Multiple sequence alignment - TraesCS3D01G104600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G104600 chr3D 100.000 3349 0 0 555 3903 57163019 57159671 0.000000e+00 6185.0
1 TraesCS3D01G104600 chr3D 100.000 341 0 0 1 341 57163573 57163233 7.120000e-177 630.0
2 TraesCS3D01G104600 chr3D 81.295 139 21 5 5 142 57163423 57163289 1.480000e-19 108.0
3 TraesCS3D01G104600 chr3D 81.295 139 21 5 151 285 57163569 57163432 1.480000e-19 108.0
4 TraesCS3D01G104600 chr3D 83.871 93 14 1 145 237 3153433 3153342 1.930000e-13 87.9
5 TraesCS3D01G104600 chr3D 80.952 105 19 1 12 115 3153421 3153317 8.990000e-12 82.4
6 TraesCS3D01G104600 chr3D 97.500 40 0 1 3423 3461 57160101 57160062 2.520000e-07 67.6
7 TraesCS3D01G104600 chr3D 97.500 40 0 1 3473 3512 57160151 57160113 2.520000e-07 67.6
8 TraesCS3D01G104600 chr3B 91.620 2148 131 21 1152 3269 90119354 90117226 0.000000e+00 2924.0
9 TraesCS3D01G104600 chr3B 91.076 381 26 3 3456 3835 90116871 90116498 3.480000e-140 508.0
10 TraesCS3D01G104600 chr3B 82.984 429 30 16 562 978 90148822 90148425 8.030000e-92 348.0
11 TraesCS3D01G104600 chr3B 91.367 139 12 0 1073 1211 90148425 90148287 1.430000e-44 191.0
12 TraesCS3D01G104600 chr3B 83.333 210 15 10 948 1157 90124758 90124569 4.010000e-40 176.0
13 TraesCS3D01G104600 chr3B 97.500 40 0 1 3423 3461 90116854 90116815 2.520000e-07 67.6
14 TraesCS3D01G104600 chr3A 92.019 1917 95 25 1213 3091 66228998 66227102 0.000000e+00 2639.0
15 TraesCS3D01G104600 chr3A 94.690 339 16 2 3465 3803 66226558 66226222 3.450000e-145 525.0
16 TraesCS3D01G104600 chr3A 87.414 437 36 7 767 1198 66229477 66229055 5.860000e-133 484.0
17 TraesCS3D01G104600 chr3A 87.069 348 27 10 2 335 515721551 515721208 1.020000e-100 377.0
18 TraesCS3D01G104600 chr3A 93.750 80 5 0 3350 3429 66226957 66226878 1.900000e-23 121.0
19 TraesCS3D01G104600 chr3A 82.353 119 19 2 151 268 515721548 515721431 6.900000e-18 102.0
20 TraesCS3D01G104600 chr4A 90.855 339 26 3 3 340 677119732 677120066 2.140000e-122 449.0
21 TraesCS3D01G104600 chr4B 87.870 338 39 1 3 340 50263247 50263582 2.830000e-106 396.0
22 TraesCS3D01G104600 chr2D 87.572 346 35 4 2 340 299558416 299558072 1.020000e-105 394.0
23 TraesCS3D01G104600 chr2D 96.512 86 3 0 3266 3351 556926428 556926513 4.070000e-30 143.0
24 TraesCS3D01G104600 chr2D 91.919 99 7 1 3263 3360 128890728 128890630 1.890000e-28 137.0
25 TraesCS3D01G104600 chr5A 86.667 345 40 2 2 340 480121253 480120909 1.020000e-100 377.0
26 TraesCS3D01G104600 chr5B 83.526 346 37 11 3 341 541161279 541160947 4.900000e-79 305.0
27 TraesCS3D01G104600 chr6A 95.604 91 4 0 3264 3354 584511359 584511449 3.140000e-31 147.0
28 TraesCS3D01G104600 chr6A 80.189 106 19 2 12 115 578557691 578557796 1.160000e-10 78.7
29 TraesCS3D01G104600 chr6A 97.674 43 1 0 10 52 574745207 574745165 1.500000e-09 75.0
30 TraesCS3D01G104600 chr6B 95.556 90 4 0 3267 3356 13827610 13827521 1.130000e-30 145.0
31 TraesCS3D01G104600 chr2B 91.509 106 7 2 3262 3366 790113031 790112927 1.130000e-30 145.0
32 TraesCS3D01G104600 chr2B 89.623 106 10 1 3265 3370 264112805 264112909 2.450000e-27 134.0
33 TraesCS3D01G104600 chr1B 94.565 92 4 1 3260 3351 593927071 593927161 1.460000e-29 141.0
34 TraesCS3D01G104600 chr1A 94.505 91 5 0 3264 3354 505489780 505489870 1.460000e-29 141.0
35 TraesCS3D01G104600 chr1A 94.444 90 4 1 3267 3356 530756575 530756663 1.890000e-28 137.0
36 TraesCS3D01G104600 chr7A 98.276 58 0 1 3847 3903 93493309 93493366 2.480000e-17 100.0
37 TraesCS3D01G104600 chr6D 100.000 54 0 0 3850 3903 21990013 21990066 2.480000e-17 100.0
38 TraesCS3D01G104600 chr6D 100.000 54 0 0 3850 3903 21992377 21992430 2.480000e-17 100.0
39 TraesCS3D01G104600 chr6D 100.000 54 0 0 3850 3903 424650786 424650839 2.480000e-17 100.0
40 TraesCS3D01G104600 chr4D 100.000 54 0 0 3850 3903 27571589 27571536 2.480000e-17 100.0
41 TraesCS3D01G104600 chr4D 100.000 54 0 0 3850 3903 27573298 27573245 2.480000e-17 100.0
42 TraesCS3D01G104600 chr4D 100.000 54 0 0 3850 3903 49934338 49934285 2.480000e-17 100.0
43 TraesCS3D01G104600 chr4D 100.000 54 0 0 3850 3903 121543069 121543016 2.480000e-17 100.0
44 TraesCS3D01G104600 chr4D 100.000 54 0 0 3850 3903 472670394 472670447 2.480000e-17 100.0
45 TraesCS3D01G104600 chr7B 75.936 187 33 10 161 339 220115820 220115638 6.950000e-13 86.1
46 TraesCS3D01G104600 chr7D 80.392 102 3 4 3252 3351 447760519 447760433 1.170000e-05 62.1
47 TraesCS3D01G104600 chrUn 100.000 29 0 0 1634 1662 95440921 95440949 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G104600 chr3D 57159671 57163573 3902 True 1194.366667 6185 92.931667 1 3903 6 chr3D.!!$R2 3902
1 TraesCS3D01G104600 chr3B 90116498 90119354 2856 True 1166.533333 2924 93.398667 1152 3835 3 chr3B.!!$R2 2683
2 TraesCS3D01G104600 chr3B 90148287 90148822 535 True 269.500000 348 87.175500 562 1211 2 chr3B.!!$R3 649
3 TraesCS3D01G104600 chr3A 66226222 66229477 3255 True 942.250000 2639 91.968250 767 3803 4 chr3A.!!$R1 3036

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
883 894 0.179127 TGGCTTCTGCTCTTCGATCG 60.179 55.0 9.36 9.36 39.59 3.69 F
1218 1292 0.250038 AGCAGCGCCATATGGTGTAG 60.250 55.0 30.87 24.39 46.99 2.74 F
2135 2244 0.032813 CCAGAAATCCAGGTGCCCAT 60.033 55.0 0.00 0.00 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1885 1977 0.033504 ATATCGTGACACCGATGGCC 59.966 55.0 17.54 0.00 46.35 5.36 R
2820 2932 0.379669 GCATGCAAGAACTCCGATGG 59.620 55.0 14.21 0.00 0.00 3.51 R
3864 4285 0.037303 TACGCCCTAGATCCGGTAGG 59.963 60.0 9.24 9.24 37.40 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.967270 CCTCCAAAAGGCAGGAAGG 58.033 57.895 0.00 0.00 38.67 3.46
24 25 0.613012 CCTCCAAAAGGCAGGAAGGG 60.613 60.000 0.00 0.00 38.67 3.95
25 26 0.613012 CTCCAAAAGGCAGGAAGGGG 60.613 60.000 0.00 0.00 32.57 4.79
26 27 1.610379 CCAAAAGGCAGGAAGGGGG 60.610 63.158 0.00 0.00 0.00 5.40
70 71 3.120105 CGAGAGCACCGAGGCATA 58.880 61.111 1.23 0.00 35.83 3.14
71 72 1.007964 CGAGAGCACCGAGGCATAG 60.008 63.158 1.23 0.00 35.83 2.23
72 73 1.300542 GAGAGCACCGAGGCATAGC 60.301 63.158 1.23 0.00 35.83 2.97
82 83 4.471761 GGCATAGCCCAAGAGCTC 57.528 61.111 5.27 5.27 44.06 4.09
