Multiple sequence alignment - TraesCS3D01G104400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G104400 chr3D 100.000 2696 0 0 1 2696 56881009 56878314 0.000000e+00 4979
1 TraesCS3D01G104400 chr3D 87.258 1342 72 33 516 1813 56711413 56712699 0.000000e+00 1439
2 TraesCS3D01G104400 chr3D 84.733 1238 106 40 616 1813 56648166 56646972 0.000000e+00 1162
3 TraesCS3D01G104400 chr3D 92.593 783 46 6 1916 2696 56712960 56713732 0.000000e+00 1114
4 TraesCS3D01G104400 chr3D 86.474 658 73 11 1026 1677 588156144 588155497 0.000000e+00 708
5 TraesCS3D01G104400 chr3D 88.247 502 58 1 1184 1684 588078506 588079007 1.380000e-167 599
6 TraesCS3D01G104400 chr3D 94.340 106 6 0 4 109 134958281 134958176 2.150000e-36 163
7 TraesCS3D01G104400 chr3B 86.985 1237 72 35 625 1813 89375410 89376605 0.000000e+00 1310
8 TraesCS3D01G104400 chr3B 84.783 690 86 14 1026 1711 786511400 786510726 0.000000e+00 675
9 TraesCS3D01G104400 chr3B 88.755 498 56 0 1184 1681 786279440 786279937 6.380000e-171 610
10 TraesCS3D01G104400 chr3B 84.979 486 41 16 660 1131 89176568 89177035 5.260000e-127 464
11 TraesCS3D01G104400 chr3A 85.703 1217 85 34 674 1850 66165408 66166575 0.000000e+00 1201
12 TraesCS3D01G104400 chr3A 87.903 620 64 9 2048 2658 66167029 66167646 0.000000e+00 719
13 TraesCS3D01G104400 chr3A 88.423 501 58 0 1183 1683 718063763 718063263 2.970000e-169 604
14 TraesCS3D01G104400 chr3A 95.971 273 10 1 108 380 732979358 732979629 2.460000e-120 442
15 TraesCS3D01G104400 chr3A 81.267 363 62 4 109 469 35767353 35767711 3.400000e-74 289
16 TraesCS3D01G104400 chr3A 84.393 173 14 4 1866 2038 66166559 66166718 9.990000e-35 158
17 TraesCS3D01G104400 chr3A 92.079 101 6 2 510 609 66165054 66165153 1.010000e-29 141
18 TraesCS3D01G104400 chr7A 90.884 362 32 1 109 469 46321205 46320844 4.040000e-133 484
19 TraesCS3D01G104400 chr7A 90.055 362 35 1 109 469 46480937 46480576 4.060000e-128 468
20 TraesCS3D01G104400 chr4A 90.331 362 32 3 109 469 654381694 654381335 3.140000e-129 472
21 TraesCS3D01G104400 chr4A 90.055 362 35 1 109 469 654140578 654140217 4.060000e-128 468
22 TraesCS3D01G104400 chr4A 90.055 362 35 1 109 469 654619214 654618853 4.060000e-128 468
23 TraesCS3D01G104400 chr4A 89.503 362 36 2 109 469 654351247 654350887 8.800000e-125 457
24 TraesCS3D01G104400 chr4A 75.601 291 64 6 2169 2455 717816941 717817228 1.300000e-28 137
25 TraesCS3D01G104400 chr7D 89.547 287 29 1 109 394 43783286 43783000 1.970000e-96 363
26 TraesCS3D01G104400 chr7D 96.226 106 4 0 1 106 66408463 66408568 9.920000e-40 174
27 TraesCS3D01G104400 chr1B 77.778 279 56 5 2155 2430 542958849 542958574 1.660000e-37 167
28 TraesCS3D01G104400 chr4D 95.876 97 4 0 1 97 435850044 435849948 9.990000e-35 158
29 TraesCS3D01G104400 chr2D 75.207 242 51 9 2230 2466 118561114 118561351 3.670000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G104400 chr3D 56878314 56881009 2695 True 4979.00 4979 100.0000 1 2696 1 chr3D.!!$R2 2695
1 TraesCS3D01G104400 chr3D 56711413 56713732 2319 False 1276.50 1439 89.9255 516 2696 2 chr3D.!!$F2 2180
2 TraesCS3D01G104400 chr3D 56646972 56648166 1194 True 1162.00 1162 84.7330 616 1813 1 chr3D.!!$R1 1197
3 TraesCS3D01G104400 chr3D 588155497 588156144 647 True 708.00 708 86.4740 1026 1677 1 chr3D.!!$R4 651
4 TraesCS3D01G104400 chr3D 588078506 588079007 501 False 599.00 599 88.2470 1184 1684 1 chr3D.!!$F1 500
5 TraesCS3D01G104400 chr3B 89375410 89376605 1195 False 1310.00 1310 86.9850 625 1813 1 chr3B.!!$F2 1188
6 TraesCS3D01G104400 chr3B 786510726 786511400 674 True 675.00 675 84.7830 1026 1711 1 chr3B.!!$R1 685
7 TraesCS3D01G104400 chr3A 718063263 718063763 500 True 604.00 604 88.4230 1183 1683 1 chr3A.!!$R1 500
8 TraesCS3D01G104400 chr3A 66165054 66167646 2592 False 554.75 1201 87.5195 510 2658 4 chr3A.!!$F3 2148

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
136 137 0.034863 GGCATTCGGGTGGTTCCTAA 60.035 55.0 0.0 0.0 36.25 2.69 F
499 500 0.249398 TTAACGCCTCTCAGGAAGCC 59.751 55.0 0.0 0.0 37.67 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1335 1721 0.902516 AGGCGAAGAGGAAGCAGTCT 60.903 55.0 0.0 0.0 0.00 3.24 R
2397 3306 0.035152 ACGAGCAATGGAATGAGCCA 60.035 50.0 0.0 0.0 43.23 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.853924 ACAAACAATAAGTCTGGGCAAG 57.146 40.909 0.00 0.00 0.00 4.01
23 24 4.215109 ACAAACAATAAGTCTGGGCAAGT 58.785 39.130 0.00 0.00 0.00 3.16
24 25 4.649218 ACAAACAATAAGTCTGGGCAAGTT 59.351 37.500 0.00 0.00 0.00 2.66
25 26 5.128663 ACAAACAATAAGTCTGGGCAAGTTT 59.871 36.000 0.00 0.00 0.00 2.66
26 27 4.853924 ACAATAAGTCTGGGCAAGTTTG 57.146 40.909 0.00 0.00 0.00 2.93
27 28 4.215109 ACAATAAGTCTGGGCAAGTTTGT 58.785 39.130 0.00 0.00 0.00 2.83
28 29 4.649218 ACAATAAGTCTGGGCAAGTTTGTT 59.351 37.500 0.00 0.00 0.00 2.83
29 30 5.128663 ACAATAAGTCTGGGCAAGTTTGTTT 59.871 36.000 0.00 0.00 0.00 2.83
30 31 5.869649 ATAAGTCTGGGCAAGTTTGTTTT 57.130 34.783 0.00 0.00 0.00 2.43
31 32 4.551702 AAGTCTGGGCAAGTTTGTTTTT 57.448 36.364 0.00 0.00 0.00 1.94
32 33 4.123497 AGTCTGGGCAAGTTTGTTTTTC 57.877 40.909 0.00 0.00 0.00 2.29
33 34 3.769300 AGTCTGGGCAAGTTTGTTTTTCT 59.231 39.130 0.00 0.00 0.00 2.52
34 35 4.112634 GTCTGGGCAAGTTTGTTTTTCTC 58.887 43.478 0.00 0.00 0.00 2.87
35 36 4.023291 TCTGGGCAAGTTTGTTTTTCTCT 58.977 39.130 0.00 0.00 0.00 3.10
36 37 4.466015 TCTGGGCAAGTTTGTTTTTCTCTT 59.534 37.500 0.00 0.00 0.00 2.85
37 38 4.502962 TGGGCAAGTTTGTTTTTCTCTTG 58.497 39.130 0.00 0.00 38.60 3.02
38 39 4.221703 TGGGCAAGTTTGTTTTTCTCTTGA 59.778 37.500 7.28 0.00 38.06 3.02
39 40 5.104982 TGGGCAAGTTTGTTTTTCTCTTGAT 60.105 36.000 7.28 0.00 38.06 2.57
40 41 5.234972 GGGCAAGTTTGTTTTTCTCTTGATG 59.765 40.000 7.28 0.00 38.06 3.07
41 42 5.812127 GGCAAGTTTGTTTTTCTCTTGATGT 59.188 36.000 7.28 0.00 38.06 3.06
42 43 6.237915 GGCAAGTTTGTTTTTCTCTTGATGTG 60.238 38.462 7.28 0.00 38.06 3.21
43 44 6.237915 GCAAGTTTGTTTTTCTCTTGATGTGG 60.238 38.462 7.28 0.00 38.06 4.17
44 45 5.906073 AGTTTGTTTTTCTCTTGATGTGGG 58.094 37.500 0.00 0.00 0.00 4.61
45 46 4.935352 TTGTTTTTCTCTTGATGTGGGG 57.065 40.909 0.00 0.00 0.00 4.96
46 47 3.230134 TGTTTTTCTCTTGATGTGGGGG 58.770 45.455 0.00 0.00 0.00 5.40
47 48 3.230976 GTTTTTCTCTTGATGTGGGGGT 58.769 45.455 0.00 0.00 0.00 4.95
48 49 2.584835 TTTCTCTTGATGTGGGGGTG 57.415 50.000 0.00 0.00 0.00 4.61
49 50 1.741028 TTCTCTTGATGTGGGGGTGA 58.259 50.000 0.00 0.00 0.00 4.02
50 51 1.971149 TCTCTTGATGTGGGGGTGAT 58.029 50.000 0.00 0.00 0.00 3.06
51 52 1.561076 TCTCTTGATGTGGGGGTGATG 59.439 52.381 0.00 0.00 0.00 3.07
52 53 1.283029 CTCTTGATGTGGGGGTGATGT 59.717 52.381 0.00 0.00 0.00 3.06
53 54 1.281867 TCTTGATGTGGGGGTGATGTC 59.718 52.381 0.00 0.00 0.00 3.06
54 55 1.004628 CTTGATGTGGGGGTGATGTCA 59.995 52.381 0.00 0.00 0.00 3.58
55 56 1.297968 TGATGTGGGGGTGATGTCAT 58.702 50.000 0.00 0.00 0.00 3.06
56 57 2.486716 TGATGTGGGGGTGATGTCATA 58.513 47.619 0.00 0.00 0.00 2.15
57 58 2.172505 TGATGTGGGGGTGATGTCATAC 59.827 50.000 0.00 0.00 0.00 2.39
58 59 1.965414 TGTGGGGGTGATGTCATACT 58.035 50.000 0.00 0.00 0.00 2.12
59 60 2.274542 TGTGGGGGTGATGTCATACTT 58.725 47.619 0.00 0.00 0.00 2.24
60 61 3.455849 TGTGGGGGTGATGTCATACTTA 58.544 45.455 0.00 0.00 0.00 2.24
61 62 3.847184 TGTGGGGGTGATGTCATACTTAA 59.153 43.478 0.00 0.00 0.00 1.85
62 63 4.289934 TGTGGGGGTGATGTCATACTTAAA 59.710 41.667 0.00 0.00 0.00 1.52
63 64 5.044476 TGTGGGGGTGATGTCATACTTAAAT 60.044 40.000 0.00 0.00 0.00 1.40
64 65 5.299279 GTGGGGGTGATGTCATACTTAAATG 59.701 44.000 0.00 0.00 0.00 2.32
65 66 5.044476 TGGGGGTGATGTCATACTTAAATGT 60.044 40.000 0.00 0.00 0.00 2.71
66 67 5.299279 GGGGGTGATGTCATACTTAAATGTG 59.701 44.000 0.00 0.00 0.00 3.21
67 68 6.119536 GGGGTGATGTCATACTTAAATGTGA 58.880 40.000 0.00 0.00 0.00 3.58
68 69 6.038271 GGGGTGATGTCATACTTAAATGTGAC 59.962 42.308 6.83 6.83 40.18 3.67
96 97 8.489676 AGTTATGTCATATCTTGATGAGTCCT 57.510 34.615 0.00 0.00 36.51 3.85
97 98 9.593565 AGTTATGTCATATCTTGATGAGTCCTA 57.406 33.333 0.00 0.00 36.51 2.94
98 99 9.853555 GTTATGTCATATCTTGATGAGTCCTAG 57.146 37.037 0.00 0.00 36.51 3.02
99 100 9.813826 TTATGTCATATCTTGATGAGTCCTAGA 57.186 33.333 0.00 0.00 36.51 2.43
