>input_sequence_41396
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-------------------------------------------------------ATGTCGCCGGCGACGGCGAGAGGCG
GTGCCCAGGAGGACTACCAGCCCGGCGAAGCCGGCGTGGACAAGGACGGCGGCGCCAAGGAAGGGAAGGGCACGTGGAGA
CACGCGGCGTTCCACGTGGCGACGACGATCGCCACGCCGGCAGCCTACGCTCCCCTGCCCTTTGCTCTTGCATCCCTGGG
CTGGCCTCTGGGTTAGCAGCG------------------------------------------CCATA------------
----TGGTGTAGATTCTCTGGTTGGTTATTTTT-GATCGGGTG--ATTAGCAGTTCTGTTTTTCCCACAGGTGTTTGCTG
CTTGGTGATAGGGACGCTGGTCACCTGGTGTTCGAGCCTGGCCGTTGCCTCACTGTGGCAGTGGAACGGAGAGAAGCACA
CCAGCTACCGGCTGCTCGCACAAAGCATATTTGGTCAGTGCAATTTTTTCTTCCAACAAATAGT---------TACCATC
TGACGATACTGTTAACTGCAGAAACCTTTTTTATTGTTGCAAAAGAAAGTTACTGAGAGAAATGTTCTTTTGATCATTTA
ACTGTAATTCTCATCAATGGTGCACTTATGATTCAACAAGC------AACTGTTAACATCACATCAGTTTGTGAAAATTT
ACCTTTGATAGTGACTCTGTACTTTGTTGATCAGGTCCATGGGGCTACTGGTATGTGTCATTCTTCCAGCAAGTGGCCTC
GGTTGGCAACAACATTGCGATCCAGATTGCGGCCGGCAGCAGCCTCAAGGCCGTCTACAAGCACTACTACGCCGCCGACC
ACGGCGCGATGACGCTGCAGCACTTCATCCTCCTCTTCGGCATGCTCGAGCTGTTTCTCTCGCAGCTTCCTGACATCCAT
TCGCTCCGGTGGGTGAATGCTACCTGCACTGCTTCCACCATTGGGTTTGCAGGGACGGCCATCGGTGTCACGATATACGA
TGGTAAAATTCAGTAAATTTTTATTCTGCATACATAAAGTACTGAAATTACTGAAGATGAAAGGAATCGACG--GCAT--
-------------CCTCTACTGCAGGATATCGGATTGACCGAAATGATGTGGGTTACAGTCTGCAAGGAAGCACCGCAAC
CAAGGTCTTCAGAGGTTTCAATGCATTGGGCACAATAGCCTTCTCATTTGGTGACGCAATGCTGCCAGAAATCCAGGTGC
CCATCTGAAA-TTCTGTCC--ATATCGATGAACTTAGTGTACAAACAATCATTGTTTGCATAAAATTGGCTGAAATGCAG
AGCACTGTGCGAGAACCGGCAACAACAAACATGTACAAGGGTGTGTCGACGGCGTACACATTGATCGTCGTGTCCTACTG
GACACTGGCATTCAGTGGCTATTGGGCATTCGGCTCTGGAGTCCAGCCATACATCTTGTCCTCCCTGACCGTTCCAAGAT
GGGCAATTGTAATGGCAAACATATTTGCAGTTGTTCAGATCACAGGTTGCTTTCAGGTAACTGTAACTTATGGCAAACCT
CCTACTTCCATCAGGAAATTCTTGCCAACCATCCAGTAACTAACTCTACTTCTTCTTCTTCTTCACAAAGATATACTGCA
GGCCGACATACGCGCACTTCGAAGAGCGCATTCAGGCGAAGAATATGGCGTACAGAGCATGGCTGTGGCGACTGATGTAC
ACCTCTGCATACATGGCGACGATCACCCTTGTTGCCGCCGCAATGCCATTCTTTGGGGACTTTGTATCAGTTTGTGGAGC
GGTTGGGTTCACCCCACTGGACTTTGTGCTGCCTGCATTAGCATTTCTGAAGGCTGGGAAGCTGCCCAAAAACCTGGGGC
TGCGGCGTACCGTCAAGGCCCTTTGCTGTGCCGTCGCCGTCTTGTTCTCTGCCATCGGAGTTCTTGCATGCATTGGAGCC
ATCAGAGCAATTGTGCTCGACGTCAAGACCTACAAGTTCTTCCATGACATGTGA--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---
>chr3D_1_TraesCS3D01G104600
GAAGGCCTCCAAAAGGCAGGAAGGGGGGCCGCCACCCCGCCCCGACGCGCCGGCGAGAGCACCGAGGCATAGCCCAAGAG