83 84 1.596477 GGCATAGCCCAAGAGCTCG 60.596 63.158 8.37 0.00 44.06 5.03
84 85 1.144936 GCATAGCCCAAGAGCTCGT 59.855 57.895 8.37 1.01 43.67 4.18
85 86 0.878086 GCATAGCCCAAGAGCTCGTC 60.878 60.000 8.37 0.00 43.67 4.20
86 87 0.596083 CATAGCCCAAGAGCTCGTCG 60.596 60.000 8.37 0.00 43.67 5.12
87 88 1.739338 ATAGCCCAAGAGCTCGTCGG 61.739 60.000 8.90 8.90 43.67 4.79
88 89 4.070552 GCCCAAGAGCTCGTCGGT 62.071 66.667 14.19 0.00 0.00 4.69
89 90 2.125912 CCCAAGAGCTCGTCGGTG 60.126 66.667 8.37 2.98 0.00 4.94
90 91 2.811317 CCAAGAGCTCGTCGGTGC 60.811 66.667 8.37 0.00 0.00 5.01
91 92 2.811317 CAAGAGCTCGTCGGTGCC 60.811 66.667 8.37 1.31 33.19 5.01
92 93 4.421479 AAGAGCTCGTCGGTGCCG 62.421 66.667 8.37 3.94 41.35 5.69
130 131 4.120331 GGCAACGCAGCACCATCC 62.120 66.667 1.99 0.00 35.83 3.51
131 132 3.364441 GCAACGCAGCACCATCCA 61.364 61.111 0.00 0.00 0.00 3.41
132 133 2.872557 CAACGCAGCACCATCCAG 59.127 61.111 0.00 0.00 0.00 3.86
133 134 1.672030 CAACGCAGCACCATCCAGA 60.672 57.895 0.00 0.00 0.00 3.86
134 135 1.376424 AACGCAGCACCATCCAGAG 60.376 57.895 0.00 0.00 0.00 3.35
135 136 3.200593 CGCAGCACCATCCAGAGC 61.201 66.667 0.00 0.00 0.00 4.09
136 137 2.045634 GCAGCACCATCCAGAGCA 60.046 61.111 0.00 0.00 0.00 4.26
137 138 2.404995 GCAGCACCATCCAGAGCAC 61.405 63.158 0.00 0.00 0.00 4.40
138 139 2.104859 CAGCACCATCCAGAGCACG 61.105 63.158 0.00 0.00 0.00 5.34
139 140 3.503363 GCACCATCCAGAGCACGC 61.503 66.667 0.00 0.00 0.00 5.34
140 141 3.190849 CACCATCCAGAGCACGCG 61.191 66.667 3.53 3.53 0.00 6.01
172 173 2.599597 CAGATGGCTGGAAGGGGG 59.400 66.667 0.00 0.00 38.51 5.40
204 205 4.778415 CCGACGCACCGGTGAGAG 62.778 72.222 39.79 30.32 44.23 3.20
206 207 4.357947 GACGCACCGGTGAGAGCA 62.358 66.667 39.79 0.00 34.42 4.26
207 208 4.664677 ACGCACCGGTGAGAGCAC 62.665 66.667 39.79 19.90 44.39 4.40
232 233 4.742201 CAGCCCAGTGACCCGTCG 62.742 72.222 0.00 0.00 0.00 5.12
233 234 4.988716 AGCCCAGTGACCCGTCGA 62.989 66.667 0.00 0.00 0.00 4.20
234 235 4.736896 GCCCAGTGACCCGTCGAC 62.737 72.222 5.18 5.18 0.00 4.20
235 236 4.415332 CCCAGTGACCCGTCGACG 62.415 72.222 30.33 30.33 39.44 5.12
254 255 2.659897 CGATACCTCGGCAGCTGC 60.660 66.667 30.88 30.88 41.27 5.25
276 277 4.154347 GGAGACGCAGCCCTGGAG 62.154 72.222 0.00 0.00 0.00 3.86
277 278 3.071206 GAGACGCAGCCCTGGAGA 61.071 66.667 0.00 0.00 0.00 3.71
278 279 3.073735 AGACGCAGCCCTGGAGAG 61.074 66.667 0.00 0.00 0.00 3.20
279 280 4.828925 GACGCAGCCCTGGAGAGC 62.829 72.222 0.00 0.00 0.00 4.09
282 283 4.792804 GCAGCCCTGGAGAGCACC 62.793 72.222 0.00 0.00 0.00 5.01
283 284 4.463879 CAGCCCTGGAGAGCACCG 62.464 72.222 0.00 0.00 0.00 4.94
309 310 4.147322 CCCGCAACGACGCATCAC 62.147 66.667 0.00 0.00 0.00 3.06
310 311 4.147322 CCGCAACGACGCATCACC 62.147 66.667 0.00 0.00 0.00 4.02
311 312 4.483683 CGCAACGACGCATCACCG 62.484 66.667 0.00 0.00 0.00 4.94
312 313 4.147322 GCAACGACGCATCACCGG 62.147 66.667 0.00 0.00 0.00 5.28
313 314 2.431771 CAACGACGCATCACCGGA 60.432 61.111 9.46 0.00 0.00 5.14
314 315 2.126071 AACGACGCATCACCGGAG 60.126 61.111 9.46 0.00 0.00 4.63
339 340 2.835431 CTCCCTCCACCGCGAGAT 60.835 66.667 8.23 0.00 30.97 2.75
340 341 2.363795 TCCCTCCACCGCGAGATT 60.364 61.111 8.23 0.00 30.97 2.40
597 598 9.788960 CTTACATAAATAAAAGGAGTGCTTTCC 57.211 33.333 10.31 0.00 37.52 3.13
645 646 6.726379 TGGGGATGTTATTAAGTTGACATGA 58.274 36.000 0.00 0.00 33.21 3.07
658 659 7.992180 AAGTTGACATGACATTTTTCAGTTC 57.008 32.000 0.00 0.00 0.00 3.01
660 661 7.546358 AGTTGACATGACATTTTTCAGTTCAA 58.454 30.769 0.00 0.00 32.01 2.69
665 666 8.369218 ACATGACATTTTTCAGTTCAAAATCC 57.631 30.769 0.00 0.00 32.57 3.01
666 667 8.206189 ACATGACATTTTTCAGTTCAAAATCCT 58.794 29.630 0.00 0.00 32.57 3.24
704 714 9.467258 TTCAGTCAAAATGAAATGAACTGAATC 57.533 29.630 10.12 0.00 37.97 2.52
737 747 8.686739 AGTCCTTGGTAATAATATATGGCTCT 57.313 34.615 0.00 0.00 0.00 4.09
738 748 9.784376 AGTCCTTGGTAATAATATATGGCTCTA 57.216 33.333 0.00 0.00 0.00 2.43
750 760 5.957771 ATATGGCTCTAACTTTCCTCACA 57.042 39.130 0.00 0.00 0.00 3.58
751 761 4.640771 ATGGCTCTAACTTTCCTCACAA 57.359 40.909 0.00 0.00 0.00 3.33
752 762 4.431416 TGGCTCTAACTTTCCTCACAAA 57.569 40.909 0.00 0.00 0.00 2.83
753 763 4.389374 TGGCTCTAACTTTCCTCACAAAG 58.611 43.478 0.00 0.00 39.03 2.77
754 764 3.189495 GGCTCTAACTTTCCTCACAAAGC 59.811 47.826 0.00 0.00 36.93 3.51
846 857 3.060602 GCTACTCCAATCCAATACGAGC 58.939 50.000 0.00 0.00 0.00 5.03
859 870 2.160721 TACGAGCCCATCTTTCTCCT 57.839 50.000 0.00 0.00 0.00 3.69
866 877 2.421248 GCCCATCTTTCTCCTCTTCTGG 60.421 54.545 0.00 0.00 0.00 3.86
867 878 2.421248 CCCATCTTTCTCCTCTTCTGGC 60.421 54.545 0.00 0.00 0.00 4.85
868 879 2.504996 CCATCTTTCTCCTCTTCTGGCT 59.495 50.000 0.00 0.00 0.00 4.75
870 881 3.971245 TCTTTCTCCTCTTCTGGCTTC 57.029 47.619 0.00 0.00 0.00 3.86
871 882 3.515562 TCTTTCTCCTCTTCTGGCTTCT 58.484 45.455 0.00 0.00 0.00 2.85
873 884 0.901124 TCTCCTCTTCTGGCTTCTGC 59.099 55.000 0.00 0.00 38.76 4.26
874 885 0.903942 CTCCTCTTCTGGCTTCTGCT 59.096 55.000 0.00 0.00 39.59 4.24
875 886 0.901124 TCCTCTTCTGGCTTCTGCTC 59.099 55.000 0.00 0.00 39.59 4.26
876 887 0.903942 CCTCTTCTGGCTTCTGCTCT 59.096 55.000 0.00 0.00 39.59 4.09
877 888 1.278699 CCTCTTCTGGCTTCTGCTCTT 59.721 52.381 0.00 0.00 39.59 2.85
878 889 2.620242 CTCTTCTGGCTTCTGCTCTTC 58.380 52.381 0.00 0.00 39.59 2.87
879 890 1.067283 TCTTCTGGCTTCTGCTCTTCG 60.067 52.381 0.00 0.00 39.59 3.79
880 891 0.969149 TTCTGGCTTCTGCTCTTCGA 59.031 50.000 0.00 0.00 39.59 3.71
881 892 1.189752 TCTGGCTTCTGCTCTTCGAT 58.810 50.000 0.00 0.00 39.59 3.59
882 893 1.135915 TCTGGCTTCTGCTCTTCGATC 59.864 52.381 0.00 0.00 39.59 3.69
883 894 0.179127 TGGCTTCTGCTCTTCGATCG 60.179 55.000 9.36 9.36 39.59 3.69
900 911 3.574780 GGTGCAGAAACCGCCTAC 58.425 61.111 0.00 0.00 0.00 3.18
947 958 1.479709 AAGCTACTGGATCACTCGCT 58.520 50.000 0.00 0.00 0.00 4.93
965 976 3.127895 TCGCTCTCAAGCTCTTCTTACTC 59.872 47.826 0.00 0.00 46.91 2.59
983 999 3.309296 ACTCCAAAGTCCAGTGAAGAGA 58.691 45.455 0.00 0.00 0.00 3.10
1040 1056 2.363795 CGGTGCCCAGGAGGACTA 60.364 66.667 0.00 0.00 38.24 2.59
1041 1057 2.722201 CGGTGCCCAGGAGGACTAC 61.722 68.421 0.00 0.00 38.24 2.73
1045 1061 2.736826 GCCCAGGAGGACTACCAGC 61.737 68.421 0.00 0.00 38.24 4.85
