>input_sequence_71483
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--------------ATGGATTCCCTGACGGCGTCGACGACGGCGAAGCCCACCCTCCGAGTGGCCGCATTCTGCGGCTCC
CTCCGCAAGGACTCGTGGCACCGCGGCCTCATCCGCGCCGGTACGCACAATTCATCACCAATCACCATG-----GTTGCC
TAGCTCGC----TTGCTAATTATGCACCGCTGAGT--------------------------------TGA----TCG---
-------------------------------------------ATGTAGCGGAGGAGCTTTGCGAGGAGTCCATCCCGGG
GCTGCGCATCGACCACGTGGACATCTCCGGCCTGCCCATGGTCAACCCGGACCTGGAGACCGACGGCGGCAAGGGCTTCC
CGCCGGCCGTGGAGGCGCTCCGCGACAGCGTCCGCGCCGCAGACTGCTTCCTCTTCGCCTCGCCCGAGTACAACTACTCG
GTCACAGCGTCCCTGAAGAACGCGCTGGACTGGGCGTCGAGGGGCAAGCGCAACTGCTGGGCGGACAGGGCGGCGGCGAT
CGTGTGCGCGGGGGGCGACTTCGGCGGGGCCAGGGCGTCGCTCCACCTCCGCCAGATCGGGGTGTTCCTCGACCTCCACT
TCATCAACAAGCCGGAGCTCCACGTGAGGGCGTTTGCGGAGCCGCCCAAGTTCGACGAGGAGGGGAACCTCATCGACGCC
GAGACCAGGGAGCGGCTCAGGAAGGTGCTCCTCTCGCTCCAGGCCTTCGCGCTCAGGCTCCAGCACAACATGGAC-----
--G----ACTGA--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------
>chr3D_1_TraesCS3D01G104400
AACAAACAATAAGTCTGGGCAAGTTTGTTTTTCTCTTGATGTGGGGGTGATGTCATACTTAAATGTGACATAGTTATGTC
ATATCTTGATGAGTCCTAGACACACCATTATCTCAAAGGCATTCGGGTGGTTCCTAACCTGTAGAAGATTTGAACTTTTA
TCTCTAGAATCAAAGTTCACAGAAAATACTGCTTTTGGATCTGCAGATGATATCAAGTAATATACTGAATCTTCTGTTAA
ACAGTCTTCTCATATAGTTTATGAAACTTAACTCATTATTTGTATTATCTCTAGGGCTTAGAAGATGGTTCTAATGCTTC
ATCAACGAACAAAAATCTTATGAAGGAGGACATGTATACGGAGATATTGGATGTGATGATGATGGACGAGGTATGATGCC
TTATGCGATAAGTATTGTCCTACTGGAAGTAGCATGTGCATCTTTTAAATAGCTATATATTGAGGAAAACCATGTGTGAT
TTAACGCCTCTCAGGAAGCCCGCGGTCGATAGCGAGGCGATTTGACGCCATCGATGATGTCA----GAGTACTCCTCTGG
TGCCGGCTGCTGGCTGCGGTTGTCACGTTCAAGTCTACTTT-TATCTAGCGGTGT--TTTTCTTATCCAACGGTGGTTGA
CTCGTTGACAATATAA-TACG------TCGCGTGTATCAGCTGATT----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------ATATATTGTCAGTAGATTA----GGCTGCTAATGATCGGAAGCAGTGGTATGATGCC
ATCGATGACGCTCCGCGTACACTCCACCACTAC--------------------------------TAGTGCA--------
---GTGCAGATACTCTTCTTAATTTGTGCTAATCAAATACTCGCATA---ACCAACGTCTGACGTTCACGATGACCTGGC
TGAGACCAATCAGTCATCTATTTATTCCGTCTCCTCC---AGGACAAGACAGGACATCAAGCAC-----CTGAGCTCCAC
ATCGATCAGTACCCAC-----GGCCACTCCACTCTCAGCTCAGGGACTCGGTGTCAGGGCGACCCAAGACAGAAGAATCG
GATCCAGAAGAATCATGGATTCCCTGACGGCGTCGACGACGGCGAAGCCCACCCTCCGAGTGGCCGCATTCTGCGGCTCC
CTCCGCAAGGACTCGTGGCACCGCGGCCTCATCCGCGCCGGTACGCACAATTCATCACCAATCACCATG-----GTTGCC
TAGCTCGC----TTGCTAATTATGCACCGCTGAGT--------------------------------TGA----TCG---