100 101 7.517614 TGTCATATCTTGATGAGTCCTAGAC 57.482 40.000 0.00 0.00 36.51 2.59
101 102 7.062957 TGTCATATCTTGATGAGTCCTAGACA 58.937 38.462 0.00 0.00 36.51 3.41
102 103 7.013750 TGTCATATCTTGATGAGTCCTAGACAC 59.986 40.741 0.00 0.00 36.51 3.67
103 104 7.013750 GTCATATCTTGATGAGTCCTAGACACA 59.986 40.741 0.00 0.00 36.51 3.72
104 105 5.590530 ATCTTGATGAGTCCTAGACACAC 57.409 43.478 0.00 0.00 36.15 3.82
105 106 3.764434 TCTTGATGAGTCCTAGACACACC 59.236 47.826 0.00 0.00 36.15 4.16
106 107 3.169512 TGATGAGTCCTAGACACACCA 57.830 47.619 0.00 0.00 36.15 4.17
107 108 3.713003 TGATGAGTCCTAGACACACCAT 58.287 45.455 0.00 0.00 36.15 3.55
108 109 4.096681 TGATGAGTCCTAGACACACCATT 58.903 43.478 0.00 0.00 36.15 3.16
109 110 5.269189 TGATGAGTCCTAGACACACCATTA 58.731 41.667 0.00 0.00 36.15 1.90
110 111 5.899547 TGATGAGTCCTAGACACACCATTAT 59.100 40.000 0.00 0.00 36.15 1.28
111 112 5.854010 TGAGTCCTAGACACACCATTATC 57.146 43.478 0.00 0.00 34.60 1.75
112 113 5.519808 TGAGTCCTAGACACACCATTATCT 58.480 41.667 0.00 0.00 34.60 1.98
113 114 5.594725 TGAGTCCTAGACACACCATTATCTC 59.405 44.000 0.00 0.00 34.60 2.75
114 115 5.519808 AGTCCTAGACACACCATTATCTCA 58.480 41.667 0.00 0.00 34.60 3.27
115 116 5.958380 AGTCCTAGACACACCATTATCTCAA 59.042 40.000 0.00 0.00 34.60 3.02
116 117 6.440647 AGTCCTAGACACACCATTATCTCAAA 59.559 38.462 0.00 0.00 34.60 2.69
117 118 6.758886 GTCCTAGACACACCATTATCTCAAAG 59.241 42.308 0.00 0.00 32.09 2.77
118 119 6.051717 CCTAGACACACCATTATCTCAAAGG 58.948 44.000 0.00 0.00 0.00 3.11
119 120 4.265073 AGACACACCATTATCTCAAAGGC 58.735 43.478 0.00 0.00 0.00 4.35
120 121 4.009675 GACACACCATTATCTCAAAGGCA 58.990 43.478 0.00 0.00 0.00 4.75
121 122 4.603131 ACACACCATTATCTCAAAGGCAT 58.397 39.130 0.00 0.00 0.00 4.40
122 123 5.018809 ACACACCATTATCTCAAAGGCATT 58.981 37.500 0.00 0.00 0.00 3.56
123 124 5.126061 ACACACCATTATCTCAAAGGCATTC 59.874 40.000 0.00 0.00 0.00 2.67
124 125 4.336433 ACACCATTATCTCAAAGGCATTCG 59.664 41.667 0.00 0.00 0.00 3.34
125 126 3.885297 ACCATTATCTCAAAGGCATTCGG 59.115 43.478 0.00 0.00 0.00 4.30
126 127 3.254166 CCATTATCTCAAAGGCATTCGGG 59.746 47.826 0.00 0.00 0.00 5.14
127 128 3.644966 TTATCTCAAAGGCATTCGGGT 57.355 42.857 0.00 0.00 0.00 5.28
128 129 1.755179 ATCTCAAAGGCATTCGGGTG 58.245 50.000 0.00 0.00 0.00 4.61
129 130 0.322456 TCTCAAAGGCATTCGGGTGG 60.322 55.000 0.00 0.00 0.00 4.61
130 131 0.609131 CTCAAAGGCATTCGGGTGGT 60.609 55.000 0.00 0.00 0.00 4.16
131 132 0.178975 TCAAAGGCATTCGGGTGGTT 60.179 50.000 0.00 0.00 0.00 3.67
132 133 0.243636 CAAAGGCATTCGGGTGGTTC 59.756 55.000 0.00 0.00 0.00 3.62
133 134 0.898326 AAAGGCATTCGGGTGGTTCC 60.898 55.000 0.00 0.00 0.00 3.62
134 135 1.789576 AAGGCATTCGGGTGGTTCCT 61.790 55.000 0.00 0.00 36.25 3.36
135 136 0.912487 AGGCATTCGGGTGGTTCCTA 60.912 55.000 0.00 0.00 36.25 2.94
136 137 0.034863 GGCATTCGGGTGGTTCCTAA 60.035 55.000 0.00 0.00 36.25 2.69
137 138 1.092348 GCATTCGGGTGGTTCCTAAC 58.908 55.000 0.00 0.00 36.25 2.34
154 155 8.030744 GTTCCTAACCTGTAGAAGATTTGAAC 57.969 38.462 0.00 0.00 0.00 3.18
155 156 7.554959 TCCTAACCTGTAGAAGATTTGAACT 57.445 36.000 0.00 0.00 0.00 3.01
156 157 7.974504 TCCTAACCTGTAGAAGATTTGAACTT 58.025 34.615 0.00 0.00 0.00 2.66
157 158 8.437575 TCCTAACCTGTAGAAGATTTGAACTTT 58.562 33.333 0.00 0.00 0.00 2.66
158 159 9.067986 CCTAACCTGTAGAAGATTTGAACTTTT 57.932 33.333 0.00 0.00 0.00 2.27
185 186 9.784531 ATCTCTAGAATCAAAGTTCACAGAAAA 57.215 29.630 0.00 0.00 0.00 2.29
186 187 9.784531 TCTCTAGAATCAAAGTTCACAGAAAAT 57.215 29.630 0.00 0.00 0.00 1.82
191 192 8.078596 AGAATCAAAGTTCACAGAAAATACTGC 58.921 33.333 0.00 0.00 41.06 4.40
192 193 6.942532 TCAAAGTTCACAGAAAATACTGCT 57.057 33.333 0.00 0.00 41.06 4.24
193 194 7.333528 TCAAAGTTCACAGAAAATACTGCTT 57.666 32.000 0.00 0.00 41.06 3.91
194 195 7.771183 TCAAAGTTCACAGAAAATACTGCTTT 58.229 30.769 0.00 0.00 41.06 3.51
195 196 8.250332 TCAAAGTTCACAGAAAATACTGCTTTT 58.750 29.630 0.00 0.00 41.06 2.27
196 197 7.992180 AAGTTCACAGAAAATACTGCTTTTG 57.008 32.000 0.00 0.00 41.06 2.44
197 198 6.507023 AGTTCACAGAAAATACTGCTTTTGG 58.493 36.000 0.00 0.00 41.06 3.28
198 199 6.321181 AGTTCACAGAAAATACTGCTTTTGGA 59.679 34.615 0.00 0.00 41.06 3.53
199 200 6.899393 TCACAGAAAATACTGCTTTTGGAT 57.101 33.333 0.00 0.00 41.06 3.41
200 201 6.913170 TCACAGAAAATACTGCTTTTGGATC 58.087 36.000 0.00 0.00 41.06 3.36
201 202 6.716628 TCACAGAAAATACTGCTTTTGGATCT 59.283 34.615 0.00 0.00 41.06 2.75
202 203 6.805271 CACAGAAAATACTGCTTTTGGATCTG 59.195 38.462 0.00 0.00 41.06 2.90
203 204 5.803967 CAGAAAATACTGCTTTTGGATCTGC 59.196 40.000 0.00 0.00 0.00 4.26
204 205 5.477984 AGAAAATACTGCTTTTGGATCTGCA 59.522 36.000 0.00 0.00 0.00 4.41
209 210 3.076079 TGCTTTTGGATCTGCAGATGA 57.924 42.857 33.33 16.68 34.37 2.92
210 211 3.628008 TGCTTTTGGATCTGCAGATGAT 58.372 40.909 33.33 11.44 34.37 2.45
211 212 4.784177 TGCTTTTGGATCTGCAGATGATA 58.216 39.130 33.33 15.89 34.37 2.15
212 213 5.382616 TGCTTTTGGATCTGCAGATGATAT 58.617 37.500 33.33 10.57 34.37 1.63
213 214 5.472478 TGCTTTTGGATCTGCAGATGATATC 59.528 40.000 33.33 18.93 34.37 1.63
214 215 5.472478 GCTTTTGGATCTGCAGATGATATCA 59.528 40.000 33.33 18.50 34.37 2.15
215 216 6.016527 GCTTTTGGATCTGCAGATGATATCAA 60.017 38.462 33.33 22.35 34.37 2.57
216 217 7.506328 TTTTGGATCTGCAGATGATATCAAG 57.494 36.000 33.33 2.15 34.37 3.02
217 218 5.820404 TGGATCTGCAGATGATATCAAGT 57.180 39.130 33.33 6.37 34.37 3.16
218 219 6.923199 TGGATCTGCAGATGATATCAAGTA 57.077 37.500 33.33 0.00 34.37 2.24
219 220 7.307131 TGGATCTGCAGATGATATCAAGTAA 57.693 36.000 33.33 0.00 34.37 2.24
220 221 7.914859 TGGATCTGCAGATGATATCAAGTAAT 58.085 34.615 33.33 5.06 34.37 1.89
221 222 9.039165 TGGATCTGCAGATGATATCAAGTAATA 57.961 33.333 33.33 0.00 34.37 0.98
248 249 8.371770 ACTGAATCTTCTGTTAAACAGTCTTC 57.628 34.615 0.00 0.00 46.03 2.87
249 250 8.207545 ACTGAATCTTCTGTTAAACAGTCTTCT 58.792 33.333 0.00 0.00 46.03 2.85
250 251 8.594881 TGAATCTTCTGTTAAACAGTCTTCTC 57.405 34.615 0.00 0.00 46.03 2.87
251 252 8.204160 TGAATCTTCTGTTAAACAGTCTTCTCA 58.796 33.333 0.00 0.00 46.03 3.27
252 253 9.213799 GAATCTTCTGTTAAACAGTCTTCTCAT 57.786 33.333 0.00 0.00 46.03 2.90
304 305 9.656323 TTTGTATTATCTCTAGGGCTTAGAAGA 57.344 33.333 7.80 7.78 37.93 2.87
305 306 9.830186 TTGTATTATCTCTAGGGCTTAGAAGAT 57.170 33.333 7.80 13.37 37.93 2.40
306 307 9.249053 TGTATTATCTCTAGGGCTTAGAAGATG 57.751 37.037 19.32 6.58 37.93 2.90
307 308 7.732222 ATTATCTCTAGGGCTTAGAAGATGG 57.268 40.000 19.32 6.31 37.93 3.51
308 309 4.544564 TCTCTAGGGCTTAGAAGATGGT 57.455 45.455 7.80 0.00 37.93 3.55
309 310 4.884961 TCTCTAGGGCTTAGAAGATGGTT 58.115 43.478 7.80 0.00 37.93 3.67
310 311 4.896482 TCTCTAGGGCTTAGAAGATGGTTC 59.104 45.833 7.80 0.00 37.93 3.62
311 312 4.884961 TCTAGGGCTTAGAAGATGGTTCT 58.115 43.478 3.56 0.00 35.46 3.01
312 313 6.027025 TCTAGGGCTTAGAAGATGGTTCTA 57.973 41.667 3.56 0.00 35.46 2.10
313 314 6.441222 TCTAGGGCTTAGAAGATGGTTCTAA 58.559 40.000 3.56 6.95 38.33 2.10
314 315 7.076446 TCTAGGGCTTAGAAGATGGTTCTAAT 58.924 38.462 3.56 0.00 39.45 1.73
315 316 5.934781 AGGGCTTAGAAGATGGTTCTAATG 58.065 41.667 7.49 4.52 39.45 1.90
316 317 4.517075 GGGCTTAGAAGATGGTTCTAATGC 59.483 45.833 7.49 11.53 39.45 3.56
317 318 5.372373 GGCTTAGAAGATGGTTCTAATGCT 58.628 41.667 18.11 0.00 39.45 3.79
318 319 5.825151 GGCTTAGAAGATGGTTCTAATGCTT 59.175 40.000 18.11 0.00 39.45 3.91
319 320 6.017523 GGCTTAGAAGATGGTTCTAATGCTTC 60.018 42.308 18.11 0.00 39.45 3.86
320 321 6.540189 GCTTAGAAGATGGTTCTAATGCTTCA 59.460 38.462 7.49 0.00 39.45 3.02
321 322 7.228308 GCTTAGAAGATGGTTCTAATGCTTCAT 59.772 37.037 7.49 0.00 39.45 2.57
322 323 8.668510 TTAGAAGATGGTTCTAATGCTTCATC 57.331 34.615 0.00 0.00 36.43 2.92
323 324 6.656902 AGAAGATGGTTCTAATGCTTCATCA 58.343 36.000 0.00 0.00 35.44 3.07
324 325 7.114754 AGAAGATGGTTCTAATGCTTCATCAA 58.885 34.615 0.00 0.00 35.44 2.57
325 326 6.690194 AGATGGTTCTAATGCTTCATCAAC 57.310 37.500 0.00 0.00 34.98 3.18
326 327 4.944962 TGGTTCTAATGCTTCATCAACG 57.055 40.909 0.00 0.00 0.00 4.10
327 328 4.574892 TGGTTCTAATGCTTCATCAACGA 58.425 39.130 0.00 0.00 0.00 3.85
328 329 5.000591 TGGTTCTAATGCTTCATCAACGAA 58.999 37.500 0.00 0.00 0.00 3.85