1104 1120 3.319198 GGGAAGGGCACGTGGAGA 61.319 66.667 18.88 0.00 0.00 3.71
1170 1186 4.372999 GCTCCCCTGCCCTTTGCT 62.373 66.667 0.00 0.00 42.00 3.91
1218 1292 0.250038 AGCAGCGCCATATGGTGTAG 60.250 55.000 30.87 24.39 46.99 2.74
1257 1334 3.627395 TTTGATCGGGTGATTAGCAGT 57.373 42.857 0.00 0.00 34.09 4.40
1282 1359 1.859302 TTTTCCCACAGGTGTTTGCT 58.141 45.000 0.00 0.00 0.00 3.91
1317 1394 1.961277 GCTGGTCACCTGGTGTTCG 60.961 63.158 25.15 13.55 34.79 3.95
1441 1527 6.538742 CCAACAAATAGTTACCATCTGACGAT 59.461 38.462 0.00 0.00 38.74 3.73
1442 1528 7.709182 CCAACAAATAGTTACCATCTGACGATA 59.291 37.037 0.00 0.00 38.74 2.92
1443 1529 8.540492 CAACAAATAGTTACCATCTGACGATAC 58.460 37.037 0.00 0.00 38.74 2.24
1444 1530 8.008513 ACAAATAGTTACCATCTGACGATACT 57.991 34.615 0.00 0.00 0.00 2.12
1445 1531 7.921214 ACAAATAGTTACCATCTGACGATACTG 59.079 37.037 0.00 0.00 0.00 2.74
1446 1532 7.584122 AATAGTTACCATCTGACGATACTGT 57.416 36.000 0.00 0.00 0.00 3.55
1553 1639 5.981088 ATGGTGCACTTATGATTCAACAA 57.019 34.783 17.98 0.00 0.00 2.83
1554 1640 5.375417 TGGTGCACTTATGATTCAACAAG 57.625 39.130 17.98 8.91 0.00 3.16
1567 1659 6.804677 TGATTCAACAAGCAACTGTTAACAT 58.195 32.000 9.13 0.00 37.43 2.71
1572 1664 5.772825 ACAAGCAACTGTTAACATCACAT 57.227 34.783 9.13 0.00 0.00 3.21
1573 1665 5.762045 ACAAGCAACTGTTAACATCACATC 58.238 37.500 9.13 0.00 0.00 3.06
1595 1687 9.097257 ACATCAGTTTGTGAAAATTTACCTTTG 57.903 29.630 0.00 0.00 39.19 2.77
1596 1688 9.311916 CATCAGTTTGTGAAAATTTACCTTTGA 57.688 29.630 0.00 0.00 39.19 2.69
1750 1842 3.746409 CTACTACGCCGCCGACCAC 62.746 68.421 0.00 0.00 38.29 4.16
1790 1882 0.826715 CTTCATCCTCCTCTTCGGCA 59.173 55.000 0.00 0.00 0.00 5.69
1791 1883 1.415659 CTTCATCCTCCTCTTCGGCAT 59.584 52.381 0.00 0.00 0.00 4.40
1819 1911 0.681733 TGTTTCTCTCGCAGCTTCCT 59.318 50.000 0.00 0.00 0.00 3.36
1885 1977 1.586028 CATTGGGTTTGCAGGGACG 59.414 57.895 0.00 0.00 0.00 4.79
1972 2064 9.442047 AGTACTGAAATTACTGAAGATGAAAGG 57.558 33.333 0.00 0.00 0.00 3.11
1975 2067 9.525826 ACTGAAATTACTGAAGATGAAAGGAAT 57.474 29.630 0.00 0.00 0.00 3.01
1977 2069 8.668353 TGAAATTACTGAAGATGAAAGGAATCG 58.332 33.333 0.00 0.00 0.00 3.34
1978 2070 8.792830 AAATTACTGAAGATGAAAGGAATCGA 57.207 30.769 0.00 0.00 0.00 3.59
1979 2071 7.778470 ATTACTGAAGATGAAAGGAATCGAC 57.222 36.000 0.00 0.00 0.00 4.20
1980 2072 4.177026 ACTGAAGATGAAAGGAATCGACG 58.823 43.478 0.00 0.00 0.00 5.12
1985 2094 1.651987 TGAAAGGAATCGACGGCATC 58.348 50.000 0.00 0.00 0.00 3.91
1992 2101 1.609555 GAATCGACGGCATCCTCTACT 59.390 52.381 0.00 0.00 0.00 2.57
2077 2186 3.760684 GGTCTTCAGAGGTTTCAATGCAT 59.239 43.478 0.00 0.00 0.00 3.96
2106 2215 4.702131 ACAATAGCCTTCTCATTTGGTGAC 59.298 41.667 0.00 0.00 32.22 3.67
2135 2244 0.032813 CCAGAAATCCAGGTGCCCAT 60.033 55.000 0.00 0.00 0.00 4.00
2145 2255 2.622452 CCAGGTGCCCATCTGAAATTCT 60.622 50.000 10.02 0.00 42.03 2.40
2148 2258 2.424956 GGTGCCCATCTGAAATTCTGTC 59.575 50.000 0.00 0.00 0.00 3.51
2149 2259 2.424956 GTGCCCATCTGAAATTCTGTCC 59.575 50.000 0.00 0.00 0.00 4.02
2161 2273 7.439356 TCTGAAATTCTGTCCATATCGATGAAC 59.561 37.037 8.54 1.46 34.73 3.18
2163 2275 7.770433 TGAAATTCTGTCCATATCGATGAACTT 59.230 33.333 8.54 0.00 34.73 2.66
2173 2285 8.471609 TCCATATCGATGAACTTAGTGTACAAA 58.528 33.333 8.54 0.00 34.73 2.83
2182 2294 9.897744 ATGAACTTAGTGTACAAACAATCATTG 57.102 29.630 0.00 0.00 37.36 2.82
2229 2341 3.923864 ACTGTGCGAGAACCGGCA 61.924 61.111 0.00 0.00 39.04 5.69
2232 2344 2.970324 GTGCGAGAACCGGCAACA 60.970 61.111 0.00 0.00 39.04 3.33
2253 2365 4.142271 ACAACAAACATGTACAAGGGTGTG 60.142 41.667 0.00 6.96 38.82 3.82
2358 2470 1.280457 ACATCTTGTCCTCCCTGACC 58.720 55.000 0.00 0.00 34.25 4.02
2497 2609 6.338937 CCAACCATCCAGTAACTAACTCTAC 58.661 44.000 0.00 0.00 35.76 2.59
2498 2610 6.154706 CCAACCATCCAGTAACTAACTCTACT 59.845 42.308 0.00 0.00 35.76 2.57
2499 2611 7.310485 CCAACCATCCAGTAACTAACTCTACTT 60.310 40.741 0.00 0.00 35.76 2.24
2500 2612 7.407393 ACCATCCAGTAACTAACTCTACTTC 57.593 40.000 0.00 0.00 35.76 3.01
2501 2613 7.183460 ACCATCCAGTAACTAACTCTACTTCT 58.817 38.462 0.00 0.00 35.76 2.85
2502 2614 7.674772 ACCATCCAGTAACTAACTCTACTTCTT 59.325 37.037 0.00 0.00 35.76 2.52
2548 2660 2.995482 CCGACATACGCGCACTTC 59.005 61.111 5.73 0.00 41.07 3.01
2797 2909 1.898574 CGTCAAGGCCCTTTGCTGT 60.899 57.895 0.00 0.00 40.92 4.40
2820 2932 1.372997 TCGCCGTCTTGTTCTCTGC 60.373 57.895 0.00 0.00 0.00 4.26
2845 2957 1.820519 GGAGTTCTTGCATGCATTGGA 59.179 47.619 23.37 16.73 0.00 3.53
2862 2974 1.005097 TGGAGCCATCAGAGCAATTGT 59.995 47.619 7.40 0.00 0.00 2.71
2949 3061 4.394300 GCTCTTGTGCATCAGTTCACTTAT 59.606 41.667 0.00 0.00 34.49 1.73
2962 3074 8.771920 TCAGTTCACTTATATGTAGGTTTGTG 57.228 34.615 0.00 0.00 0.00 3.33
2967 3079 6.876789 TCACTTATATGTAGGTTTGTGTGTGG 59.123 38.462 0.00 0.00 0.00 4.17
3055 3170 7.760131 AGTTGAGTCACATTTTTGAAACATG 57.240 32.000 2.73 2.73 0.00 3.21
3203 3321 5.567138 AGCAACAAATAAGCATACCACTC 57.433 39.130 0.00 0.00 0.00 3.51
3229 3347 3.669536 AGAAGAACCTAGAGCAAAGCAC 58.330 45.455 0.00 0.00 0.00 4.40
3275 3393 9.965902 ATAAATTATGAACATCATACTCCCTCC 57.034 33.333 0.00 0.00 38.92 4.30
3276 3394 5.468540 TTATGAACATCATACTCCCTCCG 57.531 43.478 0.00 0.00 38.92 4.63
3277 3395 2.747177 TGAACATCATACTCCCTCCGT 58.253 47.619 0.00 0.00 0.00 4.69
3278 3396 3.905968 TGAACATCATACTCCCTCCGTA 58.094 45.455 0.00 0.00 0.00 4.02
3279 3397 4.283337 TGAACATCATACTCCCTCCGTAA 58.717 43.478 0.00 0.00 0.00 3.18
3280 3398 4.712829 TGAACATCATACTCCCTCCGTAAA 59.287 41.667 0.00 0.00 0.00 2.01
3281 3399 4.939052 ACATCATACTCCCTCCGTAAAG 57.061 45.455 0.00 0.00 0.00 1.85
3282 3400 4.543689 ACATCATACTCCCTCCGTAAAGA 58.456 43.478 0.00 0.00 0.00 2.52
3283 3401 4.960469 ACATCATACTCCCTCCGTAAAGAA 59.040 41.667 0.00 0.00 0.00 2.52
3284 3402 5.424252 ACATCATACTCCCTCCGTAAAGAAA 59.576 40.000 0.00 0.00 0.00 2.52
3285 3403 6.099845 ACATCATACTCCCTCCGTAAAGAAAT 59.900 38.462 0.00 0.00 0.00 2.17
3286 3404 7.289317 ACATCATACTCCCTCCGTAAAGAAATA 59.711 37.037 0.00 0.00 0.00 1.40
3287 3405 7.850935 TCATACTCCCTCCGTAAAGAAATAT 57.149 36.000 0.00 0.00 0.00 1.28
3288 3406 8.945195 TCATACTCCCTCCGTAAAGAAATATA 57.055 34.615 0.00 0.00 0.00 0.86
