Multiple sequence alignment - TraesCS3D01G106800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G106800 chr3D 100.000 3245 0 0 1 3245 59255376 59258620 0.000000e+00 5993
1 TraesCS3D01G106800 chr3A 93.510 2835 117 34 322 3104 68119341 68122160 0.000000e+00 4154
2 TraesCS3D01G106800 chr3A 85.171 263 25 6 46 308 68118598 68118846 1.160000e-64 257
3 TraesCS3D01G106800 chr3B 92.378 2729 121 39 1 2680 94854977 94857667 0.000000e+00 3807
4 TraesCS3D01G106800 chr3B 86.133 512 36 22 2713 3201 94857740 94858239 1.330000e-143 520
5 TraesCS3D01G106800 chr1D 79.000 600 112 10 1329 1924 140785359 140784770 6.520000e-107 398
6 TraesCS3D01G106800 chr1A 78.631 599 116 8 1329 1924 150006898 150007487 1.410000e-103 387


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G106800 chr3D 59255376 59258620 3244 False 5993.0 5993 100.0000 1 3245 1 chr3D.!!$F1 3244
1 TraesCS3D01G106800 chr3A 68118598 68122160 3562 False 2205.5 4154 89.3405 46 3104 2 chr3A.!!$F1 3058
2 TraesCS3D01G106800 chr3B 94854977 94858239 3262 False 2163.5 3807 89.2555 1 3201 2 chr3B.!!$F1 3200
3 TraesCS3D01G106800 chr1D 140784770 140785359 589 True 398.0 398 79.0000 1329 1924 1 chr1D.!!$R1 595
4 TraesCS3D01G106800 chr1A 150006898 150007487 589 False 387.0 387 78.6310 1329 1924 1 chr1A.!!$F1 595

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
957 1467 0.457035 CGAACGAGAATTACGGGGGA 59.543 55.0 8.86 0.0 34.93 4.81 F
1122 1639 1.595993 CCGCGTCTTCCTTCCTCTCA 61.596 60.0 4.92 0.0 0.00 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1945 2469 0.036875 CCCTTCTTCTTTGCCGGAGT 59.963 55.0 5.05 0.0 0.0 3.85 R
2842 3458 0.110056 CGTGCACAAATCCTCACAGC 60.110 55.0 18.64 0.0 0.0 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 6.094325 TGAGAAACTAAAGAAAACTTTCGCCA 59.906 34.615 0.00 0.00 41.92 5.69
82 83 2.122547 GGGAGGGAGGCGGGATTA 60.123 66.667 0.00 0.00 0.00 1.75
97 98 2.319890 GATTACGGGACATGGGCGGT 62.320 60.000 0.00 0.00 0.00 5.68
178 180 2.657459 AGAAAGGAAGAGAGAGAGGGGA 59.343 50.000 0.00 0.00 0.00 4.81
185 187 1.782752 AGAGAGAGAGGGGAGAGATGG 59.217 57.143 0.00 0.00 0.00 3.51
362 845 1.339535 GGCAAGGGCTAGATATGCTCC 60.340 57.143 0.00 0.00 40.87 4.70
371 861 7.596407 AGGGCTAGATATGCTCCAACTATATA 58.404 38.462 0.00 0.00 0.00 0.86
441 931 2.432510 GAGTTGGATCCAAGATCGACCT 59.567 50.000 27.73 18.17 36.52 3.85
455 945 1.228552 GACCTCTGCCCAAGCCAAA 60.229 57.895 0.00 0.00 38.69 3.28
458 948 1.228675 CTCTGCCCAAGCCAAACCT 60.229 57.895 0.00 0.00 38.69 3.50
