>input_sequence_56523
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---------------------------------------------------------------------AGCAGCTAGCT
CAGCAGCAG-------CAGCGGTAGCAAATGATTTGGTGAGGACGAACCATCCGTAAGGTGACCCGTCCCTTTTCCCTTA
CCTCACCTCACCTTCTCCTCCGCGTCTTCCTTCCTCTCAGCTTATAGATCTCCTCTCTCTCCGAGGACTCGCTCAGCAAG
CGCACGGCCGGAG-TCCAGTCCAGGCACCTAGCTACCGCCGCGCCGCGCCAAGAG---CCACCTCGTCCCCGGCTAGCGC
GCGGCAATGTCTTCCAACGGCAAGCCCAACCCGCAGCCCCCCGCCGCC---GCCGCGGCCACCAACGGCGCGGGCGCGGG
CGGGCCGCCCAAGATGTACCAGCGCCCCATCTACCGCCCGCAGGGCCCCGCCAAGGGCCGCCGCGGGGGCCGCTCCTCCT
GCCGCTTCAGCTGCTGCTGCTGCTTCTTCTGGGCCGTGCTCGTCGTGCTCCTCCTCGCCCTCGTCGCCGCCGTCGCCGGC
GGCGGCTTCTACCTCCTCTACCGCCCCCACCGCCCGGCCTTCACCCTCTCCGTCGCGCGGGTCAACAAGCTCAGCCTCTC
CAGCTCCGCCACGGCGCCCGCGCTCACCGACTCCATCGACTTCACGCTCACCGCCAAGAACCCCAACAAGAAGCTCGTCT
ACCTGTACGACGACTTCACCGTCACCGCCGCCACGGCCGCCAACGCCGTGCCGCTCGGGGAGGCGACCGTGCCGGGGTTC
CTGCACGAGGCCAACAACATCACCGTCATCAAGGCCACCGTCACCGCGGCCGCGCTCGGGGTCGACCCCACCGCCGCCAG
CTCCGACATCAAGAAGTCGGGCACCTTCGCCATCACCCTCGACCTGGAGACCAAGGCCGGCGTCAAGGTGGGCGGGCTCA
AGACCAAGAAGATCGGCATCCAGGTGCACTGCGACGGCATCAAGGTGGCCGCGCCGGCCCCGGCACCCACTCCGGCAAAG
AAGAAGGGAGTCAAGCTCACCGTCGCCAAGGCGCCGTCGAAGGCGCCGTCCGCCGTGGAGGCCCCGGAGCCGTCCGCGGC
CGTCGACGACGCGACAACCTCGCCCCCGGCGGCGACCACCGTCGCGCGCGTGTGCCAGGTCAGGATCCGAGTCAAGATCT
GGAAGTGGACCTTCTAGTGACGACGCAAACTCCCAGGGGGCACATTGCGAAAGCGAACCAAAGCCACTTTACTTTTCACC
TGGGACGCGGCGGT-----------AGTAGAGATCACAACCGACGGTTGCTGTAAAAAA---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------
>chr3D_1_TraesCS3D01G106800
TGGCCATGGCCGGGACGATGAGAAACTAAAGAAAACTTTCGCCAAATTCTCGCCAGAGACGGTGGGGGAGGGAGGCGGGA
TTACGGGACATGGGCGGTGGTGGGCTCGGGGCAACTGTGATGTGGGCAATGTCAAGGAGAGACAACTCGTGTGCGGAAGA
AAGGAAGAGAGAGAGG-GGAGAGATGGTTTATTAAGAGTCGGCGATGTCCGACTATATTTGAGTAGGAGAGGTGGGTTTA
AATAGGTTCCGCTCAATTTTTTGAGGGATTAAAGGTTTTGGGGAAGTGCTAGGTGAAGCTTAATT---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------CCTCAAACCGAT
ATTCT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---TTAGGGAATTATAACTTTTTAGGCAAGGGCTAGATATGCTCC-------AACTATATACAAACCATAATACACCTCT
CTCATAAAATAAAATCAACCTGCAGTTGAGAGTTGGATCCAAGATCGACCTCTGCCCAAGCCAAACCTGGATCACATGTC