329 330 5.106712 TGGTTCTAATGCTTCATCAACGAAC 60.107 40.000 0.00 0.00 0.00 3.95
330 331 5.106712 GGTTCTAATGCTTCATCAACGAACA 60.107 40.000 0.00 0.00 32.24 3.18
331 332 6.370593 GTTCTAATGCTTCATCAACGAACAA 58.629 36.000 0.00 0.00 0.00 2.83
332 333 6.552859 TCTAATGCTTCATCAACGAACAAA 57.447 33.333 0.00 0.00 0.00 2.83
333 334 6.964908 TCTAATGCTTCATCAACGAACAAAA 58.035 32.000 0.00 0.00 0.00 2.44
334 335 7.421599 TCTAATGCTTCATCAACGAACAAAAA 58.578 30.769 0.00 0.00 0.00 1.94
335 336 8.081633 TCTAATGCTTCATCAACGAACAAAAAT 58.918 29.630 0.00 0.00 0.00 1.82
336 337 6.695292 ATGCTTCATCAACGAACAAAAATC 57.305 33.333 0.00 0.00 0.00 2.17
337 338 5.830912 TGCTTCATCAACGAACAAAAATCT 58.169 33.333 0.00 0.00 0.00 2.40
338 339 6.272318 TGCTTCATCAACGAACAAAAATCTT 58.728 32.000 0.00 0.00 0.00 2.40
339 340 7.421599 TGCTTCATCAACGAACAAAAATCTTA 58.578 30.769 0.00 0.00 0.00 2.10
340 341 8.081633 TGCTTCATCAACGAACAAAAATCTTAT 58.918 29.630 0.00 0.00 0.00 1.73
341 342 8.368126 GCTTCATCAACGAACAAAAATCTTATG 58.632 33.333 0.00 0.00 0.00 1.90
342 343 9.611284 CTTCATCAACGAACAAAAATCTTATGA 57.389 29.630 0.00 0.00 0.00 2.15
343 344 9.958234 TTCATCAACGAACAAAAATCTTATGAA 57.042 25.926 0.00 0.00 0.00 2.57
344 345 9.611284 TCATCAACGAACAAAAATCTTATGAAG 57.389 29.630 0.00 0.00 0.00 3.02
345 346 8.853345 CATCAACGAACAAAAATCTTATGAAGG 58.147 33.333 0.00 0.00 0.00 3.46
346 347 8.160521 TCAACGAACAAAAATCTTATGAAGGA 57.839 30.769 0.00 0.00 0.00 3.36
347 348 8.289618 TCAACGAACAAAAATCTTATGAAGGAG 58.710 33.333 0.00 0.00 0.00 3.69
348 349 7.145932 ACGAACAAAAATCTTATGAAGGAGG 57.854 36.000 0.00 0.00 0.00 4.30
349 350 6.940298 ACGAACAAAAATCTTATGAAGGAGGA 59.060 34.615 0.00 0.00 0.00 3.71
350 351 7.094762 ACGAACAAAAATCTTATGAAGGAGGAC 60.095 37.037 0.00 0.00 0.00 3.85
351 352 7.094805 CGAACAAAAATCTTATGAAGGAGGACA 60.095 37.037 0.00 0.00 0.00 4.02
352 353 8.655935 AACAAAAATCTTATGAAGGAGGACAT 57.344 30.769 0.00 0.00 0.00 3.06
353 354 8.059798 ACAAAAATCTTATGAAGGAGGACATG 57.940 34.615 0.00 0.00 0.00 3.21
354 355 7.671398 ACAAAAATCTTATGAAGGAGGACATGT 59.329 33.333 0.00 0.00 0.00 3.21
355 356 9.177608 CAAAAATCTTATGAAGGAGGACATGTA 57.822 33.333 0.00 0.00 0.00 2.29
356 357 9.927081 AAAAATCTTATGAAGGAGGACATGTAT 57.073 29.630 0.00 0.00 0.00 2.29
359 360 7.215719 TCTTATGAAGGAGGACATGTATACG 57.784 40.000 0.00 0.00 0.00 3.06
360 361 4.873746 ATGAAGGAGGACATGTATACGG 57.126 45.455 0.00 0.00 0.00 4.02
361 362 3.905968 TGAAGGAGGACATGTATACGGA 58.094 45.455 0.00 0.00 0.00 4.69
362 363 3.889538 TGAAGGAGGACATGTATACGGAG 59.110 47.826 0.00 0.00 0.00 4.63
363 364 3.878237 AGGAGGACATGTATACGGAGA 57.122 47.619 0.00 0.00 0.00 3.71
364 365 4.390129 AGGAGGACATGTATACGGAGAT 57.610 45.455 0.00 0.00 0.00 2.75
365 366 5.516059 AGGAGGACATGTATACGGAGATA 57.484 43.478 0.00 0.00 0.00 1.98
366 367 6.080969 AGGAGGACATGTATACGGAGATAT 57.919 41.667 0.00 0.00 0.00 1.63
367 368 6.494952 AGGAGGACATGTATACGGAGATATT 58.505 40.000 0.00 0.00 0.00 1.28
368 369 6.378564 AGGAGGACATGTATACGGAGATATTG 59.621 42.308 0.00 0.00 0.00 1.90
369 370 6.405953 GGAGGACATGTATACGGAGATATTGG 60.406 46.154 0.00 0.00 0.00 3.16
370 371 6.253758 AGGACATGTATACGGAGATATTGGA 58.746 40.000 0.00 0.00 0.00 3.53
371 372 6.897966 AGGACATGTATACGGAGATATTGGAT 59.102 38.462 0.00 0.00 0.00 3.41
372 373 6.980978 GGACATGTATACGGAGATATTGGATG 59.019 42.308 0.00 0.00 0.00 3.51
373 374 7.363880 GGACATGTATACGGAGATATTGGATGT 60.364 40.741 0.00 0.00 0.00 3.06
374 375 7.323420 ACATGTATACGGAGATATTGGATGTG 58.677 38.462 0.00 0.00 0.00 3.21
375 376 7.178451 ACATGTATACGGAGATATTGGATGTGA 59.822 37.037 0.00 0.00 0.00 3.58
376 377 7.718334 TGTATACGGAGATATTGGATGTGAT 57.282 36.000 0.00 0.00 0.00 3.06
377 378 7.547227 TGTATACGGAGATATTGGATGTGATG 58.453 38.462 0.00 0.00 0.00 3.07
378 379 6.857437 ATACGGAGATATTGGATGTGATGA 57.143 37.500 0.00 0.00 0.00 2.92
379 380 5.752036 ACGGAGATATTGGATGTGATGAT 57.248 39.130 0.00 0.00 0.00 2.45
380 381 5.485620 ACGGAGATATTGGATGTGATGATG 58.514 41.667 0.00 0.00 0.00 3.07
381 382 5.246883 ACGGAGATATTGGATGTGATGATGA 59.753 40.000 0.00 0.00 0.00 2.92
382 383 6.070366 ACGGAGATATTGGATGTGATGATGAT 60.070 38.462 0.00 0.00 0.00 2.45
383 384 6.258068 CGGAGATATTGGATGTGATGATGATG 59.742 42.308 0.00 0.00 0.00 3.07
384 385 6.542735 GGAGATATTGGATGTGATGATGATGG 59.457 42.308 0.00 0.00 0.00 3.51
385 386 7.266905 AGATATTGGATGTGATGATGATGGA 57.733 36.000 0.00 0.00 0.00 3.41
386 387 7.110810 AGATATTGGATGTGATGATGATGGAC 58.889 38.462 0.00 0.00 0.00 4.02
387 388 3.116079 TGGATGTGATGATGATGGACG 57.884 47.619 0.00 0.00 0.00 4.79
388 389 2.699846 TGGATGTGATGATGATGGACGA 59.300 45.455 0.00 0.00 0.00 4.20
389 390 3.243975 TGGATGTGATGATGATGGACGAG 60.244 47.826 0.00 0.00 0.00 4.18
390 391 2.896745 TGTGATGATGATGGACGAGG 57.103 50.000 0.00 0.00 0.00 4.63
391 392 2.110578 TGTGATGATGATGGACGAGGT 58.889 47.619 0.00 0.00 0.00 3.85
392 393 3.295973 TGTGATGATGATGGACGAGGTA 58.704 45.455 0.00 0.00 0.00 3.08
393 394 3.897505 TGTGATGATGATGGACGAGGTAT 59.102 43.478 0.00 0.00 0.00 2.73
394 395 4.240888 GTGATGATGATGGACGAGGTATG 58.759 47.826 0.00 0.00 0.00 2.39
395 396 4.021981 GTGATGATGATGGACGAGGTATGA 60.022 45.833 0.00 0.00 0.00 2.15
396 397 4.774200 TGATGATGATGGACGAGGTATGAT 59.226 41.667 0.00 0.00 0.00 2.45
397 398 4.525912 TGATGATGGACGAGGTATGATG 57.474 45.455 0.00 0.00 0.00 3.07
398 399 2.820059 TGATGGACGAGGTATGATGC 57.180 50.000 0.00 0.00 0.00 3.91
399 400 1.344438 TGATGGACGAGGTATGATGCC 59.656 52.381 0.00 0.00 0.00 4.40
400 401 1.620819 GATGGACGAGGTATGATGCCT 59.379 52.381 0.30 0.30 39.42 4.75
401 402 1.496060 TGGACGAGGTATGATGCCTT 58.504 50.000 2.92 0.00 36.29 4.35
402 403 2.673258 TGGACGAGGTATGATGCCTTA 58.327 47.619 2.92 0.00 36.29 2.69
403 404 3.239449 TGGACGAGGTATGATGCCTTAT 58.761 45.455 2.92 0.00 36.29 1.73
404 405 3.006859 TGGACGAGGTATGATGCCTTATG 59.993 47.826 2.92 0.00 36.29 1.90
405 406 2.996621 GACGAGGTATGATGCCTTATGC 59.003 50.000 2.92 0.00 36.29 3.14
406 407 1.995484 CGAGGTATGATGCCTTATGCG 59.005 52.381 2.92 0.00 45.60 4.73
407 408 2.352715 CGAGGTATGATGCCTTATGCGA 60.353 50.000 2.92 0.00 45.60 5.10
408 409 3.677148 CGAGGTATGATGCCTTATGCGAT 60.677 47.826 2.92 0.00 45.60 4.58
409 410 4.440112 CGAGGTATGATGCCTTATGCGATA 60.440 45.833 2.92 0.00 45.60 2.92
410 411 5.419542 GAGGTATGATGCCTTATGCGATAA 58.580 41.667 2.92 0.00 45.60 1.75
411 412 5.423015 AGGTATGATGCCTTATGCGATAAG 58.577 41.667 0.00 8.22 45.60 1.73
412 413 5.046304 AGGTATGATGCCTTATGCGATAAGT 60.046 40.000 0.00 0.00 45.60 2.24
413 414 6.154534 AGGTATGATGCCTTATGCGATAAGTA 59.845 38.462 0.00 4.86 45.60 2.24
414 415 6.986817 GGTATGATGCCTTATGCGATAAGTAT 59.013 38.462 12.12 8.00 45.60 2.12
415 416 7.495934 GGTATGATGCCTTATGCGATAAGTATT 59.504 37.037 12.12 1.22 45.60 1.89
416 417 6.726258 TGATGCCTTATGCGATAAGTATTG 57.274 37.500 12.12 2.56 45.60 1.90
417 418 6.230472 TGATGCCTTATGCGATAAGTATTGT 58.770 36.000 12.12 0.00 45.60 2.71
418 419 6.368791 TGATGCCTTATGCGATAAGTATTGTC 59.631 38.462 12.12 6.33 45.60 3.18
419 420 4.994852 TGCCTTATGCGATAAGTATTGTCC 59.005 41.667 12.12 0.00 45.60 4.02
420 421 5.221641 TGCCTTATGCGATAAGTATTGTCCT 60.222 40.000 12.12 0.00 45.60 3.85
421 422 6.014925 TGCCTTATGCGATAAGTATTGTCCTA 60.015 38.462 12.12 0.00 45.60 2.94
422 423 6.310711 GCCTTATGCGATAAGTATTGTCCTAC 59.689 42.308 12.12 0.00 40.44 3.18
423 424 7.603651 CCTTATGCGATAAGTATTGTCCTACT 58.396 38.462 12.12 0.00 40.44 2.57
424 425 7.542477 CCTTATGCGATAAGTATTGTCCTACTG 59.458 40.741 12.12 0.00 40.44 2.74
425 426 5.196341 TGCGATAAGTATTGTCCTACTGG 57.804 43.478 0.00 0.00 31.96 4.00
426 427 4.891168 TGCGATAAGTATTGTCCTACTGGA 59.109 41.667 0.00 0.00 40.69 3.86
427 428 5.361571 TGCGATAAGTATTGTCCTACTGGAA 59.638 40.000 0.00 0.00 45.18 3.53
428 429 5.921408 GCGATAAGTATTGTCCTACTGGAAG 59.079 44.000 0.00 0.00 45.18 3.46
429 430 6.461231 GCGATAAGTATTGTCCTACTGGAAGT 60.461 42.308 0.00 0.00 45.18 3.01
430 431 7.255381 GCGATAAGTATTGTCCTACTGGAAGTA 60.255 40.741 0.00 0.00 45.18 2.24
442 443 2.915349 CTGGAAGTAGCATGTGCATCT 58.085 47.619 7.83 2.30 45.16 2.90
443 444 3.276857 CTGGAAGTAGCATGTGCATCTT 58.723 45.455 7.83 10.38 45.16 2.40
444 445 3.689347 TGGAAGTAGCATGTGCATCTTT 58.311 40.909 7.83 0.00 45.16 2.52
