427 66.667 0.00 0.00 0.00 5.25
4596 5354 2.345244 CCCTCTCAACGTGCAGCT 59.655 61.111 0.00 0.00 0.00 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 90 7.255035 GGCATGATTGAAGATGAATATATCCGG 60.255 40.741 0.00 0.00 0.00 5.14
89 91 7.281549 TGGCATGATTGAAGATGAATATATCCG 59.718 37.037 0.00 0.00 0.00 4.18
90 92 8.515695 TGGCATGATTGAAGATGAATATATCC 57.484 34.615 0.00 0.00 0.00 2.59
172 174 1.475280 TCGGTGCTTATACTTGTCGCT 59.525 47.619 0.00 0.00 0.00 4.93
385 401 7.147915 GGAACCTGGATGCAGATAAACAAATAA 60.148 37.037 16.85 0.00 0.00 1.40
387 403 5.127682 GGAACCTGGATGCAGATAAACAAAT 59.872 40.000 16.85 0.00 0.00 2.32
457 473 4.377943 GCATTGCACGTACACATTGACTAA 60.378 41.667 3.15 0.00 0.00 2.24
497 513 7.386851 ACTTAATATCCGCATGCACTTAGTAT 58.613 34.615 19.57 4.09 0.00 2.12
500 516 6.311445 CCTACTTAATATCCGCATGCACTTAG 59.689 42.308 19.57 0.00 0.00 2.18
545 561 9.027202 TCATGCCAAATATAATGCTAATCACAT 57.973 29.630 0.00 0.00 0.00 3.21
546 562 8.298854 GTCATGCCAAATATAATGCTAATCACA 58.701 33.333 0.00 0.00 0.00 3.58
547 563 7.482743 CGTCATGCCAAATATAATGCTAATCAC 59.517 37.037 0.00 0.00 0.00 3.06
548 564 7.529158 CGTCATGCCAAATATAATGCTAATCA 58.471 34.615 0.00 0.00 0.00 2.57
549 565 6.470235 GCGTCATGCCAAATATAATGCTAATC 59.530 38.462 0.00 0.00 37.76 1.75
550 566 6.072008 TGCGTCATGCCAAATATAATGCTAAT 60.072 34.615 0.00 0.00 45.60 1.73
551 567 5.240403 TGCGTCATGCCAAATATAATGCTAA 59.760 36.000 0.00 0.00 45.60 3.09
552 568 4.759183 TGCGTCATGCCAAATATAATGCTA 59.241 37.500 0.00 0.00 45.60 3.49
553 569 3.569277 TGCGTCATGCCAAATATAATGCT 59.431 39.130 0.00 0.00 45.60 3.79
554 570 3.670055 GTGCGTCATGCCAAATATAATGC 59.330 43.478 0.00 0.00 45.60 3.56
555 571 4.676471 GTGTGCGTCATGCCAAATATAATG 59.324 41.667 0.00 0.00 45.60 1.90
556 572 4.580167 AGTGTGCGTCATGCCAAATATAAT 59.420 37.500 0.00 0.00 45.60 1.28
557 573 3.944650 AGTGTGCGTCATGCCAAATATAA 59.055 39.130 0.00 0.00 45.60 0.98
558 574 3.540617 AGTGTGCGTCATGCCAAATATA 58.459 40.909 0.00 0.00 45.60 0.86
559 575 2.368439 AGTGTGCGTCATGCCAAATAT 58.632 42.857 0.00 0.00 45.60 1.28
560 576 1.819928 AGTGTGCGTCATGCCAAATA 58.180 45.000 0.00 0.00 45.60 1.40
561 577 1.819928 TAGTGTGCGTCATGCCAAAT 58.180 45.000 0.00 0.00 45.60 2.32
562 578 1.598882 TTAGTGTGCGTCATGCCAAA 58.401 45.000 0.00 0.00 45.60 3.28
563 579 1.265635 GTTTAGTGTGCGTCATGCCAA 59.734 47.619 0.00 0.00 45.60 4.52
564 580 0.871722 GTTTAGTGTGCGTCATGCCA 59.128 50.000 0.00 0.00 45.60 4.92
565 581 0.179225 CGTTTAGTGTGCGTCATGCC 60.179 55.000 0.00 0.00 45.60 4.40
566 582 0.511221 ACGTTTAGTGTGCGTCATGC 59.489 50.000 0.00 0.00 46.70 4.06