TTCAATGAAGCAGCAGCATAAAAGTGTAACACACCCCCGGCCGGTCCCAATGTTCACAAATGCTACTGCCACCGTTCGTT
CAAAAAAGAAACAAATCAGTCGCACTTAATTACAACAAAATGAGCTTGT---TATTAAATCTCTGACGCTTTGC---TAG
TAAATTTTGAGCAGGGAATTGCAGCTCTGGCTCAAGGTATTGGCTCGCTGAAACACAATTACTCCTAGCCCGTTGTACTA
CATAAGTTTTAGGGGGACAAATTAAAGTAGCCATCACTACAAACTTTAGTACTCCACCACTGCTACGGCGCAAGGAGTAA
TTTAGCAGTTCGTGCCAGTACCAGGCTCAGTTTGCAGCTCATTCAAAAACTTTATAC--------------AGTACGTGA
GGTAGAATTTTTTGAATTTTTCTGTGGGTGAATACAAGTTTAAACTACCATCCAAATGATTTTCCCGGGAGAAAAACCAA
CTTGGCACGAACGAGAATTACGGGGGAGACTTGCTTAATAAAAAAGGCAAAGGAAAGGCAGCAGCAGGCAGCAGCTAGCT
CAGCAGCAG-------CAGCGGTAGCAAATGATTTGGTGAGGACGAACCATCCGTAAGGTGACCCGTCCCTTTTCCCTTA
CCTCACCTCACCTTCTCCTCCGCGTCTTCCTTCCTCTCAGCTTATAGATCTCCTCTCTCTCCGAGGACTCGCTCAGCAAG
CGCACGGCCGGAG-TCCAGTCCAGGCACCTAGCTACCGCCGCGCCGCGCCAAGAG---CCACCTCGTCCCCGGCTAGCGC
GCGGCAATGTCTTCCAACGGCAAGCCCAACCCGCAGCCCCCCGCCGCC---GCCGCGGCCACCAACGGCGCGGGCGCGGG
CGGGCCGCCCAAGATGTACCAGCGCCCCATCTACCGCCCGCAGGGCCCCGCCAAGGGCCGCCGCGGGGGCCGCTCCTCCT
GCCGCTTCAGCTGCTGCTGCTGCTTCTTCTGGGCCGTGCTCGTCGTGCTCCTCCTCGCCCTCGTCGCCGCCGTCGCCGGC
GGCGGCTTCTACCTCCTCTACCGCCCCCACCGCCCGGCCTTCACCCTCTCCGTCGCGCGGGTCAACAAGCTCAGCCTCTC
CAGCTCCGCCACGGCGCCCGCGCTCACCGACTCCATCGACTTCACGCTCACCGCCAAGAACCCCAACAAGAAGCTCGTCT
ACCTGTACGACGACTTCACCGTCACCGCCGCCACGGCCGCCAACGCCGTGCCGCTCGGGGAGGCGACCGTGCCGGGGTTC
CTGCACGAGGCCAACAACATCACCGTCATCAAGGCCACCGTCACCGCGGCCGCGCTCGGGGTCGACCCCACCGCCGCCAG
CTCCGACATCAAGAAGTCGGGCACCTTCGCCATCACCCTCGACCTGGAGACCAAGGCCGGCGTCAAGGTGGGCGGGCTCA
AGACCAAGAAGATCGGCATCCAGGTGCACTGCGACGGCATCAAGGTGGCCGCGCCGGCCCCGGCACCCACTCCGGCAAAG
AAGAAGGGAGTCAAGCTCACCGTCGCCAAGGCGCCGTCGAAGGCGCCGTCCGCCGTGGAGGCCCCGGAGCCGTCCGCGGC
CGTCGACGACGCGACAACCTCGCCCCCGGCGGCGACCACCGTCGCGCGCGTGTGCCAGGTCAGGATCCGAGTCAAGATCT
GGAAGTGGACCTTCTAGTGACGACGCAAACTCCCAGGGGGCACATTGCGAAAGCGAACCAAAGCCACTTTACTTTTCACC
TGGGACGCGGCGGT-----------AGTAGAGATCACAACCGACGGTTGCTGTAAAAAAAAAATCCTATTTGAATTTTAC
GAAATTTGGCGGGTGG------GGGGAGGGGAGGAGTGATGTGAGGTTTGAGGTATTTGTTTATTATTTTTCCT--TTTT
TTTACGTTTCT-TTTTTT-TTGCGTTACCTTATTTTTTGCTAGTGCAAGTACACCTTGGGGATTGTTCTGCTTAACTTTG
TACGAC---TACATATCTATCTGAATTTGTAACTGCTTCTTCTTTTGTCGGGGGGAATTTGTAATTGTTAGTGGCATGTA
TTACTAATGTACTGTCAAACTATACTCTCCTTTATTTTT-----------CATGTTTTTGTAATCTTGACGGACAGTTTT