445 446 4.081406 TGGAAGTAGCATGTGCATCTTTT 58.919 39.130 7.83 0.00 45.16 2.27
446 447 5.252547 TGGAAGTAGCATGTGCATCTTTTA 58.747 37.500 7.83 2.72 45.16 1.52
447 448 5.709631 TGGAAGTAGCATGTGCATCTTTTAA 59.290 36.000 7.83 0.04 45.16 1.52
448 449 6.208402 TGGAAGTAGCATGTGCATCTTTTAAA 59.792 34.615 7.83 0.00 45.16 1.52
449 450 7.093814 TGGAAGTAGCATGTGCATCTTTTAAAT 60.094 33.333 7.83 0.00 45.16 1.40
450 451 8.405531 GGAAGTAGCATGTGCATCTTTTAAATA 58.594 33.333 7.83 0.00 45.16 1.40
451 452 9.443283 GAAGTAGCATGTGCATCTTTTAAATAG 57.557 33.333 7.83 0.00 45.16 1.73
452 453 7.420800 AGTAGCATGTGCATCTTTTAAATAGC 58.579 34.615 7.83 0.00 45.16 2.97
453 454 6.461110 AGCATGTGCATCTTTTAAATAGCT 57.539 33.333 7.83 0.00 45.16 3.32
454 455 7.572523 AGCATGTGCATCTTTTAAATAGCTA 57.427 32.000 7.83 0.00 45.16 3.32
455 456 8.174733 AGCATGTGCATCTTTTAAATAGCTAT 57.825 30.769 7.83 0.00 45.16 2.97
456 457 9.288576 AGCATGTGCATCTTTTAAATAGCTATA 57.711 29.630 6.68 0.00 45.16 1.31
475 476 8.627208 AGCTATATATTGAGGAAAACCATGTG 57.373 34.615 0.00 0.00 0.00 3.21
476 477 8.220559 AGCTATATATTGAGGAAAACCATGTGT 58.779 33.333 0.00 0.00 0.00 3.72
477 478 8.292448 GCTATATATTGAGGAAAACCATGTGTG 58.708 37.037 0.00 0.00 0.00 3.82
478 479 9.559732 CTATATATTGAGGAAAACCATGTGTGA 57.440 33.333 0.00 0.00 0.00 3.58
480 481 7.722949 ATATTGAGGAAAACCATGTGTGATT 57.277 32.000 0.00 0.00 0.00 2.57
481 482 5.867903 TTGAGGAAAACCATGTGTGATTT 57.132 34.783 0.00 0.00 0.00 2.17
482 483 6.968263 TTGAGGAAAACCATGTGTGATTTA 57.032 33.333 0.00 0.00 0.00 1.40
483 484 6.968263 TGAGGAAAACCATGTGTGATTTAA 57.032 33.333 0.00 0.00 0.00 1.52
484 485 6.744112 TGAGGAAAACCATGTGTGATTTAAC 58.256 36.000 0.00 0.00 0.00 2.01
485 486 5.768317 AGGAAAACCATGTGTGATTTAACG 58.232 37.500 0.00 0.00 0.00 3.18
486 487 4.384547 GGAAAACCATGTGTGATTTAACGC 59.615 41.667 0.00 0.00 0.00 4.84
487 488 3.569250 AACCATGTGTGATTTAACGCC 57.431 42.857 0.00 0.00 0.00 5.68
488 489 2.790433 ACCATGTGTGATTTAACGCCT 58.210 42.857 0.00 0.00 0.00 5.52
489 490 2.747446 ACCATGTGTGATTTAACGCCTC 59.253 45.455 0.00 0.00 0.00 4.70
490 491 3.009723 CCATGTGTGATTTAACGCCTCT 58.990 45.455 0.00 0.00 0.00 3.69
491 492 3.063997 CCATGTGTGATTTAACGCCTCTC 59.936 47.826 0.00 0.00 0.00 3.20
492 493 3.394674 TGTGTGATTTAACGCCTCTCA 57.605 42.857 0.00 0.00 0.00 3.27
493 494 3.325870 TGTGTGATTTAACGCCTCTCAG 58.674 45.455 0.00 0.00 0.00 3.35
494 495 2.673368 GTGTGATTTAACGCCTCTCAGG 59.327 50.000 0.00 0.00 38.80 3.86
495 496 2.565391 TGTGATTTAACGCCTCTCAGGA 59.435 45.455 0.00 0.00 37.67 3.86
496 497 3.007506 TGTGATTTAACGCCTCTCAGGAA 59.992 43.478 0.00 0.00 37.67 3.36
497 498 3.619038 GTGATTTAACGCCTCTCAGGAAG 59.381 47.826 0.00 0.00 37.67 3.46
498 499 2.094762 TTTAACGCCTCTCAGGAAGC 57.905 50.000 0.00 0.00 37.67 3.86
499 500 0.249398 TTAACGCCTCTCAGGAAGCC 59.751 55.000 0.00 0.00 37.67 4.35
500 501 1.614241 TAACGCCTCTCAGGAAGCCC 61.614 60.000 0.00 0.00 37.67 5.19
501 502 4.521062 CGCCTCTCAGGAAGCCCG 62.521 72.222 0.00 0.00 37.67 6.13
502 503 4.847444 GCCTCTCAGGAAGCCCGC 62.847 72.222 0.00 0.00 37.67 6.13
503 504 4.521062 CCTCTCAGGAAGCCCGCG 62.521 72.222 0.00 0.00 37.67 6.46
504 505 4.521062 CTCTCAGGAAGCCCGCGG 62.521 72.222 21.04 21.04 37.58 6.46
506 507 4.821589 CTCAGGAAGCCCGCGGTC 62.822 72.222 26.12 12.63 37.58 4.79
510 511 3.908081 GGAAGCCCGCGGTCGATA 61.908 66.667 26.12 0.00 38.10 2.92
511 512 2.354773 GAAGCCCGCGGTCGATAG 60.355 66.667 26.12 8.60 38.10 2.08
609 615 6.152323 TCAAGTCTACTTTTATCTAGCGGTGT 59.848 38.462 0.00 0.00 33.11 4.16
614 622 8.167345 GTCTACTTTTATCTAGCGGTGTTTTTC 58.833 37.037 0.00 0.00 0.00 2.29
622 630 5.553123 TCTAGCGGTGTTTTTCTTATCCAA 58.447 37.500 0.00 0.00 0.00 3.53
652 661 7.221259 TGGTTGACTCGTTGACAATATAATACG 59.779 37.037 0.00 0.00 33.47 3.06
658 673 4.145243 CGTTGACAATATAATACGTCGCGT 59.855 41.667 5.77 9.64 44.35 6.01
709 945 2.540265 AGGCTGCTAATGATCGGAAG 57.460 50.000 0.00 0.00 0.00 3.46
710 946 0.871057 GGCTGCTAATGATCGGAAGC 59.129 55.000 0.00 6.15 35.51 3.86
711 947 1.586422 GCTGCTAATGATCGGAAGCA 58.414 50.000 13.15 13.15 42.41 3.91
713 949 2.988010 TGCTAATGATCGGAAGCAGT 57.012 45.000 10.59 0.00 39.92 4.40
714 950 2.554142 TGCTAATGATCGGAAGCAGTG 58.446 47.619 10.59 0.00 39.92 3.66
849 1131 0.615331 TGACCTGGCTGAGACCAATC 59.385 55.000 0.00 0.00 39.86 2.67
927 1222 1.536072 CCACATCGATCAGTACCCACG 60.536 57.143 0.00 0.00 0.00 4.94
983 1278 1.339151 GGCGACCCAAGACAGAAGAAT 60.339 52.381 0.00 0.00 0.00 2.40
984 1279 2.003301 GCGACCCAAGACAGAAGAATC 58.997 52.381 0.00 0.00 0.00 2.52
985 1280 2.263077 CGACCCAAGACAGAAGAATCG 58.737 52.381 0.00 0.00 0.00 3.34
986 1281 2.622436 GACCCAAGACAGAAGAATCGG 58.378 52.381 0.00 0.00 0.00 4.18
987 1282 2.233922 GACCCAAGACAGAAGAATCGGA 59.766 50.000 0.00 0.00 0.00 4.55
988 1283 2.840651 ACCCAAGACAGAAGAATCGGAT 59.159 45.455 0.00 0.00 0.00 4.18
989 1284 3.118592 ACCCAAGACAGAAGAATCGGATC 60.119 47.826 0.00 0.00 0.00 3.36
990 1285 3.462021 CCAAGACAGAAGAATCGGATCC 58.538 50.000 0.00 0.00 0.00 3.36
991 1286 3.118629 CCAAGACAGAAGAATCGGATCCA 60.119 47.826 13.41 0.00 0.00 3.41
992 1287 4.118410 CAAGACAGAAGAATCGGATCCAG 58.882 47.826 13.41 4.86 0.00 3.86
993 1288 3.636679 AGACAGAAGAATCGGATCCAGA 58.363 45.455 13.41 10.55 0.00 3.86
994 1289 4.026744 AGACAGAAGAATCGGATCCAGAA 58.973 43.478 13.41 0.00 0.00 3.02
1009 1304 4.443978 TCCAGAAGAATCATGGATTCCC 57.556 45.455 13.71 7.72 46.65 3.97
1185 1571 1.783711 GCTGAGTTGATCGATGTAGCG 59.216 52.381 0.54 0.00 0.00 4.26
1194 1580 0.752009 TCGATGTAGCGGAGGAGCTT 60.752 55.000 0.00 0.00 46.80 3.74
1569 1955 2.030562 CTCCACGTGAGGGCGTTT 59.969 61.111 19.30 0.00 43.83 3.60
1685 2071 0.322277 CTCAGGCTCCAGCACAACAT 60.322 55.000 0.03 0.00 44.36 2.71
1700 2097 2.061773 CAACATGGACGACTGACTGAC 58.938 52.381 0.00 0.00 0.00 3.51
1701 2098 1.621992 ACATGGACGACTGACTGACT 58.378 50.000 0.00 0.00 0.00 3.41
1702 2099 1.542030 ACATGGACGACTGACTGACTC 59.458 52.381 0.00 0.00 0.00 3.36
1703 2100 1.541588 CATGGACGACTGACTGACTCA 59.458 52.381 0.00 0.00 0.00 3.41
1704 2101 1.687563 TGGACGACTGACTGACTCAA 58.312 50.000 0.00 0.00 0.00 3.02
1705 2102 1.609072 TGGACGACTGACTGACTCAAG 59.391 52.381 0.00 0.00 0.00 3.02
1706 2103 1.880675 GGACGACTGACTGACTCAAGA 59.119 52.381 0.00 0.00 0.00 3.02
1707 2104 2.490115 GGACGACTGACTGACTCAAGAT 59.510 50.000 0.00 0.00 0.00 2.40
1708 2105 3.426963 GGACGACTGACTGACTCAAGATC 60.427 52.174 0.00 0.00 0.00 2.75
1721 2128 5.106515 TGACTCAAGATCGATCGATGATACC 60.107 44.000 33.86 18.97 34.60 2.73
1726 2133 1.911057 TCGATCGATGATACCTGGCT 58.089 50.000 15.15 0.00 0.00 4.75
1780 2189 1.260561 CCCTTCAGTTTGACGACGTTG 59.739 52.381 0.13 0.00 0.00 4.10
1786 2195 0.928229 GTTTGACGACGTTGTGCTCT 59.072 50.000 14.59 0.00 0.00 4.09
1787 2196 2.121786 GTTTGACGACGTTGTGCTCTA 58.878 47.619 14.59 0.00 0.00 2.43
1818 2237 0.313043 TCGTGGTTCCGTGAGAAGTC 59.687 55.000 0.00 0.00 34.29 3.01
1831 2250 3.743396 GTGAGAAGTCTGTGCTACCTTTG 59.257 47.826 0.00 0.00 0.00 2.77
1832 2251 3.388024 TGAGAAGTCTGTGCTACCTTTGT 59.612 43.478 0.00 0.00 0.00 2.83
1833 2252 3.733337 AGAAGTCTGTGCTACCTTTGTG 58.267 45.455 0.00 0.00 0.00 3.33
1834 2253 3.134804 AGAAGTCTGTGCTACCTTTGTGT 59.865 43.478 0.00 0.00 0.00 3.72
1835 2254 4.344102 AGAAGTCTGTGCTACCTTTGTGTA 59.656 41.667 0.00 0.00 0.00 2.90
1836 2255 4.682778 AGTCTGTGCTACCTTTGTGTAA 57.317 40.909 0.00 0.00 0.00 2.41
1837 2256 5.228945 AGTCTGTGCTACCTTTGTGTAAT 57.771 39.130 0.00 0.00 0.00 1.89
1838 2257 6.354794 AGTCTGTGCTACCTTTGTGTAATA 57.645 37.500 0.00 0.00 0.00 0.98
1839 2258 6.765403 AGTCTGTGCTACCTTTGTGTAATAA 58.235 36.000 0.00 0.00 0.00 1.40
1840 2259 7.221450 AGTCTGTGCTACCTTTGTGTAATAAA 58.779 34.615 0.00 0.00 0.00 1.40
1841 2260 7.387948 AGTCTGTGCTACCTTTGTGTAATAAAG 59.612 37.037 0.00 0.00 43.66 1.85
1842 2261 6.148811 TCTGTGCTACCTTTGTGTAATAAAGC 59.851 38.462 0.00 0.00 42.83 3.51
1843 2262 5.106869 TGTGCTACCTTTGTGTAATAAAGCG 60.107 40.000 0.00 0.00 42.83 4.68
1844 2263 4.142773 TGCTACCTTTGTGTAATAAAGCGC 60.143 41.667 0.00 0.00 42.83 5.92
1845 2264 3.842732 ACCTTTGTGTAATAAAGCGCC 57.157 42.857 2.29 0.00 42.83 6.53
1846 2265 2.160813 ACCTTTGTGTAATAAAGCGCCG 59.839 45.455 2.29 0.00 42.83 6.46