567 583 2.211449 CACGTTTAGTGTGCGTCATG 57.789 50.000 0.00 0.00 45.51 3.07
577 593 1.137513 GAGCGCTCAACACGTTTAGT 58.862 50.000 31.91 0.00 0.00 2.24
578 594 0.091344 CGAGCGCTCAACACGTTTAG 59.909 55.000 34.69 12.34 0.00 1.85
579 595 0.318022 TCGAGCGCTCAACACGTTTA 60.318 50.000 34.69 4.78 0.00 2.01
580 596 1.590525 TCGAGCGCTCAACACGTTT 60.591 52.632 34.69 0.00 0.00 3.60
581 597 2.027024 TCGAGCGCTCAACACGTT 59.973 55.556 34.69 0.00 0.00 3.99
582 598 2.729862 GTCGAGCGCTCAACACGT 60.730 61.111 34.69 0.00 0.00 4.49
583 599 0.796870 TATGTCGAGCGCTCAACACG 60.797 55.000 31.93 20.44 0.00 4.49
584 600 1.346365 TTATGTCGAGCGCTCAACAC 58.654 50.000 31.93 24.81 0.00 3.32
585 601 2.073117 TTTATGTCGAGCGCTCAACA 57.927 45.000 31.47 31.47 0.00 3.33
586 602 2.784665 GCTTTTATGTCGAGCGCTCAAC 60.785 50.000 34.69 28.50 0.00 3.18
587 603 1.393539 GCTTTTATGTCGAGCGCTCAA 59.606 47.619 34.69 17.41 0.00 3.02
588 604 0.999406 GCTTTTATGTCGAGCGCTCA 59.001 50.000 34.69 18.66 0.00 4.26
589 605 0.999406 TGCTTTTATGTCGAGCGCTC 59.001 50.000 27.64 27.64 39.23 5.03
590 606 1.002366 CTGCTTTTATGTCGAGCGCT 58.998 50.000 11.27 11.27 39.23 5.92
591 607 0.721718 ACTGCTTTTATGTCGAGCGC 59.278 50.000 0.00 0.00 39.23 5.92
592 608 2.263077 AGACTGCTTTTATGTCGAGCG 58.737 47.619 0.00 0.00 39.23 5.03
593 609 6.032985 CGATATAGACTGCTTTTATGTCGAGC 59.967 42.308 8.70 0.00 39.33 5.03
594 610 7.078851 ACGATATAGACTGCTTTTATGTCGAG 58.921 38.462 16.31 0.00 39.33 4.04
595 611 6.967135 ACGATATAGACTGCTTTTATGTCGA 58.033 36.000 16.31 0.00 39.33 4.20
596 612 7.358435 CCAACGATATAGACTGCTTTTATGTCG 60.358 40.741 11.21 11.21 41.30 4.35
597 613 7.652105 TCCAACGATATAGACTGCTTTTATGTC 59.348 37.037 0.00 0.00 0.00 3.06
598 614 7.497595 TCCAACGATATAGACTGCTTTTATGT 58.502 34.615 0.00 0.00 0.00 2.29
599 615 7.946655 TCCAACGATATAGACTGCTTTTATG 57.053 36.000 0.00 0.00 0.00 1.90
600 616 8.993121 CAATCCAACGATATAGACTGCTTTTAT 58.007 33.333 0.00 0.00 0.00 1.40
601 617 8.201464 TCAATCCAACGATATAGACTGCTTTTA 58.799 33.333 0.00 0.00 0.00 1.52
602 618 7.011482 GTCAATCCAACGATATAGACTGCTTTT 59.989 37.037 0.00 0.00 0.00 2.27
603 619 6.480320 GTCAATCCAACGATATAGACTGCTTT 59.520 38.462 0.00 0.00 0.00 3.51
604 620 5.986135 GTCAATCCAACGATATAGACTGCTT 59.014 40.000 0.00 0.00 0.00 3.91
605 621 5.069119 TGTCAATCCAACGATATAGACTGCT 59.931 40.000 0.00 0.00 31.37 4.24
606 622 5.289595 TGTCAATCCAACGATATAGACTGC 58.710 41.667 0.00 0.00 31.37 4.40
607 623 7.147976 TCATGTCAATCCAACGATATAGACTG 58.852 38.462 0.00 0.00 31.37 3.51
608 624 7.290110 TCATGTCAATCCAACGATATAGACT 57.710 36.000 0.00 0.00 31.37 3.24
609 625 8.539770 AATCATGTCAATCCAACGATATAGAC 57.460 34.615 0.00 0.00 0.00 2.59