-------------------------------------------ATGTAGCGGAGGAGCTTTGCGAGGAGTCCATCCCGGG
GCTGCGCATCGACCACGTGGACATCTCCGGCCTGCCCATGGTCAACCCGGACCTGGAGACCGACGGCGGCAAGGGCTTCC
CGCCGGCCGTGGAGGCGCTCCGCGACAGCGTCCGCGCCGCAGACTGCTTCCTCTTCGCCTCGCCCGAGTACAACTACTCG
GTCACAGCGTCCCTGAAGAACGCGCTGGACTGGGCGTCGAGGGGCAAGCGCAACTGCTGGGCGGACAGGGCGGCGGCGAT
CGTGTGCGCGGGGGGCGACTTCGGCGGGGCCAGGGCGTCGCTCCACCTCCGCCAGATCGGGGTGTTCCTCGACCTCCACT
TCATCAACAAGCCGGAGCTCCACGTGAGGGCGTTTGCGGAGCCGCCCAAGTTCGACGAGGAGGGGAACCTCATCGACGCC
GAGACCAGGGAGCGGCTCAGGAAGGTGCTCCTCTCGCTCCAGGCCTTCGCGCTCAGGCTCCAGCACAACATGGAC-----
--G----ACTGACTGACTCAAGATCGATCGATGATAC----------CTGGCTCTGTGTACCGTGCGCGCTGGTTAATTT
GCATTGCCCTTCAGTTTGACGACG--TTGTGCTCTATGCACTAGTATTCGTGGTTCCGTGA----------GAAGTCTGT
GCTACCTTTGTGTAATAAAGCGCCGAAGCGTGCAAAAAAAAAAGTAATAAATCGCCGAAGAATTGCACTGTAAAAAAAAG
AACGTGTGCGTGC-------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------GTATGTGTTTTACCGATGCTACTAGTAGAACGCAAGGGCGCATCG
GCTACGTTGAGAAAACAATAGAACTGTTGAAGAAATTGATATTGTCGAAACATATGATGTTTTTAGGTG--TTTTTTTTT
TGTTCTTTT-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------AGAGTTTGT
ATGATTGTATCCTGTTTAGAAAGGCGAGGCGGCGGCAACGACTTTTAGAAAATGGAATAAGATTCTCCTCACGTGACTCC
CGTCTCAGTGCTGCGTAGGCGGATCCCGCTGAATTCGGTCGGCATTTGCCTTCGGTGGATCTACTTGGATAAAGTCTTCA
TCTGTGTGTGTTCGTGTGTCTATAGATTGGATCCTTTCGATTTAAGCTTCTCTTCATCGGCGAGGTTGCTATTCTGATGC
ACTAGTCATGTGTGGTCTTAGCATGAAAACTTTCTGATTGGCTACTATG----ACAAGGTCTGTCCATCTCCTGTAAGGG
ATGGACGATGACAGCGGTGCGCCTTTGGCTCATTCCATTGCTCGTAATCGTCGCTAGA-GGTGTACAGACCTGGTTGCTA
TTTTGGTTATTTCTAATGAGCTGCCATGTCTATTGATGAATAGGTCGGAACTTTTACCGAAAAGAAACTTTCGATTAAAT
AGTTCATAGTACA--ATCTTGATATAAAAGTGGAAACAAGACAAACAAATAACAACTACGACAAGGCAACTTAG--CATG
GTGGACGGTAAACAAGAAATTCAAATTTTTGTGCTAAAAGGAATTGCCAATTGTCTTTTTATAGAGTGAGTGGTTAAAAT
GACCTGACA
>chr3A_510
TAT-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------CGAGGCGATTTGACGCCATCGATGATGTC----TGAGTACTCCTCTGG
TGCAGGCTGCTG-CTGTGGATGTCACGTTCAAGTGTACTTTATATCTAGCGGTG--------------------------
---GTTGACAATATAA-TACT------TTCTCCATTTTAAAATATAGTGCGTCCGCGCTTTCTGAGATCCAACTTTGACT
ATAAATTTAACCAACAAGATCAACTGCGGCGGAAGAAAAAATTATATAATTAAAACTTCTTTCGAATACGAATTCACTGA
TATAATTTTTGCTTCCACCGCAATCGGTCTTGGTAGTTAAATTTACGGTCAAAGTTGAAGCACAGGGACAAAGAAAGCAC
TACATTGTGAAATGGAGGGAGTAGTATATTGTCAGTAGATTATTTAGGCTGCTAATGATCGCAA------GTATGATGCC
ATCGATGACGCTCC-----------ACCACTAG--------------------------------TAGTGCA--------
