Multiple sequence alignment - TraesCS3D01G095700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G095700 chr3D 100.000 2637 0 0 1 2637 48542231 48544867 0.000000e+00 4870.0
1 TraesCS3D01G095700 chr3D 94.433 2353 80 18 4 2356 48733562 48731261 0.000000e+00 3572.0
2 TraesCS3D01G095700 chr3D 82.759 145 17 6 72 213 48542268 48542407 3.560000e-24 122.0
3 TraesCS3D01G095700 chr3D 82.759 145 17 6 38 177 48542302 48542443 3.560000e-24 122.0
4 TraesCS3D01G095700 chr3D 81.818 121 16 6 61 179 591120054 591120170 2.160000e-16 97.1
5 TraesCS3D01G095700 chr3B 90.510 2529 181 31 3 2521 77314349 77316828 0.000000e+00 3286.0
6 TraesCS3D01G095700 chr3B 89.032 1632 132 17 200 1828 77349133 77350720 0.000000e+00 1978.0
7 TraesCS3D01G095700 chr3B 92.830 795 56 1 702 1495 77413602 77414396 0.000000e+00 1151.0
8 TraesCS3D01G095700 chr3B 90.276 689 52 1 1830 2518 77418462 77419135 0.000000e+00 887.0
9 TraesCS3D01G095700 chr3B 90.286 350 26 4 1484 1833 77416727 77417068 4.000000e-123 451.0
10 TraesCS3D01G095700 chr3B 87.797 295 23 6 262 553 77413269 77413553 1.510000e-87 333.0
11 TraesCS3D01G095700 chr3B 83.784 111 13 5 70 179 792345025 792345131 1.670000e-17 100.0
12 TraesCS3D01G095700 chr3B 83.784 111 13 5 70 179 792435346 792435452 1.670000e-17 100.0
13 TraesCS3D01G095700 chr3A 91.586 1450 104 10 269 1714 60841573 60843008 0.000000e+00 1986.0
14 TraesCS3D01G095700 chr3A 87.786 393 46 2 2131 2523 58995039 58994649 2.390000e-125 459.0
15 TraesCS3D01G095700 chr2D 88.550 393 44 1 2131 2523 529607434 529607043 2.380000e-130 475.0
16 TraesCS3D01G095700 chr2D 96.552 116 4 0 2522 2637 494190536 494190651 2.680000e-45 193.0
17 TraesCS3D01G095700 chr2B 87.532 393 44 3 2131 2523 629491925 629491538 1.440000e-122 449.0
18 TraesCS3D01G095700 chr7D 87.212 391 50 0 2131 2521 30295849 30296239 1.860000e-121 446.0
19 TraesCS3D01G095700 chr7D 95.763 118 4 1 2520 2637 538630777 538630893 3.460000e-44 189.0
20 TraesCS3D01G095700 chr7D 82.645 121 11 7 27 143 31437490 31437604 6.010000e-17 99.0
21 TraesCS3D01G095700 chr6D 87.212 391 49 1 2131 2521 55409171 55408782 6.700000e-121 444.0
22 TraesCS3D01G095700 chr6D 74.103 1143 202 43 465 1575 51829 52909 4.120000e-103 385.0
23 TraesCS3D01G095700 chrUn 86.957 391 51 0 2131 2521 108365036 108365426 8.660000e-120 440.0
24 TraesCS3D01G095700 chrUn 83.784 111 13 5 70 179 155032333 155032227 1.670000e-17 100.0