610 626 8.992073 CAAATCATGTCAATCCAACGATATAGA 58.008 33.333 0.00 0.00 0.00 1.98
611 627 8.992073 TCAAATCATGTCAATCCAACGATATAG 58.008 33.333 0.00 0.00 0.00 1.31
612 628 8.900983 TCAAATCATGTCAATCCAACGATATA 57.099 30.769 0.00 0.00 0.00 0.86
613 629 7.806409 TCAAATCATGTCAATCCAACGATAT 57.194 32.000 0.00 0.00 0.00 1.63
614 630 7.282901 ACATCAAATCATGTCAATCCAACGATA 59.717 33.333 0.00 0.00 30.76 2.92
615 631 6.095860 ACATCAAATCATGTCAATCCAACGAT 59.904 34.615 0.00 0.00 30.76 3.73
616 632 5.415389 ACATCAAATCATGTCAATCCAACGA 59.585 36.000 0.00 0.00 30.76 3.85
617 633 5.643664 ACATCAAATCATGTCAATCCAACG 58.356 37.500 0.00 0.00 30.76 4.10
627 643 8.347771 CAATTAATCTCGGACATCAAATCATGT 58.652 33.333 0.00 0.00 39.84 3.21
628 644 7.806487 CCAATTAATCTCGGACATCAAATCATG 59.194 37.037 0.00 0.00 0.00 3.07
629 645 7.720957 TCCAATTAATCTCGGACATCAAATCAT 59.279 33.333 0.00 0.00 0.00 2.45
630 646 7.053498 TCCAATTAATCTCGGACATCAAATCA 58.947 34.615 0.00 0.00 0.00 2.57
631 647 7.496529 TCCAATTAATCTCGGACATCAAATC 57.503 36.000 0.00 0.00 0.00 2.17
632 648 7.941238 AGATCCAATTAATCTCGGACATCAAAT 59.059 33.333 3.94 0.00 0.00 2.32
633 649 7.227314 CAGATCCAATTAATCTCGGACATCAAA 59.773 37.037 3.94 0.00 31.05 2.69
634 650 6.707608 CAGATCCAATTAATCTCGGACATCAA 59.292 38.462 3.94 0.00 31.05 2.57
635 651 6.226052 CAGATCCAATTAATCTCGGACATCA 58.774 40.000 3.94 0.00 31.05 3.07
636 652 5.121454 GCAGATCCAATTAATCTCGGACATC 59.879 44.000 3.94 0.75 31.05 3.06
637 653 4.999950 GCAGATCCAATTAATCTCGGACAT 59.000 41.667 3.94 0.00 31.05 3.06
638 654 4.380531 GCAGATCCAATTAATCTCGGACA 58.619 43.478 3.94 0.00 31.05 4.02
639 655 3.748568 GGCAGATCCAATTAATCTCGGAC 59.251 47.826 3.94 0.68 31.05 4.79
640 656 3.648067 AGGCAGATCCAATTAATCTCGGA 59.352 43.478 4.26 4.26 37.29 4.55
641 657 3.999663 GAGGCAGATCCAATTAATCTCGG 59.000 47.826 0.62 0.00 37.29 4.63
642 658 4.892433 AGAGGCAGATCCAATTAATCTCG 58.108 43.478 0.62 0.00 37.29 4.04
643 659 6.016443 CCAAAGAGGCAGATCCAATTAATCTC 60.016 42.308 0.62 0.00 37.29 2.75
644 660 5.832060 CCAAAGAGGCAGATCCAATTAATCT 59.168 40.000 0.00 0.00 37.29 2.40
645 661 5.010415 CCCAAAGAGGCAGATCCAATTAATC 59.990 44.000 0.00 0.00 37.29 1.75
646 662 4.897670 CCCAAAGAGGCAGATCCAATTAAT 59.102 41.667 0.00 0.00 37.29 1.40
647 663 4.264352 ACCCAAAGAGGCAGATCCAATTAA 60.264 41.667 0.00 0.00 37.29 1.40
648 664 3.269381 ACCCAAAGAGGCAGATCCAATTA 59.731 43.478 0.00 0.00 37.29 1.40
649 665 2.043526 ACCCAAAGAGGCAGATCCAATT 59.956 45.455 0.00 0.00 37.29 2.32
650 666 1.642762 ACCCAAAGAGGCAGATCCAAT 59.357 47.619 0.00 0.00 37.29 3.16