701 1197 3.770933 ACAATTACTCCTAGCCCGTTGTA 59.229 43.478 0.00 0.00 0.00 2.41
702 1198 4.117685 CAATTACTCCTAGCCCGTTGTAC 58.882 47.826 0.00 0.00 0.00 2.90
703 1199 2.814805 TACTCCTAGCCCGTTGTACT 57.185 50.000 0.00 0.00 0.00 2.73
717 1213 6.036408 GCCCGTTGTACTACATAAGTTTTAGG 59.964 42.308 8.18 0.00 39.80 2.69
828 1324 1.135460 GGCTCAGTTTGCAGCTCATTC 60.135 52.381 0.00 0.00 35.82 2.67
839 1335 7.712205 AGTTTGCAGCTCATTCAAAAACTTTAT 59.288 29.630 0.00 0.00 33.78 1.40
841 1337 8.519492 TTGCAGCTCATTCAAAAACTTTATAC 57.481 30.769 0.00 0.00 0.00 1.47
852 1362 8.301730 TCAAAAACTTTATACAGTACGTGAGG 57.698 34.615 0.00 0.00 0.00 3.86
858 1368 8.517062 ACTTTATACAGTACGTGAGGTAGAAT 57.483 34.615 0.00 0.00 0.00 2.40
941 1451 2.494073 AGAAAAACCAACTTGGCACGAA 59.506 40.909 7.81 0.00 42.67 3.85
957 1467 0.457035 CGAACGAGAATTACGGGGGA 59.543 55.000 8.86 0.00 34.93 4.81
1122 1639 1.595993 CCGCGTCTTCCTTCCTCTCA 61.596 60.000 4.92 0.00 0.00 3.27
1965 2489 0.324943 CTCCGGCAAAGAAGAAGGGA 59.675 55.000 0.00 0.00 0.00 4.20
1968 2492 1.443802 CGGCAAAGAAGAAGGGAGTC 58.556 55.000 0.00 0.00 0.00 3.36
2279 2814 3.945981 ATTTTACGAAATTTGGCGGGT 57.054 38.095 0.00 0.00 31.48 5.28
2282 2823 0.961358 TACGAAATTTGGCGGGTGGG 60.961 55.000 0.00 0.00 0.00 4.61
2454 3002 9.155975 TCTATCTGAATTTGTAACTGCTTCTTC 57.844 33.333 0.00 0.00 0.00 2.87
2569 3128 5.407387 TCTTGACGGACAGTTTTGTAATAGC 59.593 40.000 0.00 0.00 37.76 2.97
2616 3178 5.605256 CGCGTGAATTTTTCTTGAAAACGAG 60.605 40.000 16.40 11.55 39.87 4.18
2617 3179 5.229260 GCGTGAATTTTTCTTGAAAACGAGT 59.771 36.000 16.40 2.21 39.87 4.18
2653 3215 5.665459 CTTAGGAATATATTCTGGAGCCCG 58.335 45.833 21.80 3.24 37.00 6.13
2711 3325 4.138290 TGATTTTGTACGCCAGAGGAAAA 58.862 39.130 0.00 0.00 0.00 2.29
2739 3353 3.364964 CGGTGTTGAATTACAGGAAGTGC 60.365 47.826 0.00 0.00 0.00 4.40
2802 3418 0.729116 CGTGAGGCATAAGCTGTTGG 59.271 55.000 0.00 0.00 41.70 3.77
2826 3442 3.949113 GGGCAAAAGGGTCATTCGTTATA 59.051 43.478 0.00 0.00 0.00 0.98
2850 3466 2.134789 AAAGGGCATAAGCTGTGAGG 57.865 50.000 3.69 0.00 41.70 3.86
2852 3468 1.516110 AGGGCATAAGCTGTGAGGAT 58.484 50.000 3.69 0.00 41.70 3.24
2853 3469 1.849039 AGGGCATAAGCTGTGAGGATT 59.151 47.619 3.69 0.00 41.70 3.01
2854 3470 2.243221 AGGGCATAAGCTGTGAGGATTT 59.757 45.455 3.69 0.00 41.70 2.17
2855 3471 2.360165 GGGCATAAGCTGTGAGGATTTG 59.640 50.000 3.69 0.00 41.70 2.32
2856 3472 3.019564 GGCATAAGCTGTGAGGATTTGT 58.980 45.455 3.69 0.00 41.70 2.83