3289 3407 9.370930 TCATACTCCCTCCGTAAAGAAATATAA 57.629 33.333 0.00 0.00 0.00 0.98
3290 3408 9.640963 CATACTCCCTCCGTAAAGAAATATAAG 57.359 37.037 0.00 0.00 0.00 1.73
3291 3409 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
3292 3410 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
3293 3411 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
3294 3412 5.634020 CCCTCCGTAAAGAAATATAAGAGCG 59.366 44.000 0.00 0.00 0.00 5.03
3295 3413 6.214399 CCTCCGTAAAGAAATATAAGAGCGT 58.786 40.000 0.00 0.00 0.00 5.07
3296 3414 6.700520 CCTCCGTAAAGAAATATAAGAGCGTT 59.299 38.462 0.00 0.00 0.00 4.84
3297 3415 7.224167 CCTCCGTAAAGAAATATAAGAGCGTTT 59.776 37.037 0.00 0.00 0.00 3.60
3298 3416 9.241317 CTCCGTAAAGAAATATAAGAGCGTTTA 57.759 33.333 0.00 0.00 0.00 2.01
3299 3417 9.023967 TCCGTAAAGAAATATAAGAGCGTTTAC 57.976 33.333 0.00 0.00 0.00 2.01
3300 3418 8.810427 CCGTAAAGAAATATAAGAGCGTTTACA 58.190 33.333 0.00 0.00 31.53 2.41
3305 3423 9.601217 AAGAAATATAAGAGCGTTTACATCACT 57.399 29.630 0.00 0.00 0.00 3.41
3312 3430 7.813852 AAGAGCGTTTACATCACTAAAGTAG 57.186 36.000 0.00 0.00 0.00 2.57
3313 3431 6.921914 AGAGCGTTTACATCACTAAAGTAGT 58.078 36.000 0.00 0.00 40.28 2.73
3327 3445 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
3328 3446 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
3329 3447 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
3330 3448 9.953697 CTAAAGTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 0.00 1.73
3335 3453 9.344309 GTAGTGATCTAAACGCTCTTATATTCC 57.656 37.037 0.00 0.00 0.00 3.01
3336 3454 8.184304 AGTGATCTAAACGCTCTTATATTCCT 57.816 34.615 0.00 0.00 0.00 3.36
3337 3455 8.643324 AGTGATCTAAACGCTCTTATATTCCTT 58.357 33.333 0.00 0.00 0.00 3.36
3338 3456 8.917655 GTGATCTAAACGCTCTTATATTCCTTC 58.082 37.037 0.00 0.00 0.00 3.46
3339 3457 8.638873 TGATCTAAACGCTCTTATATTCCTTCA 58.361 33.333 0.00 0.00 0.00 3.02
3340 3458 8.819643 ATCTAAACGCTCTTATATTCCTTCAC 57.180 34.615 0.00 0.00 0.00 3.18
3341 3459 7.778083 TCTAAACGCTCTTATATTCCTTCACA 58.222 34.615 0.00 0.00 0.00 3.58
3342 3460 6.910536 AAACGCTCTTATATTCCTTCACAG 57.089 37.500 0.00 0.00 0.00 3.66
3343 3461 5.854010 ACGCTCTTATATTCCTTCACAGA 57.146 39.130 0.00 0.00 0.00 3.41
3344 3462 5.837437 ACGCTCTTATATTCCTTCACAGAG 58.163 41.667 0.00 0.00 0.00 3.35
3345 3463 5.221342 ACGCTCTTATATTCCTTCACAGAGG 60.221 44.000 0.00 0.00 38.20 3.69
3346 3464 5.546526 GCTCTTATATTCCTTCACAGAGGG 58.453 45.833 0.00 0.00 37.41 4.30
3347 3465 5.305644 GCTCTTATATTCCTTCACAGAGGGA 59.694 44.000 0.00 0.00 36.01 4.20
3348 3466 6.518200 GCTCTTATATTCCTTCACAGAGGGAG 60.518 46.154 0.00 0.00 38.98 4.30
3363 3481 8.057011 TCACAGAGGGAGTACATAACAATAGTA 58.943 37.037 0.00 0.00 0.00 1.82
3412 3530 5.585047 AGGACTAGGACACATTAAATTTCGC 59.415 40.000 0.00 0.00 0.00 4.70
3416 3534 5.659440 AGGACACATTAAATTTCGCCAAT 57.341 34.783 0.00 0.00 0.00 3.16
3421 3539 8.878769 GGACACATTAAATTTCGCCAATAATTT 58.121 29.630 0.00 0.00 37.61 1.82
3444 3562 7.496529 TTATTCTCAATCTTAGAATTGGCCG 57.503 36.000 0.00 0.00 40.03 6.13
3447 3565 3.808728 TCAATCTTAGAATTGGCCGAGG 58.191 45.455 0.00 0.00 37.27 4.63
3448 3566 3.199946 TCAATCTTAGAATTGGCCGAGGT 59.800 43.478 0.00 0.00 37.27 3.85
3449 3567 3.933861 ATCTTAGAATTGGCCGAGGTT 57.066 42.857 0.00 0.00 0.00 3.50
3451 3569 3.343617 TCTTAGAATTGGCCGAGGTTTG 58.656 45.455 0.00 0.00 0.00 2.93
3453 3571 1.247567 AGAATTGGCCGAGGTTTGTG 58.752 50.000 0.00 0.00 0.00 3.33
3454 3572 1.202879 AGAATTGGCCGAGGTTTGTGA 60.203 47.619 0.00 0.00 0.00 3.58
3456 3574 0.609131 ATTGGCCGAGGTTTGTGAGG 60.609 55.000 0.00 0.00 0.00 3.86
3457 3575 1.990160 TTGGCCGAGGTTTGTGAGGT 61.990 55.000 0.00 0.00 0.00 3.85
3458 3576 1.966451 GGCCGAGGTTTGTGAGGTG 60.966 63.158 0.00 0.00 0.00 4.00
3529 3949 4.216472 GGTGAATGAGGAGAAAGGTTTCAC 59.784 45.833 5.30 0.00 40.25 3.18
3542 3962 3.078837 AGGTTTCACGTGACAGTTTGTT 58.921 40.909 19.90 0.00 0.00 2.83
3544 3964 4.696402 AGGTTTCACGTGACAGTTTGTTTA 59.304 37.500 19.90 0.00 0.00 2.01
3547 3967 6.020995 GGTTTCACGTGACAGTTTGTTTATTG 60.021 38.462 19.90 0.00 0.00 1.90
3550 3970 5.034152 CACGTGACAGTTTGTTTATTGCTT 58.966 37.500 10.90 0.00 0.00 3.91
3551 3971 5.034152 ACGTGACAGTTTGTTTATTGCTTG 58.966 37.500 0.00 0.00 0.00 4.01
3554 3974 6.140108 CGTGACAGTTTGTTTATTGCTTGTAC 59.860 38.462 0.00 0.00 0.00 2.90
3580 4000 0.952010 GGGCTGCTGCAAATGGTTTG 60.952 55.000 17.89 0.00 43.44 2.93
3581 4001 0.952010 GGCTGCTGCAAATGGTTTGG 60.952 55.000 17.89 0.00 40.94 3.28
3589 4009 5.221601 TGCTGCAAATGGTTTGGAAGAAATA 60.222 36.000 0.00 0.00 40.53 1.40
3698 4119 2.364002 TCATGGTCAAGTGTCGAGACAA 59.636 45.455 15.80 0.00 43.77 3.18
3758 4179 5.462405 AGTTAGAGATGTGAAAGTGTCGAC 58.538 41.667 9.11 9.11 0.00 4.20
3804 4225 5.014858 AGGTTAGGTAGAGATGTGAAACGA 58.985 41.667 0.00 0.00 42.39 3.85
3806 4227 6.154706 AGGTTAGGTAGAGATGTGAAACGAAT 59.845 38.462 0.00 0.00 42.39 3.34
3813 4234 5.655488 AGAGATGTGAAACGAATAGGACTG 58.345 41.667 0.00 0.00 42.39 3.51
3814 4235 4.184629 AGATGTGAAACGAATAGGACTGC 58.815 43.478 0.00 0.00 42.39 4.40
3822 4243 5.401531 AACGAATAGGACTGCTTTGTCTA 57.598 39.130 0.00 0.00 37.16 2.59
3835 4256 9.813080 GACTGCTTTGTCTATTACTTTTGTTAG 57.187 33.333 0.00 0.00 34.39 2.34
3836 4257 8.784043 ACTGCTTTGTCTATTACTTTTGTTAGG 58.216 33.333 0.00 0.00 0.00 2.69
3837 4258 8.685838 TGCTTTGTCTATTACTTTTGTTAGGT 57.314 30.769 0.00 0.00 0.00 3.08
3838 4259 9.781633 TGCTTTGTCTATTACTTTTGTTAGGTA 57.218 29.630 0.00 0.00 0.00 3.08
3851 4272 9.511272 ACTTTTGTTAGGTATAAATTCTTCGGT 57.489 29.630 0.00 0.00 0.00 4.69
3854 4275 9.603921 TTTGTTAGGTATAAATTCTTCGGTAGG 57.396 33.333 0.00 0.00 0.00 3.18
3855 4276 8.537728 TGTTAGGTATAAATTCTTCGGTAGGA 57.462 34.615 0.00 0.00 0.00 2.94
3856 4277 8.636213 TGTTAGGTATAAATTCTTCGGTAGGAG 58.364 37.037 0.00 0.00 0.00 3.69
3857 4278 6.099159 AGGTATAAATTCTTCGGTAGGAGC 57.901 41.667 0.00 0.00 0.00 4.70
3858 4279 5.839606 AGGTATAAATTCTTCGGTAGGAGCT 59.160 40.000 0.00 0.00 0.00 4.09
3859 4280 7.008941 AGGTATAAATTCTTCGGTAGGAGCTA 58.991 38.462 0.00 0.00 0.00 3.32
3860 4281 7.177041 AGGTATAAATTCTTCGGTAGGAGCTAG 59.823 40.741 0.00 0.00 0.00 3.42
3861 4282 4.674281 AAATTCTTCGGTAGGAGCTAGG 57.326 45.455 0.00 0.00 0.00 3.02
3862 4283 2.068834 TTCTTCGGTAGGAGCTAGGG 57.931 55.000 0.00 0.00 0.00 3.53
