>input_sequence_73294
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---------------------------CTATATAAACCGTCCAGAGATCAAGAGTGTAGTTATCCATATGCACAACTGAT
TAAGATAGTACTAAATTAGAGGCAGAAAGTCTGTGCA--TAGAGG-AAGAATGTCGATGAAGACCGTGTTCTCGGTGCTC
CTACTATGTATGCTCGTGGCGACACCCATAGCAGCCGAGTACGACGCATGGAGCGTTAACAGTGGTCCTTGGATGTG---
CTATCCGGGGCAGGCCTTCCAGGTTCCCGCGCTCCCTGCCTGTCGTCCATTGCTGAGGCTCCAGTGCAATGGCAGCCAGG
TGCCCGAGGCTGTCCTAAGGGACTGCTGCCAGCAGCTCGCCCACATCAG---CGAGTGGTGCAGGTGCGGGGCCCTCTAC
AGCATGTTGGACAGCATGTATAAGGAGCATGGCGCGCAGGAGGGACAGGCAGGGACAGGAGCGTTCCCACGCTGCCGGAG
GGAGGTGGTGAAGCTGACGGCGGCGAGCATCACAGCGGTCTGCA------------------------------------
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------------------------------------------------------------------GGCTACCCATCGTC
GTTGATGCGTCCGGAGATGGAGCGTATGTCTGCAAGGATGTGGCCGCATACCCAGACGCCTAGTCAAGCAAATGAGTAGC
TACTATGTTGTGTCATGCACCTACCTCTTAATTTGTGGGAGTGCGCACAAACTAA-------------------------
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>chr3D_1_TraesCS3D01G095700
AAGCCACTATAAAATATGACCGAAATATAAAAATAATAATTGTGTTGTATATGAAGTCTCGTTACATTGAAAATTGTGTT
GCATATGAAATCACATTACATTACATTATATAATC----------------------GCATTGCATATGAAATCACATTA
CATTATATAATCTGAAACACATATGAAATCACATTACATTATATAATCTGAAACACATATGAAATCAAATTGCATAT---
GAAATCATATTGCATTGCATATGAAACCACAAGGCTTTTGCCGTGTGCTTTTGGCACATGGCAGATGTTCAAATCCGGTA
GTGAACTTTGTCTTGTTGCATATTTGGACTGCGTCTTTTTAAACAGAAAACATCACACGTAATTTCTTTTCCACCAAACT
CCATTGGCCTCGTCGATATGTGCATTCTCTTCTTTTCCAA---TCTTGCATATGCATTGGCTATATTCTCTTGCTTCTTG
AGCACTCCCATTTAATGATTTCCT----CATGCAAAGGTGGACATATGGTGC-------CAAGATGAATCTTGCATTGCT
AGTTTTCTTT-GCGTGATCTAATATAGAATCCTCTAACAAACTATGGGTTTTACTCAGCACTTGAAAAGCTGGCAATTAT
GCAAAC-A-CATCAGCACGACACTGTTGGAAGTTGCAAACAAAATTAGTTGTGACATGTCA----GTATAATATATAC-A
AGCCCACAAGCCACTCACGCAGATGGTATGATGGACAGCTAGGGTTTTATGTCCGGTCCGTCGACCTCTTTGCATTTCCC
TTGCCATA---------TATATGAACCAAAAATGTAGCTAATTTTGTCGATATGGTAAC-------CATCCTAGCTTTTT
AGTAGTGCGATTAACAAACTATGGGTTGTAATCACAATGTTTAGATGCATGCCAAAATACATCACCGCACTGGATCAAGA
ACAACGACGTGGAAGCCCAATCTATAGGCACTAGACACAAGCCACCCACGCAGATCATGAACGGCTTATGTCTGTTTCCT
TGCACCTTT----TTAGCTTTATCTAGCTATATAAACCGTCCAGAGATCAAGAGTGTAGTTATCCATATGCACAACTGAT
TAAGATAGTACTAAATTAGAGGCAGAAAGTCTGTGCA--TAGAGG-AAGAATGTCGATGAAGACCGTGTTCTCGGTGCTC