2956 3572 2.438385 CTTTTCCCAACACGCGACCG 62.438 60.000 15.93 2.72 41.14 4.79
3084 3700 5.426504 CATCTTTGGTCTGCAGTCTAATCT 58.573 41.667 14.67 0.00 0.00 2.40
3088 3704 3.173151 TGGTCTGCAGTCTAATCTTCCA 58.827 45.455 14.67 6.88 0.00 3.53
3096 3712 4.808364 GCAGTCTAATCTTCCAGTGCTAAG 59.192 45.833 0.00 0.00 33.22 2.18
3098 3714 5.026790 AGTCTAATCTTCCAGTGCTAAGGT 58.973 41.667 4.25 0.00 0.00 3.50
3107 3745 4.359105 TCCAGTGCTAAGGTTGGTACTAT 58.641 43.478 0.00 0.00 33.26 2.12
3158 3796 9.886132 ATCCGTTCTTTATTAACTTGTGATAGT 57.114 29.630 0.00 0.00 0.00 2.12
3186 3824 8.958506 AGAGTTAGTAGTAGTACATGGTTGAAG 58.041 37.037 10.33 0.00 0.00 3.02
3197 3835 2.568623 TGGTTGAAGAAGAAGGGAGC 57.431 50.000 0.00 0.00 0.00 4.70
3198 3836 2.057922 TGGTTGAAGAAGAAGGGAGCT 58.942 47.619 0.00 0.00 0.00 4.09
3199 3837 3.248024 TGGTTGAAGAAGAAGGGAGCTA 58.752 45.455 0.00 0.00 0.00 3.32
3200 3838 3.008049 TGGTTGAAGAAGAAGGGAGCTAC 59.992 47.826 0.00 0.00 0.00 3.58
3201 3839 3.262151 GGTTGAAGAAGAAGGGAGCTACT 59.738 47.826 0.00 0.00 0.00 2.57
3202 3840 4.466726 GGTTGAAGAAGAAGGGAGCTACTA 59.533 45.833 0.00 0.00 0.00 1.82
3203 3841 5.129650 GGTTGAAGAAGAAGGGAGCTACTAT 59.870 44.000 0.00 0.00 0.00 2.12
3204 3842 6.324254 GGTTGAAGAAGAAGGGAGCTACTATA 59.676 42.308 0.00 0.00 0.00 1.31
3205 3843 7.430441 GTTGAAGAAGAAGGGAGCTACTATAG 58.570 42.308 0.00 0.00 0.00 1.31
3224 3862 3.892200 CCAACTCATGGCCAACAAC 57.108 52.632 10.96 0.00 43.80 3.32
3225 3863 1.039068 CCAACTCATGGCCAACAACA 58.961 50.000 10.96 0.00 43.80 3.33
3226 3864 1.411977 CCAACTCATGGCCAACAACAA 59.588 47.619 10.96 0.00 43.80 2.83
3227 3865 2.037511 CCAACTCATGGCCAACAACAAT 59.962 45.455 10.96 0.00 43.80 2.71
3228 3866 3.257873 CCAACTCATGGCCAACAACAATA 59.742 43.478 10.96 0.00 43.80 1.90
3229 3867 4.081531 CCAACTCATGGCCAACAACAATAT 60.082 41.667 10.96 0.00 43.80 1.28
3230 3868 5.126869 CCAACTCATGGCCAACAACAATATA 59.873 40.000 10.96 0.00 43.80 0.86
3231 3869 6.183360 CCAACTCATGGCCAACAACAATATAT 60.183 38.462 10.96 0.00 43.80 0.86
3232 3870 6.395426 ACTCATGGCCAACAACAATATATG 57.605 37.500 10.96 0.00 0.00 1.78
3233 3871 5.302568 ACTCATGGCCAACAACAATATATGG 59.697 40.000 10.96 0.00 0.00 2.74
3234 3872 4.588106 TCATGGCCAACAACAATATATGGG 59.412 41.667 10.96 0.00 0.00 4.00
3235 3873 4.256983 TGGCCAACAACAATATATGGGA 57.743 40.909 0.61 0.00 0.00 4.37
3236 3874 3.957497 TGGCCAACAACAATATATGGGAC 59.043 43.478 0.61 0.00 0.00 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 105 1.003355 ACATCACAGTTGCCCCGAG 60.003 57.895 0.00 0.00 0.00 4.63
