>input_sequence_29639
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----------------------------------------------------------------------------ATGG
CGTTCCCT-TCCATTTCCGCATTTCGGCTCTCTTCCTCCCACCGCCGCCTCCTCCTCAAATTCGTCTCTCCAATTCCTCG
CGCGCTCGCCTCGATTCCAATCCCGAAAGTTTTCCGCCTCCGCCGGGATCATTTAAGCCCTTCTTCCCTCCTCGGGCAAA
TCACCCCGCGCACCGCGAGCCTGTTTCATAGCCAGATCACCGATCCA--AATCTCGCCGCCCCGCCCATGGAGATCGCCA
GGGACGCCGCCGCGAGCGGTGGCCGCAGCATCCGCGACCTGCCGCCTTCGAAGCGGTTCAAGTTCGTCGGCTCCAACCTC
GGGCCGATGCCGTGCCCGCCGCTGCCGGCGAAGAAGCGCGCGCTCCCGCCGCTGCCGGAGGCGGCGCCTGCCGCTGCCTG
CCTTCCGGCGAAGAAGCGCGCGTATGCGCTGCCGCTGGATGCCGTCTCGCCAGCGTGTCTTCCGGCCAAGAAGCGCGTCC
ACGTGCGCCCCCCTCCGCCGGAGGATAGCGCTCCTCCTCCCTCCGTCCCGTCCAAGAAGCCTCCCCTCGCTCCGGTGAAG
AAGCACGTCGGGGTGCCGCCGCTCCCGGAGCGCGTCGTCAACGCCACTCCATCCGTCCCGGCCAAGAAGCGCGTCCAGGC
GCCGTCGCCCCCGGAGTTCGCTGCTGCTCCTTCCCACGTCCCGGTGAAGAACCACGTACAGCTGCCGCCGCGCCCGGAGA
GCGTCCTCGCCGCCACTCCATCCGTCCCGGCGAAGAAGCGCGTCCAGGCTCCGTCGCCCCTGGAGCACGCCGCTCCTCCC
CCCGCCGTCCCGGCCAAGAAGCGCGTCCATGCGCCGTCGCCCCTGGGATACGCTGCCGCTCCCGTCGCCGTCCCAGCCAA
GCCGAGCGTCCTGGTGCCGTCGTGCCCGGAGGTCGTCGCCGTCGCCCCCTCCGTCCAGGCCAACAAGCGCCTTCCGTGGC
AGTCGCCACCGGAGGACGCTTCTGCTCGGGCCCCGGTTTGCCTCCCGGCGAATAAGCGCGTGATGTCGCAGTTCATCCCG
CCCTCTGCATCTCCACCATTGAAGTCAGATGGGGCTCTCGTCGGCGCCGTCAAAGAAGCCTGTCCTCAAGGCTTCGTTGA
AAGCGGCGCCGCCACCTATCCTAGGGTGGTGAATGGTGCTGAAGCGTCCAAGGACCAA----------------------
-----GTGTTCCAGAAATCCCGCAGAACAAACACTGCAAAAAGAGCGAGTGATCTGCACTGCAAGAAGCTCTCCGATGTC
ATCAGTGGCATGCAATTTGAAGTTCAGGCCGAAGAGCTCAAGGAATTCGAGCCAGCGAGTGATCTGCACTGCAAGAAGCT
CTCTGAAGTCGTCGGCAGCATGCAATCTGAAGTTCACGCCGAAGAGCTCAAGAAATTCGAGCAAACTAGTGATCTGCACT
GCAAGAAGCTCTCCGATGTCGTCGATGGCACACAATCTGAAGTTCAGGCCGAAGTGCTCAACAAATTCGAGCAAGCGAGT
GATCTGCACTGCAAGAAGGTCTCTGATGTCGTCGGTAGCATGCAATCTGAAGTTCAGGCTGAAGAGCTCAAGAAATTCGA
GCAACCTAGTGATCTGCCCTGCAAGAAGCTCTCCGATGCCGTCAATGGCACACAATCTGAAGTTCAAGCCGAAGCGCTCA
AGAAATTCGAGAAAACGAGTGATCTGCATTGC---AAGAAGCTCTCCAATGTCGTCAATGGCGAACAGTCTGAAGCTCAA
GCCGGAGTGCTCGAGAAATTCGAGCAAACGACTGATCTGCACGGCAAGAAGCTCCCCAATGTAGTCGTTGACGAACAGTG
TCAAGTTCAAGCCGAAGCGCTCAAGAAACCCGACCACGCGATTGATCCTAAAGTGGCAGCACCGGCACGCGAGGAGGAGC
ACACGAAGGAAGACGAAGAAGTGGCGGCCGAGCGAAGGCAAGACGCTCTCGCGGAAGAAGATGACGACGGCATCCTGTGC
GCGGTGTGCCGGAGCACCGACGGCGACCCGTCGGACCCCATCGTGTTCTGCGACGGGTGCGACCTCATGGTGCACGCCAC
CTGCTACGGCAACCCGCTGGCCCAGTCCATCCCGGACGGCGACTGGTTCTGCTCGCTCTGCTCCGGCAAGCCCCCCGCCG
CCGCCGTGGGGAAGAAGGGCAAGCCGGCGCGCCCGCCCTGCCGCCTCTGCCCGGCGAGGGGCGGCGCCATGAAGCGCACC
ACGGACGGCGCCTGGGCGCACATCGCGTGCGCGCTGCTGGTGCCGGAGGTGTTCTTCCGGGACCCGGACGGGCGCGAGGG
CATCGACTGCTCCCTCGTGCCCGGCCGGCGGTTCACCAGGCGCTGCTACGTCTGCGAGAGCAGCAGGGGCTGCGCGCTCG
AGTGCTCCCAGCCCAAGTGCGACCTCGGGTTCCACGTCTCCTGCGGCCTCAACGGCGGCCTCTGCATCGAGTACCGCGAG
GAGAAGGGCGGCGGCGTCGTCGCCGGCTTCTGCAGGGAGCACACCAAGCTCTGGGAGAAGGTAAGATTTTGTAATTTTCT
TGTCATTGTCTTGTTTGAACTTGCTTCAGGGATCTGATGTGAATTTTTTTGGTTGGATTTGTGTATGTGTTGGTGCAGCA
ACAACTGACTGGCAAGTACAAGATTGTTTCTCGAGGGCAGCAGTGA----------------------------------
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>chr3D_1_TraesCS3D01G116200