3863 4284 0.467659 TCTTCGGTAGGAGCTAGGGC 60.468 60.000 0.00 0.00 39.06 5.19
3864 4285 1.457079 TTCGGTAGGAGCTAGGGCC 60.457 63.158 0.00 0.00 39.73 5.80
3865 4286 2.918276 CGGTAGGAGCTAGGGCCC 60.918 72.222 16.46 16.46 39.73 5.80
3866 4287 2.615773 GGTAGGAGCTAGGGCCCT 59.384 66.667 31.35 31.35 40.47 5.19
3867 4288 1.859234 GGTAGGAGCTAGGGCCCTA 59.141 63.158 30.08 30.08 39.02 3.53
3868 4289 3.054679 GTAGGAGCTAGGGCCCTAC 57.945 63.158 28.66 22.67 45.53 3.18
3869 4290 0.542467 GTAGGAGCTAGGGCCCTACC 60.542 65.000 28.66 25.86 45.69 3.18
3870 4291 2.077842 TAGGAGCTAGGGCCCTACCG 62.078 65.000 28.66 19.96 40.62 4.02
3871 4292 2.918276 GAGCTAGGGCCCTACCGG 60.918 72.222 28.66 19.20 40.62 5.28
3872 4293 3.436028 AGCTAGGGCCCTACCGGA 61.436 66.667 28.66 9.53 40.62 5.14
3873 4294 2.203803 GCTAGGGCCCTACCGGAT 60.204 66.667 28.66 4.81 40.62 4.18
3874 4295 2.284276 GCTAGGGCCCTACCGGATC 61.284 68.421 28.66 1.35 40.62 3.36
3875 4296 1.465623 CTAGGGCCCTACCGGATCT 59.534 63.158 28.66 3.07 40.62 2.75
3876 4297 0.702902 CTAGGGCCCTACCGGATCTA 59.297 60.000 28.66 6.13 40.62 1.98
3877 4298 0.702902 TAGGGCCCTACCGGATCTAG 59.297 60.000 28.66 0.00 40.62 2.43
3878 4299 1.609794 GGGCCCTACCGGATCTAGG 60.610 68.421 17.04 9.32 40.62 3.02
3880 4301 4.115270 CCCTACCGGATCTAGGGC 57.885 66.667 19.81 0.00 43.32 5.19
3881 4302 1.977544 CCCTACCGGATCTAGGGCG 60.978 68.421 19.81 1.50 43.32 6.13
3882 4303 1.228490 CCTACCGGATCTAGGGCGT 60.228 63.158 9.46 0.00 0.00 5.68
3883 4304 0.037303 CCTACCGGATCTAGGGCGTA 59.963 60.000 9.46 0.00 0.00 4.42
3884 4305 1.451067 CTACCGGATCTAGGGCGTAG 58.549 60.000 9.46 7.90 0.00 3.51
3885 4306 0.037303 TACCGGATCTAGGGCGTAGG 59.963 60.000 9.46 1.55 0.00 3.18
3886 4307 1.228490 CCGGATCTAGGGCGTAGGT 60.228 63.158 13.77 7.06 0.00 3.08
3887 4308 0.826672 CCGGATCTAGGGCGTAGGTT 60.827 60.000 13.77 2.79 0.00 3.50
3888 4309 0.314302 CGGATCTAGGGCGTAGGTTG 59.686 60.000 13.77 0.99 0.00 3.77
3889 4310 1.411041 GGATCTAGGGCGTAGGTTGT 58.589 55.000 13.77 0.00 0.00 3.32
3890 4311 2.590821 GGATCTAGGGCGTAGGTTGTA 58.409 52.381 13.77 0.00 0.00 2.41
3891 4312 2.557490 GGATCTAGGGCGTAGGTTGTAG 59.443 54.545 13.77 0.00 0.00 2.74
3892 4313 2.062971 TCTAGGGCGTAGGTTGTAGG 57.937 55.000 13.77 0.00 0.00 3.18
3893 4314 1.038280 CTAGGGCGTAGGTTGTAGGG 58.962 60.000 6.33 0.00 0.00 3.53
3894 4315 0.397535 TAGGGCGTAGGTTGTAGGGG 60.398 60.000 0.00 0.00 0.00 4.79
3895 4316 1.686800 GGGCGTAGGTTGTAGGGGA 60.687 63.158 0.00 0.00 0.00 4.81
3896 4317 1.266867 GGGCGTAGGTTGTAGGGGAA 61.267 60.000 0.00 0.00 0.00 3.97
3897 4318 0.177373 GGCGTAGGTTGTAGGGGAAG 59.823 60.000 0.00 0.00 0.00 3.46
3898 4319 0.177373 GCGTAGGTTGTAGGGGAAGG 59.823 60.000 0.00 0.00 0.00 3.46
3899 4320 1.856629 CGTAGGTTGTAGGGGAAGGA 58.143 55.000 0.00 0.00 0.00 3.36
3900 4321 1.755380 CGTAGGTTGTAGGGGAAGGAG 59.245 57.143 0.00 0.00 0.00 3.69
3901 4322 2.117051 GTAGGTTGTAGGGGAAGGAGG 58.883 57.143 0.00 0.00 0.00 4.30
3902 4323 0.253207 AGGTTGTAGGGGAAGGAGGG 60.253 60.000 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 0.613012 CCCCTTCCTGCCTTTTGGAG 60.613 60.000 0.00 0.00 44.07 3.86
7 8 1.464722 CCCCTTCCTGCCTTTTGGA 59.535 57.895 0.00 0.00 44.07 3.53
8 9 1.610379 CCCCCTTCCTGCCTTTTGG 60.610 63.158 0.00 0.00 44.18 3.28
9 10 4.118584 CCCCCTTCCTGCCTTTTG 57.881 61.111 0.00 0.00 0.00 2.44
52 53 3.138930 TATGCCTCGGTGCTCTCGC 62.139 63.158 0.00 0.00 0.00 5.03
53 54 1.007964 CTATGCCTCGGTGCTCTCG 60.008 63.158 0.00 0.00 0.00 4.04
54 55 1.300542 GCTATGCCTCGGTGCTCTC 60.301 63.158 0.00 0.00 0.00 3.20
55 56 2.801631 GGCTATGCCTCGGTGCTCT 61.802 63.158 0.73 0.00 46.69 4.09
56 57 2.280457 GGCTATGCCTCGGTGCTC 60.280 66.667 0.73 0.00 46.69 4.26
66 67 0.878086 GACGAGCTCTTGGGCTATGC 60.878 60.000 12.85 0.00 43.20 3.14
67 68 0.596083 CGACGAGCTCTTGGGCTATG 60.596 60.000 12.85 0.00 43.20 2.23
68 69 1.736586 CGACGAGCTCTTGGGCTAT 59.263 57.895 12.85 0.00 43.20 2.97
69 70 2.415608 CCGACGAGCTCTTGGGCTA 61.416 63.158 12.85 0.00 43.20 3.93
70 71 3.764466 CCGACGAGCTCTTGGGCT 61.764 66.667 12.85 0.00 46.11 5.19
71 72 4.070552 ACCGACGAGCTCTTGGGC 62.071 66.667 19.37 1.98 0.00 5.36
72 73 2.125912 CACCGACGAGCTCTTGGG 60.126 66.667 18.10 18.10 0.00 4.12
73 74 2.811317 GCACCGACGAGCTCTTGG 60.811 66.667 12.85 13.90 0.00 3.61
74 75 2.811317 GGCACCGACGAGCTCTTG 60.811 66.667 12.85 0.00 0.00 3.02
75 76 4.421479 CGGCACCGACGAGCTCTT 62.421 66.667 12.85 1.07 42.83 2.85
112 113 4.465512 GATGGTGCTGCGTTGCCG 62.466 66.667 0.00 0.00 37.07 5.69
113 114 4.120331 GGATGGTGCTGCGTTGCC 62.120 66.667 0.00 0.00 0.00 4.52
114 115 3.332493 CTGGATGGTGCTGCGTTGC 62.332 63.158 0.00 0.00 0.00 4.17
115 116 1.642037 CTCTGGATGGTGCTGCGTTG 61.642 60.000 0.00 0.00 0.00 4.10
116 117 1.376424 CTCTGGATGGTGCTGCGTT 60.376 57.895 0.00 0.00 0.00 4.84
117 118 2.267006 CTCTGGATGGTGCTGCGT 59.733 61.111 0.00 0.00 0.00 5.24
118 119 3.200593 GCTCTGGATGGTGCTGCG 61.201 66.667 0.00 0.00 0.00 5.18
119 120 2.045634 TGCTCTGGATGGTGCTGC 60.046 61.111 0.00 0.00 0.00 5.25
120 121 2.104859 CGTGCTCTGGATGGTGCTG 61.105 63.158 0.00 0.00 0.00 4.41
121 122 2.267006 CGTGCTCTGGATGGTGCT 59.733 61.111 0.00 0.00 0.00 4.40
122 123 3.503363 GCGTGCTCTGGATGGTGC 61.503 66.667 0.00 0.00 0.00 5.01
123 124 3.190849 CGCGTGCTCTGGATGGTG 61.191 66.667 0.00 0.00 0.00 4.17
155 156 2.599597 CCCCCTTCCAGCCATCTG 59.400 66.667 0.00 0.00 40.02 2.90
189 190 4.357947 TGCTCTCACCGGTGCGTC 62.358 66.667 30.25 18.93 0.00 5.19
190 191 4.664677 GTGCTCTCACCGGTGCGT 62.665 66.667 30.25 0.00 37.24 5.24
215 216 4.742201 CGACGGGTCACTGGGCTG 62.742 72.222 0.00 0.00 0.00 4.85
216 217 4.988716 TCGACGGGTCACTGGGCT 62.989 66.667 0.00 0.00 0.00 5.19
217 218 4.736896 GTCGACGGGTCACTGGGC 62.737 72.222 0.00 0.00 0.00 5.36
218 219 4.415332 CGTCGACGGGTCACTGGG 62.415 72.222 29.70 0.00 35.37 4.45
259 260 4.154347 CTCCAGGGCTGCGTCTCC 62.154 72.222 0.00 0.00 0.00 3.71
260 261 3.071206 TCTCCAGGGCTGCGTCTC 61.071 66.667 0.00 0.00 0.00 3.36
261 262 3.073735 CTCTCCAGGGCTGCGTCT 61.074 66.667 0.00 0.00 0.00 4.18
262 263 4.828925 GCTCTCCAGGGCTGCGTC 62.829 72.222 0.00 0.00 0.00 5.19
265 266 4.792804 GGTGCTCTCCAGGGCTGC 62.793 72.222 0.00 0.00 0.00 5.25
266 267 4.463879 CGGTGCTCTCCAGGGCTG 62.464 72.222 0.00 0.00 0.00 4.85