GTAATAGCATG---TATGATTATGCAGAGAATTCGCGTGAATTTTTCTTGAAAACGAGTATACATCCCTTGCTTAGGAAT
ATATTCTGGAGCCCGAGGTTTCTTTTTGCCGAAGTACAGT----------------------------------------
------------AGTACAGTACTGATTTTGTACGCCAGAGGAAAAGCGAGCGGTGTTGAATTACAGGAAGTGCGGAGTTC
TGAA--AAAAGAAATGAACAAACTGTGAGGATTTGCGCCGTGAGGCATAAGCTGTTGGAGGGCAAAAGGGTCATTCGTTA
TAAAAAAAAGGGCATAAGCTGTGAGGATTTGTGCACGATGATGGGGGTCGTTTACCGGGATCGGTGAGGGCTTAGTTTAA
AGGTCAACACAAATCATTAAAGCGCGCTGCATCTTTTCCCAACACGCGACCGTGGAAAAGGAGGAGGAAATTTACGTCCC
GTACTCGCGAGATGTGTTAAACAGTAGACGCCACCGCTATTGTTAAAAGCTGGGTGACCGTGCAGCCATGAAGAAGCATC
TTTGGTCTGCAGTCTAATCTTCCAGTGCTAAGGTTGGTA----------------------CTATGTTCTCTCTCTTTTT
TAATATCAAATCCGTTCTTTATTAACTTGTGATAGTAAGAGTTAGTAGTAGTACATGGTTGAAGAAGAAGGGAGCTACTA
TAGCCAACTCATGGCCAACAACAATATATGGGACAATGCTTG
>chr3B_1
TGGCCATGGCCGGGACGATGAGAAACTGAAGAAAACTTTCGCCGAATTCTCGCCAGAGATGGTGAGGGAGGGAGGCGGGA
CTGCGGGACACGGGCGGCGGTGGGGCCGGGGCAACTGTGATGTGGGCAATGTCAACGAGAGACAACTCGTGTGCGGAAGA
AAACAAGAGAGAGAGGGGGGGAGATGATTTATTAAGAGCCGGCGATGTCCGACTATATTTGAGTAGGAGAGGTGGGTTTA
AATAGGTTCCGCTCAATTTTTTGAGGGATTAAAGGTTTTGAGGAAGTGCTAGGTGAAGCTTAATT---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------CCTCAAACCGAT
ATTCT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---TTAGGGAATTATAGCTTTTTAGGCAAGGGCCGGATATGCTCTAGCCTCTAACTACATTCAAACAATAATACACCTCT
CTCATAAAATAAAATCAAGTTGCAGTTGAGAGTTGGATCCAAGATCGACCCCTGCCCAAGCCAAGCCCGGATCACATGTC
TTCAATGAAGCAGCAGCATAAAAGTGTAACACACCCCCGGCGGGTCCCAATGTTCACAAATGCTACTGCTACCGTTCGTT
CAAAAAAA----AAATCAGTTGCACTTAATTACAACAAAATGAGCTTGTTACTATTAAATCTCTGACGCTTTGCTAGTAG
TAAATTTTGAGCAGGGAATTGCAGCTCTGGCTCAAAGTATTGGCTCGCTGAAACACAATTACTCCTAGCCTGTTGT---A
CATAAGTTTTAGAGGGACAAATTAAAGTAGCCATCACTACTAGCTTTAGT--------ACTGCTACAGCTCAAGGAGTAA
ATTAGCAGTTCGTGCCATTGCCAGGCTCGGTTTGCAGCTCATTTGAAATATTTAAAAAACTTCA---------TACGTGA
AATATAAGTTTGTGGGAAAA----TGTGTGAATACAAGTTCAAATTACCATCCACGTAATTTTCCCGGGAGAAAAACTAA
CTTGCCACAAGCGAGAATTACGGAGGCGACTTGCTTAATAAAAAAGGCAGAGGAAAGTGAGCG-------TCAGCTAGCT
CAGCAGCAGCAGCCAGCAGCGGTAGCAAATGATTTGGTGAGGACGAACCATCCGTAAGGTGACCCGTCCCTTTTCCCTTA
CCTCACCTCACCTTCTCCTCCGCGTCTTCCTTCCTCTCGGCTTATAGATCTCCTCTCTCTCCGAGGACTCGCTCAGCAAG