TTGTTTGGTGATAACAAACATGAACAACTGTTCT-ACTCACATGCAAAGTTTCTCAAAGGAATGGCATTCGCCTTTTTTC
CATTTTTTTCCGGATATATTCATCTTCAATCATGCCAATACAGCGAACACAAGAAAAATATATATAAATTACATCCAGAT
TCGTAGATCACCTAGCGACAAGTATAAGCACCG----------AAGGCGCGCCGCCGTCGTCGCCCCTCCCTCGCCGGAG
CCGGACACAACTTGTTGTAGTAGACAGTCGGAAAGTCGTCGTGAAAACAAT---TTTTTTGTCCAGAATTTGATGAATTT
CA-TTTTTTTCGCGAAACTTCACACGTGAGTAGCACATTCGACTATGTTTGCTATTTTTTTGAGTTGTTTATTTTTATTT
TTATTTGTTTATCTGCATCCAGGTTCCAAAAATCCATGTCCTCAGTTTGGGTCCTCACAATATTTTTTATAATTAGTCAA
TGTGTACGTGCAATGCACGTTAATTTGGAAGTATACTAAGTGCATGCGGATATTAAGTAGGATATTAATTGTGTGTTATT
ATGTGATTAGCATTATATTTGGCATGACGCACACTAAACGTGTTGAGCGCTCGACATAAAAGCAGTCTATATCGTTGGAT
TGACATGATTTGATGTCCGAGATTAATTGGATCTGCCTCTTTGGGTCTTTTTATATTGATTTATAGATATAGATATTTTC
TTGAGACACCAAAACTAGCTTGAAAGTGTGAATCTGGAGCTGCAGCCTTAAAAAGAGCCAATTCACATCC-AGCCCACGA
GACCAAGCCGC-TCCCAAAACGATAACTCCCAGCCCGACCCGCGCGCCCGCGCAACTGG-------TTCGCGCCATCCCT
CGAAAAGGAAAAAGGAAAAA--CCAATTCGCGCCGCGCCGCCACAATTTCATCTCTAAATCGCCCCCGAATGACGGCGAA
CCAAGAATTTCCGCGCGAACCGCATGCGCTTTCGCGGCCGGATTCGAAATTTCAAACCCAAAA----------GCCATGG
CGTTCCCT-TCCATTTCCGCATTTCGGCTCTCTTCCTCCCACCGCCGCCTCCTCCTCAAATTCGTCTCTCCAATTCCTCG
CGCGCTCGCCTCGATTCCAATCCCGAAAGTTTTCCGCCTCCGCCGGGATCATTTAAGCCCTTCTTCCCTCCTCGGGCAAA
TCACCCCGCGCACCGCGAGCCTGTTTCATAGCCAGATCACCGATCCA--AATCTCGCCGCCCCGCCCATGGAGATCGCCA
GGGACGCCGCCGCGAGCGGTGGCCGCAGCATCCGCGACCTGCCGCCTTCGAAGCGGTTCAAGTTCGTCGGCTCCAACCTC
GGGCCGATGCCGTGCCCGCCGCTGCCGGCGAAGAAGCGCGCGCTCCCGCCGCTGCCGGAGGCGGCGCCTGCCGCTGCCTG
CCTTCCGGCGAAGAAGCGCGCGTATGCGCTGCCGCTGGATGCCGTCTCGCCAGCGTGTCTTCCGGCCAAGAAGCGCGTCC
ACGTGCGCCCCCCTCCGCCGGAGGATAGCGCTCCTCCTCCCTCCGTCCCGTCCAAGAAGCCTCCCCTCGCTCCGGTGAAG
AAGCACGTCGGGGTGCCGCCGCTCCCGGAGCGCGTCGTCAACGCCACTCCATCCGTCCCGGCCAAGAAGCGCGTCCAGGC
GCCGTCGCCCCCGGAGTTCGCTGCTGCTCCTTCCCACGTCCCGGTGAAGAACCACGTACAGCTGCCGCCGCGCCCGGAGA
GCGTCCTCGCCGCCACTCCATCCGTCCCGGCGAAGAAGCGCGTCCAGGCTCCGTCGCCCCTGGAGCACGCCGCTCCTCCC
CCCGCCGTCCCGGCCAAGAAGCGCGTCCATGCGCCGTCGCCCCTGGGATACGCTGCCGCTCCCGTCGCCGTCCCAGCCAA
GCCGAGCGTCCTGGTGCCGTCGTGCCCGGAGGTCGTCGCCGTCGCCCCCTCCGTCCAGGCCAACAAGCGCCTTCCGTGGC
AGTCGCCACCGGAGGACGCTTCTGCTCGGGCCCCGGTTTGCCTCCCGGCGAATAAGCGCGTGATGTCGCAGTTCATCCCG
CCCTCTGCATCTCCACCATTGAAGTCAGATGGGGCTCTCGTCGGCGCCGTCAAAGAAGCCTGTCCTCAAGGCTTCGTTGA
AAGCGGCGCCGCCACCTATCCTAGGGTGGTGAATGGTGCTGAAGCGTCCAAGGACCAA----------------------
-----GTGTTCCAGAAATCCCGCAGAACAAACACTGCAAAAAGAGCGAGTGATCTGCACTGCAAGAAGCTCTCCGATGTC
ATCAGTGGCATGCAATTTGAAGTTCAGGCCGAAGAGCTCAAGGAATTCGAGCCAGCGAGTGATCTGCACTGCAAGAAGCT
CTCTGAAGTCGTCGGCAGCATGCAATCTGAAGTTCACGCCGAAGAGCTCAAGAAATTCGAGCAAACTAGTGATCTGCACT
GCAAGAAGCTCTCCGATGTCGTCGATGGCACACAATCTGAAGTTCAGGCCGAAGTGCTCAACAAATTCGAGCAAGCGAGT
GATCTGCACTGCAAGAAGGTCTCTGATGTCGTCGGTAGCATGCAATCTGAAGTTCAGGCTGAAGAGCTCAAGAAATTCGA
GCAACCTAGTGATCTGCCCTGCAAGAAGCTCTCCGATGCCGTCAATGGCACACAATCTGAAGTTCAAGCCGAAGCGCTCA
AGAAATTCGAGAAAACGAGTGATCTGCATTGC---AAGAAGCTCTCCAATGTCGTCAATGGCGAACAGTCTGAAGCTCAA
GCCGGAGTGCTCGAGAAATTCGAGCAAACGACTGATCTGCACGGCAAGAAGCTCCCCAATGTAGTCGTTGACGAACAGTG
TCAAGTTCAAGCCGAAGCGCTCAAGAAACCCGACCACGCGATTGATCCTAAAGTGGCAGCACCGGCACGCGAGGAGGAGC