CTCGTCGGTGCCGTCACCACGGCAGCAGCCGCCGGCAACGCAGCACCATCCAGAGCACGCGCGTGGAGGAGCCTCCAGAT
GGCTGGAAGGGGGGCCGCCACCCCGCCCCGACGCACCGGTGAGAGCACCGGGCCGCAGCCCAGTGACCCGTCGACGCCGA
TACCTCGGCAGCTGCCGCCGGAGACGCAGCCCTGGAGAGCACCGCCGCAGAGCCCGCAACGACGCATCACCGGAGGGCGA
GCCTCCCTCCACCGCGAGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATGAA
GTTGTGACTTTCTTACATAAATAAAAGGAGTGCTTTCCTAGTTGCCATGTCTATTTTTTCATGGGGATGTTATTAAGTTG
ACATGACATTTTTCAGTTCAAAATCCTTTTTTCTGTTGTT---------CAGTCAAAATGAAATGAACTGAATCTTTGTT
TAGTCCTTGGTAATAATATATGGCTCTAACTTTCCTCACAAAGCAATAGCATATGCTTGGAAAGAAGCGGTTAGTTTTTG
TTTTCCCATTCCAAAGCATGTATTCCGTTTCCACGCTACTCCAATCCAA-TACGAGCCCATCTTTCTCCTCTTCTGGCTT
CTGCTCTTCGATCGGTGCAGAAACCGCCTACGTCAACACAAGATAAGAGGCGTGACATAAGCTACTGGATCACTCGCTCT
CAAGCTCTTCTTACTCCA-----AAGTCCAGTGAAGAGAAGCAGCAGCAGTGGGCATGTCGCCGGCGACGGCGAGAGGCG
GTGCCCAGGAGGACTACCAGCCCGGCGAAGCCGGCGTGGACAAGGACGGCGGCGCCAAGGAAGGGAAGGGCACGTGGAGA
CACGCGGCGTTCCACGTGGCGACGACGATCGCCACGCCGGCAGCCTACGCTCCCCTGCCCTTTGCTCTTGCATCCCTGGG
CTGGCCTCTGGGTTAGCAGCG------------------------------------------CCATA------------
----TGGTGTAGATTCTCTGGTTGGTTATTTTT-GATCGGGTG--ATTAGCAGTTCTGTTTTTCCCACAGGTGTTTGCTG
CTTGGTGATAGGGACGCTGGTCACCTGGTGTTCGAGCCTGGCCGTTGCCTCACTGTGGCAGTGGAACGGAGAGAAGCACA
CCAGCTACCGGCTGCTCGCACAAAGCATATTTGGTCAGTGCAATTTTTTCTTCCAACAAATAGT---------TACCATC
TGACGATACTGTTAACTGCAGAAACCTTTTTTATTGTTGCAAAAGAAAGTTACTGAGAGAAATGTTCTTTTGATCATTTA
ACTGTAATTCTCATCAATGGTGCACTTATGATTCAACAAGC------AACTGTTAACATCACATCAGTTTGTGAAAATTT
ACCTTTGATAGTGACTCTGTACTTTGTTGATCAGGTCCATGGGGCTACTGGTATGTGTCATTCTTCCAGCAAGTGGCCTC
GGTTGGCAACAACATTGCGATCCAGATTGCGGCCGGCAGCAGCCTCAAGGCCGTCTACAAGCACTACTACGCCGCCGACC
ACGGCGCGATGACGCTGCAGCACTTCATCCTCCTCTTCGGCATGCTCGAGCTGTTTCTCTCGCAGCTTCCTGACATCCAT
TCGCTCCGGTGGGTGAATGCTACCTGCACTGCTTCCACCATTGGGTTTGCAGGGACGGCCATCGGTGTCACGATATACGA
TGGTAAAATTCAGTAAATTTTTATTCTGCATACATAAAGTACTGAAATTACTGAAGATGAAAGGAATCGACG--GCAT--
-------------CCTCTACTGCAGGATATCGGATTGACCGAAATGATGTGGGTTACAGTCTGCAAGGAAGCACCGCAAC
CAAGGTCTTCAGAGGTTTCAATGCATTGGGCACAATAGCCTTCTCATTTGGTGACGCAATGCTGCCAGAAATCCAGGTGC
CCATCTGAAA-TTCTGTCC--ATATCGATGAACTTAGTGTACAAACAATCATTGTTTGCATAAAATTGGCTGAAATGCAG
AGCACTGTGCGAGAACCGGCAACAACAAACATGTACAAGGGTGTGTCGACGGCGTACACATTGATCGTCGTGTCCTACTG
GACACTGGCATTCAGTGGCTATTGGGCATTCGGCTCTGGAGTCCAGCCATACATCTTGTCCTCCCTGACCGTTCCAAGAT