CGCACGGCCGGAA-CCCAGTCCAAGCACAGCTAGCCA---GCGCCGCGCCAAGAG---CCACCTCGTCCCCGGCCAGCGC
GCGGCAATGTCTTCCAACGGCAAGCCCAATCCGCAGCCCCCCGCCGCC---GCCGCGGCCACCAACGGCGCGGGCGCGGG
CGGGCCGCCCAAGATGTACCAGCGCCCCATCTACCGCCCGCAGGGTCCCGCCAAGGGCCGCCGCGGGGGCCGCTCCTCCT
GCCGCTTCAGCTGCTGCTGCTGCTTCTTCTGGGCCGTGCTCGTCGTGCTCCTCCTGGCCCTCGTCGCCGCCGTCGCCGGC
GGCGGCTTCTACCTCCTCTACCGCCCCCACCGCCCGGCCTTCACCCTCTCCGTCGCGCGCGTCAACAAGCTCAGCCTCTC
CAGCTCTGCCACGGCGCCCGCGCTCACCGACTCCATCGACTTCACGCTCACCGCCAAGAACCCCAACAAGAAGCTCGTCT
ACCTGTACGACGACTTCACCGTCACCGCCGCCACGGCCGCCAACGCCGTGCCGCTCGGGGAGGCGACTGTGCCGGGGTTC
TTGCACGAGGCCAACAACATCACCGTCATCAAGGCCACCGTCACCGCGGCCGCGCTCGGGGTCGACCCCACCGCCGCCAG
CTCCGACATCAAGAAGTCGGGCACCTTCGCCATCACTCTCGACCTGGAGACCAAGGCCGGCATCAAGGTGGGCGGGCTCA
AGACCAAGAAGATCGGCATCCAGGTGCACTGCGACGGCATCAAGGTGGCCGCGCCCGCCCCGGCACCCGCGCCGGCGAAG
AAGAAGGGGGTGAAGCTCACCGTCGCCAAGGCGCCGTCGAAGGCGCCAGCCGTCGTGGAGGCCCCGGAGCCGTCCGCGTC
CGTCGACGACGCGACAACCTCGCCCCCGGCGGCGACCACCGTCGCGCGCGTGTGCCAGGTCAGGATCCGAGTCAAGATCT
GGAAGTGGACCTTCTAGTAACGACGCAAACTCCCAGGGGGCACATTGCGAAAGCGAATCAAAGCCACTTTACTTTTCACC
TGGGACGCGGCGGTGGGGCGTACGTAGTAGAGAT--CAACCGACGGTTGCTGTA-AAAAAT-ATCCCATTTGAATTTTAC
GAAATTTGGCGGGGGG------AGGG----GAGGAGTGATGTGAGGTTTGAGGTATTTGTTTATTATTTTTCCTTATTTT
TCTACGTTTCT-TTTTTTGTTGCGTTACCTTATTTTTTGCTAGTGCAATTACAACTTGGGGATTGTTCTGCTTAACTTTG
TACGAC---TACATATCTATCTGAATTTGTAACTGTT--TTTTTTTATCGGGGGGAATTTGTAATTGTTAGTGGCATGTA
TTACTAGTGTACTGTCAAACTATACTCTCCTTTATTTTCATGCTACAGCCCATGG-TTTGTATTCTTGACGGACAGTTTT
GTAATAGTATG---TATGATTATGCAGAGATACCGCGTGATTTTTTCTTGAAAACGATCATAGATCCCTTGCTTAGGAAT
ATATTCTGGTGCCCAAGGTTTCCTTTTGCCCAACTACAGTACTGATTTAACCACTCGGCAAGCGTGGTCAGCCATCTCAT
CTTTAAAAAAAAAGTACAGTACTGATTTTGTACGC------------GAGCGGTGTTGAACTACAGGAAGTGAGAAGTTC
TGAAAAAAAAGAAATGAACAAGTTGTGAGGATTTGCGCCGTGAGGCGGAAGCTGTTGAAGGGCAAAAGAGTCATTCGTTA
TTAAAAAAGGGTTTTCTTTTGTGCTTAA----GCACGATGATGGGGGTCGTTTACCGGGATCGGTGAATGCTTAGTTTAA
AGGTCAACACAAATCATTAAAGCGCGCTGCATCTTTTCCCAACACGCGACCATGGAAAAGGAGGAGGAAATTTACGTGCC
GTACTCACGAGATGTGTCAAACAGTAGACGCCACCGCTATTGTTAAA-GCTGGGTGACCGTGCAGCCATGAAGAAGCATC
TTTGGTCTGCAGTCTAATCATCCGGTGCTAATGGTGGTAGTGGAGTACATTATTACTAGTGCTACGTTCTCTCTCTTTTT
TG-TATCAGATCGCTTCTTTATTAACTTGTGATAAGAGT------TAGTACTACATGGTTTAACAAGAAGGGAGTAC---