178 180 5.602628 GCCGACTCTTAATAAACCATCTCT 58.397 41.667 0.00 0.00 0.00 3.10
185 187 4.208666 GGACATCGCCGACTCTTAATAAAC 59.791 45.833 0.00 0.00 0.00 2.01
334 817 4.592997 ATCTAGCCCTTGCCTAAAAAGT 57.407 40.909 0.00 0.00 38.69 2.66
371 861 6.620877 TGAGAGAGGTGTATTATGGTTTGT 57.379 37.500 0.00 0.00 0.00 2.83
410 900 2.289882 TGGATCCAACTCTCAACTGCAG 60.290 50.000 13.46 13.48 0.00 4.41
441 931 1.531365 CAGGTTTGGCTTGGGCAGA 60.531 57.895 0.00 0.00 39.75 4.26
455 945 4.019051 TCATTGAAGACATGTGATCCAGGT 60.019 41.667 1.15 1.85 41.63 4.00
458 948 4.397103 GCTTCATTGAAGACATGTGATCCA 59.603 41.667 26.72 0.00 41.71 3.41
558 1048 7.801315 TGTAATTAAGTGCGACTGATTTGTTTC 59.199 33.333 0.00 0.00 0.00 2.78
560 1050 7.197071 TGTAATTAAGTGCGACTGATTTGTT 57.803 32.000 0.00 0.00 0.00 2.83
561 1051 6.795098 TGTAATTAAGTGCGACTGATTTGT 57.205 33.333 0.00 0.00 0.00 2.83
562 1052 7.075121 TGTTGTAATTAAGTGCGACTGATTTG 58.925 34.615 11.79 0.00 0.00 2.32
571 1061 6.582295 AGCTCATTTTGTTGTAATTAAGTGCG 59.418 34.615 0.00 0.00 0.00 5.34
701 1197 6.707273 TTGTCCCCCTAAAACTTATGTAGT 57.293 37.500 0.00 0.00 39.32 2.73
702 1198 8.589701 AATTTGTCCCCCTAAAACTTATGTAG 57.410 34.615 0.00 0.00 0.00 2.74
717 1213 4.953579 TGATGGCTACTTTAATTTGTCCCC 59.046 41.667 0.00 0.00 0.00 4.81
828 1324 8.080083 ACCTCACGTACTGTATAAAGTTTTTG 57.920 34.615 0.00 0.00 0.00 2.44
872 1382 7.272037 AGTTTAAACTTGTATTCACCCACAG 57.728 36.000 15.22 0.00 35.21 3.66
877 1387 8.456471 GGATGGTAGTTTAAACTTGTATTCACC 58.544 37.037 25.07 22.24 40.37 4.02
941 1451 1.109609 GTCTCCCCCGTAATTCTCGT 58.890 55.000 3.09 0.00 0.00 4.18
1122 1639 5.338381 CGGAGAGAGAGGAGATCTATAAGCT 60.338 48.000 0.00 0.00 38.84 3.74
1176 1693 1.901085 CTAGGTGCCTGGACTGGAC 59.099 63.158 0.00 0.00 0.00 4.02
1177 1695 1.990060 GCTAGGTGCCTGGACTGGA 60.990 63.158 5.75 0.00 35.15 3.86
1536 2060 0.036022 AGAGGCTGAGCTTGTTGACC 59.964 55.000 3.72 0.00 0.00 4.02
1945 2469 0.036875 CCCTTCTTCTTTGCCGGAGT 59.963 55.000 5.05 0.00 0.00 3.85
1947 2471 0.324943 CTCCCTTCTTCTTTGCCGGA 59.675 55.000 5.05 0.00 0.00 5.14
1953 2477 3.392616 TGAGCTTGACTCCCTTCTTCTTT 59.607 43.478 0.00 0.00 45.61 2.52
1965 2489 2.049063 GCGACGGTGAGCTTGACT 60.049 61.111 0.00 0.00 0.00 3.41
1968 2492 2.664851 TTGGCGACGGTGAGCTTG 60.665 61.111 0.00 0.00 0.00 4.01
2252 2787 7.063544 CCCGCCAAATTTCGTAAAATTCAAATA 59.936 33.333 0.00 0.00 42.82 1.40