GGGCAATTGTAATGGCAAACATATTTGCAGTTGTTCAGATCACAGGTTGCTTTCAGGTAACTGTAACTTATGGCAAACCT
CCTACTTCCATCAGGAAATTCTTGCCAACCATCCAGTAACTAACTCTACTTCTTCTTCTTCTTCACAAAGATATACTGCA
GGCCGACATACGCGCACTTCGAAGAGCGCATTCAGGCGAAGAATATGGCGTACAGAGCATGGCTGTGGCGACTGATGTAC
ACCTCTGCATACATGGCGACGATCACCCTTGTTGCCGCCGCAATGCCATTCTTTGGGGACTTTGTATCAGTTTGTGGAGC
GGTTGGGTTCACCCCACTGGACTTTGTGCTGCCTGCATTAGCATTTCTGAAGGCTGGGAAGCTGCCCAAAAACCTGGGGC
TGCGGCGTACCGTCAAGGCCCTTTGCTGTGCCGTCGCCGTCTTGTTCTCTGCCATCGGAGTTCTTGCATGCATTGGAGCC
ATCAGAGCAATTGTGCTCGACGTCAAGACCTACAAGTTCTTCCATGACATGTGATCATAGTTAAGTTATATCAGGTTGCT
CTTGTGCATCAGTTCACTTATATGTAGGTTTGTGTGTGGCAGTGCTAGATGCCAG---GTAATATGCAATGTTATATACA
ATAGTACATGGGGACTCATTTTGTAAGTTGAGTCACATTTTTGAAACATGTATAGGATCAGAATCAAAACACAGACATCT
CAGACCAATC---AGTAAGTCTATAATCTATTGCCTACAAAAACAATTCGATGACCACATAAATCGATTTACAATTCCAG
GAAAAAAGATATCAAGAAAGCAACAAATAAGCATACCACTCCAATAGAAGAACCTAGAGCAAAGCACACATGATGGATGC
TGTCATATAAATTATGAACATCATACTCCCTCCGTAAAGAAATATAAGAGCGTTTACATCACTAAAGTAGTGATCTAAAC
GCTCTTATATTCCTTCACAGAGGGAGTACATAACAATAGTACAGTTCCTTCTAAACACAAAGTGTAGGACTAGGACACAT
TAAATTTCGCCAATAATTTATTCTCAATCTTAGAATTGGCCGAGGTTTGTGAGGTG------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------AACAGCAGCCTAAATTCATCAATCTTAGAATTGGCCGAGGTT
TGTGAGGTGAATGAGGAGAAAGGTTTCACGTGACAGTTTGTTTATTGCTTGTACAAAATTGGGCTGCTGCAAATGGTTTG
GAAGAAATAAAATTAAATCATACCAGCTGG-AAAACATTTTGAAAACTGCCACTTTCCTGGTCCCAAATGTCAGTACTGC
TAAATTTGGTCTAAATATCATGGTCAAGTGTCGAGACAAACACCTCCCTTTAATATTAGGTAGAGACAGATATTAAGTTA
GAGATGTGAAAGTGTCGACAGAGACACCTCCCTTTAATATTAGGTTAGGTAGAGATGTGAAACGAATAGGACTGCTTTGT
CTATTACTTTTGTTAGGTATAAATTCTTCGGTAGGAGCTAGGGCCCTACCGGATCTAGGGCGTAGGTTGTAGGGGAAGGA
GGG
>chr3B_562
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-TTGTGATTTCCTTGCATAAGTAAAAGGACTGTTTTCGTAGTTGCCATGTCTATTTTTTCATGGGGTTGTTATTAAGTTG
ACATGGCATTTCTCAGTTGAGAATCACTTTTTCTGTTGGTTTTTTTGTGCAGTCAAAATGAAATGAACTGAATTTTTGTT
TAGTCCTTGGTAATAATATATGGCTC------------------AATAGCATATGCTTGGAAAGAAGCGGTTGGTTTTTC
TTTTCCCATTCCAAAGCATGTATTCCGTTTCCAC--TACTACAATCCAAGTACAAAACCGACGTTCTCCGCATCTGCTCT
TCG-----------GTGCAGAAACCGCCTGGGTCAACACAAGATAAGAGGCGTGACATAAGCTACTGGATCACTCGCCCT
CAAGCTCTTCTTACTTAAAGAGTCCAAGT---------------------------------------------------
-----------------------------------------------GGCGCCGCCGAGGAAGGGAAGGGCACGTGGAGG
CACGCGGCGTTCCACGTGGTGACGATGATCGCCAGATCGGTTGCCTACGCTCCCCTGCCCTTTGCCCTTGCGTCCCTGGG