------------------------------------------
>chr3A_46
---------------------------------------------ATTCTCACCAGAGACGGTGGGGGAGGGAGGCGGGA
TTGCGGGACATGGGCGGCGGTGAGTTGGGGGCAACAATGATGTAGGCAGCGT-AAGGAGACACAGCTCGTGTGCGTGAGA
AAGGGA--------------GAGATGATTTATTAGGAGTTGGCGATGTCCGGCTATATTTTAGTAGGAGAGGTGGATTTG
AATAGGTTCCGCTCAAATTTTTGATGGATTAAAGGTTTTGGGAAAGTGCTAGGTGAAGCTTAATTGCTCCAGTTTCGCTA
AAGCACATCTAGATGTGCCATAAGTATTGCACATCTAAGTTCAATGTCATTGATCTTACGCGAAGATTAATGTGGGTTCT
TTTTTTATGCTTGATTGAGTCAATTAGATGTGTAATAACTAGAGTACATCTAGATGTGTTCTAGACATCCTCAAACCGAT
TTTCTATTAGACCTCTTCCAATGCAAAGGTGCTTAGATGAGGTGCTAAGTGCATTAAATACCTTAGCAACTCAACACCCC
AATGCATAGGTGCTTAGCTTGTTGTTACTAAGCACACATTATTTAATGAGTTAGCACCTAAAGTCTTTCATGTATTGGTC
AAATTGTTTCATTTAAGTGGTTTGCCTAGGTTTTTGCGCCTAGCATTGGTTTTTCCTGGGATCACCAAAGTATTCTCTCT
CCTCTTTAAATGTAGTGCCATGTCATTTTTTCACTTATGTGGCAATGCTTAGCACCTGTTCACGGTGGAGCATTGGGAGG
GCCTTAGGGAATTATAGCTTTTTGGGCAAGGGCTAGATATGCTCT------TAACTATATTCAAACAATAATACACCTCT
CTCATAAAATAAAATCAACTTGCAGTTGAGAGTTGGATCCAAGACCGACTCCTGCCCAGGCCAAGCCCGGATCACATGTC
TTCAATGAAGCAGCAGCATAAAAGTGTAACACAGCCCCGGCCGGTCCCAATGTTCACAAATGCTACTGCCACCGTTCGTT
CAAAAATAATG---ATCAGATGCACTTAATTACAACAAAATGAGCTTGT---TATTAAATCTCTGACGCTTTGCTAGTA-
--AATTTTGAGCAGGGAATCGCAGCTCCGGCTCAAGGTATTGGCTCGCTGAAACACAATTACTCCTACCCCGTTGT---A
CATAAGTTTTAGAGGGACAAATTAAGGTAGCCATCACTACAAACGTTAGTACTCCACCACTGCTACGGGGCAAGGAGTAA
TTCAGCAGTTCGTGCCAGTACAAGGCTCAGTTTGCAGCTCATTTAAAAACATTTAAAAACTTTTGTACAGTAGTACGTGA
AATGGAAGTTTTTGAATTTTT-TGTGTGTAAATACAAGTTTAAACTGCCATCCAAATGATTTTCCCGGGAGAAAACCCAA
CTTGGCACGAGCGAGAATTACGGGGGCGACTTGCTTAATAAAAAAGGCTAAGGAAAGGTAGCAGCAGGCATCAGCTAGCT
CAGCAGCAGCAGCCAGCAGCGGTAGCAAATGATTTGGTGAGGACGAACCATCCGTAAGGTGACCCGTCCCTTTTCCCTTA
CCTCACCTCACCTTCTCCTCCGCGTCTTCCTTCCTCTCGGCCTATAGATCTCCTCTCTCTCCGAGGACTCGCTCAGCAAG
CGCACGGCCGGAAACCCAGTCCAGGCACCTAGCTACCGCCGCGCCGCGCCAAGAGCCGCCACCTCGTCCCCGGCTAGCGC
GCGGCAATGTCTTCCAACGGCAAGCCCAACCCGCAGCCCCCCGCCGCCGCCGCCGCGGCCACCAACGGCGCGGGCGCGGG
CGGGCCGCCCAAGATGTACCAGCGCCCCATCTACCGCCCGCAGGGCCCCGCAAAGGGCCGCCGCGGGGGCCGCTCCTCCT
GCCGCTTCAGCTGCTGCTGCTGCTTCTTCTGGGCCGTGCTCGTCGTGCTCCTCCTGGCCCTCGTCGCCGCCGTCGCCGGC
GGCGGCTTCTACCTCCTCTACCGCCCCCACCGCCCGGCCTTCACCCTCTCCGTGGCGCGCGTCAACAAGCTCAGCCTCTC