---GTGCAGATACTCTTCTTAATTTGGGTTAGTAAAATT------TAT---CCAACGTCTGACGTTCACGATGACCTGGC
TGAGACCAACGAGTCATCTATTTATTCCGTCTCCTCC---GGGACAAGACA-----TCAAGCACCTGAGCTGAGCTCCAC
ATCGATCAGTACTCAA-----AGCTACTCCACTCTCGGCCGAGGGACTCAGTGTCACGGCGACCCAGGACCGAGGAA---
---------GAATCATGGATTCCGTGACGGTGTCGACGGCGGCGAAGCCCACCCTCCGCGTGGCGGCCTTCTGCGGCTCC
CTCCGCAAGGACTCGTGGCACCGCGGCCTCATCCGCGCCGGTACGCACAATCCATCACCAATCACCATTATATAGTTGCT
TAGCTCCC----TTGGTTATTTTGCACTGCTGAGTGC--------------AACTGAATTTGCATGACC-----------
------------------------------------------TATCTAGCCGAGGAGCTGTGCGAGGAGTCCATCCCGGG
GCTGCGCATCGACCACGTGGACATCTCCGGCCTGCCCATGGCCAACCCGGACCTGGAGACCGACGGCGGCGAGGGCTTCC
CGCCGGCCGTCGAGGCGCTCCGCGACAGGGTCCGCGCCGCCGACTGCTTCCTCTTCGCCTCACCCGAGTACAACTACTCG
GTCACGGCGTCCCTCAAGAACGCGCTGGACTGGGCGTCCAGGGGCAA---CAACTGCTGGGCGGACAGGGCGGCGGCGAT
CGTGTGCGCGGGGGGCGACTTCGGCGGGGCCAGGGCGTCGCTCCACCTCCGCCAGGTCGGGATCTTCCTCGACCTCCACT
TCATCAACAAGCCGGAGCTCCACATCAGAGCGTTCGCGGAGCCGCCCAAGTTCGACGGCGAGGGCAACCTCATCGACGCC
GTGACCAGGGAGCGGCTCAAGAAGGTGCTCCTCTCGCTCCAGGCCTTCGCGCTCAGGCTCCAGCACAACAACAAGGACGA
CTG----ACTGACTCAA--------GATCGGTGATGC----------TTGGCAGTTGGCACCGTGTACCGT-----ATGT
GCATTTCCCTAAAGTTTGATGACG--TTCTGCTCCGTGCACCAGTATTCGTGGTTCCGTGAAACACTGTAGGAAGTGTGT
GCTACCTTTTGT-------------------------------GTAATAAATCGCCGAAGAATTGCATCGTACTGTT--G
AACGTGTGCGTGC-------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------GTATGTGTTTTACCGTTGCTACTAG---AACGCGAGGGCGCAT-G
TCTATGTTGAGAAAACAATAG-------GAAGAAATTGATATTGTCGGAACATATGATGTTTTTATGTGGTTTTTTTTGT
CCG---TTAACGGCCTCCTTTGGTTCATAGGATTGAAAAATCATAGGAATATGAAAGTCATAGGAAATGAGATGACATGC
ATCTCAAATCCTATGCATAGGAATAGAAAAAGAGATGCCCTTTGATTCACACCATAGGATTTTTTCCATTGAGTCTAGGC
TAATGTTTATTTTCCTATGAAATATGGAGGATAGGAAGAATTCCTCCATAGGAATAGGATTTCATTCCTACAAATCAAAG
AGCTCTGAAGGAATTTTTCCTATAGAAATCCTATCCTATGAAAATCCTACAAAATTCCTCCAAACCAAAGGAGAGTTTGT
GTGATTGTATCCTGTTTAGAAAGGCGAGGCGGCGGCAACGACTTTTTGAAGATGGAATAAGGTTCTCCTCACATAGCTCT
CGTACCAATGGTGCGTCGGCGGATCCTGCTGGATTCGGTCGGCGTTTGTCTTCGGTGGATCTACTTGGATCCGGTCTACA
TCTGTCTGTGTTCGTGCGTCTATAGGCTGGATTCTTTCGATCTAAGTTTCTCTTCATCGGCGAGGTTGCTATTCTGCTGC
ACTAGTTATGTGTGGTCTTAGCATGAACACTTTCTGATTGTCTACTTACTATAACAAGGCTTGTCCATCTCCGGTAAGGG
AGGGACAATGACGATAGTGCGCCTTCGGCTCGTTCCATTGCTCGTAACCGTCGCTAGATGGCGTACAGGCCTGGTTGCAA
TTGTTGTTACTTCTAATGTACTGCCATGTCTATTGATGAGTAGGTCGGAACTTTTCCCGGAAAGAAACTTTGGCTTAAAT
AGTTTATAGTACAATATCTTGATATAAAAGTGGAAACAAGACAAACAAATAATAACTACGGCAAGGCAACTTAGTGCATG