651 667 1.004745 GACCCAAAGAGGCAGATCCAA 59.995 52.381 0.00 0.00 37.29 3.53
652 668 0.620556 GACCCAAAGAGGCAGATCCA 59.379 55.000 0.00 0.00 37.29 3.41
653 669 0.915364 AGACCCAAAGAGGCAGATCC 59.085 55.000 0.00 0.00 35.39 3.36
654 670 2.797177 AAGACCCAAAGAGGCAGATC 57.203 50.000 0.00 0.00 35.39 2.75
655 671 3.532641 AAAAGACCCAAAGAGGCAGAT 57.467 42.857 0.00 0.00 35.39 2.90
656 672 3.312736 AAAAAGACCCAAAGAGGCAGA 57.687 42.857 0.00 0.00 35.39 4.26
657 673 7.122650 TCAATATAAAAAGACCCAAAGAGGCAG 59.877 37.037 0.00 0.00 35.39 4.85
658 674 6.951198 TCAATATAAAAAGACCCAAAGAGGCA 59.049 34.615 0.00 0.00 35.39 4.75
659 675 7.404671 TCAATATAAAAAGACCCAAAGAGGC 57.595 36.000 0.00 0.00 35.39 4.70
694 710 9.793259 AGTTTTGGTGTCTCAAGAAAATATCTA 57.207 29.630 0.00 0.00 37.42 1.98
695 711 8.697507 AGTTTTGGTGTCTCAAGAAAATATCT 57.302 30.769 0.00 0.00 41.32 1.98
697 713 8.515414 GCTAGTTTTGGTGTCTCAAGAAAATAT 58.485 33.333 0.00 0.00 0.00 1.28
698 714 7.719633 AGCTAGTTTTGGTGTCTCAAGAAAATA 59.280 33.333 0.00 0.00 0.00 1.40
699 715 6.547510 AGCTAGTTTTGGTGTCTCAAGAAAAT 59.452 34.615 0.00 0.00 0.00 1.82
700 716 5.885912 AGCTAGTTTTGGTGTCTCAAGAAAA 59.114 36.000 0.00 0.00 0.00 2.29
701 717 5.437060 AGCTAGTTTTGGTGTCTCAAGAAA 58.563 37.500 0.00 0.00 0.00 2.52
702 718 5.036117 AGCTAGTTTTGGTGTCTCAAGAA 57.964 39.130 0.00 0.00 0.00 2.52
703 719 4.689612 AGCTAGTTTTGGTGTCTCAAGA 57.310 40.909 0.00 0.00 0.00 3.02
704 720 4.816385 TCAAGCTAGTTTTGGTGTCTCAAG 59.184 41.667 8.60 0.00 0.00 3.02
705 721 4.776349 TCAAGCTAGTTTTGGTGTCTCAA 58.224 39.130 8.60 0.00 0.00 3.02
706 722 4.415881 TCAAGCTAGTTTTGGTGTCTCA 57.584 40.909 8.60 0.00 0.00 3.27
760 776 0.685458 GGGCTGGATGTGAATTGGCT 60.685 55.000 0.00 0.00 0.00 4.75
765 781 0.107508 CTCGTGGGCTGGATGTGAAT 60.108 55.000 0.00 0.00 0.00 2.57
774 790 2.743928 GCTTGGTCTCGTGGGCTG 60.744 66.667 0.00 0.00 0.00 4.85
794 811 3.270877 CTGGGAGTTATCGTTTTGGGAG 58.729 50.000 0.00 0.00 0.00 4.30
806 824 2.686106 GGGTCGGGCTGGGAGTTA 60.686 66.667 0.00 0.00 0.00 2.24
857 882 7.908082 CGAATTGGTTTTTCCTTTTTCCTTTTC 59.092 33.333 0.00 0.00 37.07 2.29
862 887 4.318475 CGCGAATTGGTTTTTCCTTTTTCC 60.318 41.667 0.00 0.00 37.07 3.13
907 934 1.124780 TCATTCGGGGGCGATTTAGA 58.875 50.000 0.00 0.00 0.00 2.10
921 948 1.153353 TTCTTGGTTCGCCGTCATTC 58.847 50.000 0.00 0.00 41.18 2.67
922 949 1.821216 ATTCTTGGTTCGCCGTCATT 58.179 45.000 0.00 0.00 41.18 2.57
924 951 1.533731 GAAATTCTTGGTTCGCCGTCA 59.466 47.619 0.00 0.00 41.18 4.35
925 952 1.135774 GGAAATTCTTGGTTCGCCGTC 60.136 52.381 0.00 0.00 41.18 4.79
926 953 0.879090 GGAAATTCTTGGTTCGCCGT 59.121 50.000 0.00 0.00 41.18 5.68