25 TraesCS3D01G095700 chrUn 83.784 111 13 5 70 179 352277593 352277699 1.670000e-17 100.0
26 TraesCS3D01G095700 chr6B 74.185 736 124 38 777 1498 5282668 5283351 2.030000e-61 246.0
27 TraesCS3D01G095700 chr6A 96.522 115 4 0 2523 2637 218864697 218864583 9.630000e-45 191.0
28 TraesCS3D01G095700 chr5D 96.522 115 4 0 2523 2637 359511247 359511361 9.630000e-45 191.0
29 TraesCS3D01G095700 chr5D 96.522 115 4 0 2523 2637 430263525 430263411 9.630000e-45 191.0
30 TraesCS3D01G095700 chr1D 96.522 115 4 0 2523 2637 56940000 56940114 9.630000e-45 191.0
31 TraesCS3D01G095700 chr1D 95.763 118 5 0 2520 2637 61588711 61588594 9.630000e-45 191.0
32 TraesCS3D01G095700 chr1D 80.172 116 20 3 99 213 471948959 471948846 1.680000e-12 84.2
33 TraesCS3D01G095700 chr4A 94.355 124 5 2 2514 2637 306159304 306159425 3.460000e-44 189.0
34 TraesCS3D01G095700 chr7A 94.262 122 6 1 2516 2637 345669071 345668951 4.480000e-43 185.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G095700 chr3D 48542231 48544867 2636 False 1704.666667 4870 88.50600 1 2637 3 chr3D.!!$F2 2636
1 TraesCS3D01G095700 chr3D 48731261 48733562 2301 True 3572.000000 3572 94.43300 4 2356 1 chr3D.!!$R1 2352
2 TraesCS3D01G095700 chr3B 77314349 77316828 2479 False 3286.000000 3286 90.51000 3 2521 1 chr3B.!!$F1 2518
3 TraesCS3D01G095700 chr3B 77349133 77350720 1587 False 1978.000000 1978 89.03200 200 1828 1 chr3B.!!$F2 1628
4 TraesCS3D01G095700 chr3B 77413269 77419135 5866 False 705.500000 1151 90.29725 262 2518 4 chr3B.!!$F5 2256
5 TraesCS3D01G095700 chr3A 60841573 60843008 1435 False 1986.000000 1986 91.58600 269 1714 1 chr3A.!!$F1 1445
6 TraesCS3D01G095700 chr6D 51829 52909 1080 False 385.000000 385 74.10300 465 1575 1 chr6D.!!$F1 1110
7 TraesCS3D01G095700 chr6B 5282668 5283351 683 False 246.000000 246 74.18500 777 1498 1 chr6B.!!$F1 721

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
633 676 1.014352 ACGACACTGTTGGAAGTTGC 58.986 50.0 1.37 0.0 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2462 6284 0.108138 CGAGCCTAGGTGAAAGGGTG 60.108 60.0 11.31 0.0 44.72 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 9.083080 TGTTGTATATGAAGTCTCGTTACATTG 57.917 33.333 0.00 0.00 0.00 2.82
76 77 7.925993 TGAAGTCTCGTTACATTGAAAATTGT 58.074 30.769 0.00 0.00 0.00 2.71
77 78 7.855409 TGAAGTCTCGTTACATTGAAAATTGTG 59.145 33.333 0.00 0.00 0.00 3.33
85 86 8.646356 CGTTACATTGAAAATTGTGTTGCATAT 58.354 29.630 0.00 0.00 0.00 1.78