1847 2266 2.417239 CCTTTGTGTAATAAAGCGCCGA 59.583 45.455 2.29 0.00 42.83 5.54
1848 2267 3.120130 CCTTTGTGTAATAAAGCGCCGAA 60.120 43.478 2.29 0.00 42.83 4.30
1849 2268 3.733024 TTGTGTAATAAAGCGCCGAAG 57.267 42.857 2.29 0.00 0.00 3.79
1850 2269 1.395608 TGTGTAATAAAGCGCCGAAGC 59.604 47.619 2.29 0.00 37.41 3.86
1894 2313 1.463056 CGCCGAAGAATTGCACTGTAA 59.537 47.619 0.00 0.00 0.00 2.41
1895 2314 2.095969 CGCCGAAGAATTGCACTGTAAA 60.096 45.455 0.00 0.00 0.00 2.01
1896 2315 3.608241 CGCCGAAGAATTGCACTGTAAAA 60.608 43.478 0.00 0.00 0.00 1.52
1897 2316 4.295051 GCCGAAGAATTGCACTGTAAAAA 58.705 39.130 0.00 0.00 0.00 1.94
1930 2531 1.720316 CGTGCGTATGTGTTTTACCGA 59.280 47.619 0.00 0.00 0.00 4.69
1940 2541 5.395682 TGTGTTTTACCGATGCTACTAGT 57.604 39.130 0.00 0.00 0.00 2.57
1941 2542 6.513806 TGTGTTTTACCGATGCTACTAGTA 57.486 37.500 1.89 1.89 0.00 1.82
1942 2543 6.558009 TGTGTTTTACCGATGCTACTAGTAG 58.442 40.000 23.25 23.25 36.29 2.57
1948 2549 2.289820 CCGATGCTACTAGTAGAACGCA 59.710 50.000 30.09 22.03 35.21 5.24
2130 3035 5.011090 TGGAATAAGATTCTCCTCACGTG 57.989 43.478 9.94 9.94 0.00 4.49
2131 3036 4.709886 TGGAATAAGATTCTCCTCACGTGA 59.290 41.667 18.88 18.88 0.00 4.35
2135 3040 2.096248 AGATTCTCCTCACGTGACTCC 58.904 52.381 15.76 0.00 0.00 3.85
2140 3045 1.972223 CCTCACGTGACTCCCGTCT 60.972 63.158 15.76 0.00 40.86 4.18
2146 3051 1.080434 GTGACTCCCGTCTCAGTGC 60.080 63.158 0.00 0.00 40.86 4.40
2152 3057 2.566529 CCGTCTCAGTGCTGCGTA 59.433 61.111 0.00 0.00 0.00 4.42
2207 3112 4.344102 CCTTCGGTGGATCTACTTGGATAA 59.656 45.833 9.27 0.00 0.00 1.75
2208 3113 5.163343 CCTTCGGTGGATCTACTTGGATAAA 60.163 44.000 9.27 0.00 0.00 1.40
2221 3126 8.253810 TCTACTTGGATAAAGTCTTCATCTGTG 58.746 37.037 0.00 0.00 46.60 3.66
2232 3137 2.595124 TCATCTGTGTGTGTTCGTGT 57.405 45.000 0.00 0.00 0.00 4.49
2292 3197 0.179111 CGGCGAGGTTGCTATTCTGA 60.179 55.000 0.00 0.00 34.52 3.27
2384 3293 2.430694 CTGTAAGGGATGGACGATGACA 59.569 50.000 0.00 0.00 0.00 3.58
2666 3580 7.643569 AAAAGGAATTGCCAATTGTCTTTTT 57.356 28.000 22.09 15.17 37.50 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.649218 ACTTGCCCAGACTTATTGTTTGTT 59.351 37.500 0.00 0.00 0.00 2.83
2 3 4.853924 ACTTGCCCAGACTTATTGTTTG 57.146 40.909 0.00 0.00 0.00 2.93
3 4 5.128663 ACAAACTTGCCCAGACTTATTGTTT 59.871 36.000 0.00 0.00 0.00 2.83
4 5 4.649218 ACAAACTTGCCCAGACTTATTGTT 59.351 37.500 0.00 0.00 0.00 2.83
5 6 4.215109 ACAAACTTGCCCAGACTTATTGT 58.785 39.130 0.00 0.00 0.00 2.71
6 7 4.853924 ACAAACTTGCCCAGACTTATTG 57.146 40.909 0.00 0.00 0.00 1.90
7 8 5.869649 AAACAAACTTGCCCAGACTTATT 57.130 34.783 0.00 0.00 0.00 1.40
8 9 5.869649 AAAACAAACTTGCCCAGACTTAT 57.130 34.783 0.00 0.00 0.00 1.73
9 10 5.420739 AGAAAAACAAACTTGCCCAGACTTA 59.579 36.000 0.00 0.00 0.00 2.24
10 11 4.222810 AGAAAAACAAACTTGCCCAGACTT 59.777 37.500 0.00 0.00 0.00 3.01
11 12 3.769300 AGAAAAACAAACTTGCCCAGACT 59.231 39.130 0.00 0.00 0.00 3.24
12 13 4.112634 GAGAAAAACAAACTTGCCCAGAC 58.887 43.478 0.00 0.00 0.00 3.51
13 14 4.023291 AGAGAAAAACAAACTTGCCCAGA 58.977 39.130 0.00 0.00 0.00 3.86
14 15 4.391405 AGAGAAAAACAAACTTGCCCAG 57.609 40.909 0.00 0.00 0.00 4.45
15 16 4.221703 TCAAGAGAAAAACAAACTTGCCCA 59.778 37.500 0.00 0.00 38.13 5.36
16 17 4.754322 TCAAGAGAAAAACAAACTTGCCC 58.246 39.130 0.00 0.00 38.13 5.36
17 18 5.812127 ACATCAAGAGAAAAACAAACTTGCC 59.188 36.000 0.00 0.00 38.13 4.52
18 19 6.237915 CCACATCAAGAGAAAAACAAACTTGC 60.238 38.462 0.00 0.00 38.13 4.01
19 20 6.256321 CCCACATCAAGAGAAAAACAAACTTG 59.744 38.462 0.00 0.00 39.13 3.16
20 21 6.340522 CCCACATCAAGAGAAAAACAAACTT 58.659 36.000 0.00 0.00 0.00 2.66
21 22 5.163416 CCCCACATCAAGAGAAAAACAAACT 60.163 40.000 0.00 0.00 0.00 2.66
22 23 5.049828 CCCCACATCAAGAGAAAAACAAAC 58.950 41.667 0.00 0.00 0.00 2.93
23 24 4.100808 CCCCCACATCAAGAGAAAAACAAA 59.899 41.667 0.00 0.00 0.00 2.83
24 25 3.640967 CCCCCACATCAAGAGAAAAACAA 59.359 43.478 0.00 0.00 0.00 2.83
25 26 3.230134 CCCCCACATCAAGAGAAAAACA 58.770 45.455 0.00 0.00 0.00 2.83
26 27 3.005791 CACCCCCACATCAAGAGAAAAAC 59.994 47.826 0.00 0.00 0.00 2.43
27 28 3.117322 TCACCCCCACATCAAGAGAAAAA 60.117 43.478 0.00 0.00 0.00 1.94
28 29 2.445145 TCACCCCCACATCAAGAGAAAA 59.555 45.455 0.00 0.00 0.00 2.29
29 30 2.061848 TCACCCCCACATCAAGAGAAA 58.938 47.619 0.00 0.00 0.00 2.52
30 31 1.741028 TCACCCCCACATCAAGAGAA 58.259 50.000 0.00 0.00 0.00 2.87
31 32 1.561076 CATCACCCCCACATCAAGAGA 59.439 52.381 0.00 0.00 0.00 3.10
32 33 1.283029 ACATCACCCCCACATCAAGAG 59.717 52.381 0.00 0.00 0.00 2.85
33 34 1.281867 GACATCACCCCCACATCAAGA 59.718 52.381 0.00 0.00 0.00 3.02
34 35 1.004628 TGACATCACCCCCACATCAAG 59.995 52.381 0.00 0.00 0.00 3.02
35 36 1.071434 TGACATCACCCCCACATCAA 58.929 50.000 0.00 0.00 0.00 2.57
36 37 1.297968 ATGACATCACCCCCACATCA 58.702 50.000 0.00 0.00 0.00 3.07
37 38 2.439507 AGTATGACATCACCCCCACATC 59.560 50.000 0.00 0.00 0.00 3.06
38 39 2.492025 AGTATGACATCACCCCCACAT 58.508 47.619 0.00 0.00 0.00 3.21
39 40 1.965414 AGTATGACATCACCCCCACA 58.035 50.000 0.00 0.00 0.00 4.17
40 41 4.497291 TTAAGTATGACATCACCCCCAC 57.503 45.455 0.00 0.00 0.00 4.61
41 42 5.044476 ACATTTAAGTATGACATCACCCCCA 60.044 40.000 0.00 0.00 0.00 4.96
42 43 5.299279 CACATTTAAGTATGACATCACCCCC 59.701 44.000 0.00 0.00 0.00 5.40
43 44 6.038271 GTCACATTTAAGTATGACATCACCCC 59.962 42.308 4.65 0.00 40.95 4.95
44 45 6.597672 TGTCACATTTAAGTATGACATCACCC 59.402 38.462 7.89 0.00 44.88 4.61
45 46 7.609760 TGTCACATTTAAGTATGACATCACC 57.390 36.000 7.89 0.00 44.88 4.02
70 71 9.593565 AGGACTCATCAAGATATGACATAACTA 57.406 33.333 5.74 0.00 41.93 2.24
71 72 8.489676 AGGACTCATCAAGATATGACATAACT 57.510 34.615 0.00 0.00 41.93 2.24
72 73 9.853555 CTAGGACTCATCAAGATATGACATAAC 57.146 37.037 0.00 0.00 41.93 1.89
73 74 9.813826 TCTAGGACTCATCAAGATATGACATAA 57.186 33.333 0.00 0.00 41.93 1.90
74 75 9.237187 GTCTAGGACTCATCAAGATATGACATA 57.763 37.037 0.00 0.00 41.93 2.29
75 76 7.727634 TGTCTAGGACTCATCAAGATATGACAT 59.272 37.037 0.00 0.00 35.62 3.06
76 77 7.013750 GTGTCTAGGACTCATCAAGATATGACA 59.986 40.741 0.00 0.00 35.62 3.58
77 78 7.013750 TGTGTCTAGGACTCATCAAGATATGAC 59.986 40.741 0.00 0.00 35.62 3.06
78 79 7.013750 GTGTGTCTAGGACTCATCAAGATATGA 59.986 40.741 5.87 0.00 38.13 2.15
79 80 7.144661 GTGTGTCTAGGACTCATCAAGATATG 58.855 42.308 5.87 0.00 38.13 1.78
80 81 6.266558 GGTGTGTCTAGGACTCATCAAGATAT 59.733 42.308 7.75 0.00 37.20 1.63
81 82 5.594725 GGTGTGTCTAGGACTCATCAAGATA 59.405 44.000 7.75 0.00 37.20 1.98
82 83 4.404073 GGTGTGTCTAGGACTCATCAAGAT 59.596 45.833 7.75 0.00 37.20 2.40
83 84 3.764434 GGTGTGTCTAGGACTCATCAAGA 59.236 47.826 7.75 0.00 37.20 3.02
84 85 3.511540 TGGTGTGTCTAGGACTCATCAAG 59.488 47.826 11.57 0.00 41.88 3.02
85 86 3.506398 TGGTGTGTCTAGGACTCATCAA 58.494 45.455 11.57 0.00 41.88 2.57
86 87 3.169512 TGGTGTGTCTAGGACTCATCA 57.830 47.619 10.37 10.37 42.35 3.07
87 88 4.744795 AATGGTGTGTCTAGGACTCATC 57.255 45.455 5.87 6.03 38.13 2.92
88 89 6.139671 AGATAATGGTGTGTCTAGGACTCAT 58.860 40.000 5.87 0.00 38.13 2.90
89 90 5.519808 AGATAATGGTGTGTCTAGGACTCA 58.480 41.667 0.00 0.00 34.38 3.41
90 91 5.594725 TGAGATAATGGTGTGTCTAGGACTC 59.405 44.000 0.00 0.00 33.15 3.36
91 92 5.519808 TGAGATAATGGTGTGTCTAGGACT 58.480 41.667 0.00 0.00 33.15 3.85
92 93 5.854010 TGAGATAATGGTGTGTCTAGGAC 57.146 43.478 0.00 0.00 0.00 3.85
93 94 6.127054 CCTTTGAGATAATGGTGTGTCTAGGA 60.127 42.308 0.00 0.00 0.00 2.94
94 95 6.051717 CCTTTGAGATAATGGTGTGTCTAGG 58.948 44.000 0.00 0.00 0.00 3.02
95 96 5.525378 GCCTTTGAGATAATGGTGTGTCTAG 59.475 44.000 0.00 0.00 0.00 2.43
96 97 5.045942 TGCCTTTGAGATAATGGTGTGTCTA 60.046 40.000 0.00 0.00 0.00 2.59
97 98 4.263462 TGCCTTTGAGATAATGGTGTGTCT 60.263 41.667 0.00 0.00 0.00 3.41
98 99 4.009675 TGCCTTTGAGATAATGGTGTGTC 58.990 43.478 0.00 0.00 0.00 3.67
99 100 4.032960 TGCCTTTGAGATAATGGTGTGT 57.967 40.909 0.00 0.00 0.00 3.72
100 101 5.585390 GAATGCCTTTGAGATAATGGTGTG 58.415 41.667 0.00 0.00 0.00 3.82
101 102 4.336433 CGAATGCCTTTGAGATAATGGTGT 59.664 41.667 0.00 0.00 0.00 4.16
102 103 4.261322 CCGAATGCCTTTGAGATAATGGTG 60.261 45.833 0.00 0.00 0.00 4.17
103 104 3.885297 CCGAATGCCTTTGAGATAATGGT 59.115 43.478 0.00 0.00 0.00 3.55
104 105 3.254166 CCCGAATGCCTTTGAGATAATGG 59.746 47.826 0.00 0.00 0.00 3.16