CTGGCCTCTGGGTTAGCAGCG------------------------------------------CCATA------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---
>chr3A_767
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------CTTGGAAAGAAGCGGTTGGTTTTCG
TTGTTCCATGCCAAAGCATGTATTCCATTTCCACGCTACTCCAATATGAGAT-GAGTCCATCTTTCTCCGCTTCCGTTCT
TCA-----------GTGCAGAAACCGCCTGGGTCAACACCAGATAAGAGGCGTGACATAAGGCAGCGGATCACTCGCCCT
CAAGCTCTTCTTAGTTCTTACTGAAGTCCAGTGAAGAGGAGCAGCAGCAGTGGGCATGTCACCGGCGACGGCGAGAGGCG
GTGCCCAGGAGGAC---CAGGCCGGCGAAGCCGGCGTGGACAAGGACGGCGCCGCCGAGGGAGGGAAGGGCACGTGGAGG
CACGCGGCGGTCCACGTGGCGACGACGATCGCCACGCCGGCAGCCTACGCTCCCTTGCCCTTTGCCCTCGCATCCTTGGG
CTGGCCTCTGGGTAAATTTTCACAAACCGATGTGCTATTAACAATCGCCATACTGTTTATTTACCGTA------------
----CGGTGTAAATTCTCTGGTTGGTTATTTTTTGATCGGGTG--ATTAGCGGCTCTGTTTTTCCCACAGGTGTTTGCAG
TTTGGTGATAGGGACGCTGGTCACCTGGTGTTCTAGCCTGGCCGTTGCCTCGCTGTGGCAGTGGAACGGGGAGAAGCACA
CCAGCTACCGGCTGCTCGCACAAAGCATATTTGGTCAGTGCAATTTTCC--TCCAACAAATAG---TAGTTCTTACCATC
TGACGAATACTGTAACTGCAGAAACCTTTTTTATTGTTGCAAAAGAAAGTTGCTGAGAGAAATGCTCTTTTGATCATTTA
ACTGCAATTCTCGTCAATGGTGCACTTATGATTCAACATCGACTGTTAAGTGTTAACAGCACAATAGTTGGTGAAAATTT
ACCTTGAG-AGTGACTCTGTACTTTGTTGATCAGGTCCATGGGGCTACTGGTATGTGTCGTTCTTCCAGCAAGTGGCGTC
GGTTGGCAACAACATTGCGATCCAGATTGCGGCCGGCAGCAGCCTCAAGGCCGTCTACAAGCACTACTACGCCGCCGACC
ATGGCGCGATGACGCTGCAGCACTTCATCCTCCTCTTCGGCGCGTTCGAGCTGTTTCTCTCGCAGCTTCCCGACATCCAT
TCGCTCCGGTGGGTGAATGCTACCTGCACTGCGTCCACCATTGGGTTTGCCGGGACAGCCATCGGTGTCACGATATACGA
TGGTAAAATTCAGTAAATTTTCAT----CATA----AAGTACTGAAATTGCTGAAGATATGAAACAATCTGACAGCATCC
TCTGCTGGCTACCGCACTACCGCAGGATATCGGGTTGACCGAAATGATGTTGGCTACAGCCTGCAAGGAAGCACCGGAAC
TAAGGTCTTCAGAGGTTTCAATGCACTGGGCACAATAGCCTTCTCATTTGGTGATGCAATGCTGCCAGAAATCCAGGTGC
CCACCTGAAAATTCAGTTGATGTATCGATGAATTAAGTGTACAATCAATCATTCCTTGTGTAAAACTGGCTGAAATGCAG
AGCACCGTGCGAGAACCGGCGACGACAAACATGTACAAGGGTGTCTCGACGGCGTACACATTGATCGTCGTGTCCTACTG
GACACTGGCATTCAGTGGCTATTGGGCATTTGGCTCTGAAGTCCAGCCATACATCTTGTCCTCCCTGACTGTCCCAAGAT
GGGCAATTGTAATGGCAAACATATTTGCAGTCATTCAGATCACAGGTTGCTTTCAGGTAACTGTAACTTATGGCAAACGT
GCTACTTCCATCAGAAGTTTCTTGGCAACCATCCAGTAACTAACTGTA------CCTCTTCTTCACAAAGATATACTGCA
GGCCGACATACGCGCACTTTGAAGAGCGCATTCAGGCGAAGAACACGGCGTACAGAGCATGGCTGTGGCGACTGATGTAC
ACCTCTGCATACATGGCGACGATCACCCTTGTTGCTGCCGCAATGCCATTCTTTGGGGACTTTGTATCAGTTTGTGGAGC