93 94 8.710551 TGAAAATTGTGTTGCATATGAAATCAC 58.289 29.630 6.97 13.21 0.00 3.06
313 339 4.598062 GGTAGTGAACTTTGTCTTGTTGC 58.402 43.478 0.00 0.00 0.00 4.17
338 364 7.410407 GCATATTTGGACTGCGTCTTTTTAAAC 60.410 37.037 8.26 0.00 32.47 2.01
420 449 5.575995 GCATTCTCTTCTTTTCCAATCTTGC 59.424 40.000 0.00 0.00 0.00 4.01
478 511 6.041296 GCACTCCCATTTAATGATTTCCTCAT 59.959 38.462 6.50 0.00 46.87 2.90
537 578 4.829064 TTGCTAGTTTTCTTTGCGTGAT 57.171 36.364 0.00 0.00 33.31 3.06
547 588 9.817809 AGTTTTCTTTGCGTGATCTAATATAGA 57.182 29.630 0.00 0.00 39.50 1.98
633 676 1.014352 ACGACACTGTTGGAAGTTGC 58.986 50.000 1.37 0.00 0.00 4.17
728 776 2.093128 ACAGCTAGGGTTTTATGTCCGG 60.093 50.000 0.00 0.00 0.00 5.14
774 831 7.301420 TCCCTTGCCATATATATGAACCAAAA 58.699 34.615 21.97 7.56 35.75 2.44
1042 1110 9.853555 GAGATCAAGAGTGTAGTTATCCATATG 57.146 37.037 0.00 0.00 0.00 1.78
1231 1305 3.984732 GGGCAGGCCTTCCAGGTT 61.985 66.667 23.74 0.00 37.80 3.50
1751 4170 4.323553 AGAATAAGTAGACGCATCCCAC 57.676 45.455 0.00 0.00 0.00 4.61
2124 5946 7.063074 CGTTTATCCTTTCTCGTGTTCACTAAT 59.937 37.037 1.53 0.00 0.00 1.73
2187 6009 2.347731 CTCAAACCTAGCCCGACTTTC 58.652 52.381 0.00 0.00 0.00 2.62
2313 6135 0.751643 AAGGCAACAACAGGAACGCT 60.752 50.000 0.00 0.00 41.41 5.07
2412 6234 1.211969 GCACCAGCTGCATCAACAG 59.788 57.895 8.66 0.00 46.29 3.16
2418 6240 1.080298 GCTGCATCAACAGGCCAAC 60.080 57.895 5.01 0.00 38.16 3.77
2447 6269 2.210013 ACTTGAGCTGTCTCCGCCA 61.210 57.895 0.00 0.00 38.58 5.69
2462 6284 3.451894 CCATCGCAAAGGGCCACC 61.452 66.667 6.18 0.00 40.31 4.61
2495 6317 4.457496 CTCGATGGGTGCCGCACT 62.457 66.667 22.41 3.29 34.40 4.40
2529 6351 2.304221 TGGCTACCACAGACACTACT 57.696 50.000 0.00 0.00 37.37 2.57
2530 6352 3.444792 TGGCTACCACAGACACTACTA 57.555 47.619 0.00 0.00 37.37 1.82
2531 6353 3.770046 TGGCTACCACAGACACTACTAA 58.230 45.455 0.00 0.00 37.37 2.24
2532 6354 3.762288 TGGCTACCACAGACACTACTAAG 59.238 47.826 0.00 0.00 37.37 2.18
2533 6355 4.015084 GGCTACCACAGACACTACTAAGA 58.985 47.826 0.00 0.00 29.64 2.10
2534 6356 4.461781 GGCTACCACAGACACTACTAAGAA 59.538 45.833 0.00 0.00 29.64 2.52
2535 6357 5.047519 GGCTACCACAGACACTACTAAGAAA 60.048 44.000 0.00 0.00 29.64 2.52
2536 6358 6.453092 GCTACCACAGACACTACTAAGAAAA 58.547 40.000 0.00 0.00 0.00 2.29
2537 6359 6.586844 GCTACCACAGACACTACTAAGAAAAG 59.413 42.308 0.00 0.00 0.00 2.27
2538 6360 6.726490 ACCACAGACACTACTAAGAAAAGA 57.274 37.500 0.00 0.00 0.00 2.52