CTACTATGTATGCTCGTGGCGACACCCATAGCAGCCGAGTACGACGCATGGAGCGTTAACAGTGGTCCTTGGATGTG---
CTATCCGGGGCAGGCCTTCCAGGTTCCCGCGCTCCCTGCCTGTCGTCCATTGCTGAGGCTCCAGTGCAATGGCAGCCAGG
TGCCCGAGGCTGTCCTAAGGGACTGCTGCCAGCAGCTCGCCCACATCAG---CGAGTGGTGCAGGTGCGGGGCCCTCTAC
AGCATGTTGGACAGCATGTATAAGGAGCATGGCGCGCAGGAGGGACAGGCAGGGACAGGAGCGTTCCCACGCTGCCGGAG
GGAGGTGGTGAAGCTGACGGCGGCGAGCATCACAGCGGTCTGCA------------------------------------
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------------------------------------------------------------------GGCTACCCATCGTC
GTTGATGCGTCCGGAGATGGAGCGTATGTCTGCAAGGATGTGGCCGCATACCCAGACGCCTAGTCAAGCAAATGAGTAGC
TACTATGTTGTGTCATGCACCTACCTCTTAATTTGTGGGAGTGCGCACAAACTAAATAAAATGGTGTATGTGCCTATGCG
AAATGCATTGGTAATGAATAAAAGTGAAGTTCCCTGTTTGATCGAGAAATTTCAATCCAACATACAAAAGAATAAGTAGA
CGCATCCCACGTGATCGATCTTGTGGAGCCTTTGGCTATACCGCAGCCAGGTGTTGTTTTTGTAAGAGTGGAAGCATCCG
GGTGCTG-------------------------------------------------------------------------
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--------------------------------------------GT----AGAGGGCGTTGCATCAGCTAGTAATATGCA
CAATCTCAGGGAGAGAGAAATTCGCTAGCACCGGTGCAAAATGATGTGACAATTGATGTGAACTTAAAAAACAAATAGGT
ACATTGTATAGTTTATTCCGTGGTATAAAACTAG--AAGTAACCAAAATCTTAGAAAATATATGTTTCCATCTTTGCATA
TGATTTAAATGCATTTATGCACCTGTTTTCATGCACAACTGCCATCATGTTGTCCGATTTCTTTGTGATATATGCACCCC
GTTTATCCTTTCTCGTGTTCACTAATGTGTGTTTTTAGAGAAAAGGAGCCGGCCGAACCCAAGAAGTGCTCAAACCTAGC
CCGACTTTCAATTAACAAAGCCATCAACCGGCCAGGATTACAAGGGCACCACATTACAAAGGAGGTGCAAAGCAAAGCAG
AAAGGAAGATACAAGGCACTAGGCAGAACAACACAAAGGCAACAACAGGAACGCTGATGCCGACAACCGGCACTACGCCT
ACACCGACTAGCCAACTAAGTACACGGAAGAAGGGCCACACCGAGCAAGCATTGAGCACCAGCTGCATCAACAGGCCAAC
CTTGGGCAACACTTGAGCTGTCTCCGCCATCGCAAAGGGCCACCACCCTTTCACCTAGGCTCGATGGGTGCCGCACTGGC
GACCTGCAGAGTGGCTACCACAGACACTACTAAGAAAAGAGCTATAGCTAATATGGACATTAATGGCGCACCATGTATGT
GGTGCGCCACTGCTATATAACAGTGGCGCACCAGATACAGGTGCGCCATTAATGTCCT
>chr3B_3
--GCCACTACAAAATATGACAAAATTATAAAAATAATAGTTGTGTTGCATATGAAATCTTGAGACATTAAAAATTGCATT
GCATACGAAATCAGATTACATTACATTATATAATTGCATTGCGTATGAAACCATATTGCATTGCATATGAAATCACATTA
CATTATATAATCTGAAATCA----------------------------------------------------CATAC---
GAAATCATATTGCATTGCATATGAAACCACAAGGCTTTTGCCGGGTGCTTTTGGCACCCGGCAGACGTTCAAATCCGGTA
GTGAACTTAGTCTTGTTGTATATTTGGACTGCGTCTTTTGAAAGAGAAAACATCACGCATGATTTCTTTTCTACCAAACT