GGTTGGGTTCACCCCACTGGACTTTGTGCTGCCTGCATTGGCATTTCTCAAGGCCGGGAAGCTGCCCAAAAACCTGGGCC
TGCGGCGTACTGTCAAGGCCCTTTGCTGCTCCGGCGCCGTCTTGTTCTCTGTCATCGGAGTTCTTGCGTGCACTGGCGCC
ATCAGAGCAATTGCGCTCGATGTCAAGACCTACAAGTTCTTCCATGACATGTGATCATAGTTAAGTTATATCAGGTTGCT
CT-GTGCATCAGTTCATTTAGATGTAGGTTTGTTTGTGCCAGTGTTAGATGCCAGGTAGTAATATGCAATGTCATATACA
ATAGTACATGGGGACTCATTTTGTAAGTTGAGTCACATTTTTGAAACATATATAGGATCAGAATCAAAACACAGACATCT
CAGACATCTCAGAC--------------------------------TTCGATGACCACAGAAATCGACTTACAATTCAT-
GAAAAAAGATATCAAGAAAGCAACGAATAAGCATACCACTGTAATAGAAGAACCTAGAGCAAAGCATACATGATGGATGC
TGTCATATAAATCATGA-CATCA---------------------------------------------------------
--------------------------TACATAACAATAGTGCATTTCCTTCTAAACACAAAGTGTAGGACTAGGACACAT
TAAATTTCGTCAAGAATTGATTCTCATATTGAACTGAGCA---------------TTCTAAGGTCCGACAACCTAGTGGT
GTGAAATCTGTCTTCTGCAAACTCCTCTGACAATTTCAGGTCAATGCCTGCAACAGCATTGACACCGAACCTTTTCACCC
TGTCACTGAGAAGAACTGTTATTATAGAGTCTGAGATATGGCTGGGTGCACCAGAAACAACCTTGAAGAGGGCCTCTCTC
GGCAAAATCGGCTGTGCGGTCGGTACTTACTACCATGCCAAGGTAGTAGATGAGAACTTCATTCATGTAGCCATGTGCAT
GTTCTGGAGTTTCCTCTGCTGTTCAATTGATGCTGGTCAA---CAGCCTAAATTCATCAATCTTAGAATTGGCCAAGGTT
TGTGAGGTGAATGAGGAGAAAGGTTTCATGTGAA--TTTGTGTCTTACTCATATAAAATTGGGCTGCTGCAAATGGTTTC
AAATAAATTAAATTAAATCATACCAGCTGG-AAAACATTTTGAAAACTGCCACTTTCCTGGTCCCAAATGTCACTACTGC
TAAATTTGGTCTAAATATCATGGTCAAGTGTCGAGACAGACACCTCCCTTTAATATTAGGTAGAGACAGATATTAAGTTA
GAGATGTGAAAGTGTCGAGAGAGACACCTCACTTTAATATTAGGTTAGGTAGAGATGTGAAAC-----------------
--------------------------------------------------------------------------------
---
>chr3B_1152
--------------------------------------------------------------------------------
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----------------------------------------------ACGCTCCCCTGCCCTTTGCCCTCGCGTCCCTGGG
CTGGCCTCTGGGTTAGCAGCG------------------------------------------CCATACTGTTTATTTAC
CATATGATGTAAATTCTCTAGTTGGTTTTCTAT-GGATCCGGTGAATTAGCAGCTCTGTTTTTCCCACAGGTGTTTGCAG
CTTGGTCATAGGGACACTGGTCACCTGGTGTTCTAGCTTGGCCGTTGCCTCGCTGTGGCAGTGGAACGGAGAGAAGCACA
CCAGCTACCGGCTGCTTGCACAAAGCATATTTGGTCAGTGCAATTTTTTCTTCCAACAAATAGTACTAGTTCTTACCATC
TGACGA----------TGCTGTAACTTTTTTTATTGTTGTAAAAGGAAGTTACTGAGAGAAATGTTCTTTTGATCATTTA
ACTGTAATTCAAATCAATGGTGCACTTATGATTCAACATCC-------ACTGTTAACAGCACAATAGTTTGTGAAAAATT
ACCTTGAG-AGTGACTCTGTACTTTGTTGA--AGGTCCCTGGGGCTACTGGTATGTGTCATTCTTCCAGCAAGTGGCGTC