927 954 0.179200 CGGAAATTCTTGGTTCGCCG 60.179 55.000 0.00 0.00 41.18 6.46
928 955 0.456142 GCGGAAATTCTTGGTTCGCC 60.456 55.000 0.00 0.00 37.92 5.54
929 956 0.793104 CGCGGAAATTCTTGGTTCGC 60.793 55.000 0.00 0.00 0.00 4.70
930 957 0.793104 GCGCGGAAATTCTTGGTTCG 60.793 55.000 8.83 0.00 0.00 3.95
931 958 0.793104 CGCGCGGAAATTCTTGGTTC 60.793 55.000 24.84 0.00 0.00 3.62
937 964 2.736682 CGGTTCGCGCGGAAATTCT 61.737 57.895 31.69 0.00 36.14 2.40
938 965 2.276430 CGGTTCGCGCGGAAATTC 60.276 61.111 31.69 9.23 36.14 2.17
989 1016 1.815817 GAACGCCATGGCTTTTGGGT 61.816 55.000 33.07 19.90 39.32 4.51
992 1019 1.079888 GGGAACGCCATGGCTTTTG 60.080 57.895 33.07 20.33 39.32 2.44
1002 1039 1.654023 CGGAAATGGAAGGGAACGCC 61.654 60.000 0.00 0.00 0.00 5.68
1020 1058 0.460987 AGGAAGAGAGCCGAAATGCG 60.461 55.000 0.00 0.00 40.47 4.73
1024 1062 0.544357 TGGGAGGAAGAGAGCCGAAA 60.544 55.000 0.00 0.00 0.00 3.46
1025 1063 1.078528 TGGGAGGAAGAGAGCCGAA 59.921 57.895 0.00 0.00 0.00 4.30
1026 1064 1.682684 GTGGGAGGAAGAGAGCCGA 60.683 63.158 0.00 0.00 0.00 5.54
1027 1065 2.726351 GGTGGGAGGAAGAGAGCCG 61.726 68.421 0.00 0.00 0.00 5.52
1028 1066 2.726351 CGGTGGGAGGAAGAGAGCC 61.726 68.421 0.00 0.00 0.00 4.70
1029 1067 2.896443 CGGTGGGAGGAAGAGAGC 59.104 66.667 0.00 0.00 0.00 4.09
1030 1068 2.726351 GGCGGTGGGAGGAAGAGAG 61.726 68.421 0.00 0.00 0.00 3.20
1031 1069 2.683933 GGCGGTGGGAGGAAGAGA 60.684 66.667 0.00 0.00 0.00 3.10
1032 1070 4.148825 CGGCGGTGGGAGGAAGAG 62.149 72.222 0.00 0.00 0.00 2.85
1049 1087 1.208293 AGACGAATTTGAGGAGGAGGC 59.792 52.381 0.00 0.00 0.00 4.70
1050 1088 2.763448 AGAGACGAATTTGAGGAGGAGG 59.237 50.000 0.00 0.00 0.00 4.30
1051 1089 3.181480 GGAGAGACGAATTTGAGGAGGAG 60.181 52.174 0.00 0.00 0.00 3.69
1052 1090 2.761208 GGAGAGACGAATTTGAGGAGGA 59.239 50.000 0.00 0.00 0.00 3.71
1068 1106 2.233654 CGCGCGAGGAATTGGAGAG 61.234 63.158 28.94 0.00 0.00 3.20
1091 1129 2.213499 CTTTCGGGATTGGAATCGAGG 58.787 52.381 0.00 0.00 36.27 4.63
1108 1146 3.351450 GCGGAGGCGGAAAACTTT 58.649 55.556 0.00 0.00 0.00 2.66
1158 1196 4.776647 GTGCGCGGGGTGATTTGC 62.777 66.667 8.83 0.00 0.00 3.68
1174 1212 0.460284 CTATGAAACAGGCTCGCGGT 60.460 55.000 6.13 0.00 0.00 5.68
1190 1228 2.015456 TGGATCGGTGATCTGGCTAT 57.985 50.000 6.74 0.00 38.91 2.97
1197 1235 1.795286 GCGAGATTTGGATCGGTGATC 59.205 52.381 0.00 0.00 39.31 2.92
1287 1327 0.856641 CGAACTTGAACCGCTTCGAA 59.143 50.000 0.00 0.00 38.18 3.71
1288 1328 0.249155 ACGAACTTGAACCGCTTCGA 60.249 50.000 7.36 0.00 39.03 3.71
1289 1329 0.161024 GACGAACTTGAACCGCTTCG 59.839 55.000 0.00 0.00 41.01 3.79
1452 1492 3.883744 CTTGGCCGGAAGACACGCT 62.884 63.158 5.05 0.00 0.00 5.07