CCATTGGCCTCGTTGATATGTTCATTCTCTTCTTTTCCAA---TCTTGTGTATGCATTGGCTGTATTCTCTTGCTTCTTG
AGCACTCCCATTTAATGATTTCCTCACGCA----AAGGTGGACATATCGTGC-------CAAGATGAATCTTGCATTCCT
AGTTTTCTTTTGCGTAAACTAATATAGGATCCTCTAACAAACTATGGGTTTTACTTAGGACTTGGAAAGCTGACAATTAT
GCAAAC-AAAATCCGCACGACATTGTTGGAAGTTGAAAAAAA-GTTAC----GATGCGTCA----ACATA----ATAC-A
AGCCCACAAGCCACTCACTCAGATGGTATGATGGACAGCTAGGGTTTTATGTCCGTTCCGTGCACCTCTTTGCATTTCCC
TTGCCATA---------TATATGAACCAAGGATGTAGCTAACTTTGTCGATA---TGGTAACCAT----CCTAGCTTTTT
AGTAG-----TTAACAAACTATGGGTTGTAATCACAATGTTCAGATGCATGCC-AAATACATCACCGCACTGGATCAAGA
ACAACGACGTGGAAGCCCAAGCTATAGGCACTAGACAAAAGCCACCCACGCAGATCATGAACAACTTATGTCTATTGCCT
TCCACCTTT----TTAGCTTTATCTAGCTATATAAACCGTCCAGAGATCAAGAGTGTAGTTATCCATATACACAACTGGT
TAATATAGTACTAAATCAGAGATAGAAAGTCTGTGCG--CAGAGG-AACAATGTCGATGAAGACCGTGTTCTCGGTGCTC
CTGCTATGTATGCTCGTGGCGACACCCATAGCGGCCGAGTACGACGCATGGAGCGTTAACAGTGGTCCCTGGATGTG---
CTATCCAGGGTATGCCTTTAAGGTGCCAGCGCTCCCTGGCTGTCGTCCAGTGCTGAAGCTCCAGTGCAATGGCAGCCAGG
TGCCCGAGGCTGTCCTAAGGGAGTGCTGCCAGCAGCTCGCCGACATCAG---CGAGTGGTGCAGGTGCGGTGCCCTCTAC
AGCATGTTGGACAGCATGTATAAGGAGCATGGCGTGCAGGAGGGACAGGCGGGGACAGGCGCGTTCCCAAGCTGCCGGAG
GGAGGTGGTGAAGCTGACGGCGGCGAGCATCACGGCGGTCTGCA------------------------------------
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------------------------------------------------------------------AGCTACCCATCGTC
ATTGATGCGTCTGGAGATGGAGCGTATGTCTGCAAGGGTGTGGCCGCATACCCGGACGCCTAGTCAAGCGAATGAGTAGC
TACTATGTTGTGTCATGCATCTGCCTCTTAATTTGTGGG-GTGCGCACAAGTTGAATAAAATGGTGTATGCGCCTATGCG
AAATGCATCATTAATGAATAAAAGCGAAGTTCCCTGTT-GATCGAGAAATTTTGATCCAGCATGCAAAAGAATAAGTAGA
CGCATCTCCTGTGGTCGATCTTGTGGAGCCTTTGGCTATACCGCAGCTAGGTGTTGTTTTTGTAAGAGTGGAGGCATCCG
GGTGCTG-------------------------------------------------------------------------
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--------------------------------------------GTAGTCAGAGGGCGCTGCATCAACTAGTAATATGCA
GAAACTCACGGAGAGAGAAATTCGCTAGCACCGGTGCAGTATGATGTGACAATTAATGTGAACTTAAAAAATAAATAGGT
ACATTGTATAGTTTATTCTGTGTTATAAAACTATATAAGTAACCAAAATCTTAGAAAATATATGTTTCCATCTTTGCATC
TGATTTAAATGCGTTTATGCACCTGTTTGCATGCACAACTGCCATCATGTTGTCTGATTTCTTTGTGATATATGCACCCC
GTTTATCCTTTCTCATGTTCACTAACATGTCTTTTTAGAGAAAAGGCGCTGGCCGAACCCGAGAAGAGCTCGAACTTAAC
CCAACTTTGAATTAATTAAGCCATCAACTGGCCAGGATTACAAGGGCACCACATTACAAAGGAGATGCAAAGCAAAGCAG