292 293 4.147322 GTGATGCGTCGTTGCGGG 62.147 66.667 0.58 0.00 37.81 6.13
293 294 4.147322 GGTGATGCGTCGTTGCGG 62.147 66.667 0.58 0.00 37.81 5.69
294 295 4.483683 CGGTGATGCGTCGTTGCG 62.484 66.667 0.58 0.00 37.81 4.85
295 296 4.147322 CCGGTGATGCGTCGTTGC 62.147 66.667 0.58 0.00 0.00 4.17
296 297 2.431771 TCCGGTGATGCGTCGTTG 60.432 61.111 0.00 0.00 0.00 4.10
297 298 2.126071 CTCCGGTGATGCGTCGTT 60.126 61.111 0.00 0.00 0.00 3.85
298 299 4.129737 CCTCCGGTGATGCGTCGT 62.130 66.667 4.76 0.00 0.00 4.34
299 300 4.873129 CCCTCCGGTGATGCGTCG 62.873 72.222 4.76 0.00 0.00 5.12
323 324 2.363795 AATCTCGCGGTGGAGGGA 60.364 61.111 6.13 0.00 34.74 4.20
574 575 9.178758 CTAGGAAAGCACTCCTTTTATTTATGT 57.821 33.333 11.50 0.00 43.76 2.29
580 581 5.416013 GCAACTAGGAAAGCACTCCTTTTAT 59.584 40.000 11.50 0.00 43.76 1.40
589 590 2.162408 GACATGGCAACTAGGAAAGCAC 59.838 50.000 0.00 0.00 37.61 4.40
592 593 7.396540 AAAATAGACATGGCAACTAGGAAAG 57.603 36.000 0.00 0.00 37.61 2.62
678 679 9.467258 GATTCAGTTCATTTCATTTTGACTGAA 57.533 29.630 15.60 15.60 40.28 3.02
737 747 5.767665 TGCTATTGCTTTGTGAGGAAAGTTA 59.232 36.000 0.00 0.00 39.28 2.24
738 748 4.584325 TGCTATTGCTTTGTGAGGAAAGTT 59.416 37.500 0.00 0.00 39.28 2.66
739 749 4.144297 TGCTATTGCTTTGTGAGGAAAGT 58.856 39.130 0.00 0.00 39.28 2.66
740 750 4.771590 TGCTATTGCTTTGTGAGGAAAG 57.228 40.909 0.00 0.00 39.28 2.62
741 751 6.681120 GCATATGCTATTGCTTTGTGAGGAAA 60.681 38.462 20.64 0.00 37.37 3.13
742 752 5.221106 GCATATGCTATTGCTTTGTGAGGAA 60.221 40.000 20.64 0.00 37.85 3.36
743 753 4.276678 GCATATGCTATTGCTTTGTGAGGA 59.723 41.667 20.64 0.00 40.48 3.71
744 754 4.543692 GCATATGCTATTGCTTTGTGAGG 58.456 43.478 20.64 0.00 40.48 3.86
783 793 5.356751 GCTTTGGAATGGGAAAACAAAAACT 59.643 36.000 0.00 0.00 31.52 2.66
846 857 2.421248 GCCAGAAGAGGAGAAAGATGGG 60.421 54.545 0.00 0.00 0.00 4.00
859 870 1.067283 CGAAGAGCAGAAGCCAGAAGA 60.067 52.381 0.00 0.00 43.56 2.87
873 884 1.656095 GTTTCTGCACCGATCGAAGAG 59.344 52.381 18.66 6.86 43.63 2.85
874 885 1.671850 GGTTTCTGCACCGATCGAAGA 60.672 52.381 18.66 10.85 45.75 2.87
875 886 0.721718 GGTTTCTGCACCGATCGAAG 59.278 55.000 18.66 9.60 0.00 3.79
876 887 2.835605 GGTTTCTGCACCGATCGAA 58.164 52.632 18.66 0.00 0.00 3.71
877 888 4.590487 GGTTTCTGCACCGATCGA 57.410 55.556 18.66 0.00 0.00 3.59
883 894 2.388232 CGTAGGCGGTTTCTGCACC 61.388 63.158 3.03 0.00 0.00 5.01
899 910 3.326747 GCCTCTTATCTTGTGTTGACGT 58.673 45.455 0.00 0.00 0.00 4.34
900 911 2.345641 CGCCTCTTATCTTGTGTTGACG 59.654 50.000 0.00 0.00 0.00 4.35
947 958 5.305644 ACTTTGGAGTAAGAAGAGCTTGAGA 59.694 40.000 0.00 0.00 37.42 3.27
965 976 2.810852 GCTTCTCTTCACTGGACTTTGG 59.189 50.000 0.00 0.00 0.00 3.28
983 999 3.881019 ATGCCCACTGCTGCTGCTT 62.881 57.895 17.00 0.74 42.00 3.91
1076 1092 2.751837 CCTTCCCTTCCTTGGCGC 60.752 66.667 0.00 0.00 0.00 6.53
1081 1097 2.154074 ACGTGCCCTTCCCTTCCTT 61.154 57.895 0.00 0.00 0.00 3.36
1170 1186 2.679092 CAGCCCAGGGATGCAAGA 59.321 61.111 11.88 0.00 30.51 3.02
1218 1292 7.698130 CGATCAAAAATAACCAACCAGAGAATC 59.302 37.037 0.00 0.00 0.00 2.52
1257 1334 3.094484 ACACCTGTGGGAAAAACAGAA 57.906 42.857 5.17 0.00 46.55 3.02
1282 1359 1.220749 GCGTCCCTATCACCAAGCA 59.779 57.895 0.00 0.00 0.00 3.91
1335 1412 2.111043 CCGTTCCACTGCCACAGT 59.889 61.111 0.00 0.00 46.51 3.55
1441 1527 7.399245 AAAAAGGTTTCTGCAGTTAACAGTA 57.601 32.000 24.99 0.00 36.50 2.74
1442 1528 5.914898 AAAAGGTTTCTGCAGTTAACAGT 57.085 34.783 24.99 14.85 36.50 3.55
1553 1639 5.065914 ACTGATGTGATGTTAACAGTTGCT 58.934 37.500 14.65 0.00 35.52 3.91
1554 1640 5.362556 ACTGATGTGATGTTAACAGTTGC 57.637 39.130 14.65 5.08 35.52 4.17
1594 1686 7.284919 TCAACAAAGTACAGAGTCACTATCA 57.715 36.000 0.00 0.00 0.00 2.15
1595 1687 8.029522 TGATCAACAAAGTACAGAGTCACTATC 58.970 37.037 0.00 0.00 0.00 2.08
1596 1688 7.896811 TGATCAACAAAGTACAGAGTCACTAT 58.103 34.615 0.00 0.00 0.00 2.12
1597 1689 7.284919 TGATCAACAAAGTACAGAGTCACTA 57.715 36.000 0.00 0.00 0.00 2.74
1790 1882 2.292103 GAGAGAAACAGCTCGAGCAT 57.708 50.000 36.87 22.97 45.16 3.79
1791 1883 3.802613 GAGAGAAACAGCTCGAGCA 57.197 52.632 36.87 0.00 45.16 4.26
1819 1911 1.143838 CCGGAGCGAATGGATGTCA 59.856 57.895 0.00 0.00 0.00 3.58
1885 1977 0.033504 ATATCGTGACACCGATGGCC 59.966 55.000 17.54 0.00 46.35 5.36
1958 2050 4.177026 CGTCGATTCCTTTCATCTTCAGT 58.823 43.478 0.00 0.00 0.00 3.41
1967 2059 0.938008 GGATGCCGTCGATTCCTTTC 59.062 55.000 0.00 0.00 0.00 2.62
1968 2060 0.541863 AGGATGCCGTCGATTCCTTT 59.458 50.000 0.00 0.00 34.98 3.11
1969 2061 0.105039 GAGGATGCCGTCGATTCCTT 59.895 55.000 10.61 0.00 38.71 3.36
1971 2063 0.959553 TAGAGGATGCCGTCGATTCC 59.040 55.000 0.00 0.00 32.77 3.01
1972 2064 1.609555 AGTAGAGGATGCCGTCGATTC 59.390 52.381 0.00 0.00 32.77 2.52
1975 2067 1.725557 GCAGTAGAGGATGCCGTCGA 61.726 60.000 0.00 0.00 36.41 4.20
1976 2068 1.299468 GCAGTAGAGGATGCCGTCG 60.299 63.158 0.00 0.00 36.41 5.12
1977 2069 0.249238 CTGCAGTAGAGGATGCCGTC 60.249 60.000 5.25 0.00 41.85 4.79
1978 2070 1.680522 CCTGCAGTAGAGGATGCCGT 61.681 60.000 13.81 0.00 41.85 5.68
1979 2071 1.068753 CCTGCAGTAGAGGATGCCG 59.931 63.158 13.81 0.00 41.85 5.69
1980 2072 1.055040 ATCCTGCAGTAGAGGATGCC 58.945 55.000 13.81 0.00 46.72 4.40
1985 2094 2.796557 TCCGATATCCTGCAGTAGAGG 58.203 52.381 13.81 8.27 0.00 3.69
1992 2101 2.839486 GGTCAATCCGATATCCTGCA 57.161 50.000 0.00 0.00 0.00 4.41
2022 2131 2.427506 CTTCCTTGCAGACTGTAACCC 58.572 52.381 1.38 0.00 0.00 4.11
2135 2244 7.054491 TCATCGATATGGACAGAATTTCAGA 57.946 36.000 0.00 0.00 33.61 3.27
2145 2255 6.465439 ACACTAAGTTCATCGATATGGACA 57.535 37.500 0.00 0.00 43.24 4.02
2148 2258 8.540492 GTTTGTACACTAAGTTCATCGATATGG 58.460 37.037 0.00 0.00 33.61 2.74
2149 2259 9.083080 TGTTTGTACACTAAGTTCATCGATATG 57.917 33.333 0.00 0.00 0.00 1.78
2182 2294 5.796437 GCATTTCAGCCAATTTTATGCAAAC 59.204 36.000 0.00 0.00 37.45 2.93
2188 2300 5.114081 GCTCTGCATTTCAGCCAATTTTAT 58.886 37.500 0.00 0.00 42.56 1.40
2194 2306 0.599558 GTGCTCTGCATTTCAGCCAA 59.400 50.000 0.00 0.00 41.91 4.52
2214 2326 2.970324 GTTGCCGGTTCTCGCACA 60.970 61.111 1.90 0.00 37.59 4.57
2229 2341 4.464597 ACACCCTTGTACATGTTTGTTGTT 59.535 37.500 2.30 0.00 37.28 2.83