105 106 3.885297 ACCCGAATGCCTTTGAGATAATG 59.115 43.478 0.00 0.00 0.00 1.90
106 107 3.885297 CACCCGAATGCCTTTGAGATAAT 59.115 43.478 0.00 0.00 0.00 1.28
107 108 3.278574 CACCCGAATGCCTTTGAGATAA 58.721 45.455 0.00 0.00 0.00 1.75
108 109 2.421388 CCACCCGAATGCCTTTGAGATA 60.421 50.000 0.00 0.00 0.00 1.98
109 110 1.683011 CCACCCGAATGCCTTTGAGAT 60.683 52.381 0.00 0.00 0.00 2.75
110 111 0.322456 CCACCCGAATGCCTTTGAGA 60.322 55.000 0.00 0.00 0.00 3.27
111 112 0.609131 ACCACCCGAATGCCTTTGAG 60.609 55.000 0.00 0.00 0.00 3.02
112 113 0.178975 AACCACCCGAATGCCTTTGA 60.179 50.000 0.00 0.00 0.00 2.69
113 114 0.243636 GAACCACCCGAATGCCTTTG 59.756 55.000 0.00 0.00 0.00 2.77
114 115 0.898326 GGAACCACCCGAATGCCTTT 60.898 55.000 0.00 0.00 0.00 3.11
115 116 1.304134 GGAACCACCCGAATGCCTT 60.304 57.895 0.00 0.00 0.00 4.35
116 117 0.912487 TAGGAACCACCCGAATGCCT 60.912 55.000 0.00 0.00 40.05 4.75
117 118 0.034863 TTAGGAACCACCCGAATGCC 60.035 55.000 0.00 0.00 40.05 4.40
118 119 1.092348 GTTAGGAACCACCCGAATGC 58.908 55.000 0.00 0.00 40.05 3.56
129 130 7.878644 AGTTCAAATCTTCTACAGGTTAGGAAC 59.121 37.037 0.00 0.00 38.82 3.62
130 131 7.974504 AGTTCAAATCTTCTACAGGTTAGGAA 58.025 34.615 0.00 0.00 0.00 3.36
131 132 7.554959 AGTTCAAATCTTCTACAGGTTAGGA 57.445 36.000 0.00 0.00 0.00 2.94
132 133 8.622948 AAAGTTCAAATCTTCTACAGGTTAGG 57.377 34.615 0.00 0.00 0.00 2.69
159 160 9.784531 TTTTCTGTGAACTTTGATTCTAGAGAT 57.215 29.630 0.00 0.00 30.03 2.75
160 161 9.784531 ATTTTCTGTGAACTTTGATTCTAGAGA 57.215 29.630 0.00 0.00 30.03 3.10
165 166 8.078596 GCAGTATTTTCTGTGAACTTTGATTCT 58.921 33.333 0.00 0.00 37.70 2.40
166 167 8.078596 AGCAGTATTTTCTGTGAACTTTGATTC 58.921 33.333 0.00 0.00 37.70 2.52
167 168 7.945134 AGCAGTATTTTCTGTGAACTTTGATT 58.055 30.769 0.00 0.00 37.70 2.57
168 169 7.516198 AGCAGTATTTTCTGTGAACTTTGAT 57.484 32.000 0.00 0.00 37.70 2.57
169 170 6.942532 AGCAGTATTTTCTGTGAACTTTGA 57.057 33.333 0.00 0.00 37.70 2.69
170 171 7.992180 AAAGCAGTATTTTCTGTGAACTTTG 57.008 32.000 0.00 0.00 37.70 2.77
171 172 7.492344 CCAAAAGCAGTATTTTCTGTGAACTTT 59.508 33.333 0.00 0.00 37.70 2.66
172 173 6.980397 CCAAAAGCAGTATTTTCTGTGAACTT 59.020 34.615 0.00 0.00 37.70 2.66
173 174 6.321181 TCCAAAAGCAGTATTTTCTGTGAACT 59.679 34.615 0.00 0.00 37.70 3.01
174 175 6.503524 TCCAAAAGCAGTATTTTCTGTGAAC 58.496 36.000 0.00 0.00 37.70 3.18
175 176 6.707440 TCCAAAAGCAGTATTTTCTGTGAA 57.293 33.333 0.00 0.00 37.70 3.18
176 177 6.716628 AGATCCAAAAGCAGTATTTTCTGTGA 59.283 34.615 0.00 0.00 37.70 3.58
177 178 6.805271 CAGATCCAAAAGCAGTATTTTCTGTG 59.195 38.462 0.00 0.00 37.70 3.66
178 179 6.571150 GCAGATCCAAAAGCAGTATTTTCTGT 60.571 38.462 0.00 0.00 37.70 3.41
179 180 5.803967 GCAGATCCAAAAGCAGTATTTTCTG 59.196 40.000 0.00 0.00 38.35 3.02
180 181 5.477984 TGCAGATCCAAAAGCAGTATTTTCT 59.522 36.000 0.00 0.00 30.01 2.52
181 182 5.713025 TGCAGATCCAAAAGCAGTATTTTC 58.287 37.500 0.00 0.00 30.01 2.29
182 183 5.717119 CTGCAGATCCAAAAGCAGTATTTT 58.283 37.500 8.42 0.00 46.92 1.82
183 184 5.320549 CTGCAGATCCAAAAGCAGTATTT 57.679 39.130 8.42 0.00 46.92 1.40
184 185 4.978083 CTGCAGATCCAAAAGCAGTATT 57.022 40.909 8.42 0.00 46.92 1.89
189 190 3.076079 TCATCTGCAGATCCAAAAGCA 57.924 42.857 26.44 0.00 35.43 3.91
190 191 5.472478 TGATATCATCTGCAGATCCAAAAGC 59.528 40.000 26.44 13.03 31.21 3.51
191 192 7.228906 ACTTGATATCATCTGCAGATCCAAAAG 59.771 37.037 26.44 22.83 31.21 2.27
192 193 7.058525 ACTTGATATCATCTGCAGATCCAAAA 58.941 34.615 26.44 14.21 31.21 2.44
193 194 6.598503 ACTTGATATCATCTGCAGATCCAAA 58.401 36.000 26.44 12.44 31.21 3.28
194 195 6.183810 ACTTGATATCATCTGCAGATCCAA 57.816 37.500 26.44 20.34 31.21 3.53
195 196 5.820404 ACTTGATATCATCTGCAGATCCA 57.180 39.130 26.44 16.05 31.21 3.41
278 279 9.656323 TCTTCTAAGCCCTAGAGATAATACAAA 57.344 33.333 0.00 0.00 37.93 2.83
279 280 9.830186 ATCTTCTAAGCCCTAGAGATAATACAA 57.170 33.333 0.00 0.00 37.93 2.41
280 281 9.249053 CATCTTCTAAGCCCTAGAGATAATACA 57.751 37.037 0.00 0.00 37.93 2.29
281 282 8.691797 CCATCTTCTAAGCCCTAGAGATAATAC 58.308 40.741 0.00 0.00 37.93 1.89
282 283 8.402683 ACCATCTTCTAAGCCCTAGAGATAATA 58.597 37.037 0.00 0.00 37.93 0.98
283 284 7.252678 ACCATCTTCTAAGCCCTAGAGATAAT 58.747 38.462 0.00 0.00 37.93 1.28
284 285 6.625267 ACCATCTTCTAAGCCCTAGAGATAA 58.375 40.000 0.00 0.00 37.93 1.75
285 286 6.220881 ACCATCTTCTAAGCCCTAGAGATA 57.779 41.667 0.00 0.00 37.93 1.98
286 287 5.086598 ACCATCTTCTAAGCCCTAGAGAT 57.913 43.478 0.00 0.00 37.93 2.75
287 288 4.544564 ACCATCTTCTAAGCCCTAGAGA 57.455 45.455 0.00 0.00 37.93 3.10
288 289 4.898861 AGAACCATCTTCTAAGCCCTAGAG 59.101 45.833 0.00 0.00 37.93 2.43
289 290 4.884961 AGAACCATCTTCTAAGCCCTAGA 58.115 43.478 0.00 0.00 34.66 2.43
290 291 6.732896 TTAGAACCATCTTCTAAGCCCTAG 57.267 41.667 0.00 0.00 36.43 3.02
291 292 6.464465 GCATTAGAACCATCTTCTAAGCCCTA 60.464 42.308 8.18 0.00 42.27 3.53
292 293 5.688766 GCATTAGAACCATCTTCTAAGCCCT 60.689 44.000 8.18 0.00 42.27 5.19
293 294 4.517075 GCATTAGAACCATCTTCTAAGCCC 59.483 45.833 8.18 0.00 42.27 5.19
294 295 5.372373 AGCATTAGAACCATCTTCTAAGCC 58.628 41.667 8.18 3.06 42.27 4.35
295 296 6.540189 TGAAGCATTAGAACCATCTTCTAAGC 59.460 38.462 8.18 10.35 42.27 3.09
296 297 8.674263 ATGAAGCATTAGAACCATCTTCTAAG 57.326 34.615 8.18 3.34 42.27 2.18
297 298 8.267183 TGATGAAGCATTAGAACCATCTTCTAA 58.733 33.333 5.28 5.28 42.90 2.10
298 299 7.795047 TGATGAAGCATTAGAACCATCTTCTA 58.205 34.615 0.00 0.00 37.10 2.10
299 300 6.656902 TGATGAAGCATTAGAACCATCTTCT 58.343 36.000 0.00 0.00 37.10 2.85
300 301 6.932356 TGATGAAGCATTAGAACCATCTTC 57.068 37.500 0.00 0.00 37.10 2.87
301 302 6.183360 CGTTGATGAAGCATTAGAACCATCTT 60.183 38.462 0.00 0.00 37.10 2.40
302 303 5.295292 CGTTGATGAAGCATTAGAACCATCT 59.705 40.000 0.00 0.00 39.82 2.90
303 304 5.294306 TCGTTGATGAAGCATTAGAACCATC 59.706 40.000 0.00 0.00 0.00 3.51
304 305 5.185454 TCGTTGATGAAGCATTAGAACCAT 58.815 37.500 0.00 0.00 0.00 3.55
305 306 4.574892 TCGTTGATGAAGCATTAGAACCA 58.425 39.130 0.00 0.00 0.00 3.67
306 307 5.106712 TGTTCGTTGATGAAGCATTAGAACC 60.107 40.000 0.00 0.00 35.83 3.62
307 308 5.927030 TGTTCGTTGATGAAGCATTAGAAC 58.073 37.500 0.00 0.00 36.83 3.01
308 309 6.552859 TTGTTCGTTGATGAAGCATTAGAA 57.447 33.333 0.00 0.00 0.00 2.10
309 310 6.552859 TTTGTTCGTTGATGAAGCATTAGA 57.447 33.333 0.00 0.00 0.00 2.10
310 311 7.621832 TTTTTGTTCGTTGATGAAGCATTAG 57.378 32.000 0.00 0.00 0.00 1.73
311 312 8.081633 AGATTTTTGTTCGTTGATGAAGCATTA 58.918 29.630 0.00 0.00 0.00 1.90
312 313 6.925165 AGATTTTTGTTCGTTGATGAAGCATT 59.075 30.769 0.00 0.00 0.00 3.56
313 314 6.449698 AGATTTTTGTTCGTTGATGAAGCAT 58.550 32.000 0.00 0.00 0.00 3.79
314 315 5.830912 AGATTTTTGTTCGTTGATGAAGCA 58.169 33.333 0.00 0.00 0.00 3.91
315 316 6.753897 AAGATTTTTGTTCGTTGATGAAGC 57.246 33.333 0.00 0.00 0.00 3.86
316 317 9.611284 TCATAAGATTTTTGTTCGTTGATGAAG 57.389 29.630 0.00 0.00 0.00 3.02
317 318 9.958234 TTCATAAGATTTTTGTTCGTTGATGAA 57.042 25.926 0.00 0.00 0.00 2.57
318 319 9.611284 CTTCATAAGATTTTTGTTCGTTGATGA 57.389 29.630 0.00 0.00 0.00 2.92
319 320 8.853345 CCTTCATAAGATTTTTGTTCGTTGATG 58.147 33.333 0.00 0.00 0.00 3.07
320 321 8.792633 TCCTTCATAAGATTTTTGTTCGTTGAT 58.207 29.630 0.00 0.00 0.00 2.57
321 322 8.160521 TCCTTCATAAGATTTTTGTTCGTTGA 57.839 30.769 0.00 0.00 0.00 3.18
322 323 7.538678 CCTCCTTCATAAGATTTTTGTTCGTTG 59.461 37.037 0.00 0.00 0.00 4.10
323 324 7.447238 TCCTCCTTCATAAGATTTTTGTTCGTT 59.553 33.333 0.00 0.00 0.00 3.85
324 325 6.940298 TCCTCCTTCATAAGATTTTTGTTCGT 59.060 34.615 0.00 0.00 0.00 3.85
325 326 7.094805 TGTCCTCCTTCATAAGATTTTTGTTCG 60.095 37.037 0.00 0.00 0.00 3.95
326 327 8.110860 TGTCCTCCTTCATAAGATTTTTGTTC 57.889 34.615 0.00 0.00 0.00 3.18
327 328 8.526147 CATGTCCTCCTTCATAAGATTTTTGTT 58.474 33.333 0.00 0.00 0.00 2.83
328 329 7.671398 ACATGTCCTCCTTCATAAGATTTTTGT 59.329 33.333 0.00 0.00 0.00 2.83
329 330 8.059798 ACATGTCCTCCTTCATAAGATTTTTG 57.940 34.615 0.00 0.00 0.00 2.44
330 331 9.927081 ATACATGTCCTCCTTCATAAGATTTTT 57.073 29.630 0.00 0.00 0.00 1.94
333 334 8.307483 CGTATACATGTCCTCCTTCATAAGATT 58.693 37.037 0.00 0.00 0.00 2.40
334 335 7.093727 CCGTATACATGTCCTCCTTCATAAGAT 60.094 40.741 0.00 0.00 0.00 2.40