GTGGACG-TAAACAAGAAATCTAAA-TTTTGTGCTAAAAGGAATTGTCAAT-----------------------------
---------
>chr3D_516
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------GGCGATTTGACGCCATCGATGATGTCAGAGTGAGTACTCCTCTGG
TGCCGGCTGCTGGCTGTGGCTGTCACGTTCAAGTCTACTTT-TATCTAGCGGTGGTATTTTTTTATCCAGCGGTGGTTGA
CTCATTGACAATATAA-TACTCCTATGTCGCGCGTATCAGCTGATT----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------ATATATTGTCAGTAGATTA----GGCTGCTAATGATCGGAC------GTATGATGCC
ATCGATGACGCTCCGCGTACAATCCACCACTCCT----------------------------------------------
----------TACTCTTCTTCCTCTGTGCTAATCAAATACTCGCATAACCACCAACGTATGACGTTCACAATGACCTGGC
TGAGACCATTTAGTCATCTATTTATTCCGTCTCCTCA---GGGACAAGACA-----TCAAGCACCTGAGCTGACCTCCAC
ATCGATCAGTACTCAA-----AGCCACTCCACTCTCAGCCGAGGGACTGAGTGTCACGGCGACCCAAGACCGAAGAA---
---------AAATCATGGGGTCCGTGACGGCGTCGACGACGGCGCAGCCCACCCTCCGCGTGGCCGCCTTCTGCGGCTCC
CTCCGCAAGGACTCGTGGCACCGCGGCCTCATCCGCGCCGGTACGCACTACTATTCACCAATCCCCATG-----GTTGCC
TAGCTCGCGTCATTGGTAATTTTGCACCACTAACTAC--------------GCCTTACTTTGCATAATGA----TCG---
-------------------------------------------ATGTAGCCGAGGAGCTGTGCGAGGAGTCCATCCCGGG
GCTGCGCATCGACCACGTGGACATCTCCGGCCTGCCCATGGTCAACCCGGACCTGGAGACCGACGGCGGCGAGGGCTTCC
CGCCGCCCGTCGAGGCGCTCCGCGAGAGGGTCCGCGCCGCCGACTGCTTCCTCTTCGCCTCGCCCGAGTACAACTACTCG
GTCACGGCGTCCCTGAAGAACGCGCTGGACTGGGCGTCGAGGGGCAAGCGCAACTGCTGGGCGGACAGGGCGGCGGCGAT
CGTGTGCGCGGGGGGCGACTTCGGCGGGGCCAGGGCGTCGCTCCACCTCCGCCAGATCGGGGTGTTCCTCGACCTCCACT
TCATCAACAAGCCGGAGCTCCACATCCGTGCGTTCGCGGAGCCGCCCAAGTTCGACGAGGAGGGCAACCTCATCGATGCC
GTGACCAGGGAGCGGCTCAAGAAGGTGCTCCTCTCGCTCCAGGCCCTCGCGCTCAGGCTGCAGCACAACAAGGAC-----
--G----ACTGACTCAA--------GATCCATGATAC----------TTGCCACCGTGTACT------CGT-----ACGT
CCATTTCCCTAAAGTTTGACGACGTTTTCTGCTCCGTGCACTAGTATTCGTGGTTCCGTGAAATACTGTAGGAAGTGTGT
CCTACC-TTTGT-------------------------------GTAATAAATCGCTGAAGAATTCGACTGTACTGTT--G
AACGTGTGCGTGCGTACGTGTTTGGGTCTGTTTAAGACACATCTAGATGTGACATAATATGTCACATCTAACCTTGTGTC
CACTAGGTTTGTGATTTTTTTTGTCTCAACTTTTTTTGTTCCTTATTGCTGCATTATTTGTAGGAGCTTAGATGTGCCAT
TCTTAGAAAATATCTAAATGTGAATTAGACAAACGGTATGTGTTTTACCGTTGCTACTAG---AACGCGAGGGCGCATCG
TCTATGTTCAGATAACAGTAGAACTGTTGAAGAAATTGATATTGTCGAAACATGTGATGTTTTAAGGTG--TTTTTTTGT
CCG---TTT-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------AGAGTTTGT
GTGATTGTATCTTGTTTAGAAAGGCGAGGCAGCGGCAACGACTTTTTGAAGATGAAATACGGTTCTCCTCACGTAGCTCA