2232 2344 4.020543 ACACACCCTTGTACATGTTTGTT 58.979 39.130 2.30 0.00 37.28 2.83
2253 2365 0.730155 TCAATGTGTACGCCGTCGAC 60.730 55.000 5.18 5.18 39.41 4.20
2358 2470 1.545582 ACAATTGCCCATCTTGGAACG 59.454 47.619 5.05 0.00 40.96 3.95
2466 2578 2.610438 ACTGGATGGTTGGCAAGAAT 57.390 45.000 0.00 0.00 0.00 2.40
2473 2585 5.422214 AGAGTTAGTTACTGGATGGTTGG 57.578 43.478 0.00 0.00 37.17 3.77
2501 2613 9.155975 GCAGTATATCTTTGTGAAGAAGAAGAA 57.844 33.333 0.00 0.00 44.61 2.52
2502 2614 8.314021 TGCAGTATATCTTTGTGAAGAAGAAGA 58.686 33.333 0.00 0.00 44.61 2.87
2548 2660 2.705826 GCCTGAATGCGCTCTTCG 59.294 61.111 9.73 8.23 42.12 3.79
2728 2840 0.700564 TCCCAGCCTTCAGAAATGCT 59.299 50.000 1.73 1.73 36.89 3.79
2779 2891 1.898574 ACAGCAAAGGGCCTTGACG 60.899 57.895 21.72 12.71 46.50 4.35
2802 2914 1.372997 GCAGAGAACAAGACGGCGA 60.373 57.895 16.62 0.00 0.00 5.54
2820 2932 0.379669 GCATGCAAGAACTCCGATGG 59.620 55.000 14.21 0.00 0.00 3.51
2845 2957 0.815734 GCACAATTGCTCTGATGGCT 59.184 50.000 5.05 0.00 46.17 4.75
2862 2974 0.520404 GTAGGTCTTGACGTCGAGCA 59.480 55.000 25.44 13.11 0.00 4.26
2949 3061 3.181449 ACTGCCACACACAAACCTACATA 60.181 43.478 0.00 0.00 0.00 2.29
2962 3074 2.093216 GCATCTAGCACTGCCACAC 58.907 57.895 0.00 0.00 44.79 3.82
3055 3170 8.821894 GTCTGTGTTTTGATTCTGATCCTATAC 58.178 37.037 0.00 0.00 0.00 1.47
3203 3321 5.295540 GCTTTGCTCTAGGTTCTTCTATTGG 59.704 44.000 0.00 0.00 0.00 3.16
3229 3347 7.443259 TTTATATGACAGCATCCATCATGTG 57.557 36.000 0.00 0.00 34.86 3.21
3266 3384 9.075678 CTCTTATATTTCTTTACGGAGGGAGTA 57.924 37.037 0.00 0.00 0.00 2.59
3267 3385 7.471679 GCTCTTATATTTCTTTACGGAGGGAGT 60.472 40.741 0.00 0.00 0.00 3.85
3268 3386 6.869388 GCTCTTATATTTCTTTACGGAGGGAG 59.131 42.308 0.00 0.00 0.00 4.30
3269 3387 6.516194 CGCTCTTATATTTCTTTACGGAGGGA 60.516 42.308 0.00 0.00 34.63 4.20
3270 3388 5.634020 CGCTCTTATATTTCTTTACGGAGGG 59.366 44.000 0.00 0.00 0.00 4.30
3271 3389 6.214399 ACGCTCTTATATTTCTTTACGGAGG 58.786 40.000 0.00 0.00 0.00 4.30
3272 3390 7.695869 AACGCTCTTATATTTCTTTACGGAG 57.304 36.000 0.00 0.00 0.00 4.63
3273 3391 9.023967 GTAAACGCTCTTATATTTCTTTACGGA 57.976 33.333 0.00 0.00 0.00 4.69
3274 3392 8.810427 TGTAAACGCTCTTATATTTCTTTACGG 58.190 33.333 0.00 0.00 0.00 4.02
3279 3397 9.601217 AGTGATGTAAACGCTCTTATATTTCTT 57.399 29.630 0.00 0.00 0.00 2.52
3286 3404 9.517609 CTACTTTAGTGATGTAAACGCTCTTAT 57.482 33.333 0.00 0.00 29.98 1.73
3287 3405 8.517878 ACTACTTTAGTGATGTAAACGCTCTTA 58.482 33.333 0.00 0.00 37.69 2.10
3288 3406 7.376615 ACTACTTTAGTGATGTAAACGCTCTT 58.623 34.615 0.00 0.00 37.69 2.85
3289 3407 6.921914 ACTACTTTAGTGATGTAAACGCTCT 58.078 36.000 0.00 0.00 37.69 4.09
3303 3421 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
3304 3422 9.953697 ATAAGAGCGTTTAGATCACTACTTTAG 57.046 33.333 0.00 0.00 37.82 1.85
3309 3427 9.344309 GGAATATAAGAGCGTTTAGATCACTAC 57.656 37.037 0.00 0.00 37.82 2.73
3310 3428 9.298250 AGGAATATAAGAGCGTTTAGATCACTA 57.702 33.333 0.00 0.00 37.82 2.74
3311 3429 8.184304 AGGAATATAAGAGCGTTTAGATCACT 57.816 34.615 0.00 0.00 37.82 3.41
3312 3430 8.819643 AAGGAATATAAGAGCGTTTAGATCAC 57.180 34.615 0.00 0.00 37.82 3.06
3313 3431 8.638873 TGAAGGAATATAAGAGCGTTTAGATCA 58.361 33.333 0.00 0.00 37.82 2.92
3314 3432 8.917655 GTGAAGGAATATAAGAGCGTTTAGATC 58.082 37.037 0.00 0.00 35.01 2.75
3315 3433 8.421784 TGTGAAGGAATATAAGAGCGTTTAGAT 58.578 33.333 0.00 0.00 0.00 1.98
3316 3434 7.778083 TGTGAAGGAATATAAGAGCGTTTAGA 58.222 34.615 0.00 0.00 0.00 2.10
3317 3435 7.921214 TCTGTGAAGGAATATAAGAGCGTTTAG 59.079 37.037 0.00 0.00 0.00 1.85
3318 3436 7.778083 TCTGTGAAGGAATATAAGAGCGTTTA 58.222 34.615 0.00 0.00 0.00 2.01
3319 3437 6.640518 TCTGTGAAGGAATATAAGAGCGTTT 58.359 36.000 0.00 0.00 0.00 3.60
3320 3438 6.222038 TCTGTGAAGGAATATAAGAGCGTT 57.778 37.500 0.00 0.00 0.00 4.84
3321 3439 5.221342 CCTCTGTGAAGGAATATAAGAGCGT 60.221 44.000 0.00 0.00 38.87 5.07
3322 3440 5.226396 CCTCTGTGAAGGAATATAAGAGCG 58.774 45.833 0.00 0.00 38.87 5.03
3323 3441 5.305644 TCCCTCTGTGAAGGAATATAAGAGC 59.694 44.000 0.00 0.00 38.87 4.09
3324 3442 6.553100 ACTCCCTCTGTGAAGGAATATAAGAG 59.447 42.308 0.00 0.00 38.87 2.85
3325 3443 6.444704 ACTCCCTCTGTGAAGGAATATAAGA 58.555 40.000 0.00 0.00 38.87 2.10
3326 3444 6.739331 ACTCCCTCTGTGAAGGAATATAAG 57.261 41.667 0.00 0.00 38.87 1.73
3327 3445 7.130099 TGTACTCCCTCTGTGAAGGAATATAA 58.870 38.462 0.00 0.00 38.87 0.98
3328 3446 6.679542 TGTACTCCCTCTGTGAAGGAATATA 58.320 40.000 0.00 0.00 38.87 0.86
3329 3447 5.529289 TGTACTCCCTCTGTGAAGGAATAT 58.471 41.667 0.00 0.00 38.87 1.28
3330 3448 4.942944 TGTACTCCCTCTGTGAAGGAATA 58.057 43.478 0.00 0.00 38.87 1.75
3331 3449 3.791320 TGTACTCCCTCTGTGAAGGAAT 58.209 45.455 0.00 0.00 38.87 3.01
3332 3450 3.254093 TGTACTCCCTCTGTGAAGGAA 57.746 47.619 0.00 0.00 38.87 3.36
3333 3451 2.992847 TGTACTCCCTCTGTGAAGGA 57.007 50.000 0.00 0.00 38.87 3.36
3334 3452 4.466370 TGTTATGTACTCCCTCTGTGAAGG 59.534 45.833 0.00 0.00 36.08 3.46
3335 3453 5.661056 TGTTATGTACTCCCTCTGTGAAG 57.339 43.478 0.00 0.00 0.00 3.02
3336 3454 6.620877 ATTGTTATGTACTCCCTCTGTGAA 57.379 37.500 0.00 0.00 0.00 3.18
3337 3455 6.895756 ACTATTGTTATGTACTCCCTCTGTGA 59.104 38.462 0.00 0.00 0.00 3.58
3338 3456 7.113658 ACTATTGTTATGTACTCCCTCTGTG 57.886 40.000 0.00 0.00 0.00 3.66
3339 3457 7.837689 TGTACTATTGTTATGTACTCCCTCTGT 59.162 37.037 0.00 0.00 37.85 3.41
3340 3458 8.234136 TGTACTATTGTTATGTACTCCCTCTG 57.766 38.462 0.00 0.00 37.85 3.35
3341 3459 8.060075 ACTGTACTATTGTTATGTACTCCCTCT 58.940 37.037 0.00 0.00 37.85 3.69
3342 3460 8.235359 ACTGTACTATTGTTATGTACTCCCTC 57.765 38.462 0.00 0.00 37.85 4.30
3343 3461 8.605325 AACTGTACTATTGTTATGTACTCCCT 57.395 34.615 0.00 0.00 37.85 4.20
3344 3462 7.924947 GGAACTGTACTATTGTTATGTACTCCC 59.075 40.741 0.00 0.00 37.85 4.30
3345 3463 8.693625 AGGAACTGTACTATTGTTATGTACTCC 58.306 37.037 0.00 0.00 37.18 3.85
3363 3481 5.944007 ACACTTTGTGTTTAGAAGGAACTGT 59.056 36.000 0.00 0.00 45.08 3.55
3421 3539 6.826668 TCGGCCAATTCTAAGATTGAGAATA 58.173 36.000 2.24 0.00 41.71 1.75
3429 3547 3.933861 AACCTCGGCCAATTCTAAGAT 57.066 42.857 2.24 0.00 0.00 2.40
3430 3548 3.244770 ACAAACCTCGGCCAATTCTAAGA 60.245 43.478 2.24 0.00 0.00 2.10