ACACGAAGGAAGACGAAGAAGTGGCGGCCGAGCGAAGGCAAGACGCTCTCGCGGAAGAAGATGACGACGGCATCCTGTGC
GCGGTGTGCCGGAGCACCGACGGCGACCCGTCGGACCCCATCGTGTTCTGCGACGGGTGCGACCTCATGGTGCACGCCAC
CTGCTACGGCAACCCGCTGGCCCAGTCCATCCCGGACGGCGACTGGTTCTGCTCGCTCTGCTCCGGCAAGCCCCCCGCCG
CCGCCGTGGGGAAGAAGGGCAAGCCGGCGCGCCCGCCCTGCCGCCTCTGCCCGGCGAGGGGCGGCGCCATGAAGCGCACC
ACGGACGGCGCCTGGGCGCACATCGCGTGCGCGCTGCTGGTGCCGGAGGTGTTCTTCCGGGACCCGGACGGGCGCGAGGG
CATCGACTGCTCCCTCGTGCCCGGCCGGCGGTTCACCAGGCGCTGCTACGTCTGCGAGAGCAGCAGGGGCTGCGCGCTCG
AGTGCTCCCAGCCCAAGTGCGACCTCGGGTTCCACGTCTCCTGCGGCCTCAACGGCGGCCTCTGCATCGAGTACCGCGAG
GAGAAGGGCGGCGGCGTCGTCGCCGGCTTCTGCAGGGAGCACACCAAGCTCTGGGAGAAGGTAAGATTTTGTAATTTTCT
TGTCATTGTCTTGTTTGAACTTGCTTCAGGGATCTGATGTGAATTTTTTTGGTTGGATTTGTGTATGTGTTGGTGCAGCA
ACAACTGACTGGCAAGTACAAGATTGTTTCTCGAGGGCAGCAGTGACATGGAGATTGACGAGAAGAATCTGCCGATCAAT
TG--CTATGGATTGGTGAAGAATTGCATCGATCTCATAATTGTCTAGGATTGTGTCATTGTTCGTTCTAGTGTTTTCGTT
TTCTCCTTTTGGTGTGCCTTCTGCAATCTTCAGATATGGTAGAAGATTAGTAGTGTGTCATGGCATGTACTGTAGTTACT
TTGGAGTTTTATTGCCATAGTTTTATGGTGTAGTATGTAGAAAGCATGTAGTA---GTAGCTGTTAAGCTTCAGCTCACT
TCTGATGTCAAG--------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------AAGTTGGGTTG
CTCCTACCTCTTTAGAGACTTGGATTATTTTCAATAAGCAGAGTTTGAAGTCTATAGGTTGGATTAACAGTCTCTAGTTG
TAATTTGGTGTCAGTATATTGAAATAAGAGCATGTATTTTCCAG--TGTTGGCCGTTGTTGCGAGCAAGCATTAGTATTT
GCCTCGGAATTTATTCAGTAACCCAATTAGCGGATTACAATAGCGTGCAATCACCTCCGTGCGA---AGTAGTGCAGACA
ATGAGCATCTGTGCTGCTTGATCTGACTAAAGAATTCAAAACCGCATCTTCAGATCGCTGACAATCACAAAATTTCACTC
TCATCAACTTGGTCCAAGATGATTATGTTTCCCGGCGCAGATAATTGTAAAGAAACAAGTTCTGACATTATCTTTCCAGG
TAAAAAGAAACAAAACAAGGGGATAATGCCGCTTTCAAAATGTTGAAATGAAGCCCTAAATCTGAATCGGCAAGTGCCTG
AATAAGCCAGTCGGTCAGGTGCT---------------------------------------------------------
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----CCCACATGAACCTGCCACTAACTTATCTTAGCCATATCTGTATGACTGTATCTATCCATGTAGTGGCGGCCAAGCA
CAACGTTGCCTTGTCTCGTTCCTTTGCCGTGCCCAGCTGTGTCATCTGCCATCGGGCCCTCTCAACGTGCAGCTTGGAGG
GCCAATAACGTGCTCCCATGCGCAACCACGCTCGGATACAAAAACGCCGCCGGT
>chr3D_1
TTGTTTGGTGATAACGAACATGAACAACTGTTCT-ACTCACATGCAAAGTTTCTCAAAGGAATGACATTCGCCTTTTTTT
CATTTTTTT---GATATATTCATCTTCAATCATGCCAATACAACGAACACAA---AAAAATATATAAATTACATCCAGAT
TCGTAGATCACTTGGCGACAAGTATAAGCACTGAAGCAAGCCGAAGGTGCGCCGCTGTCGTCGCTCCTCCCTCGCCGGAG
CTGGACACAACTTGTTGTAGTAGACAATCGGAAAGTCGTCGTGAAAACT-T---TTTTTTGTCCAGAAATTTTTA-----
-A-TTTTTTTCGCGAAACTTCACACGTGAGTAGCACATTCGACTATGTTTGCTATTTCTTCGAGTTGTTTACTCTTATTT
AT-TTTGTTTATTTGCATCCAGGTTCCAAAAATCCATGTCCTCAGTATGGGTCCTCACAATACTTTTTATAACTAGTCAA
TGTGTACGTGCAATGCACGTTAATTTGGAAGTTTATTAAGTGCATGCGGATATTAAGTAGAATATTA-------------
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>chr3B_7
------GGTGATAACAAACATGAACAATTGTTCAAACTCACATGCAAAGTTTCTCAAAGGAATGACATTCGCCTTTTCCC
CATCTTATTTGT-ATATATTCATCTTCAATCATGCCTATACAGCGAACACAAGAAAAAAGT------ATTGCATCCAGAT
TCGTAGACCACCTGGCGACAAGTACACGCACTGAAGCGATCCAAAGGCGCGCCGCCGTCATCGCCCCTTATTCACCGGAG
CCGG--ACAACTTGTTGTAGTAAACAGTCGGAAAGTAGTTGTGAAAACATTTTATTTTTGGTCAAGAATTTGATGAACTT
CATTTTTTTTCGCGAAACTTCACACGTGAGTAGCACATTCGACTGTGTTTGCTATTTTTTCGAGTTGTTGT---------