2539 6361 6.750148 ACCACAGACACTACTAAGAAAAGAG 58.250 40.000 0.00 0.00 0.00 2.85
2540 6362 5.635700 CCACAGACACTACTAAGAAAAGAGC 59.364 44.000 0.00 0.00 0.00 4.09
2541 6363 6.451393 CACAGACACTACTAAGAAAAGAGCT 58.549 40.000 0.00 0.00 0.00 4.09
2542 6364 7.309255 CCACAGACACTACTAAGAAAAGAGCTA 60.309 40.741 0.00 0.00 0.00 3.32
2543 6365 8.247562 CACAGACACTACTAAGAAAAGAGCTAT 58.752 37.037 0.00 0.00 0.00 2.97
2544 6366 9.463902 ACAGACACTACTAAGAAAAGAGCTATA 57.536 33.333 0.00 0.00 0.00 1.31
2545 6367 9.944663 CAGACACTACTAAGAAAAGAGCTATAG 57.055 37.037 0.00 0.00 0.00 1.31
2546 6368 8.626526 AGACACTACTAAGAAAAGAGCTATAGC 58.373 37.037 17.33 17.33 42.49 2.97
2565 6387 8.778358 GCTATAGCTAATATGGACATTAATGGC 58.222 37.037 17.75 16.57 38.21 4.40
2566 6388 7.792374 ATAGCTAATATGGACATTAATGGCG 57.208 36.000 19.37 3.29 36.40 5.69
2567 6389 4.396166 AGCTAATATGGACATTAATGGCGC 59.604 41.667 19.37 12.73 36.40 6.53
2568 6390 4.155826 GCTAATATGGACATTAATGGCGCA 59.844 41.667 19.37 15.84 36.40 6.09
2569 6391 4.503741 AATATGGACATTAATGGCGCAC 57.496 40.909 19.37 4.85 36.40 5.34
2570 6392 1.032014 ATGGACATTAATGGCGCACC 58.968 50.000 19.37 13.43 36.40 5.01
2579 6401 3.902318 TGGCGCACCATGTATGTG 58.098 55.556 10.83 3.91 42.67 3.21
2580 6402 1.748500 TGGCGCACCATGTATGTGG 60.749 57.895 10.83 0.00 42.67 4.17
2586 6408 3.110139 CCATGTATGTGGTGCGCC 58.890 61.111 10.11 10.11 34.46 6.53
2587 6409 1.748500 CCATGTATGTGGTGCGCCA 60.749 57.895 16.89 16.89 43.73 5.69
2595 6417 3.304251 TGGTGCGCCACTGCTATA 58.696 55.556 16.89 0.00 40.46 1.31
2596 6418 1.829456 TGGTGCGCCACTGCTATAT 59.171 52.632 16.89 0.00 40.46 0.86
2597 6419 1.044611 TGGTGCGCCACTGCTATATA 58.955 50.000 16.89 0.00 40.46 0.86
2598 6420 1.414550 TGGTGCGCCACTGCTATATAA 59.585 47.619 16.89 0.00 40.46 0.98
2599 6421 1.798813 GGTGCGCCACTGCTATATAAC 59.201 52.381 12.58 0.00 34.40 1.89
2600 6422 2.479837 GTGCGCCACTGCTATATAACA 58.520 47.619 4.18 0.00 35.36 2.41
2601 6423 2.476619 GTGCGCCACTGCTATATAACAG 59.523 50.000 4.18 10.91 39.86 3.16
2607 6429 2.755650 ACTGCTATATAACAGTGGCGC 58.244 47.619 16.23 0.00 45.19 6.53
2608 6430 2.102420 ACTGCTATATAACAGTGGCGCA 59.898 45.455 16.23 3.88 45.19 6.09
2609 6431 2.476619 CTGCTATATAACAGTGGCGCAC 59.523 50.000 10.83 5.73 34.10 5.34
2610 6432 1.798813 GCTATATAACAGTGGCGCACC 59.201 52.381 10.83 0.00 34.49 5.01
2611 6433 2.805295 GCTATATAACAGTGGCGCACCA 60.805 50.000 10.83 0.00 46.51 4.17
2619 6441 2.584064 TGGCGCACCAGATACAGG 59.416 61.111 10.83 0.00 42.67 4.00