2282 2823 1.768077 CATCACTCCTCCCCTCCCC 60.768 68.421 0.00 0.00 0.00 4.81
2286 2827 0.326048 CCTCACATCACTCCTCCCCT 60.326 60.000 0.00 0.00 0.00 4.79
2287 2828 0.618968 ACCTCACATCACTCCTCCCC 60.619 60.000 0.00 0.00 0.00 4.81
2288 2829 1.280457 AACCTCACATCACTCCTCCC 58.720 55.000 0.00 0.00 0.00 4.30
2289 2830 2.303022 TCAAACCTCACATCACTCCTCC 59.697 50.000 0.00 0.00 0.00 4.30
2531 3079 6.261158 TGTCCGTCAAGATTACAAAAACATGA 59.739 34.615 0.00 0.00 0.00 3.07
2536 3095 6.687081 AACTGTCCGTCAAGATTACAAAAA 57.313 33.333 0.00 0.00 0.00 1.94
2544 3103 6.092259 GCTATTACAAAACTGTCCGTCAAGAT 59.908 38.462 0.00 0.00 0.00 2.40
2569 3128 6.959871 GCGAATTCTCTGCATAATCATACATG 59.040 38.462 3.52 0.00 0.00 3.21
2589 3151 6.559521 CGTTTTCAAGAAAAATTCACGCGAAT 60.560 34.615 15.93 0.00 43.94 3.34
2591 3153 4.203361 CGTTTTCAAGAAAAATTCACGCGA 59.797 37.500 15.93 0.00 41.37 5.87
2653 3215 3.710326 ACTTCGGCAAAAAGAAACCTC 57.290 42.857 0.00 0.00 0.00 3.85
2711 3325 1.076332 GTAATTCAACACCGCTCGCT 58.924 50.000 0.00 0.00 0.00 4.93
2766 3382 2.034879 CGGCGCAAATCCTCACAGT 61.035 57.895 10.83 0.00 0.00 3.55
2767 3383 2.034879 ACGGCGCAAATCCTCACAG 61.035 57.895 10.83 0.00 0.00 3.66
2791 3407 2.603075 TTTGCCCTCCAACAGCTTAT 57.397 45.000 0.00 0.00 31.97 1.73
2792 3408 2.238521 CTTTTGCCCTCCAACAGCTTA 58.761 47.619 0.00 0.00 31.97 3.09
2802 3418 0.811281 CGAATGACCCTTTTGCCCTC 59.189 55.000 0.00 0.00 0.00 4.30
2833 3449 1.516110 ATCCTCACAGCTTATGCCCT 58.484 50.000 0.00 0.00 40.80 5.19
2836 3452 3.733077 GCACAAATCCTCACAGCTTATGC 60.733 47.826 0.00 0.00 40.05 3.14
2837 3453 3.441222 TGCACAAATCCTCACAGCTTATG 59.559 43.478 0.00 0.00 0.00 1.90
2838 3454 3.441572 GTGCACAAATCCTCACAGCTTAT 59.558 43.478 13.17 0.00 0.00 1.73
2840 3456 1.610522 GTGCACAAATCCTCACAGCTT 59.389 47.619 13.17 0.00 0.00 3.74
2841 3457 1.242076 GTGCACAAATCCTCACAGCT 58.758 50.000 13.17 0.00 0.00 4.24
2842 3458 0.110056 CGTGCACAAATCCTCACAGC 60.110 55.000 18.64 0.00 0.00 4.40
2843 3459 1.511850 TCGTGCACAAATCCTCACAG 58.488 50.000 18.64 0.00 0.00 3.66
2848 3464 2.019249 CCATCATCGTGCACAAATCCT 58.981 47.619 18.64 0.00 0.00 3.24
2849 3465 1.066002 CCCATCATCGTGCACAAATCC 59.934 52.381 18.64 0.00 0.00 3.01
2850 3466 1.066002 CCCCATCATCGTGCACAAATC 59.934 52.381 18.64 0.00 0.00 2.17
2852 3468 0.964860 CCCCCATCATCGTGCACAAA 60.965 55.000 18.64 4.30 0.00 2.83
2853 3469 1.378382 CCCCCATCATCGTGCACAA 60.378 57.895 18.64 0.00 0.00 3.33
2854 3470 2.271821 CCCCCATCATCGTGCACA 59.728 61.111 18.64 4.45 0.00 4.57