-T-TTTGTTTATCTGCACCGAGGTTCCAAAAATCCATGTCCTCAGTTTGGGTCCTCACAATACTTTTTATAACTATTTAT
TTGAGAAACAAAACTATTTTTCGTC-------------------------------------------------------
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--AAGACACCAAAACTAACTTGAAAGTGCGAATCTCGAGCTGCAGCATTAAAAAGGGCCAGTTCACATCTAAGCCCACGA
GGCTAACCCGG-TCCCAAAACGA-AATCCCCAGCCCGACCCGCGCGCCCGCGCAACTGATTCGTCATTCGCGCCATCCCT
CAAAAA-GAAAAAGGAAAAA--CCAATTCGCGCCGCGCCGCCACGATTTCATCGCTAAATCG-CCCCCGAACGAACGAAA
CAACAAATTTCCGCGCGAACCACAGGCGCTTTCGCGGCCGGATTCGAAATTTCAAGCCGAAAATCCCCGAGACGCCATCG
CGTTCCCT-TCCATTTCGGCAA--------TCTTCCTCCTACCGCCC------CCTCAAATTCGTTTCTCCAAATCCTCG
CGCGCTCGTCTCGATTCCAATCCCGGAATTTTTC-GCCTCCGCCGGGATCATTTAAGCCCGTCTTCCCTCCTCGGTCAAA
TCACCCCGCGCCCCGCGAGCCTGTTTCGTAGCCAAATCACCGATCCA--AATCTCGCCGCCCCGCACATGGAGATCGCCG
GGGACGCCGCCGCGAGCGGTGGCCGCGGCATCCGCGACCTGCCGCCGCTGAAGCGGTTCAAGTTCGTCGGCTCCAACCTC
GGGTCAGCGCCGTGCCCGCCGCTGCCCGCCAAGAAGCGCGCGCTCCCGCCGCTGCCGGAGGCGGCGCCTGCCCCTGCCTG
CCTTCCGGCGAAGAAGCGCGCGTGTGCGCCACCGCTGGATGCCATCTCGCCGGCGTGTCTTCCGGCCAAGAAGCGCGTCC
ACGTGCGCCCCCCTCCGCCGGAGGATAACGCTCCTCCTCCCTCCGTCCCGTACAAGAAGCCTCCCCTCGTTCCGGTGAAG
AAGCGCGTCGAGGTGCCGCCGCTCCCGCAGCGCGTCGTCAACGCCAATCCATTCGTTCCGGCCAAGAAGCGCGTCCAGGC
GCCGTCGCCCCCGGAGTACGCTGCTGCTCCGCCCCCCGTCCCGGTGAAGAACCATGCCCAGATGCCGCCGCGCCCGGGGA
GCATCGTCGCCGCTACCCCAGGCGTCCCGGCGAAGAAGCGTGTCCAGGCTCCATCGCCCCTGGAGCACGCCGCCCCTCCC
CCGACCGTTCCGGCCAAGAAGCGGGTCCAGGCGCCGTCGCCCCTGGGGATCGCCGCTGCTCCTCTCTCCGTCCCGGCCAA
GCAGCGCGTCCCTGTGCGGTCGTGCCCGGAGGGCGTCGCCACCGCCCCCTCCGTCCAGACCAACAAGCGCGTTCCGTGGC
AATCGCCCCCGGAGGACGCTTCTGCTCGGGCCCCGGTTTGCCTCCCGGCGAATAAGCGCGTGATGTCGCAGTTCATCCCG
CCCTCTCCATCTTCATCGATGAAGTCAGATGGGGCTCGCGTCGGCGCCCTCAAAGAAGCCTGTCCTCAAGGCTTCGTTGA
AAGCGGCGCCGCCACCTATCCTAAGGCGGCGAATGGTGCTGAAGCGTCCAAGATGACCAACAAGCCCGACGAAGTCAAGG
ATCAGGTGTTCCAGAAATCCCGCAGAACAAACACCGCAAAAAGAGCGAGTGGCCTGCACTGCAAGAAGCTCTCCGATGTC
ATCAATGGCATGCAATCTGAAGTTCAGTCCGAAGAGCTCAAGAAATTCGAGCCAGCGAGTGATCTGCACTGCAAGAAGCT
CTCTGAAGTCGTCGGTAGCATGCAGTCTGAAGTTCATGCCGAAGAGCCCAAGAAGTTCGAGCAAACTAGTGATCTGCACT
GCAAGAAGCTCTCCGATGCCGTCAATGACACACAATCTGAAGTTCAGGCCAAAGCGCTCAAGACATTCGAGCAAACTAGT
GATCTGCACTGTAAGAAGCTCTCTGATGTCGTCGGTAGCATGCAATCTGAAGTTCAAGCCGAAGACCTCAAGAAATTCGA
GCAAACTAGTGACCTGCACTGCAAGAAGCTCCCCGATGCCGTCAATGACGCACAGTCTGAAGTTCAAGCCGAAGTGCTGA
AGAAATTCGAGCAAACGAGTGATCTGCATTGC---AAG---CTCTCCAATGCCGTCAACGGCGAACAATCTGAAGCTCAA
GCCGAAGTGCTTGAGAAATTCGAGCAAACGGCTGATGTGCACTGCAAGAAGCTCCCCAATGTAGTCGATGACGAACAGTG
TCAAGTTCAAGCGGAGGCGCTCACGAAATTCGACCACGCGATTGTTCCTGAAGTGGCAGCGCCAGCACGCGAGGAGGAAC
ACACGCAGGAAGACGAAGAAGTGGCGGCCGAGCGAAGGCAAGATGCTCTCGCGGAAGAAGAGGACGACGGCATCCTCTGC
GCGGTCTGCCGAAGCACCGACGGCGACCAGTCGGACCCCATCGTGTTCTGCGACGGGTGCGACCTCATGGTGCACGCCAC
GTGCTACGGCAACCCGCTGGCCCAGTCCATCCCGGACGGCGACTGGTTCTGCTCGCTCTGCTCCGTCAAGCCC---GCCG
CCGCCGCGGGGAAGAAGGGCAAGCCGGCACGCCCGCCCTGCCGCCTCTGCCCGGCGAGGGGCGGCGCCATGAAACGCACC
ACGGACGGCGCGTGGGCGCACATCGCGTGCGCGCTGCTGGTGCCGGAGGTGTTCTTCGGGGACCCGGACGGGCGCGAGGC
CATCGACTGCTCCCTCGTGCCCGGCCGGCGGTTCACCAGGCACTGCTACATCTGCGAGAGCAGCAGGGGCTGCGCGCTCG