2620 6442 2.290287 TGGCGCACCAGATACAGGT 61.290 57.895 10.83 0.00 42.67 4.00
2625 6447 2.584608 ACCAGATACAGGTGCGCC 59.415 61.111 8.71 8.71 38.13 6.53
2626 6448 2.290287 ACCAGATACAGGTGCGCCA 61.290 57.895 20.59 0.00 38.13 5.69
2627 6449 1.146930 CCAGATACAGGTGCGCCAT 59.853 57.895 20.59 8.81 37.19 4.40
2628 6450 0.464373 CCAGATACAGGTGCGCCATT 60.464 55.000 20.59 7.01 37.19 3.16
2629 6451 1.202639 CCAGATACAGGTGCGCCATTA 60.203 52.381 20.59 9.26 37.19 1.90
2630 6452 2.560504 CAGATACAGGTGCGCCATTAA 58.439 47.619 20.59 0.64 37.19 1.40
2631 6453 3.141398 CAGATACAGGTGCGCCATTAAT 58.859 45.455 20.59 6.11 37.19 1.40
2632 6454 3.058708 CAGATACAGGTGCGCCATTAATG 60.059 47.826 20.59 10.11 37.19 1.90
2633 6455 2.411628 TACAGGTGCGCCATTAATGT 57.588 45.000 20.59 15.76 37.19 2.71
2634 6456 1.094785 ACAGGTGCGCCATTAATGTC 58.905 50.000 20.59 0.05 37.19 3.06
2635 6457 0.381801 CAGGTGCGCCATTAATGTCC 59.618 55.000 20.59 8.26 37.19 4.02
2636 6458 0.255890 AGGTGCGCCATTAATGTCCT 59.744 50.000 20.59 10.08 37.19 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.691661 ATTTCGGTCATATTTTATAGTGGCTT 57.308 30.769 0.00 0.00 0.00 4.35
1 2 9.959721 ATATTTCGGTCATATTTTATAGTGGCT 57.040 29.630 0.00 0.00 0.00 4.75
55 56 7.565073 GCAACACAATTTTCAATGTAACGAGAC 60.565 37.037 0.00 0.00 0.00 3.36
68 69 8.710551 TGTGATTTCATATGCAACACAATTTTC 58.289 29.630 15.40 0.02 34.63 2.29
114 115 6.637658 TGTAATGTGATTTCATATGCAATGCG 59.362 34.615 5.26 0.00 0.00 4.73
184 207 9.142515 GCAATTTGATTTCATATGTGTTTCAGA 57.857 29.630 1.90 0.00 0.00 3.27
185 208 8.927721 TGCAATTTGATTTCATATGTGTTTCAG 58.072 29.630 1.90 0.00 0.00 3.02
186 209 8.828688 TGCAATTTGATTTCATATGTGTTTCA 57.171 26.923 1.90 0.12 0.00 2.69
273 299 1.271871 ACCGGATTTGAACATCTGCCA 60.272 47.619 9.46 0.00 0.00 4.92
280 306 4.345859 AGTTCACTACCGGATTTGAACA 57.654 40.909 30.41 9.23 46.80 3.18
338 364 8.560576 AAAGAAATTACGTGTGATGTTTTCTG 57.439 30.769 0.00 0.00 33.55 3.02
420 449 7.067129 AGCAAGAGAATATAGCCAATGCATATG 59.933 37.037 0.00 0.00 41.13 1.78
478 511 2.445427 CACCATATGTCCACCTTTGCA 58.555 47.619 1.24 0.00 0.00 4.08
607 650 0.514255 CCAACAGTGTCGTGCTGATG 59.486 55.000 0.00 8.17 36.78 3.07
611 654 0.178068 ACTTCCAACAGTGTCGTGCT 59.822 50.000 0.00 0.00 0.00 4.40
633 676 8.404889 TGACATGTCACAACTAATTTTGTTTG 57.595 30.769 24.56 0.00 37.62 2.93
728 776 0.389948 ATGCAAAGAGGTCGACGGAC 60.390 55.000 9.92 3.36 42.66 4.79
774 831 8.677148 ACCATATCGACAAAATTAGCTACATT 57.323 30.769 0.00 0.00 0.00 2.71