AAAGGAAGATACAAGGAACTAGGCAGAACAACACAAATGCAACAGCGGGAATGCCGATGCAGACAACTAGCACTACGCCT
GCACCGACTAACCAACTAAGTACACCGAAGAAGGGCCACACCGAGCAAGCATTGAGCGCCAGCTGCATCAACAAGCCAAA
CTTGGGCAACACTTGAGTTGTCTCCGTCGTCGCAAAGGGCCACTACCCTTTCACCCAGGCTTGATGGGTGCCGCACCAGC
GACCGACAGAGTGGCTACCACA----------------------------------------------------------
----------------------------------------------------------
>chr3D_4
---CCACTATAAAATATGACAGAATTATAAAAATAATAATCGTGTTGCATATGAAATCTCGTTACCTTAAAAAT------
----------TCAGATTACATTACATTATATAGTTGCATTGCATGTGAAACCATATTGCATTGCATATGAAATCACATTA
CATTACATAATCTGAAATCA----------------------------------------------------CATAT---
GAAATCATATTGCATTGCATATGAAACCACAAGGCTTTTGCTGTGTGCTTTTGGCACACGGCAGACGTTCAAATCCGGTA
GTGAACTTTGTCTTGTTGTATATTTGGACTGCGTCTTTTTAAAGAGAAAACGTCACACATAATTTCTTTTCCATCAAACT
CCATTGGCCTTGTTGATATGTTCATTCTCTTCTTTTCCAA---TCTTGTGTATGCATTGCCTATATTCTCTTGCTTCTTG
AGCACTCCCATTTAATGATTTCCT----CA----AAGGTGGACATATCGTGC-------CAAGATGAATCTTGCATTCCT
AGTTTTC-TTTGCGTAAACTAATATAGGATCCTCTAACAAACTTTGGGTTTTACTTAGGACTTGGAAAGCTGACAATTAT
GCAAAA-A-AATCCGCATGGCACTGTTGGAAGTTG-AAAAAAAATTAGTTGTGATGTGTCA----ACGTAATATATAC-A
AGCCCACAAGCCACTCATGCAGATGGTATGATGGACAACTAGGGTTTTATGTCCGTTCCGTCGACCTCTTTGCATTTCCC
TTGCCATA---------TATACGAACCAAGGATGTAGCTAATTTTGTCGATATGGTAAC-------CATCCTAGCTTTTT
AGTAGTGCGATTAACAAACTATGGGTTGTAATCACAATGTTTAGATGCATGCCAAAATACATCACCGCACTGGATCAAGA
ACAACGACGTGGAAGCCCAATCTATAGGCACTAGACACAAGCCACCCACGTAGATCATGAACGGCTTATGTCTGTTTCCT
TGCACCTTT----TTAGCTTTATCTAGCTATATAAAACGTCCAGAGATCAAGAGTGTAGTTATCCATATACACAACTAAT
TAAGATAGTACTAAATTAGAGGCAGAAAGTCTGTGCA--TAGAGG-AAGAATGTCGATGAAGACCATGTTCTCGGTGCTC
CTACTATGTATGCTCGTGGCGACACCCATAGCAGCCGAGTACGACGCATGGAGCGGTAACAGTGGTCCTTGGATGTG---
CTATCCGGGGCAGGCCTTCCAGGTGCCCGCGCTCCCCGCCTGTCGTCCATTGCTGAGGCTCCAGTGCAATGGCAGCCAGG
TGCCCGAGGCTGTCCTAAGGGACTGCTGCCAGCAGCTCGCCCACATCAG---CGAGTGGTGCAGGTGCGGGGCCCTCTAC
AGCATGTTGGACAGCATGTATAAGGAGCATGGCGCGCAGGAGGGACAGGCAGGGACAGGAGCGTTCCCACGCTGCCGGAG
GGAGGTGGTGAAGCTGACGGCGGCGAGCATCACAGCGGTCTGCA------------------------------------
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------------------------------------------------------------------GGCTACCCATCGTC
GTTGATGCGTCCGGAGATGGAGCGTATGTCTGCAAGGATGTGGCCGCATACCCAGACGCCTAGTCAAGCAAATGAGTAGC