AGTGCTCCCAGCCCAAGTGCGACCTCGGGTTCCACGTCTCCTGCGGCCTCAACGGCGGCCTCTGCATCGAGTACCGCGAG
GAGAAGGGCGGCGGCGTCGTCGCCGGCTTCTGTAGGGAGCACACCAAGCTCTGGGAGAAGGTAAAATCCTGTGATTTTCT
TGTCATTGTCTTGTTTGAGCTTGCTTCAGCGATCTGATGTGAAACTTTTTGGTTGGATTTGTGTATGTGTTGGTGCAGCA
ACAACTGACTGGCAAGTACAAGATTGTTTCTAGAGGGCAGCAATGACATGGAGATGGAAGAGAAGAATCTGGCGATCAAT
TG--CTATGGAATGGTGAAGAATTGCATC----TCATAGTTGTCTAGGATTGTGTCATTGTTC----TAGTGTTTTTATT
TTCTCCTTTTGGTGTGCCTTCTGCGATCTTCAGATATGGTAGAAGATTAGAGGTGTCTCATGGCATG-----TAGTTACT
TTGGAGTTCTATTGGCACAGTTTTATGGTGTAGTCTGTAGAAAGCATGTAGTA---CTAGCTGTTAAGCTTCAGCTCATT
TCTGATGTCAAG--------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------AAGTTGGGTTG
TTCCTACCTCTT-AGAGACTTGGATTATTTTCAATAAGCAGAGTTTGAAGTCTA--GGCTGGATTAACAGTCTCTAGTTG
TAATTTGGTGTCAGTATATTGAAATAAGAGCATGTATTTTCCACAG----------TGTTGCGAGCAAGCATTAGGATTT
GCCTCGGAATTTATTCAGTAACCCAATTAGCAGATTATAATAGCGTGCAATCACCTCCGTGCGA---AGTAGTGCAGGCA
ATGAGCATCTTCGCTGCTTGATGTGACTAAAGAATTCAAAACCGCATCTTCAGATCGCTGACAATCACAAATTTTCACTC
TCAGCAACTTGGTCCAAGATGATAACATTTCCCGGTGCAGAT--------AGAAACAAGTTCTGACGTTATCTTTCCAGG
TAAAAAGAAACAAAACAAGGGGACAATGCTGCTTTCAAAATGTTGAAATGAAGCCCTAAATCTGAATCGGCAAGTGCCTG
AATAAGTCAGTCGGTCAGGTGCTCCCACGGAACCGGATCCTCTAAGATGGAGAAGTAAAGTCTCGATGCTATAGTGCTAG
TCTAGTGTAAAATGAAAAAGAAAAGTTAAGAACTGTTAGTATATACTCCCTCCGTCCGGAAATACTTGTCATCAAAATGA
ATAAAAGAGGATGTATCTAGATGTATTTTAGTTCTAGATACATCTCTTTTTGTTCATTTTGATGACAAGTATTTTCGGAC
AGAGGGAGTATTAGTAGGCCTTTTGCTGTTGGTATTTACTGTAAATATAAATAATTTAAAATTAATTTTATTTCACCATG
AGTTTGTTTGCATGTAATTAATATAAATGTGCAGAGTAGATCATCAATTTACAAATTAACTTAAATTGTTTTAATCATAA
TGATATAGACAGGAAGAAAGAAAGTTAGGGTATTGCAGCTTCTTTAATTTTCTTTCTTAATGTTAGAGGATCTAGTTCCG
TGCTCCCACATGAACCTGCCACTAACTTATCTTAGCCATATCTGTATGACTGTATCTA----------------------
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>chr3A_699
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--------------TATTTTTTGTC-------------------------------------------------------
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--GAGACACCAAAACTAGCTTGAAAGTGTGAATCTGGAGCTGCAGCCTTAAAAAGGCCCA-TTCATATCT-AGCCCACGA
GACCAAGCTGGCTCCCAAAACGA-AACTCCCAGCCCGACCCGCGCGCTCA--------G-------TTCGCGCCATCCCT
CAAAAG-GAAAAAGGAAAAAAACCAGTTCGCGCCGCGCCGGCACAATTTCATCGCTAAATCGCCCCCCGAATGGACGAAA
CCACAAATTTCCGCGCGAACCGCATGCGCTTCCGCGGCCGGATTCGAAATTTCAAGCCTAAAATCCCCGAGACGCCATCG
CGTTCCCTCTCCATCCCGGCAA--------TCTTCCTCCCACCGCCC---CCTCCTCAAATTCGTTTCCCCAAATCCCCG
CGCTT--GTCTCGATTCCAATCCCGGAAATTTTC-TCCTCCGCCGGGATCATTTAAGCGCTTCTTCCCTCCTCGGTCAAA
TCACTCCGCGCCACCCCGCGAAATCACGAAGCCAATCTCAGACCAGTCCAATCTCGCCGCCCCGTCCATGGAGATCGCCG
GGGACGCCGTGGCGAGCGGTGGCCGCAGCATCCGCGACCTGCCGCCGCTGAAGCGGTTCAAGTTCGTCGGCTCCAACCCC
GGGTCGGCGCCGTGCCTGCCGCTGCCGGCCAAGAAGCGCGGGCTCCCGCCGCTGCCGGAGGTGGCGCCTGCCCCTGCCTG
CCTTCCGGCGAAGAAGCGCGCGTATGCGCCACCGCTGGATGCCGTCTCGCCGGCGTGTCTTCCGGCCAAGAAGCGGGTCC
ACGTGCGCCCCCCGCCGCCGGAGGGTAACGCTCCTCCTCCCTCCGTCTCGTCCAAGAAGCCTCCCCTCGTTCCGGTGAAG
AAGCTCGTCGAGGTGCCGCCGCTCCATGAGCGCGTCGTCAACGCCATTCCATCCGTTCCGGCCAAGAAGCGCGTCCAGGC
GCCGTCGCCCCCGGAGTACGCTGCTGCTCCTCCCCCCGTCTCGGTGAAGAACCAAGTCCAGATGCCGCCGCGCCCGGGAA