1604 4023 3.421844 GCACTCCCACAAATTAAGAGGT 58.578 45.455 0.00 0.00 0.00 3.85
1751 4170 1.203928 GCTCCACAAGATCGATCACG 58.796 55.000 26.47 18.38 41.26 4.35
2124 5946 5.067283 GGCTCCTTTTCTCTAAAAACACACA 59.933 40.000 0.00 0.00 34.26 3.72
2159 5981 2.553247 GGGCTAGGTTTGAGCACTTCTT 60.553 50.000 0.00 0.00 40.38 2.52
2187 6009 3.925913 CCGGTTGATGGCTTTGTTAATTG 59.074 43.478 0.00 0.00 0.00 2.32
2396 6218 1.975407 GCCTGTTGATGCAGCTGGT 60.975 57.895 17.12 0.00 36.42 4.00
2418 6240 0.825010 AGCTCAAGTGTTGCCCAAGG 60.825 55.000 0.00 0.00 0.00 3.61
2447 6269 2.676471 GTGGTGGCCCTTTGCGAT 60.676 61.111 0.00 0.00 42.61 4.58
2462 6284 0.108138 CGAGCCTAGGTGAAAGGGTG 60.108 60.000 11.31 0.00 44.72 4.61
2495 6317 4.007644 CCACTCTGCAGGTCGCCA 62.008 66.667 15.13 0.00 41.33 5.69
2521 6343 8.791355 GCTATAGCTCTTTTCTTAGTAGTGTC 57.209 38.462 17.75 0.00 38.21 3.67
2539 6361 8.778358 GCCATTAATGTCCATATTAGCTATAGC 58.222 37.037 17.33 17.33 42.49 2.97
2540 6362 8.982685 CGCCATTAATGTCCATATTAGCTATAG 58.017 37.037 14.25 0.00 0.00 1.31
2541 6363 7.441157 GCGCCATTAATGTCCATATTAGCTATA 59.559 37.037 14.25 0.00 0.00 1.31
2542 6364 6.260936 GCGCCATTAATGTCCATATTAGCTAT 59.739 38.462 14.25 0.00 0.00 2.97
2543 6365 5.584649 GCGCCATTAATGTCCATATTAGCTA 59.415 40.000 14.25 0.00 0.00 3.32
2544 6366 4.396166 GCGCCATTAATGTCCATATTAGCT 59.604 41.667 14.25 0.00 0.00 3.32
2545 6367 4.155826 TGCGCCATTAATGTCCATATTAGC 59.844 41.667 14.25 6.16 0.00 3.09
2546 6368 5.391950 GGTGCGCCATTAATGTCCATATTAG 60.392 44.000 12.58 0.00 34.09 1.73
2547 6369 4.457603 GGTGCGCCATTAATGTCCATATTA 59.542 41.667 12.58 0.00 34.09 0.98
2548 6370 3.255642 GGTGCGCCATTAATGTCCATATT 59.744 43.478 12.58 0.00 34.09 1.28
2549 6371 2.819608 GGTGCGCCATTAATGTCCATAT 59.180 45.455 12.58 0.00 34.09 1.78
2550 6372 2.226330 GGTGCGCCATTAATGTCCATA 58.774 47.619 12.58 0.00 34.09 2.74
2551 6373 1.032014 GGTGCGCCATTAATGTCCAT 58.968 50.000 12.58 0.00 34.09 3.41
2552 6374 0.322906 TGGTGCGCCATTAATGTCCA 60.323 50.000 16.89 10.79 40.46 4.02
2553 6375 2.487918 TGGTGCGCCATTAATGTCC 58.512 52.632 16.89 8.69 40.46 4.02
2563 6385 3.110139 CCACATACATGGTGCGCC 58.890 61.111 10.11 10.11 34.77 6.53
2569 6391 1.748500 TGGCGCACCACATACATGG 60.749 57.895 10.83 0.00 42.67 3.66
2570 6392 3.902318 TGGCGCACCACATACATG 58.098 55.556 10.83 0.00 42.67 3.21
2580 6402 4.045528 ACTGTTATATAGCAGTGGCGCAC 61.046 47.826 25.91 5.73 44.41 5.34