3431 3549 3.081804 ACAAACCTCGGCCAATTCTAAG 58.918 45.455 2.24 0.00 0.00 2.18
3433 3551 2.039216 TCACAAACCTCGGCCAATTCTA 59.961 45.455 2.24 0.00 0.00 2.10
3435 3553 1.200020 CTCACAAACCTCGGCCAATTC 59.800 52.381 2.24 0.00 0.00 2.17
3436 3554 1.247567 CTCACAAACCTCGGCCAATT 58.752 50.000 2.24 0.00 0.00 2.32
3437 3555 0.609131 CCTCACAAACCTCGGCCAAT 60.609 55.000 2.24 0.00 0.00 3.16
3438 3556 1.228124 CCTCACAAACCTCGGCCAA 60.228 57.895 2.24 0.00 0.00 4.52
3439 3557 2.429930 CCTCACAAACCTCGGCCA 59.570 61.111 2.24 0.00 0.00 5.36
3441 3559 0.534203 TTCACCTCACAAACCTCGGC 60.534 55.000 0.00 0.00 0.00 5.54
3442 3560 1.226746 GTTCACCTCACAAACCTCGG 58.773 55.000 0.00 0.00 0.00 4.63
3444 3562 1.604278 GCTGTTCACCTCACAAACCTC 59.396 52.381 0.00 0.00 0.00 3.85
3447 3565 1.268743 GCTGCTGTTCACCTCACAAAC 60.269 52.381 0.00 0.00 0.00 2.93
3448 3566 1.024271 GCTGCTGTTCACCTCACAAA 58.976 50.000 0.00 0.00 0.00 2.83
3449 3567 0.819259 GGCTGCTGTTCACCTCACAA 60.819 55.000 0.00 0.00 0.00 3.33
3451 3569 0.321671 TAGGCTGCTGTTCACCTCAC 59.678 55.000 0.00 0.00 33.60 3.51
3453 3571 2.185004 TTTAGGCTGCTGTTCACCTC 57.815 50.000 0.00 0.00 33.60 3.85
3454 3572 2.887151 ATTTAGGCTGCTGTTCACCT 57.113 45.000 0.00 0.00 36.27 4.00
3456 3574 4.156556 TGATGAATTTAGGCTGCTGTTCAC 59.843 41.667 0.00 0.00 0.00 3.18
3457 3575 4.334552 TGATGAATTTAGGCTGCTGTTCA 58.665 39.130 0.00 3.15 0.00 3.18
3458 3576 4.970662 TGATGAATTTAGGCTGCTGTTC 57.029 40.909 0.00 0.00 0.00 3.18
3529 3949 5.034152 ACAAGCAATAAACAAACTGTCACG 58.966 37.500 0.00 0.00 0.00 4.35
3542 3962 5.931146 CAGCCCAATTTTGTACAAGCAATAA 59.069 36.000 15.15 5.32 0.00 1.40
3544 3964 4.317488 CAGCCCAATTTTGTACAAGCAAT 58.683 39.130 15.15 8.43 0.00 3.56
3547 3967 2.068519 GCAGCCCAATTTTGTACAAGC 58.931 47.619 8.56 7.71 0.00 4.01
3550 3970 1.000731 GCAGCAGCCCAATTTTGTACA 59.999 47.619 0.00 0.00 33.58 2.90
3551 3971 1.000731 TGCAGCAGCCCAATTTTGTAC 59.999 47.619 0.00 0.00 41.13 2.90
3554 3974 1.595466 TTTGCAGCAGCCCAATTTTG 58.405 45.000 0.00 0.00 41.13 2.44
3589 4009 9.435688 GTTTTCCAGCTGGTATGATTTAATTTT 57.564 29.630 31.58 0.00 36.34 1.82
3698 4119 8.865244 TCTACCTAATATTAAAGGGAGGTGTT 57.135 34.615 14.27 0.00 43.22 3.32
3758 4179 7.071321 ACCTAATATTAAAGGGAGGTGTCTCTG 59.929 40.741 8.77 0.00 39.86 3.35
3804 4225 9.740710 AAAAGTAATAGACAAAGCAGTCCTATT 57.259 29.630 0.00 0.00 39.34 1.73
3806 4227 8.154856 ACAAAAGTAATAGACAAAGCAGTCCTA 58.845 33.333 1.03 0.00 39.34 2.94
3835 4256 6.099159 AGCTCCTACCGAAGAATTTATACC 57.901 41.667 0.00 0.00 0.00 2.73
3836 4257 7.314393 CCTAGCTCCTACCGAAGAATTTATAC 58.686 42.308 0.00 0.00 0.00 1.47
3837 4258 6.436532 CCCTAGCTCCTACCGAAGAATTTATA 59.563 42.308 0.00 0.00 0.00 0.98
3838 4259 5.246429 CCCTAGCTCCTACCGAAGAATTTAT 59.754 44.000 0.00 0.00 0.00 1.40
3839 4260 4.587684 CCCTAGCTCCTACCGAAGAATTTA 59.412 45.833 0.00 0.00 0.00 1.40
3840 4261 3.388350 CCCTAGCTCCTACCGAAGAATTT 59.612 47.826 0.00 0.00 0.00 1.82
3841 4262 2.966516 CCCTAGCTCCTACCGAAGAATT 59.033 50.000 0.00 0.00 0.00 2.17
3842 4263 2.599677 CCCTAGCTCCTACCGAAGAAT 58.400 52.381 0.00 0.00 0.00 2.40
3843 4264 2.027949 GCCCTAGCTCCTACCGAAGAA 61.028 57.143 0.00 0.00 35.50 2.52
3844 4265 0.467659 GCCCTAGCTCCTACCGAAGA 60.468 60.000 0.00 0.00 35.50 2.87
3845 4266 1.465200 GGCCCTAGCTCCTACCGAAG 61.465 65.000 0.00 0.00 39.73 3.79
3846 4267 1.457079 GGCCCTAGCTCCTACCGAA 60.457 63.158 0.00 0.00 39.73 4.30
3847 4268 2.197875 GGCCCTAGCTCCTACCGA 59.802 66.667 0.00 0.00 39.73 4.69
3848 4269 2.077842 TAGGGCCCTAGCTCCTACCG 62.078 65.000 28.66 0.00 42.22 4.02
3849 4270 0.542467 GTAGGGCCCTAGCTCCTACC 60.542 65.000 32.77 13.84 46.57 3.18
3850 4271 3.054679 GTAGGGCCCTAGCTCCTAC 57.945 63.158 32.77 17.51 46.43 3.18
3851 4272 1.859234 GGTAGGGCCCTAGCTCCTA 59.141 63.158 41.56 18.35 42.22 2.94
3852 4273 2.615773 GGTAGGGCCCTAGCTCCT 59.384 66.667 41.56 17.46 42.22 3.69
3853 4274 2.918276 CGGTAGGGCCCTAGCTCC 60.918 72.222 43.05 33.11 42.22 4.70
3854 4275 2.733475 ATCCGGTAGGGCCCTAGCTC 62.733 65.000 43.05 28.19 42.80 4.09
3855 4276 2.733475 GATCCGGTAGGGCCCTAGCT 62.733 65.000 43.05 31.88 42.80 3.32
3856 4277 2.203803 ATCCGGTAGGGCCCTAGC 60.204 66.667 40.13 40.13 41.90 3.42
3857 4278 0.702902 TAGATCCGGTAGGGCCCTAG 59.297 60.000 32.77 20.74 38.33 3.02
3858 4279 0.702902 CTAGATCCGGTAGGGCCCTA 59.297 60.000 28.66 28.66 38.33 3.53
3859 4280 1.465623 CTAGATCCGGTAGGGCCCT 59.534 63.158 31.35 31.35 38.33 5.19
3860 4281 1.609794 CCTAGATCCGGTAGGGCCC 60.610 68.421 16.46 16.46 38.33 5.80
3861 4282 4.115270 CCTAGATCCGGTAGGGCC 57.885 66.667 8.46 0.00 38.33 5.80
3864 4285 0.037303 TACGCCCTAGATCCGGTAGG 59.963 60.000 9.24 9.24 37.40 3.18
3865 4286 1.451067 CTACGCCCTAGATCCGGTAG 58.549 60.000 0.00 0.00 0.00 3.18
3866 4287 0.037303 CCTACGCCCTAGATCCGGTA 59.963 60.000 0.00 0.00 0.00 4.02
3867 4288 1.228490 CCTACGCCCTAGATCCGGT 60.228 63.158 0.00 0.00 0.00 5.28
3868 4289 0.826672 AACCTACGCCCTAGATCCGG 60.827 60.000 0.00 0.00 0.00 5.14
3869 4290 0.314302 CAACCTACGCCCTAGATCCG 59.686 60.000 0.00 0.00 0.00 4.18
3870 4291 1.411041 ACAACCTACGCCCTAGATCC 58.589 55.000 0.00 0.00 0.00 3.36
3871 4292 2.557490 CCTACAACCTACGCCCTAGATC 59.443 54.545 0.00 0.00 0.00 2.75
3872 4293 2.595238 CCTACAACCTACGCCCTAGAT 58.405 52.381 0.00 0.00 0.00 1.98
3873 4294 1.410648 CCCTACAACCTACGCCCTAGA 60.411 57.143 0.00 0.00 0.00 2.43
3874 4295 1.038280 CCCTACAACCTACGCCCTAG 58.962 60.000 0.00 0.00 0.00 3.02
3875 4296 0.397535 CCCCTACAACCTACGCCCTA 60.398 60.000 0.00 0.00 0.00 3.53
3876 4297 1.688187 CCCCTACAACCTACGCCCT 60.688 63.158 0.00 0.00 0.00 5.19
3877 4298 1.266867 TTCCCCTACAACCTACGCCC 61.267 60.000 0.00 0.00 0.00 6.13
3878 4299 0.177373 CTTCCCCTACAACCTACGCC 59.823 60.000 0.00 0.00 0.00 5.68
3879 4300 0.177373 CCTTCCCCTACAACCTACGC 59.823 60.000 0.00 0.00 0.00 4.42
3880 4301 1.755380 CTCCTTCCCCTACAACCTACG 59.245 57.143 0.00 0.00 0.00 3.51
3881 4302 2.117051 CCTCCTTCCCCTACAACCTAC 58.883 57.143 0.00 0.00 0.00 3.18
3882 4303 1.009183 CCCTCCTTCCCCTACAACCTA 59.991 57.143 0.00 0.00 0.00 3.08
3883 4304 0.253207 CCCTCCTTCCCCTACAACCT 60.253 60.000 0.00 0.00 0.00 3.50
3884 4305 2.308185 CCCTCCTTCCCCTACAACC 58.692 63.158 0.00 0.00 0.00 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.