CGTCCTAGTGGTGCGTCGGCGGATCCCGTTGGATTCGATCGGCATTTGCCTTCGGTGGATCTACTTGGAGA---TCTTCA
TCTGTCTGTGTTCGTGCGTCTATAGATTGGATCATTTCAATTTAAGCTTCTCTTCATCGGCGAGGTTGCTATTCTAGTGC
ACTAGTCTTGTGTGGTCTTAGCATGAAAACTTTCTGATTGGCTACTATG----ACAAGGTCTGTCCATCTCCTTTAAGGG
ATGGACGATAACGGCGGTGCACCTTCGGCTCGTTCCATTGCTCGTAATCGTCGCTAGA-GGTGTACAGACCTGGTTGCTA
TTTTGGTTATTTCTAATGAGCTGCCATGTCTATTGATGAATAGGTCGGAACTTTTACCGAAAAGAAACTTTCGATTAAAT
AGTTCATAGTACA--ATCTTGATATAAAAGTGGAAACAAGACAAACAAATAACAACTACGACAAGGCTACTTAGTGCATG
GTGGACGGTAAACAAGGAATTCAATTTTTTGTGCTAAAAGGAATTGCCAATTGTCTTTT-ATAGAGTGAGTGGTTAAAAT
GACCTGACA
>chr3D_616
TTATCTAGC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------GTGGTTGA
CTCGTTGGCAATATAAGTATT------TCGCACGTGTCAGCTGATT----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------GTATATTGTCAGTAGATTA----GGCAGCTAATAATCGGAA------GTATGATACC
ATCGATGACGCTCCGCGTACACTTCTACTACCAACAGACCAACTAGTCGTATATTGTCAGTAGATTAGTGCA--------
---GTGCAGATATTG----------------------------------------CGTCTGACGTTCACGATGACCTGGC
TGAGACCAACTAGTCGTCTATTTATTCCGTCTCCTCC---AGGACAAGGCAGGACATCAAGCAC-----CTGAGCTCCAC
ATCGATCAGTACCCACAGGACAGCCACTCCACTCTCAGCTCAGGGACTCGGTGTCAGGGCGACCCAAGACA---GAA---
---------GAATCATGGATTCCGTGACGGCGTCGACGACGGCGAAGCCCACCCTCCGAGTGGCCGCCTTCGGCGGCTCC
CTCCGCAAGGACTCGTGGCACCGTGGCCTCATCCGCGCCGGTACGCACCATTA---ACCAATCACCATG-----GTTGCC
TAGCTCGC----TTGCTAATTATGCACCGCTGAGTGCTGACTGCTGAGTGCGCCTTACTTTGCATGATGA----TCG---
-------------------------------------------ACGTAGCCGAGGAGCTGTGTGAGGAGTGCATCCCGGG
GCTGCGGATCGACCACGTGGACATCTCCGGCCTGCCCATGGTCAACCCGGACCTGGTGACCGACGGCGGCGAGGGCTTCC
CGCCGGCCGTCGAGGCGCTCCGCGACAGGGTCCACGCCGCCGACTGCTTCCTGTTCGCCTCGCCCGAGTACAACTACTCG
GTCACCGCCTCCCTCAAGAACGCGCTGGACTGGGCGTCCATGGGCGAGCACAACTGCTGGGCTGACAGGGCGGCGGCGAT
TGTTTGCGCGGGGGGCGACTTCGGCGGGGGCAGGGCGTCGTTCCACCTCCGCCAGATCGGGGTCTTCCTGGACCTTCATT
TCATCAACAAGCCTGAGCTCCACGTGAGGGCGTTCGCGGACCCGCCCAAGTTCGACGAGGAGGGCAACCTCATCGACGTC
GAGACCAGGGAGCGGCTCAAGAAAGTGCTCCTATCGCTCCAGGCCTTCGCGCTCAGGCTCCAGCCCAA---GGAC-----
--G----ACTAACTGAA--------GATCCATGATAC----------TTGGCACCGTGTACCGTACGTGCTGGTTAATTT
GCATTTTCCTTCGGTTTGACGATG--TTCTGCTCCGTCCACTGGTATTCATGGTTTCGTGA-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------
>chr3B_625
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------GGTGGTTGA
CTCGTTGGCAATATAA-TATT------TCGCGCGTATCAGCTAACT----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------ATATATTGTCAGTAGGTTA----GGCAGCTAATGATGAGAA------ATATGATGCC