1550 1590 1.006102 ACGTGCTTCTTCACCGGAG 60.006 57.895 9.46 0.00 33.57 4.63
1726 1766 4.899239 GGATGGAGTGGCGGCGAG 62.899 72.222 12.98 0.00 0.00 5.03
2047 2087 2.681848 CTGACTTCAATGGTGGAGATGC 59.318 50.000 0.00 0.00 33.49 3.91
2056 2096 1.064166 AGCCCCATCTGACTTCAATGG 60.064 52.381 10.90 10.90 39.76 3.16
2058 2098 2.172293 GAGAGCCCCATCTGACTTCAAT 59.828 50.000 0.00 0.00 0.00 2.57
2059 2099 1.556911 GAGAGCCCCATCTGACTTCAA 59.443 52.381 0.00 0.00 0.00 2.69
2144 2184 0.539438 TTCAGCACCATTCACCACCC 60.539 55.000 0.00 0.00 0.00 4.61
2150 2190 0.955428 GGACGCTTCAGCACCATTCA 60.955 55.000 0.00 0.00 42.21 2.57
2173 2213 2.820197 GGGATTTCTGGAACACTTGGTC 59.180 50.000 0.00 0.00 0.00 4.02
2174 2214 2.814097 CGGGATTTCTGGAACACTTGGT 60.814 50.000 0.00 0.00 0.00 3.67
2175 2215 1.812571 CGGGATTTCTGGAACACTTGG 59.187 52.381 0.00 0.00 0.00 3.61
2176 2216 1.200020 GCGGGATTTCTGGAACACTTG 59.800 52.381 0.00 0.00 0.00 3.16
2177 2217 1.202879 TGCGGGATTTCTGGAACACTT 60.203 47.619 0.00 0.00 0.00 3.16
2178 2218 0.400213 TGCGGGATTTCTGGAACACT 59.600 50.000 0.00 0.00 0.00 3.55
2270 2337 1.878102 GCTCTTCGGCCTGAACTTCAA 60.878 52.381 0.00 0.00 31.87 2.69
2296 2363 0.458543 TCACTCGCTGGCTCGAATTC 60.459 55.000 0.00 0.00 38.08 2.17
2349 2416 3.499048 GTGAACTTCAGATTGCATGCTG 58.501 45.455 20.33 8.87 0.00 4.41
2370 2437 1.363744 ATTTCTTGAGCTCTTCGGCG 58.636 50.000 16.19 0.00 37.29 6.46
2381 2448 5.989168 TCACTAGTTTGCTCGAATTTCTTGA 59.011 36.000 0.00 0.00 0.00 3.02
2432 2499 0.246360 AGATTGTGTGCCATCGACGA 59.754 50.000 0.00 0.00 0.00 4.20
2437 2504 3.503363 TGAACTTCAGATTGTGTGCCATC 59.497 43.478 0.00 0.00 0.00 3.51
2475 2542 1.460743 TCACTCGCTTGCTCGAATTTG 59.539 47.619 0.00 0.00 38.08 2.32
2505 2572 3.506810 GACGACATCAGAGACCTTCTTG 58.493 50.000 0.00 0.00 32.41 3.02
2512 2579 1.268133 GCTACCGACGACATCAGAGAC 60.268 57.143 0.00 0.00 0.00 3.36
2578 2645 0.543277 TTGCAGGGCAGATCACTAGG 59.457 55.000 0.00 0.00 40.61 3.02
2591 2658 0.177604 ATCGGAGAGCTTCTTGCAGG 59.822 55.000 0.00 0.00 43.63 4.85
2621 2688 3.303406 GCTTGAACTTCAGATTGTGTGC 58.697 45.455 0.00 0.00 0.00 4.57
2628 2695 2.079925 GCTTCGGCTTGAACTTCAGAT 58.920 47.619 0.00 0.00 38.08 2.90
2665 2732 2.553602 TGCAATGCAGATCACTCGTTTT 59.446 40.909 2.72 0.00 33.32 2.43
2689 2759 2.839486 TTGACGACATTGGAGAGCTT 57.161 45.000 0.00 0.00 0.00 3.74
2690 2760 2.625737 CATTGACGACATTGGAGAGCT 58.374 47.619 0.00 0.00 0.00 4.09
2691 2761 1.667724 CCATTGACGACATTGGAGAGC 59.332 52.381 19.60 0.00 45.14 4.09
2709 2779 0.319900 GAGCTTCAGACTGTTCGCCA 60.320 55.000 1.59 0.00 0.00 5.69