2855 3471 1.819632 GACCCCCATCATCGTGCAC 60.820 63.158 6.82 6.82 0.00 4.57
2856 3472 2.589540 GACCCCCATCATCGTGCA 59.410 61.111 0.00 0.00 0.00 4.57
2956 3572 5.106277 CGTAAATTTCCTCCTCCTTTTCCAC 60.106 44.000 0.00 0.00 0.00 4.02
3084 3700 2.976882 AGTACCAACCTTAGCACTGGAA 59.023 45.455 0.00 0.00 32.97 3.53
3088 3704 5.484290 AGAACATAGTACCAACCTTAGCACT 59.516 40.000 0.00 0.00 0.00 4.40
3096 3712 6.532988 AAGAGAGAGAACATAGTACCAACC 57.467 41.667 0.00 0.00 0.00 3.77
3158 3796 9.964354 TCAACCATGTACTACTACTAACTCTTA 57.036 33.333 0.00 0.00 0.00 2.10
3160 3798 8.874744 TTCAACCATGTACTACTACTAACTCT 57.125 34.615 0.00 0.00 0.00 3.24
3161 3799 8.954350 TCTTCAACCATGTACTACTACTAACTC 58.046 37.037 0.00 0.00 0.00 3.01
3162 3800 8.874744 TCTTCAACCATGTACTACTACTAACT 57.125 34.615 0.00 0.00 0.00 2.24
3163 3801 9.570488 CTTCTTCAACCATGTACTACTACTAAC 57.430 37.037 0.00 0.00 0.00 2.34
3164 3802 9.524496 TCTTCTTCAACCATGTACTACTACTAA 57.476 33.333 0.00 0.00 0.00 2.24
3165 3803 9.524496 TTCTTCTTCAACCATGTACTACTACTA 57.476 33.333 0.00 0.00 0.00 1.82
3166 3804 8.418597 TTCTTCTTCAACCATGTACTACTACT 57.581 34.615 0.00 0.00 0.00 2.57
3167 3805 7.760340 CCTTCTTCTTCAACCATGTACTACTAC 59.240 40.741 0.00 0.00 0.00 2.73
3173 3811 4.906618 TCCCTTCTTCTTCAACCATGTAC 58.093 43.478 0.00 0.00 0.00 2.90
3207 3845 2.886862 TTGTTGTTGGCCATGAGTTG 57.113 45.000 6.09 0.00 0.00 3.16
3208 3846 6.183360 CCATATATTGTTGTTGGCCATGAGTT 60.183 38.462 6.09 0.00 0.00 3.01
3209 3847 5.302568 CCATATATTGTTGTTGGCCATGAGT 59.697 40.000 6.09 0.00 0.00 3.41
3210 3848 5.279106 CCCATATATTGTTGTTGGCCATGAG 60.279 44.000 6.09 0.00 0.00 2.90
3211 3849 4.588106 CCCATATATTGTTGTTGGCCATGA 59.412 41.667 6.09 0.00 0.00 3.07
3212 3850 4.588106 TCCCATATATTGTTGTTGGCCATG 59.412 41.667 6.09 0.00 0.00 3.66
3213 3851 4.588528 GTCCCATATATTGTTGTTGGCCAT 59.411 41.667 6.09 0.00 0.00 4.40
3214 3852 3.957497 GTCCCATATATTGTTGTTGGCCA 59.043 43.478 0.00 0.00 0.00 5.36
3215 3853 3.957497 TGTCCCATATATTGTTGTTGGCC 59.043 43.478 0.00 0.00 0.00 5.36
3216 3854 5.590530 TTGTCCCATATATTGTTGTTGGC 57.409 39.130 0.00 0.00 0.00 4.52
3217 3855 5.984926 GCATTGTCCCATATATTGTTGTTGG 59.015 40.000 0.00 0.00 0.00 3.77
3218 3856 6.808829 AGCATTGTCCCATATATTGTTGTTG 58.191 36.000 0.00 0.00 0.00 3.33
3219 3857 7.267128 CAAGCATTGTCCCATATATTGTTGTT 58.733 34.615 0.00 0.00 42.34 2.83
3220 3858 6.808829 CAAGCATTGTCCCATATATTGTTGT 58.191 36.000 0.00 0.00 42.34 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.