GCGTCGTCGCCGCCACCCCAGCCGTCCCGGCGAAGAAGCGCGTCCAGGCCCCGTCGCCCCTGGAGCACGCCGCTCCTGCC
CCCGCCGTCCCGGTCAAGAAGCGCGTCCATGCGCCGTCGCCCCTGGGATACGCTGCTGCTCCCGTCGCCGTCCCGGCCAA
GCAGCGCGTCCTGGTGCCGTCGTGCCCGGAGGGCGTCGCCGCCGCCCCCTCCGTCCAGGCCAACAAGCGTGTTCCGTGGC
AGTCGCCCCCGGAGGACGCTTCTGCTCTGGCCCCGGTTTGCCTCCCGGCCAATAAGCGCGTGATGTCGCAGTTCATCCCG
CCCTCTTCATCTCCATCGATGAAGTCAGATGGGGCTCGCGTCGGTGCCGTCAAAGAAGTCTGTCCTCAAGGCTTCGTTGA
AAGCGGCGCCGCCACCTATCCTAAGGTGGCGAATGGTGCTGAAGCGTCCAAGATGATCAACAAGCCCGACGAAGTCAAGG
ATCAGGTGTTCCAGAAATCCCGCAGAACCAACACTGCAAAGAGAGCTAGTGATCTGCACTGCAAGAAGCTCTCCGATGTC
ATCAGTGGCATGCAATCTGAAGTTCAGGCCGAAGAGCTCAAGAAATTTGAGCAAGCGAGTGATCTGCACTGCAAGAAGCT
CTCTGAAGTCGTCGCTAGCATGCAATCTGAAGTTCATGCCGCAGAGCCCAAGAAATTCGAGCAAACTAGTGATCTGCACT
GCAAGAAGCTCCCCGATGCCGTCACTGGCACACAATCTGAAGTTCAGGCCGAAGACCTCAAGAAATTCGAGCAAAC----
-----------------GCTTTCTGATGTCGTCGGTAGCATGCAATCTGAAGTTCAAGCCGAAGACCTCAAGAAATTCGA
GCAAACTAGTGATCTGCGTTGCAAGAAGCCATCCGATGCCGTCAATGACACACAGTCTGAAGTTCAAGCCGAAGCGCTCA
AGAAATTCGAGCAAACGAGTGATCTGCACTGCAAGAAG---CTGTCCAATGTCGAAAACGGCGAACAGTCTGAAGCTCAA
GCCGAAGTGCTCGAGAAGTTCGAGCAGACGACTTATCTGCACTGCAAGAAGCCCCCCAATGTAGTCGATGACGAACAATG
TCAAGTTCAAGCCGAAGCGCTCAAGAAATTCGACCGCGCGATTGATCCTGAAATGGCAGCGCCGGCAAGCGAAAAGGAGC
ACATGAAGGAGGACGAAGAAGTGGCCACCGAGCGAAAGCAAGATGCTCTCGCGGAAGAAGAGGAGGACGGCATCCTCTGC
GCGGTGTGCCGGAGCACCGACGGCGACCCGTCGGACCCCATCGTGTTCTGCGACGGGTGCGACCTCATGGTGCACGCCAC
GTGCTACGGCAACCCGCTGGCCCAGTCCATCCCGGACGGCGACTGGTTCTGCTCGCTCTGCTCCG------------CCG
GCGCCGCGGGGAAGAAGGGCAAGCCGGCACGCCCGCCCTGCCGCCTCTGCCCGGCGAGGGGCGGCGCCATGAAGCGCACC
ACGGACGGCGCCTGGGCGCACATCGCGTGCGCGCTGCTGGTGCCGGAGGTGTTCTTCCGGGACCCGGACGGGCGCGAGGC
CATCGACTGCTCCCTCGTGCCCGGCCGGCGGTTCACCAGGCGCTGCTACATCTGCGAGAGCAGCAGGGGCTGCGCGCTCG
AGTGCTCCCAGCCCAGGTGCGACCTCGGGTTCCACGTCTCCTGCGGCCTCAGCGGCGGCCTCTGCATCGAGTACCGCGAG
GAGAAGGGCGGCGGCGTCGTCGCCGGCTTCTGCAGGGAGCACACCAAGCTCTGGGAGAAGGTAAAGTCCTGTAATTTTCT
TGTCAGTGTCTTGTTTGAACTTGCTTCAGCGATCTGATGTGAAATTTTTTGGTTGGATTTGTGTGTGTGTTGGTGCAGCA
ACAACTGACTGGCAAGTACAAGATTGTTTCTAGAGGGCAGCAATGACATGGAGATGGAAGAGAAGAATCTGGCGATCAAT
TGTGCTATGGAGTGGTGAAGAATTGCATC----TTATAACTGTCTAGGATTGTGTCATTGTTC----TACAGTAGTAT--
------TTTTGGTGTGCCTTCTACAATCTTCAGATATGGTAGAAGATTAGAAGTGTGTCATGGCATGTACTGTAGTTACT
TTGGAGTTTCATTGCCATAGTTTTATGGTGTAGTCTGTAGAAAGCATGTAGTAGCACTAGCAGTTAAGCTTCAGCTCACT
TCTGTTGTTAGTACTACCTCTCTCTCAGTTTACAGGGCGTGCGCGTACTCCTAGGTCGTCAATTTGACCAACCTAATACA
AGTCATATATTACAAAAAATATACCAACATAAACTTCAGAGTTTCTACTTTCAAAAGGTATCATTTTTATGTTCTATAGT
TTATATTAGAGTGATAAAATTGACAACCTAGATATACGTGTAGGACTTGTAAACTGAAACGGAGGTAGTAAGTTGGGTTG
TTCCTACCTCTT----------GATTATTTTCAATAAGCAGAGTTTGAAGTCTATAGGTTGGATTAACACTGTCTAGTTG
TAATTTGGTGTCAG--TATTGAAATAAGAGCATGCATTTTCCAAACTGCTGGCCGTTGTTGCGAGCAAGTATTAGTATTT
GATTCAGAATTTATTCAGTAACCCAATTAGCAGATCATAATAGCGTGCAACCACGTCCGTGCGAAGTAGTAGTGCAGACA
ATGAGCATCTTCGCTGCTTGATCTGACTAAAGAATTCAAAACCGCATCTTCAGATCGCTGACAATTGCAAAATTTCACTC
TCATCAACTTTGTCCAAGATGATAATATTTCCCCGTGCACATAATTGTAGAGA---------------------------
---------------------------------------------------------------GAATCGGCAAGTGTCTG