2773 2843 0.613012 ACATTGGGGAGCTTCTTGCC 60.613 55.000 0.00 0.00 44.23 4.52
2840 2910 2.237751 GGATCAATCGCGTGGTCGG 61.238 63.158 5.77 0.00 37.56 4.79
2860 2930 4.892965 TGCCGGTGCTGCCACTTT 62.893 61.111 1.90 0.00 41.75 2.66
2952 3022 2.261361 CACAGGATGCCGTCGTCA 59.739 61.111 0.00 0.00 42.53 4.35
3137 3207 2.440599 GCTTGCCCTTCTTCCCCA 59.559 61.111 0.00 0.00 0.00 4.96
3518 3588 9.868277 ACAAGACAATGACAAGAAAATTACAAA 57.132 25.926 0.00 0.00 0.00 2.83
3519 3589 9.868277 AACAAGACAATGACAAGAAAATTACAA 57.132 25.926 0.00 0.00 0.00 2.41
3642 3712 2.104859 CATGTCACTGCTGCCCTCG 61.105 63.158 0.00 0.00 0.00 4.63
3653 3723 3.510388 TCTCGTCAATCTCCATGTCAC 57.490 47.619 0.00 0.00 0.00 3.67
3666 3736 1.173913 TCGGCAGATTCTTCTCGTCA 58.826 50.000 0.00 0.00 0.00 4.35
3669 3739 2.498807 TGATCGGCAGATTCTTCTCG 57.501 50.000 0.00 0.00 37.19 4.04
3682 3752 3.822735 ACCAATCCATAGCAATTGATCGG 59.177 43.478 10.34 7.70 35.35 4.18
3700 3772 4.264253 AGATCGATGCAATTCTTCACCAA 58.736 39.130 0.54 0.00 0.00 3.67
3718 3790 9.202273 GACACAATCCTAGACAATTATGAGATC 57.798 37.037 0.00 0.00 0.00 2.75
3719 3791 8.708378 TGACACAATCCTAGACAATTATGAGAT 58.292 33.333 0.00 0.00 0.00 2.75
3720 3792 8.078060 TGACACAATCCTAGACAATTATGAGA 57.922 34.615 0.00 0.00 0.00 3.27
3721 3793 8.899427 ATGACACAATCCTAGACAATTATGAG 57.101 34.615 0.00 0.00 0.00 2.90
3752 3824 6.600246 AGGAGAAAACGAAAACACTAGAAC 57.400 37.500 0.00 0.00 0.00 3.01
3753 3825 7.619964 AAAGGAGAAAACGAAAACACTAGAA 57.380 32.000 0.00 0.00 0.00 2.10
3754 3826 7.414762 CCAAAAGGAGAAAACGAAAACACTAGA 60.415 37.037 0.00 0.00 0.00 2.43
3755 3827 6.691388 CCAAAAGGAGAAAACGAAAACACTAG 59.309 38.462 0.00 0.00 0.00 2.57
3765 3837 2.459934 GCACACCAAAAGGAGAAAACG 58.540 47.619 0.00 0.00 0.00 3.60
3766 3838 2.430694 AGGCACACCAAAAGGAGAAAAC 59.569 45.455 0.00 0.00 39.06 2.43
3819 3891 3.260632 ACAGTACATGCCATGACACACTA 59.739 43.478 12.53 0.00 0.00 2.74
3883 3955 7.068839 ACAGCTACTACTACATGCTTTCTACAT 59.931 37.037 0.00 0.00 0.00 2.29
3949 4241 5.511363 TCCAAGTCTCTAAAGAGGTAGGAG 58.489 45.833 7.14 0.00 42.30 3.69
4072 4364 2.653766 CGCAACAACGGCCAACAC 60.654 61.111 2.24 0.00 0.00 3.32
4075 4369 3.959975 GCTCGCAACAACGGCCAA 61.960 61.111 2.24 0.00 0.00 4.52
4138 4432 4.527564 GTGATTGCACGCTATTGTAATCC 58.472 43.478 13.96 6.10 43.92 3.01
4144 4438 1.331756 GGAGGTGATTGCACGCTATTG 59.668 52.381 0.00 0.00 46.09 1.90
4194 4491 4.248859 TCTTTAGTCAGATCAAGCAGCAC 58.751 43.478 0.00 0.00 0.00 4.40
4195 4492 4.541973 TCTTTAGTCAGATCAAGCAGCA 57.458 40.909 0.00 0.00 0.00 4.41
4287 4584 0.753867 TATCTGCGCCGGGAAACATA 59.246 50.000 4.18 0.00 0.00 2.29