335 336 6.208797 CCGTATACATGTCCTCCTTCATAAGA 59.791 42.308 0.00 0.00 0.00 2.10
336 337 6.208797 TCCGTATACATGTCCTCCTTCATAAG 59.791 42.308 0.00 0.00 0.00 1.73
337 338 6.072649 TCCGTATACATGTCCTCCTTCATAA 58.927 40.000 0.00 0.00 0.00 1.90
338 339 5.637127 TCCGTATACATGTCCTCCTTCATA 58.363 41.667 0.00 0.00 0.00 2.15
339 340 4.480115 TCCGTATACATGTCCTCCTTCAT 58.520 43.478 0.00 0.00 0.00 2.57
340 341 3.889538 CTCCGTATACATGTCCTCCTTCA 59.110 47.826 0.00 0.00 0.00 3.02
341 342 4.142790 TCTCCGTATACATGTCCTCCTTC 58.857 47.826 0.00 0.00 0.00 3.46
342 343 4.180377 TCTCCGTATACATGTCCTCCTT 57.820 45.455 0.00 0.00 0.00 3.36
343 344 3.878237 TCTCCGTATACATGTCCTCCT 57.122 47.619 0.00 0.00 0.00 3.69
344 345 6.405953 CCAATATCTCCGTATACATGTCCTCC 60.406 46.154 0.00 0.00 0.00 4.30
345 346 6.377429 TCCAATATCTCCGTATACATGTCCTC 59.623 42.308 0.00 0.00 0.00 3.71
346 347 6.253758 TCCAATATCTCCGTATACATGTCCT 58.746 40.000 0.00 0.00 0.00 3.85
347 348 6.525578 TCCAATATCTCCGTATACATGTCC 57.474 41.667 0.00 0.00 0.00 4.02
348 349 7.489435 CACATCCAATATCTCCGTATACATGTC 59.511 40.741 0.00 0.00 0.00 3.06
349 350 7.178451 TCACATCCAATATCTCCGTATACATGT 59.822 37.037 2.69 2.69 0.00 3.21
350 351 7.547227 TCACATCCAATATCTCCGTATACATG 58.453 38.462 3.32 0.00 0.00 3.21
351 352 7.718334 TCACATCCAATATCTCCGTATACAT 57.282 36.000 3.32 0.00 0.00 2.29
352 353 7.396055 TCATCACATCCAATATCTCCGTATACA 59.604 37.037 3.32 0.00 0.00 2.29
353 354 7.772166 TCATCACATCCAATATCTCCGTATAC 58.228 38.462 0.00 0.00 0.00 1.47
354 355 7.954666 TCATCACATCCAATATCTCCGTATA 57.045 36.000 0.00 0.00 0.00 1.47
355 356 6.857437 TCATCACATCCAATATCTCCGTAT 57.143 37.500 0.00 0.00 0.00 3.06
356 357 6.437162 TCATCATCACATCCAATATCTCCGTA 59.563 38.462 0.00 0.00 0.00 4.02
357 358 5.246883 TCATCATCACATCCAATATCTCCGT 59.753 40.000 0.00 0.00 0.00 4.69
358 359 5.727434 TCATCATCACATCCAATATCTCCG 58.273 41.667 0.00 0.00 0.00 4.63
359 360 6.542735 CCATCATCATCACATCCAATATCTCC 59.457 42.308 0.00 0.00 0.00 3.71
360 361 7.280428 GTCCATCATCATCACATCCAATATCTC 59.720 40.741 0.00 0.00 0.00 2.75
361 362 7.110810 GTCCATCATCATCACATCCAATATCT 58.889 38.462 0.00 0.00 0.00 1.98
362 363 6.036844 CGTCCATCATCATCACATCCAATATC 59.963 42.308 0.00 0.00 0.00 1.63
363 364 5.878669 CGTCCATCATCATCACATCCAATAT 59.121 40.000 0.00 0.00 0.00 1.28
364 365 5.011943 TCGTCCATCATCATCACATCCAATA 59.988 40.000 0.00 0.00 0.00 1.90
365 366 4.070009 CGTCCATCATCATCACATCCAAT 58.930 43.478 0.00 0.00 0.00 3.16
366 367 3.134442 TCGTCCATCATCATCACATCCAA 59.866 43.478 0.00 0.00 0.00 3.53
367 368 2.699846 TCGTCCATCATCATCACATCCA 59.300 45.455 0.00 0.00 0.00 3.41
368 369 3.324117 CTCGTCCATCATCATCACATCC 58.676 50.000 0.00 0.00 0.00 3.51
369 370 3.244009 ACCTCGTCCATCATCATCACATC 60.244 47.826 0.00 0.00 0.00 3.06
370 371 2.702478 ACCTCGTCCATCATCATCACAT 59.298 45.455 0.00 0.00 0.00 3.21
371 372 2.110578 ACCTCGTCCATCATCATCACA 58.889 47.619 0.00 0.00 0.00 3.58
372 373 2.898729 ACCTCGTCCATCATCATCAC 57.101 50.000 0.00 0.00 0.00 3.06
373 374 4.151883 TCATACCTCGTCCATCATCATCA 58.848 43.478 0.00 0.00 0.00 3.07
374 375 4.790765 TCATACCTCGTCCATCATCATC 57.209 45.455 0.00 0.00 0.00 2.92
375 376 4.622457 GCATCATACCTCGTCCATCATCAT 60.622 45.833 0.00 0.00 0.00 2.45
376 377 3.306294 GCATCATACCTCGTCCATCATCA 60.306 47.826 0.00 0.00 0.00 3.07
377 378 3.257393 GCATCATACCTCGTCCATCATC 58.743 50.000 0.00 0.00 0.00 2.92
378 379 2.027745 GGCATCATACCTCGTCCATCAT 60.028 50.000 0.00 0.00 0.00 2.45
379 380 1.344438 GGCATCATACCTCGTCCATCA 59.656 52.381 0.00 0.00 0.00 3.07
380 381 1.620819 AGGCATCATACCTCGTCCATC 59.379 52.381 0.00 0.00 28.76 3.51
381 382 1.722034 AGGCATCATACCTCGTCCAT 58.278 50.000 0.00 0.00 28.76 3.41
382 383 1.496060 AAGGCATCATACCTCGTCCA 58.504 50.000 0.00 0.00 36.14 4.02
383 384 3.589988 CATAAGGCATCATACCTCGTCC 58.410 50.000 0.00 0.00 36.14 4.79
384 385 2.996621 GCATAAGGCATCATACCTCGTC 59.003 50.000 0.00 0.00 43.97 4.20
385 386 2.610479 CGCATAAGGCATCATACCTCGT 60.610 50.000 0.00 0.00 45.17 4.18
386 387 1.995484 CGCATAAGGCATCATACCTCG 59.005 52.381 0.00 0.00 45.17 4.63
387 388 3.319137 TCGCATAAGGCATCATACCTC 57.681 47.619 0.00 0.00 45.17 3.85
388 389 3.988976 ATCGCATAAGGCATCATACCT 57.011 42.857 0.00 0.00 45.17 3.08
389 390 5.178797 ACTTATCGCATAAGGCATCATACC 58.821 41.667 15.67 0.00 45.05 2.73
390 391 8.331022 CAATACTTATCGCATAAGGCATCATAC 58.669 37.037 15.67 0.00 45.05 2.39
391 392 8.040727 ACAATACTTATCGCATAAGGCATCATA 58.959 33.333 15.67 3.99 45.05 2.15
392 393 6.881065 ACAATACTTATCGCATAAGGCATCAT 59.119 34.615 15.67 2.47 45.05 2.45
393 394 6.230472 ACAATACTTATCGCATAAGGCATCA 58.770 36.000 15.67 2.42 45.05 3.07
394 395 6.183360 GGACAATACTTATCGCATAAGGCATC 60.183 42.308 15.67 8.63 45.05 3.91
395 396 5.643777 GGACAATACTTATCGCATAAGGCAT 59.356 40.000 15.67 8.77 45.05 4.40
396 397 4.994852 GGACAATACTTATCGCATAAGGCA 59.005 41.667 15.67 7.42 45.05 4.75
397 398 5.238583 AGGACAATACTTATCGCATAAGGC 58.761 41.667 15.67 0.00 45.05 4.35
398 399 7.542477 CAGTAGGACAATACTTATCGCATAAGG 59.458 40.741 15.67 5.33 45.05 2.69
399 400 7.542477 CCAGTAGGACAATACTTATCGCATAAG 59.458 40.741 11.86 11.86 41.86 1.73
400 401 7.231925 TCCAGTAGGACAATACTTATCGCATAA 59.768 37.037 0.00 0.00 39.61 1.90
401 402 6.717997 TCCAGTAGGACAATACTTATCGCATA 59.282 38.462 0.00 0.00 39.61 3.14
402 403 5.538813 TCCAGTAGGACAATACTTATCGCAT 59.461 40.000 0.00 0.00 39.61 4.73
403 404 4.891168 TCCAGTAGGACAATACTTATCGCA 59.109 41.667 0.00 0.00 39.61 5.10
404 405 5.449107 TCCAGTAGGACAATACTTATCGC 57.551 43.478 0.00 0.00 39.61 4.58
405 406 7.040473 ACTTCCAGTAGGACAATACTTATCG 57.960 40.000 0.00 0.00 45.73 2.92
406 407 8.083462 GCTACTTCCAGTAGGACAATACTTATC 58.917 40.741 11.93 0.00 46.31 1.75
407 408 7.563924 TGCTACTTCCAGTAGGACAATACTTAT 59.436 37.037 11.93 0.00 46.31 1.73
408 409 6.893554 TGCTACTTCCAGTAGGACAATACTTA 59.106 38.462 11.93 0.00 46.31 2.24
409 410 5.720041 TGCTACTTCCAGTAGGACAATACTT 59.280 40.000 11.93 0.00 46.31 2.24
410 411 5.269991 TGCTACTTCCAGTAGGACAATACT 58.730 41.667 11.93 0.00 46.31 2.12
411 412 5.593679 TGCTACTTCCAGTAGGACAATAC 57.406 43.478 11.93 0.00 46.31 1.89
418 419 2.093500 TGCACATGCTACTTCCAGTAGG 60.093 50.000 11.93 0.06 46.31 3.18
420 421 3.452264 AGATGCACATGCTACTTCCAGTA 59.548 43.478 5.31 0.00 42.66 2.74
421 422 2.238144 AGATGCACATGCTACTTCCAGT 59.762 45.455 5.31 0.00 42.66 4.00
422 423 2.915349 AGATGCACATGCTACTTCCAG 58.085 47.619 5.31 0.00 42.66 3.86
423 424 3.354948 AAGATGCACATGCTACTTCCA 57.645 42.857 5.31 0.00 42.66 3.53
424 425 4.708726 AAAAGATGCACATGCTACTTCC 57.291 40.909 5.31 0.00 42.66 3.46
425 426 9.443283 CTATTTAAAAGATGCACATGCTACTTC 57.557 33.333 5.31 0.00 42.66 3.01
426 427 7.917505 GCTATTTAAAAGATGCACATGCTACTT 59.082 33.333 5.31 7.67 42.66 2.24
427 428 7.284034 AGCTATTTAAAAGATGCACATGCTACT 59.716 33.333 5.31 1.85 42.66 2.57
428 429 7.420800 AGCTATTTAAAAGATGCACATGCTAC 58.579 34.615 5.31 0.00 42.66 3.58
429 430 7.572523 AGCTATTTAAAAGATGCACATGCTA 57.427 32.000 5.31 0.00 42.66 3.49
430 431 6.461110 AGCTATTTAAAAGATGCACATGCT 57.539 33.333 5.31 0.00 42.66 3.79
449 450 9.725019 CACATGGTTTTCCTCAATATATAGCTA 57.275 33.333 0.00 0.00 41.38 3.32
450 451 8.220559 ACACATGGTTTTCCTCAATATATAGCT 58.779 33.333 0.00 0.00 41.38 3.32
451 452 8.292448 CACACATGGTTTTCCTCAATATATAGC 58.708 37.037 0.00 0.00 41.38 2.97
452 453 9.559732 TCACACATGGTTTTCCTCAATATATAG 57.440 33.333 0.00 0.00 41.38 1.31
454 455 9.425248 AATCACACATGGTTTTCCTCAATATAT 57.575 29.630 0.00 0.00 41.38 0.86
455 456 8.821686 AATCACACATGGTTTTCCTCAATATA 57.178 30.769 0.00 0.00 41.38 0.86
456 457 7.722949 AATCACACATGGTTTTCCTCAATAT 57.277 32.000 0.00 0.00 41.38 1.28
457 458 7.537596 AAATCACACATGGTTTTCCTCAATA 57.462 32.000 0.00 0.00 35.52 1.90
458 459 6.423776 AAATCACACATGGTTTTCCTCAAT 57.576 33.333 0.00 0.00 35.52 2.57
459 460 5.867903 AAATCACACATGGTTTTCCTCAA 57.132 34.783 0.00 0.00 35.52 3.02
460 461 6.514212 CGTTAAATCACACATGGTTTTCCTCA 60.514 38.462 0.00 0.00 39.86 3.86
461 462 5.856455 CGTTAAATCACACATGGTTTTCCTC 59.144 40.000 0.00 0.00 39.86 3.71
462 463 5.768317 CGTTAAATCACACATGGTTTTCCT 58.232 37.500 0.00 0.00 39.86 3.36
463 464 4.384547 GCGTTAAATCACACATGGTTTTCC 59.615 41.667 0.00 0.00 39.86 3.13