GGTTGGCAACAACATTGCGATCCAGATTGCGGCCAGCAGCAGCCTCA-GGCCGTGTACAAGCACTACTATGCCACCGACC
ATGGCGCGATGACGCTGCAGCACTTCATCCTCCTCTTCGGCGCGCTCGAGCTGCTTCTCTCCCAGCTTCCCGACATCCAT
TCGCTCCGGTGGGTGAATGCTACCTGCACTGCCTCCACCATTGGGTTTGCTGGGACAGCCATCGGTGTCACGATATATGA
CGGTAAAATTCAGTAAATTTTCATTCTGCATA----AAGTACTAAAATTGCTGAATATATGAAAAAATCTGACAGCAT--
-------------GCTCTACCGCAGGATATCGGATTAACCGAAATGATGTTGGTTACAGTCTGCAAGGAAGCACCGCAAC
CAAGGTCTTCAGAGGTTTCAATGCACTGGGCACAATAGCCTTCTCATTTGGTGATGCAATGCTGCCAGAAATCCAGGTGC
CCACCTGAGA-TTCAGTTGATATATTGATGAATTAAGTGTGCAATCAACCATTCTTTGCGTAAAACTGGCTGAAATGCAG
AGCACCGTGCGAGAACCGGCGACGACAAACATGTACAAGGGTGTTTCGACGGCGTACACATTGATCGTCATGTCCTACTG
GACACTGGCATTCAGTGGCTATTGGGCATTCGGCTCCGGAGTCCAGCCATACATCTTGTCCTCTCTGACTGTTCCAAGAT
GGGCAATTGTAATGGCAAACATATTTGCAGTTGTTCAGATCACAGGTTGCTTTCAGGTAACTGTAACTTATGCCAAACCT
CCTACTTTCATCAGGAATTTCTTGGCAACCATCCAGTAACTAACTCTA------CTTCTTCTTCACAAAGATATACTGCA
GGCCGACATATGCGCACTTTGAAGAGCGCATTCAGGCAAAGAATATGATGCACAGAGCATGGCTGTGGCGACTGATGTAC
ACCTCTGCATACATGGCGACGATCACCCTCGTTGCCGCCGCAATGCCATTCTTTGGGGACTTTGTATCAGTTTGTGGAGC
GGTTGGGTTCACCCCACTGGACTTTGTGCTGCCAGCATTGGCATTTCTCAAGGCTGGGAAGCTGCCCAAGAACCTGGGAC
TGCGGCGTACTGTCAAGGCCCTTTGCTGCGCCGGCGCCGTCTTGTTCTCTGTCATCGGGGTTCTTGCATGCATTGGCGCC
ATCAGAGCAATTGCGCTCGATGTCAAGACCTACAAGTTCTTCCATGACATGTGATCATAGTTAAGTTATATGAGGTTGCT
CTTGTGCGTCAGCTCACTTAGATGTAGCTTTTTTTGTGTGAGTGCTAGATGCCAGGTA-TAATATGCAATGTTATATACA
ATAGTACAATGGGACTCATTTTATAAGTTGAGTCACATTTTTGAGACATATATAGGATCAGAATCAAAACACAGATATCT
CATACCAATCCGAAGTAAGTCTATAATCTATTGCCTACAAAAACAATTCGATGACCACATAAATCGACTTACAATTCCAG
GAAAAAAGATATCAAGAAAGCAACAAATAAGCATACCACTGCAATAGAAGAACCTAGAGCAAAGCATACATGATGGATGC
TGTCATATAAATTATGAACATCA---------------------------------------------------------
--------------------------TACATAACAATAATGCAGTTCCTTCTAAACACAAAGTGCAGGAC----------
TAAAATTCGTCAAGAATTGATTCTCATATTGAACTGAGCACAAGCAGTTTATGTATTCTAAGTTCCGACAACCCAGTGGT
GTGAAATCTGTCTTCTGCAAACTCCTCTGACAATTTCAGGTAAATGCCCACAACAACATTGACACCGAGCCTTTTCACCC
TGTCACTGAGAAGAACTGTTATTGTAGAGCCTGAAATGTGGCTGGGTGCACCAGAAACGACCTTGAAGAGGGCCTTGCTC
GGCAAAATCGGCTGTGCGGTCGGTGCGCCAGAAACGACCTTGAAGAGGACCTTG--------------------------
---------------CTGCTGTCCAATTGATGCTGGTAAACAGCAGCCCAAATTCATCAATCTTAGAATTGGCCGAGGTT
TGTGAGGTGAATGAGGAGAAAGGTTTCATGTGACAGTTTGTGTCTTACTCATATAAAATTG--CTGCTGCAAATGGTTTC