4290 4587 1.021968 AATTATCTGCGCCGGGAAAC 58.978 50.000 4.18 0.00 0.00 2.78
4299 4596 8.728088 AACTTGTTTCTTTACAATTATCTGCG 57.272 30.769 0.00 0.00 37.39 5.18
4367 4664 4.876125 TCAACATTTTGAAAGCGGCATTA 58.124 34.783 1.45 0.00 38.87 1.90
4430 4727 2.262915 GAGCACCTGACCGACTGG 59.737 66.667 0.00 0.00 42.26 4.00
4504 5262 2.438434 GCTTGGCCGCCACTACAT 60.438 61.111 13.00 0.00 30.78 2.29
4506 5264 3.431725 GTGCTTGGCCGCCACTAC 61.432 66.667 13.00 7.84 30.78 2.73
4523 5281 0.655733 AACGAGACAAGGCAACGTTG 59.344 50.000 23.90 23.90 43.60 4.10
4539 5297 4.038080 GGGCACGGCAAAGGAACG 62.038 66.667 0.00 0.00 0.00 3.95
4552 5310 1.002990 CAGATGACACAGCTGGGCA 60.003 57.895 18.07 15.72 43.16 5.36
4553 5311 2.404995 GCAGATGACACAGCTGGGC 61.405 63.158 18.07 9.81 46.38 5.36
4554 5312 1.748122 GGCAGATGACACAGCTGGG 60.748 63.158 16.28 16.28 46.38 4.45
4555 5313 0.393944 ATGGCAGATGACACAGCTGG 60.394 55.000 19.93 9.66 46.38 4.85
4557 5315 0.461516 CGATGGCAGATGACACAGCT 60.462 55.000 0.00 0.00 34.80 4.24
4558 5316 1.434622 CCGATGGCAGATGACACAGC 61.435 60.000 0.00 0.00 34.80 4.40
4559 5317 0.812811 CCCGATGGCAGATGACACAG 60.813 60.000 0.00 0.00 34.80 3.66
4560 5318 1.221566 CCCGATGGCAGATGACACA 59.778 57.895 0.00 0.00 34.80 3.72
4561 5319 4.131376 CCCGATGGCAGATGACAC 57.869 61.111 0.00 0.00 34.80 3.67
4571 5329 2.190578 GTTGAGAGGGCCCGATGG 59.809 66.667 18.44 0.00 0.00 3.51
4572 5330 2.202932 CGTTGAGAGGGCCCGATG 60.203 66.667 18.44 3.03 0.00 3.84
4573 5331 2.683933 ACGTTGAGAGGGCCCGAT 60.684 61.111 18.44 9.24 0.00 4.18
4574 5332 3.691342 CACGTTGAGAGGGCCCGA 61.691 66.667 18.44 0.00 0.00 5.14
4576 5334 4.329545 TGCACGTTGAGAGGGCCC 62.330 66.667 16.46 16.46 0.00 5.80
4577 5335 2.743928 CTGCACGTTGAGAGGGCC 60.744 66.667 0.00 0.00 0.00 5.80
4578 5336 3.426568 GCTGCACGTTGAGAGGGC 61.427 66.667 0.00 0.00 0.00 5.19
4579 5337 1.302033 AAGCTGCACGTTGAGAGGG 60.302 57.895 1.02 0.00 0.00 4.30
4580 5338 1.572085 CCAAGCTGCACGTTGAGAGG 61.572 60.000 1.02 0.00 0.00 3.69
4581 5339 0.601046 TCCAAGCTGCACGTTGAGAG 60.601 55.000 1.02 0.00 0.00 3.20
4582 5340 0.601046 CTCCAAGCTGCACGTTGAGA 60.601 55.000 1.02 0.00 0.00 3.27
4583 5341 1.572085 CCTCCAAGCTGCACGTTGAG 61.572 60.000 1.02 0.29 0.00 3.02
4584 5342 1.597854 CCTCCAAGCTGCACGTTGA 60.598 57.895 1.02 0.00 0.00 3.18
4585 5343 2.620112 CCCTCCAAGCTGCACGTTG 61.620 63.158 1.02 0.00 0.00 4.10
4586 5344 2.281761 CCCTCCAAGCTGCACGTT 60.282 61.111 1.02 0.00 0.00 3.99
4589 5347 4.666253 TGGCCCTCCAAGCTGCAC 62.666 66.667 0.00 0.00 39.99 4.57
4590 5348 3.900862 TTGGCCCTCCAAGCTGCA 61.901 61.111 0.00 0.00 46.89 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.