ATCGATGACGCTCCGCGTACACTCCACCACTAC--------------------------------TAGGGTCAGGGACTC
GGTGTGGAGATACTCTTCTTAATTTGTGTAAATAAAATA------TA---ACCAACATCTGACGTTCACGATGACCTGGA
TAAGACCAACGAGTCATCTATTTATTGCGTCTCCTCCTCAAGGACAAGACAGGACATCAAGCAC-----CTGAGCTCCAC
ATCGATCAGTACCC-----ACAGCCACTCCACTCTCAGCTCAGGGACTCGGTGTCAGGGCGACCCAAGACAGAAGAA---
------------TCATGGGATCCGTGACGGCGTCGACGATGGCACAGCCCACCCTCCGCGTGGCCGCCTTCTGCGGCTCC
CTCCGCAAGGACTCATGGCACCGCGGCCTCATCCGCGCCGGTACGCACCATTCCTCACCAATCACCATG-----GTTGCT
TAGCTCGC----TTTGTGATCTTGCACCGCTGACT--------------------------------TGCCTTGTTGATA
CTTTGCATGACGATCGATG-----------------------TATGTAGCCGAGGAGCTGTGCGAGGAGTCCATCCCGGG
GCTGCGCATCGACCACGTGGACATCTCCGGCCTGCCCATGGTCAACCCGGACCTGGAGACCGACGGCGGCGAGGGCTTCC
CGCCGGCCGTCGAGGCGCTCCGCGAGAGGGTCCGCGCCGCCGACTGCTTCCTCTTCGCCTCGCCCGAGTACAACTACTCG
GTCACCGCCTCCCTGAAGAACGCGCTGGACTGGGCGTCCAGGGGCAAGCGCAACTGCTGGGCGGACAGGGCGGCGGCGAT
CGTGTGCGCGGGGGGCGACTTCGGCGGGGCCAGGGCGTCGCTCCACCTCCGCCAGATCGGGGTGTTCCTCGACCTCCACT
TCATCAACAAGCCGGAGCTCCACATCAGGGCGTTCGCGGACCCGCCCAAGTTCGACGAGGAGGGCAACCTCATCGACGCC
GTGACCAGGGAGCGGCTCAAGAAGGTTCTCCTCTCGCTCCAGGCCTTCGCGCTCAGGCTCAAACACAA---GGAC-----
--GAGTGACTGACTCAA--------GATCAACGATACTACTTGGCAGTTGGCACCGTATACCGTACCTGCTGGTTAATTT
GCATTGCATTTTCC------------TTCAGCTCCGTGCACTAGTATTCGTGGTTCCGTGA-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------
>chr3D_1026
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------CGGCGAAGCCCACCCTCCGCGTGGCCGCTCTCAGCGGCTCC
CTCCGCAGCAACTCGTGGCACCACGGCCTCATCCGCGCCGGTACGTACGCAC----------------------------
--------------------------------------------------------ACATTTCACGCTGA----TTTAAT
C--TGCATGCACTGC-----TGACCGCGCCTTCCATGCGTGCTATGTAGCCGAGGAGCTGTGCGAGGAGTGCATCCCGGG
GCTGCGCATCGACCACGTGGACATCTCCGGCCTGCCCATGGCCAACCCGGACCTGGAGACCGACGGCGGCGACGGCTTCC
CGCCGGCCGTGGAGGCCTTCCGCGACAGGGTCAGCGCCGCCGACTGCTTCCTCTTCGCCTCGCCCGAGTACAACTACTCC
GTCACCGGCTCGCTGAAGAACGCGCTGGACTGGGCGTCCAGGGGCACGCACAAATGCTGGGCCGACAAGGCGGCGGCGAT
CGTCTGCGCGGGAGGCGACTTCGGCGGGGGCAGGGCGTCGCTCCACCTGCGCGAGATCGGGATATACCTAGACCTGCACT
TCATCAACAAGCCGGAGCTCCACATCAGGGCGTACGAGGACCCGCCCAAGTTCGACGGCGAGGGGAACCTCATCGACGCC
AAAGCCAGGGAGCGGCTCAAGAAGGTGCTCCTCTCGCTGCAGGTCTTCGCGCTCAGGCTGCA------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------
>chr3B_1026
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------CGGCGAAGCCCACCCTCCGCGTGGCCGCTCTCAGCGGCTCC