AATAAGTCAGTCGGTCAGGTGCT---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----CCCACATGAACCTGCCACTAACTTATCTTAGCCATATCTGCATGACTGTATCTATCCGTCTAGTTGCGGCCAAGCA
-AACGTTGCCTTGTCTTGTTCCTTTGCCG---------------------------------------------TGGAGG
GCCAATAACGTGCTCCCATGCGCAACCACGCTCGGATACAAAAACGCCGCCGGT
>SNPs
----------------------------------------------------------------S---------------
---------SSS----------------------------------------------S---------------------
-------------S-----------------S------------------------------------------------
-------------------------------------------------S---------------------------S--
------------------------------------------------------------S----------S-S------
S-S-----------------------------------------------------------S---------S-------
--------------------------------S--S------------------------S------SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS-----------------------------------------------------S----S--------S----------
----------S------------S--------------------------------------------------------
-S----S----------------------------------------------S-------------SS-SSSSSSSS--
---SS--------------------------------------------------S--S-------------------S-
-----------------S---SSSSSSSSS----------------SSSS---------------S-------S------
--------S----------------S--S-----S----------------------------------------S----
-----------S---------------S------S--------------------------------------------S
----------------------------------------------SSS-------------------------------
---S--SS---------------------S------------------------------------------S-------
-----------------------------SS--------------------S----------------------------
---------------------------S-----------------------------------------S----------
----S-----S-----------------------------------S---------S-----------------------
-----------------S-------------S---S------------------S--S---S---------------S--
-----S----------S---S-----------------------------------------------------------
--------------------------------------------------------S-----------------S-----
--S-S---------------------------S--------S----------------------------S---------
-------S------------------------------------------------------------------------
------S--------S-SS------------------S------------------------------------------
-----------------------S-----S----------------------SSSSSS----------------------
--------------------------------------------------------------------------------
----------------S-------------------------S-------------------------------------
---------------S--------------------S----------S--------------------------------
------------------S----S------------------------------S------S------------S-S---
-----------S------S-------------------------------------S--S-----S--------------
----S------------S-----------------------------S------S-------------------------