TACTATGTTGTGTCATGCACCTGCCTCTTAATTTGTGGGAGTGCGCACAAACTAAATAAAATGGTGTATGTGCCTATGCG
AAATGCATTGGTAATGAATAAAAGTGAAGTTCCCTGTTTGATCGAGAAATTTCAATCCAACATACAAAAGAATAAGTAGA
CGCATCCCATGTGATCGATCTTGTGGAGCCTTTGGCTATACCGCAACCAGGTGTTGTTTTTGTAAGAGTGGAAGCATCCG
GGTGCTG-------------------------------------------------------------------------
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--------------------------------------------GT----AGAGGGCGTTGCATCAGCTAGTAATATGCA
CAATCTCAGGGAGAGAAAAATTCGCTAGCACCGGTGCAAAATGATGTGAGAATTGATGTGAACTTAAAAAACAAATAGGT
ACATTGTATAGTTTATTCCGTGGTATAAAACTAG--AAGTAACCAAAATCTTAGAAAATATATGTTTCCATCTTTGCATC
TGATTTAAATGCATTTATGCACCTGTTTTCATGCACAACCGCAATCATGTTGTCCGATTTCTTTGTGATATATGCACCCC
GTTTATCCTTTCTCGTGTTCACTAACGTGTGTTTTTAGAGAAAAGGAGCCGGCCGAACCCGAGAAGTGCTCAAACCTAGC
CCGACTTTTAATTAACAAAGCCAACAACCGGCCAGGATTACAAGGGCACCACATTACAAAGGAGGTGCAAAGCAAAGCGG
AAAGGAAGATAAAAGGCACTAGGTAGAACAACACAAAGGCAACAGCAGGAACGCCGATGCCGACAACCGGCACTAAGCCT
ACACCGACTAGCCAACT---------------------------------------------------------------
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>chr3B_200
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-------------------------------------------------------------AAATCACATTGCAAAGATG
GAAATCATATCGCATTGCATATGAAACCACAAGGCTTTTGCCGTGTGCCAA-----------AGACATTCAAATCCGGTA
GTGAACTTTGTCTTGTTGTATATTTGGACGGCGTCTTTTGAAAGAGAAAACATCACACATGATTTCTTTTTCACTAAACT
CCATTGGCCTCGTTGATATGTTCGTTCTCTTCTTTTCCAA---TCTTGTGTATGCATTCGCTATATTCTCTTGATTCTTG
AGCACTCCCATTTAATGATTTCCT----CACGCAAAGGTGGACATATCGTGC-------CAAGATGAATCTTGCATTCCT
AGTTTTCTTT-GCATAAACTAAGATGGGATCCTCTGACAAACTGTGGGTTTTATTTAGAACTTGAAAAGCTGACAATTAT
GCAAAC-A-AATCCGCACGACACTGTTGGAAGTT---AAAAAAAATAGTTGTGATGTGTCA----GCATAATATATAC-A
AGCCCACAAGCCACTCATGTAGATGATATGATGGACGGCTAGGGTTTTATGTCCGTTCTGTGGACCTCTTTCCATTTCCG
CTGCCACA---------TATATGAACCAAAGATGTAGCTAATTTTGTCTATGTGGTA-----------------------
------GAGATTAACAAACTATGGGTTGTAATCACAATGTTTAGATGCATGCCAAAATACATCGCCGCACTGGATGAAGA
AAAATGACGTGGAAGCCCAAGCTATAGGCACTAGACAGAAGCCACCCACGTAGATCATGAACAACTTATGTCTGTTTCCT
TGCACCTTT----TTATCTTTATCTAGCTATATAAACCGTCCACAGATCAAGAGTGTAGTTATCCATATACAGAACCATT
TAAGATAGTACTAAATCAGAGACAGAAAGTCTGTTCG--CAGAGG-AACAAAGTCGATGAAGATCGTGTTCTCGGTGCTC
CTGCTATGTATGCTCGTGGCGACACCCATAGCGTCCGAGTACGGCGCATGGAGCTATAACAGTGGTCCCTGGATGTG---