464 465 4.384547 GGCGTTAAATCACACATGGTTTTC 59.615 41.667 0.00 0.00 39.86 2.29
465 466 4.038642 AGGCGTTAAATCACACATGGTTTT 59.961 37.500 0.00 0.00 39.86 2.43
466 467 3.572255 AGGCGTTAAATCACACATGGTTT 59.428 39.130 0.00 0.00 42.05 3.27
467 468 3.153919 AGGCGTTAAATCACACATGGTT 58.846 40.909 0.00 0.00 0.00 3.67
468 469 2.747446 GAGGCGTTAAATCACACATGGT 59.253 45.455 0.00 0.00 0.00 3.55
469 470 3.009723 AGAGGCGTTAAATCACACATGG 58.990 45.455 0.00 0.00 0.00 3.66
470 471 3.684305 TGAGAGGCGTTAAATCACACATG 59.316 43.478 0.00 0.00 0.00 3.21
471 472 3.935203 CTGAGAGGCGTTAAATCACACAT 59.065 43.478 0.00 0.00 0.00 3.21
472 473 3.325870 CTGAGAGGCGTTAAATCACACA 58.674 45.455 0.00 0.00 0.00 3.72
473 474 2.673368 CCTGAGAGGCGTTAAATCACAC 59.327 50.000 0.00 0.00 0.00 3.82
474 475 2.565391 TCCTGAGAGGCGTTAAATCACA 59.435 45.455 0.00 0.00 34.61 3.58
475 476 3.247006 TCCTGAGAGGCGTTAAATCAC 57.753 47.619 0.00 0.00 34.61 3.06
476 477 3.861840 CTTCCTGAGAGGCGTTAAATCA 58.138 45.455 0.00 0.00 34.61 2.57
477 478 2.609916 GCTTCCTGAGAGGCGTTAAATC 59.390 50.000 0.00 0.00 35.17 2.17
478 479 2.633488 GCTTCCTGAGAGGCGTTAAAT 58.367 47.619 0.00 0.00 35.17 1.40
479 480 1.338769 GGCTTCCTGAGAGGCGTTAAA 60.339 52.381 0.00 0.00 45.73 1.52
480 481 0.249398 GGCTTCCTGAGAGGCGTTAA 59.751 55.000 0.00 0.00 45.73 2.01
481 482 1.614241 GGGCTTCCTGAGAGGCGTTA 61.614 60.000 0.00 0.00 45.73 3.18
482 483 2.665603 GGCTTCCTGAGAGGCGTT 59.334 61.111 0.00 0.00 45.73 4.84
483 484 3.394836 GGGCTTCCTGAGAGGCGT 61.395 66.667 0.00 0.00 45.73 5.68
484 485 4.521062 CGGGCTTCCTGAGAGGCG 62.521 72.222 0.00 0.00 45.73 5.52
485 486 4.847444 GCGGGCTTCCTGAGAGGC 62.847 72.222 0.00 0.00 44.11 4.70
486 487 4.521062 CGCGGGCTTCCTGAGAGG 62.521 72.222 0.00 0.00 36.46 3.69
487 488 4.521062 CCGCGGGCTTCCTGAGAG 62.521 72.222 20.10 0.00 31.17 3.20
489 490 4.821589 GACCGCGGGCTTCCTGAG 62.822 72.222 31.76 0.00 29.82 3.35
493 494 3.843117 CTATCGACCGCGGGCTTCC 62.843 68.421 31.71 11.37 38.28 3.46
494 495 2.354773 CTATCGACCGCGGGCTTC 60.355 66.667 31.71 17.17 38.28 3.86
495 496 4.587189 GCTATCGACCGCGGGCTT 62.587 66.667 31.71 19.32 38.28 4.35
502 503 2.459421 AATCGCCTCGCTATCGACCG 62.459 60.000 0.00 0.00 40.21 4.79
503 504 0.318784 AAATCGCCTCGCTATCGACC 60.319 55.000 0.00 0.00 40.21 4.79
504 505 0.778815 CAAATCGCCTCGCTATCGAC 59.221 55.000 0.00 0.00 40.21 4.20
505 506 0.666374 TCAAATCGCCTCGCTATCGA 59.334 50.000 0.00 0.00 43.28 3.59
506 507 0.778815 GTCAAATCGCCTCGCTATCG 59.221 55.000 0.00 0.00 0.00 2.92
507 508 0.778815 CGTCAAATCGCCTCGCTATC 59.221 55.000 0.00 0.00 0.00 2.08
508 509 2.886859 CGTCAAATCGCCTCGCTAT 58.113 52.632 0.00 0.00 0.00 2.97
509 510 4.395080 CGTCAAATCGCCTCGCTA 57.605 55.556 0.00 0.00 0.00 4.26
572 577 1.567504 AGACTTGAACGTGACAACCG 58.432 50.000 0.00 0.00 0.00 4.44
575 580 7.924412 AGATAAAAGTAGACTTGAACGTGACAA 59.076 33.333 7.91 7.91 36.12 3.18
622 630 0.529119 GTCAACGAGTCAACCACCGT 60.529 55.000 0.00 0.00 34.54 4.83
652 661 1.560923 AATCAGCTGATACACGCGAC 58.439 50.000 28.92 0.00 33.73 5.19
709 945 0.870393 CGATGGCATCATACCACTGC 59.130 55.000 25.88 0.00 40.82 4.40
710 946 2.531522 TCGATGGCATCATACCACTG 57.468 50.000 25.88 8.18 40.82 3.66
711 947 2.634453 TCATCGATGGCATCATACCACT 59.366 45.455 25.88 0.63 40.82 4.00
712 948 2.738846 GTCATCGATGGCATCATACCAC 59.261 50.000 24.64 11.95 40.82 4.16
713 949 2.610232 CGTCATCGATGGCATCATACCA 60.610 50.000 28.07 1.41 42.61 3.25
714 950 1.995484 CGTCATCGATGGCATCATACC 59.005 52.381 28.07 9.20 39.71 2.73
849 1131 6.987386 AGGAGACGGAATAAATAGATGACTG 58.013 40.000 0.00 0.00 0.00 3.51
927 1222 2.237534 GAGCTGAGAGTGGAGTGGCC 62.238 65.000 0.00 0.00 37.10 5.36
983 1278 3.308401 TCCATGATTCTTCTGGATCCGA 58.692 45.455 7.39 4.69 34.17 4.55
984 1279 3.758755 TCCATGATTCTTCTGGATCCG 57.241 47.619 7.39 2.06 34.17 4.18
985 1280 5.008980 GGAATCCATGATTCTTCTGGATCC 58.991 45.833 4.20 4.20 46.57 3.36
986 1281 5.008980 GGGAATCCATGATTCTTCTGGATC 58.991 45.833 14.51 8.82 46.57 3.36
988 1283 4.050037 AGGGAATCCATGATTCTTCTGGA 58.950 43.478 14.51 5.90 45.30 3.86
989 1284 4.141321 TCAGGGAATCCATGATTCTTCTGG 60.141 45.833 13.12 14.33 45.30 3.86
990 1285 4.820716 GTCAGGGAATCCATGATTCTTCTG 59.179 45.833 20.03 20.95 45.30 3.02
991 1286 4.444022 CGTCAGGGAATCCATGATTCTTCT 60.444 45.833 20.03 10.42 45.30 2.85
992 1287 3.812053 CGTCAGGGAATCCATGATTCTTC 59.188 47.826 20.03 5.72 45.30 2.87
993 1288 3.434167 CCGTCAGGGAATCCATGATTCTT 60.434 47.826 20.03 3.61 45.30 2.52
994 1289 2.105477 CCGTCAGGGAATCCATGATTCT 59.895 50.000 20.03 0.00 45.30 2.40
1053 1348 3.854669 CGGAGGGAGCCGCAGAAT 61.855 66.667 0.00 0.00 45.38 2.40
1185 1571 1.153469 CTCCTCGCAAAGCTCCTCC 60.153 63.158 0.00 0.00 0.00 4.30
1194 1580 2.721167 CGGGATGGACTCCTCGCAA 61.721 63.158 0.00 0.00 44.28 4.85
1335 1721 0.902516 AGGCGAAGAGGAAGCAGTCT 60.903 55.000 0.00 0.00 0.00 3.24
1380 1766 2.048127 GCGTTCTTCAGGGACGCT 60.048 61.111 5.10 0.00 45.01 5.07
1685 2071 1.609072 CTTGAGTCAGTCAGTCGTCCA 59.391 52.381 0.00 0.00 36.21 4.02
1700 2097 5.331098 CAGGTATCATCGATCGATCTTGAG 58.669 45.833 27.20 15.83 31.62 3.02
1701 2098 4.156739 CCAGGTATCATCGATCGATCTTGA 59.843 45.833 27.20 22.72 31.62 3.02
1702 2099 4.419280 CCAGGTATCATCGATCGATCTTG 58.581 47.826 27.20 20.27 31.62 3.02
1703 2100 3.119316 GCCAGGTATCATCGATCGATCTT 60.119 47.826 27.20 18.82 31.62 2.40
1704 2101 2.425312 GCCAGGTATCATCGATCGATCT 59.575 50.000 27.20 17.64 31.62 2.75
1705 2102 2.425312 AGCCAGGTATCATCGATCGATC 59.575 50.000 27.20 15.68 31.62 3.69
1706 2103 2.425312 GAGCCAGGTATCATCGATCGAT 59.575 50.000 24.60 24.60 34.81 3.59
1707 2104 1.813178 GAGCCAGGTATCATCGATCGA 59.187 52.381 21.86 21.86 0.00 3.59
1708 2105 1.815613 AGAGCCAGGTATCATCGATCG 59.184 52.381 9.36 9.36 0.00 3.69
1721 2128 1.738099 GCACGGTACACAGAGCCAG 60.738 63.158 0.00 0.00 0.00 4.85
1786 2195 4.498513 CGGAACCACGAATACTAGTGCATA 60.499 45.833 5.39 0.00 37.07 3.14
1787 2196 3.737047 CGGAACCACGAATACTAGTGCAT 60.737 47.826 5.39 0.00 37.07 3.96
1818 2237 6.314784 GCTTTATTACACAAAGGTAGCACAG 58.685 40.000 0.00 0.00 34.28 3.66
1831 2250 2.086934 GCTTCGGCGCTTTATTACAC 57.913 50.000 7.64 0.00 0.00 2.90
1860 2279 9.072294 CAATTCTTCGGCGATTTATTACTTTTT 57.928 29.630 11.76 0.00 0.00 1.94
1861 2280 7.220108 GCAATTCTTCGGCGATTTATTACTTTT 59.780 33.333 11.76 0.00 0.00 2.27
1862 2281 6.691388 GCAATTCTTCGGCGATTTATTACTTT 59.309 34.615 11.76 0.00 0.00 2.66
1863 2282 6.183360 TGCAATTCTTCGGCGATTTATTACTT 60.183 34.615 11.76 0.00 0.00 2.24
1864 2283 5.295787 TGCAATTCTTCGGCGATTTATTACT 59.704 36.000 11.76 0.00 0.00 2.24
1930 2531 3.068307 CCCTTGCGTTCTACTAGTAGCAT 59.932 47.826 22.87 0.00 34.44 3.79
1948 2549 4.891727 CGTAGCCGATGCGCCCTT 62.892 66.667 4.18 0.00 44.33 3.95
1960 2561 7.010023 CAGTTCTATTGTTTTCTCAACGTAGC 58.990 38.462 0.00 0.00 0.00 3.58
1964 2565 7.406553 TCAACAGTTCTATTGTTTTCTCAACG 58.593 34.615 0.00 0.00 36.67 4.10
2056 2961 6.260936 CGCCTTTCTAAACAGGATACAATCAT 59.739 38.462 0.00 0.00 41.41 2.45
2102 3007 7.497249 CGTGAGGAGAATCTTATTCCATTTTCT 59.503 37.037 0.00 0.00 33.32 2.52
2106 3011 6.051717 CACGTGAGGAGAATCTTATTCCATT 58.948 40.000 10.90 0.00 33.32 3.16
2117 3022 1.187087 GGGAGTCACGTGAGGAGAAT 58.813 55.000 20.73 0.00 0.00 2.40
2135 3040 1.515088 CTACGCAGCACTGAGACGG 60.515 63.158 8.44 0.00 34.42 4.79
2140 3045 4.435436 CCGCCTACGCAGCACTGA 62.435 66.667 0.81 0.00 38.22 3.41
2146 3051 4.647615 CGGGATCCGCCTACGCAG 62.648 72.222 5.45 0.00 41.17 5.18
2207 3112 3.804325 CGAACACACACAGATGAAGACTT 59.196 43.478 0.00 0.00 0.00 3.01
2208 3113 3.181475 ACGAACACACACAGATGAAGACT 60.181 43.478 0.00 0.00 0.00 3.24
2221 3126 5.288712 CCAATCTATAGACACACGAACACAC 59.711 44.000 4.10 0.00 0.00 3.82
2232 3137 7.782897 ATCGAAAGGATCCAATCTATAGACA 57.217 36.000 15.82 0.00 0.00 3.41
2292 3197 2.568956 AGACCACACATGACTAGTGCAT 59.431 45.455 0.00 0.78 40.59 3.96
2397 3306 0.035152 ACGAGCAATGGAATGAGCCA 60.035 50.000 0.00 0.00 43.23 4.75
2403 3312 2.794910 CGACGATTACGAGCAATGGAAT 59.205 45.455 0.00 0.00 42.66 3.01
2666 3580 8.258007 CAGGTCATTTTAACCACTCACTCTATA 58.742 37.037 0.00 0.00 39.39 1.31


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.