-----------S--------------------------SSS-----------------S---------------------
----S-------------------------------------S------------------------S------------
----------------------------SS-------------------S----------S-------------------
-------------------------------------------S-----------------S--------------S---
--------------------------------------------------------------------------------
S----------------------------------------------------------------S-------SSS----
------S---------------------S---------------------------------------------------
-------------------------------------------------------------------------------S
-------------------------------------------------S------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------S--SS-----------
-----------------------------S-------------S------------------------------------
-------------------------------S----------S------------S--S------------S--------
-----------S-----------------SSSS------------------------------SSSS---------SS--
--------------------------------------------------S-----------------------------
----------------------------------S---------------------S-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
S-----------S-------------------------------------------------------------------
-------------------------------------------S----S-------------------------------
-------------------------------S-----S------------------------------------------
----------SS--------------------------------------------------------------------
-----------------------S--S--------S-------------S----------------S-------------
-----------------------S-----S--------------------------------------------------
------S-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------S-S----S-----------
S---------------S------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------
------------------------------------------------------
>forward_613
--------------------------------------------------------------------------------
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---------------------------------CTAAACGTGTTGAGCGCTCG---------------------------
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>reverse_2658
--------------------------------------------------------------------------------
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-----------------CCTGCAAGAAGCTCTCCGAT-------------------------------------------
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>forward_2218
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--------------------------------------CTGAAGCGTCCAAGGACCAA----------------------
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>reverse_3736
--------------------------------------------------------------------------------
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-------------------------------------------------------TGACGAGAAGAATCTGCCGA-----
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------------------------------------------------------