CAGCTCCGCCACGGCGCCCGCGCTCACCGACTCCATCGACTTCACGCTCACCGCCAAGAACCCCAACAAGAAGCTCGTCT
ACCTGTACGACGACTTCACCGTCACCGCCGCCACGGCCGCCAACGCCGTGCCGCTCGGGGAGGCGACCGTGCCGGGGTTC
CTGCACGAGGCCAACAACATCACCGTCATCAAGGCCACCGTCACCGCGGCCGCGCTCGGGGTCGACCCCACCGCCGCCAG
CTCCGACATCAAGAAGTCGGGCACCTTCGCCATCACCCTCGACCTGGAGACCAAGGCCGGCGTCAAGGTGGGCGGGCTCA
AGACCAAGAAGATCGGCATCCAGGTGCACTGCGACGGCATCAAGGTGGCCGCGCCCGCCGCGGCGCCCGCGCCGGCGAAG
AAGAAGGGGGTGAAGCTCACCGTCGCCAAGGCGCCGTCGAAGGCGCCGGCCGCCGTGGAGGCCCCGGAGCCGTCCGCGGC
CGTCGACGACGCGACAACCTCGCCCCCGGCGGCGACCACCGTCGCGCGCGTGTGCCAGGTCAGGATCCGAGTCAAGATCT
GGAAGTGGACCTTCTAGTGACGACGCAAACTCCCAGGGGGCACATTGCGAAAGCGAACCAAAGCCACTTTACTTTTCACC
TGGGACGCGGCGGT-----------AGTAGAGATCACAACCGACGGTTGCTGTAAAAAAAT-ATCCCATTTGAATTTTAC
GAAATTTGGCGGGGGGGAGGGGAGGG----GAGGAGTGATGTGAGGTTTGAGGTATTTGTTTATTATTTCTCCT--TATT
TTTCTACGTTTCTTTTTT-TTGCGTCACCTTATTTTTTGCTAGTGCAAGTACACCTTGGGGATTGTTCCGCTTAACTTTG
TACGACTATTACATATCTATCTGAATTTGTAACTGTT--TTTTTTTGTCGGAGGGAATTTGTAATCGTTAGTGGCATGTA
TTACTAATGTACTGTCAAACTATACTCTCCTTTATTTTCATGTTACAGCCCATGGTTTTGTATTCCTGACGGACAGTTTT
GTAATAGTATGGAGTATGATTATGCAGAGATTACGCGTGAATTTTTCTTAAAAATGATCATACATCCCTTGCTTAGGAAT
ATATTCTGGAGCCCAAGGTTTCTTTTTGCCGAAGTACAGT----------------------------------------
------------AGTACAGTACTAATTTTGTACGCCAGAGGAAAGGCGAGCGCTGTAGAATTACAGGAAGTGAGGAGTTC
TGAACAGAAAGAAATGTACAAGTTCTGAGGATTTGCGCCGTGAGGCTGAAGCTGTTGAAGGGCAAAAGGGTCATTCGCTG
TTAAAAAAGGGTTTTCTTTTGTGCTTAA----GCACGATGATGGGGGTCGTTTACCGGGATCGGTGAGGGCTTAGTTTAA
AGGTCAACACAAATCATTAAAGCACGCCGCATCTTTTCCCAACACGCGACCCTGGAAAAGGAGGAGGAAATTTACATCCC
GTACTCGCGAGATGTGTTAAACAGTAGACGCCACCGCTATTGTTAAAAGCTGGGCGAGCGTGCAACAATGAAGAAGCATC
TTTGGTCCGCAGTCTAATCATCCGGTTCTAATGGTGGTA-----------------------------------------
--------------------------------------------------------------------------------
------------------------------------------
>chr1D_1329
--------------------------------------------------------------------------------
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-----------AGATGTATCAGCGCCCCATCTACCGGCCGCAGGGGCAGGCGAAGAGCAGGCGCGGGCGG------TCCT
GCCGGTGCAGCTTCTGCTGCTGCTTCTGCTGGGCACTGCTGGTGGTCATCCTCCTCGCGCTAGTCGCCGCGGCCGCGGGC