AAAGAAATTAAATTAAATCATACCAGCTGGAAAAACATTTTGAAAACTGCCACTTTCCTGGTCCCAAATGTCAGTACTGC
TAAATTTGGTCTAAATATCATGGTCATGTGTCGACACAGACAGCTCCCTTTAATATTAGGCAGAGACAGATATTAAGTTA
GAGATGTGACAGTGTCGAGAGAGACACAGCCCTTTAATATTAG-----GTAGAGATGTGAAACGGACAGGACTAATTTGT
CTTTTACTTTTGTTA-----------------------------------------------------------------
---
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S------S--S---S-----S--------S--S----S----------------------------S-------------
-----S-----S------S-S----SS-----------S----------------------------------S------
--------------------------SSSSSSSSSSSSSSSSSS----------------------------S-------
--------------------------------------------------------S------------S------SSS-
SS-SSSSSSSSSSS---------------SS----------------------------------------------S--
---------------S----------------------S---------------------S-------------------
--------------SSS---S------------------------------S----S----------------------S
-----------------------------------------------------------------S--------------
--------------------------------------------------------------------------------
-----------S-----------------------------------------S------------------------S-
---------------------------------S-----------------S----------------------------
--------------------------------------------------------------------------------
------SSSSSS--------------------------------------------------------------------
--------------------------------------SS------------------S----SS---------------
-----SSSS--------------------------------------------------------------------S--
--------------------------------------------------------------------------------
-S---------------------------------------SS---------------------------S---------
--------------------------------S-----------------S-----S-----------------------
---------------------S----------SSSS-------------S--------SSS-SS--SSSSSS--------
-------------S------S-----------------------------S-----------------------------
-------------------------S----------------------------S-------------------------
---S----------S--SS-------------S-S---------S--------S-----S-----S--------------
-----S--------------S--S--------------------S-----------------------------------
---------------------------------------------------------------------S----------
--------------------------------------------------------------------------------
-----------------S------S-----------------------SSSSSS--------------------------
-------------------S------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------S--------S-----------------------------S-
----------S-----------------S----S-----------------S------------------------S---
-------------S------S-----------------------------------------------------------
--------------------S------------S----S-----------------------------------------
-------------------------------------------------S------------------------------
-------------------------------------------------------------------S------------
----------------------------------------S-------------------------S-------------
-----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS--------------S---------------------------------------
---------S---S----S-------SSS-S-SSSSS-SS-S--SSS-S-SS-SSS------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------S------------S-S--S--SS--S-------------------------S
S-------S-----------------------------------------------------------------------
--------------------------------------S-----------------------------------------
------------------S---------------------------------------------S-S------SS-----
--S------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS
>forward_894
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TGGCTT
CTGCTCTTCGATCG------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---
>reverse_1977
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------GGCCATCGGTGTCACGATAT----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---
>forward_1292
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------AGCAGCGC
CATATGGTGTAG--------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---
>reverse_2932
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------CCATCGGAGTTCTTGCATGC---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---
>forward_2244
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------CCAGAAATCCAGGTGC
CCAT----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_4285
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--------------------------------------------CCTACCGGATCTAGGGCGTA----------------
---