2581 6403 2.102420 ACTGTTATATAGCAGTGGCGCA 59.898 45.455 25.91 0.00 44.41 6.09
2582 6404 2.755650 ACTGTTATATAGCAGTGGCGC 58.244 47.619 25.91 0.00 44.41 6.53
2587 6409 2.102420 TGCGCCACTGTTATATAGCAGT 59.898 45.455 22.38 22.38 46.55 4.40
2588 6410 2.476619 GTGCGCCACTGTTATATAGCAG 59.523 50.000 21.20 21.20 39.95 4.24
2589 6411 2.479837 GTGCGCCACTGTTATATAGCA 58.520 47.619 4.18 0.00 0.00 3.49
2590 6412 1.798813 GGTGCGCCACTGTTATATAGC 59.201 52.381 12.58 0.00 34.40 2.97
2591 6413 3.059884 CTGGTGCGCCACTGTTATATAG 58.940 50.000 16.89 0.00 40.46 1.31
2592 6414 2.696187 TCTGGTGCGCCACTGTTATATA 59.304 45.455 16.89 0.00 40.46 0.86
2593 6415 1.484653 TCTGGTGCGCCACTGTTATAT 59.515 47.619 16.89 0.00 40.46 0.86
2594 6416 0.899019 TCTGGTGCGCCACTGTTATA 59.101 50.000 16.89 0.00 40.46 0.98
2595 6417 0.253044 ATCTGGTGCGCCACTGTTAT 59.747 50.000 16.89 1.22 40.46 1.89
2596 6418 0.899019 TATCTGGTGCGCCACTGTTA 59.101 50.000 16.89 3.55 40.46 2.41
2597 6419 0.673644 GTATCTGGTGCGCCACTGTT 60.674 55.000 16.89 4.60 40.46 3.16
2598 6420 1.079127 GTATCTGGTGCGCCACTGT 60.079 57.895 16.89 6.73 40.46 3.55
2599 6421 1.079197 TGTATCTGGTGCGCCACTG 60.079 57.895 16.89 7.10 40.46 3.66
2600 6422 1.219124 CTGTATCTGGTGCGCCACT 59.781 57.895 16.89 8.43 40.46 4.00
2601 6423 1.815421 CCTGTATCTGGTGCGCCAC 60.815 63.158 16.89 6.26 40.46 5.01
2602 6424 2.290287 ACCTGTATCTGGTGCGCCA 61.290 57.895 19.93 19.93 43.73 5.69
2603 6425 1.815421 CACCTGTATCTGGTGCGCC 60.815 63.158 10.11 10.11 44.09 6.53
2604 6426 3.799753 CACCTGTATCTGGTGCGC 58.200 61.111 0.00 0.00 44.09 6.09
2608 6430 1.626356 ATGGCGCACCTGTATCTGGT 61.626 55.000 10.83 0.00 36.11 4.00
2609 6431 0.464373 AATGGCGCACCTGTATCTGG 60.464 55.000 10.83 0.00 36.63 3.86
2610 6432 2.238942 TAATGGCGCACCTGTATCTG 57.761 50.000 10.83 0.00 36.63 2.90
2611 6433 3.141398 CATTAATGGCGCACCTGTATCT 58.859 45.455 10.83 0.00 36.63 1.98
2612 6434 2.878406 ACATTAATGGCGCACCTGTATC 59.122 45.455 19.37 0.00 36.63 2.24
2613 6435 2.878406 GACATTAATGGCGCACCTGTAT 59.122 45.455 19.37 0.00 36.63 2.29
2614 6436 2.285083 GACATTAATGGCGCACCTGTA 58.715 47.619 19.37 0.00 36.63 2.74
2615 6437 1.094785 GACATTAATGGCGCACCTGT 58.905 50.000 19.37 3.18 36.63 4.00
2616 6438 0.381801 GGACATTAATGGCGCACCTG 59.618 55.000 19.37 0.00 36.40 4.00
2617 6439 0.255890 AGGACATTAATGGCGCACCT 59.744 50.000 19.37 14.77 36.40 4.00
2618 6440 2.793831 AGGACATTAATGGCGCACC 58.206 52.632 19.37 13.07 36.40 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.