GGCGCCTTCTACCTGCTCTACCGCCCGCAACGCCCCAGCTTCACCGTCTCCTCTGTCCGCCTCAGCACGTTCAACCTCTC
CTCCTCCACCACCGCGCCCGTCCTCACCGACTCCATCCGGCTCACCGTCACCGCCAAGAACCCCAACAAGAAGCTCGTCT
ATTTCTACGACGACTTCTCCTTCTCGGCCGCCACCGCCGCCAACGCAGTCCCGCTCGGGGACGCCACCGTGCCCGGGTTC
GCGCATGAAGCCGGCAACACCACCGTTTTCACTGCCACCATCACCGCCGCTGGTGTCACCGTAGATCCCAGCAGCGCCGG
CTCTGACCTTAAGAAGTCCGGTGCTTTCTCCGTCGCTATAGATGCCGACACGCGGGCCGGCGTCAAGGTCGGCAGCCTCA
AGACAAAGAAGATGGGCATCCAGGTGCACTGCGAGGGCATCAAGGTG---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------
>chr1A_1329
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------AGATGTACCAGCGCCCCATCTACAGGCCGCAGGGGCAGGCGAAGAGCAGGCGCGGGCGG------TCCT
GCCGGTGCAGCTTGTGCTGCTGCTTCTGCTGGGCACTGCTGGTGGTCGTCCTCCTCGCGCTAGTCGCCGCGGCCGCGGGC
GGCGCCTTCTACGTGCTCTACCGGCCGCAACGCCCCAGCTTCACCGTCTCCTCTGTCCGCCTCAGCACGTTCAACCTCTC
CTCCTCCACCACCGCGCCCGTCCTCACCGACTCCATCCAGCTCACCGTCACCGCCAAGAACCCCAACAAGAAGCTCGTCT
ATTTCTACGACGACTTCTCATTCTCGGCCGCCACCGCCGCCAACGCAGTCCCGCTCGGGGACGCCACCGTGCCCGGGTTC
GCGCATGATGCCGGCAACACCACCGTTTTCACTGCGACCATCACCGCCGCTGGTGTCACCGTAGACCCCAGCGGCGCCGG
CTCTGACCTTAAGATGTCCGGCGCTTTCTCCGTCGCTATAGATGCCGACACGCGGGCCGGCGTCAAGGTCGGCAGCCTCA
AGACCAAGAAGATGGGCATCCAGGTGCACTGCGAGGGCATCAAGGTG---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------
>SNPs
---------------------------S---------------S------------------------------------
--S--------------S------S-------------------------------------------------------
-------------------S------S-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------S---------------------------S---------------S-----S-------------
-------------------S------------------------------S-------------S--S------------
--------------------------------------------------------------------------------
-------S-SSS--------S-----------------------------------------------------------
----------------------------------------------------------------------------SSS-
------------S-------------------------------------------------------------------
-------------------------------------------S----------S-S-----------------------
SS-----S-------------S----S-----------------------------------------------------
----------S---------------S-------------------------------S-----------S---------
--------------------------------------------------------------------------------
--------------------------------------S-----------------------------------------
------------S-S-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------S--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------S------------S-S-----S---
--------S--S------------------------------------S-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------SS----S-------------
-------------S--------S---SSSS--------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------S-SS--S--------------------------------------
--------------------------------------S---------------S-------S-----------------
-------S----------------------S-S------------------------SS---------------------
--------------S-----------------------------------------------------------------
--------------------------------------------S---------------------------S-------
---------------------SS-----------------------SS---------S----------------------
-S------S--SSS-SSSS----SSS-SSSSS------------------------------------------------
---------------------------------------------------S----------------------------
--------------------------------------------------------------------------------
-------------------S---S-------S-S------------------------------S---------------
-SS-----S---SS--------------------SS-SSSSSSSS-----S---------S--S----------SSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1467
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------CGAACGAGAATTACGGGGGA-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------
>reverse_2469
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------ACTCCGGCAAAG
AAGAAGGG------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------
>forward_1639
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------CCGCGTCTTCCTTCCTCTCA-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------
>reverse_3458
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------GCTGTGAGGATTTGTGCACG-------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------