CTCCGCAACAACTCGTGGCACCACGGCCTCATCCGTGCCGGTACGTACGCAT----------------------------
--------------------------------------------------------ACATTTTACATGGA----TTTATA
CTTTGCATGCACTGCTGTGCTGACTGCACCTTGCATG-------CGTAGCCGAGGAGCTGTGCGAGGAGTGCATGCCTGG
GCTGCGCATCGACCACGTCGACATCTCCGGCCTGCCCATGGCCAACCCGGACCTGGAGACCGACGGCGGCAACGGCTTCC
CGCAGGCCGTCGAGGCCTTCCGCGACAGGATCAGCGCCGCCGACTGCTTCCTCTTTGCCTCGCCCGAGTACAACTACTCC
GTCACCGGCTCGCTCAAGAACGCGCTGGACTGGGCGTCCAGAGGCACGCACAAGTGCTGGGCGGACAAGGCGGCGGCGAT
CGTCTGCGCGGGGGGCGACTTCGGCGGGGGCAGGGCGTCGCTCCACCTGCGCGAGATCGGGATATACCTGGACCTGCACT
TCATCAACAAGCCGGAGCTCCACATCAGGGCGTACGAGGACCCGCCCAAGTTCGACGGCGAGGGGAACCTCATCGACGCC
CAAGCCAGGGAGCGGCTCAAGAAGGTGCTCCTCTCGCTGCAGGCCTTCACGCTCAGGCTGCAACGCAC---GGAG-----
--A----ATTGACTCAA--------GATCGA-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------
>chr3A_1183
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------AGCCGAGGAGCTGTGCGAGGAGTGCATTCCAGG
GCTGCGCATCGACCACGTCGACATCTCCGGCCTGCCCATGGCCAACCCGGACCTCGAGACCGACGGTGGCGACGGTTTCC
CGCCGGCCGTGGAGGCGTTCCGCGACAGGGTCAGCGCCGCGGACTGCTTCCTCTTCGCCTCGCCCGAGTACAACTACTCC
GTCACCGGCTCGCTCAAGAACGCGCTGGACTGGGCATCGAGGGGCACACACAAATGCTGGGCTGACAAGGCAGCGGCGAT
CATCTGCGCGGGGGGCGACTTCGGCGGGGGCAGGGCGTCGCTCCACTTGCGCGAGATCGGGATATACCTGGACCTGCACT
TCATCAACAAGCCGGAGCTCCACATCAGGGCGTACGAGGACCCGCCCAAGTTCGACGACAAGGGGAACCTCATCGACGCC
CAAGCCAAGGACCGGCTCAGGAAGGTGCTCCTCTCGCTGCAGGCATTCGCGCTCAGGCTCCAACGCAA------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------
>chr3D_1184
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------GCCGAGGAGCTGTGCGAGGAGTCCATCCCGGA
GCTGCAAATCGACCACGTCGACATCTCCGGCCTGCCCATGTCCAACCCGGACCTGGAGACGGACGACGGCGACGGCTTCC
CGCCGGACGTCGAGGCGTTCCGGGACAGGGTCCGCGCCGCCGACTGCTTTCTCTTCGCCTCGCCCGAGTACAACTACTCC
GTGACCGCCACGCTGAAGAACGCGCTGGACTGGGCGTCGAGGGGCACGCACAAGTGCTGGGCGGACAAGGCCGCGGCCAT
CGTCTCCGCGGGCGGCAGCTGCGGCGGGGGCAGGGCGGCGTTCCACCTCCGCCAGATCGGGGTGTTCCTGGACATCCACT
TCATCAACAAGCCGGAGCTCCAGGTCAGGGCGTACGAGGACCCGCCCAAGTTTGACGCCGACGGGAACCTCGTCGACGCC
GAGACGAGGGAGCGGCTCAAGCAGGTGCTCCTCTCGCTGCAGGCCTTCGCGCTCCGGCTCCAGCACTAAC----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------
>SNPs
S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------------------
----------------S--S----------------------------------S------S-------S----------
--------------------S-----------S-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------SSSSSS----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------S---------------------------------------------------------------------
---------------------S-------------------------------------------------------SSS
SSSSSSSSS--------------S-------------------------------------------S------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------S--------S--------------------
--------------------------------------------------------------------------------
----------------------------S-----------S---------------------------------------
-----S--------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------S---------------------------------------------
----------------------------------------------------------------------S---------
----------------SSSSSSSSS----------------------S----S---------------------------
----------------------------S-----SS----------------------------------------S---
---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------SSSSSSS-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------S---------SSS-----S-----------
S---S-------------------------------------------------------------------------S-
SSSSSS--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
S---------------------------------------------S---S----------S------------SS---S
----S-----S-----S--------------S---------------------------------------SS-------
-----S----------S-----------------------------------------------------------S---
--------------------------------------------------------------------------------
------------S------------S-----S------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------S--------------------
---------
>forward_137
--------------------------------------------------------------------------------
-------------------------------------GGCATTCGGGTGGTTCCTAA-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------
>reverse_1721
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------AGACTGCTTCCTCTTCGCCT--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------
>forward_500
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
TTAACGCCTCTCAGGAAGCC------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------
>reverse_3306
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------TGGCTCATTCCATTGCTCGT-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------