CTATCCGGGGCAGGCCTTCCAGGTGCCCGCGCTCCCTGGCTGTCGTCCATTGCTGAAGCTCCAGTGCAATGGCAGCCAGG
TGCCCGAGGCCGTCCTAAGGGACTGCTGCCAGCAGCTCGCCGATATCAG---TGAGTGGTGCAGGTGCGGTGCCCTCTAC
AGCATGTTGGATAGCATGTATAAGGAGCATGGCGTGTCGGAGGGACAGGCGGGGACAGGCGCATTCCCAAGCTGCCGGAG
GGAGGTGGTGAAGCTGACGGCGGCGAGCATCACGGCGGTCTGCA------------------------------------
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------------------------------------------------------------------GGCTACCCATCGTC
GTTGATGCGTCCGGAGATGGAGCGTATGTCTGCAAGGATGTGGCCGCATACCCGGATGCCTAGTCAAGCGAATGAGTAGC
TAATATGTTCTGTGATACATCTGCCTCTTAATTTATGGG-TTGCGCACAAGCTGAATAAAATGGTGTATTCACCTATGCG
AAATGCATCGTTAATGAATAAAAACGAAGTTCCCTGTT-GATCGAGAAATTTCAATCCAGCATACAAAAGAATAAGTAGA
CGCATGCCCTGTGATCGATCTTTTGGAGCCTTTGGCTATATCGTAGCCAGC---TATTATTGTAAGAGTGG---CATCCG
GGTGCT--------------------------------------------------------------------------
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>chr3B_262
GCC-----------------------------------------------------------------------------
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-------------------------------------------------TTTGGCACACGGCAGACGTTCAAATTCGGTA
GTGAACTTTTCCTTGTTGTATATTTGGACTGAGTCTTTTTAAAGAGAAAACATCATACGTGATTTCTTTTTCACCAAACT
CCATTCGCCTCATCGATATGTGCATTCTCTTCTTTTTCCAATCTCGTGTATATGCATTGACTATATTCTCTTGCTTCTTG
AGCACTCCCATTTAATGATTTCCT----CACGT----------ATACCGTGT-------CAAGATGAATCTTGCATTGCT
AATTTTCTTT-GCGTGAACAAATATAGGATCCT-----------------TTATTCAGGACTTGGAAAGCTGTCAATTAT
GCAAAC-A-GATCCGCGCGC------------------------------------------------------------
----------------------------TGTTGGACAGCTAGGGTTTTATGTCCGTTCTGTGGACCTCTTTCCATTTCAC
CTACCATA---------TATATGAACCAAGGATGCAGCTAATTTTGCCGATATGGTAAC-------CATCCTAGCTTTAT
AGTAGTGGGATTAACAAACTACGGGTTGTAATCACAATGTTTACATGCATGCCAAAATACATCACCGCACTGGATCGAGA
ACAATGACGTGGAAGCACAAGCTATAGGCACTAGACAGAAGCCACCCACGCAGATCATGAACAACTTATGTCTGTTTCCT
TGCACCTTT----TTATCTTTATCTAGCTATATAAACCGCCCAGAGATCAAGAGTGTAGTTATCCATATACACAACTGAT
TAAGATAGTACTAAAACCGAGGCAGAAAGTCTGTTCG--CAGAGGAAACAATGTCGATGAAGACCATGTTCTCGGTGCTC
CTGCTATGTATGCTTGTGGCAACACCCATAGCGGCCGAGTACGGCGCATGGAGCGATAACAGTGGTCCCTGGATGTG---
CTATCCCGGGTATGCCTTCAAGGTGCCCGCGCTCCCTGGCTGTCGTCCAGTGCTGAAGCTCCAGTGCAATGGCAGCCAGG
TGCCCGAGGCTGTCCTAAGGGACTGCTGCCAGCAGCTCGCCGACATCAG---CGAGTGGTGCAGGTGCGGTGCCCTCTAC
AGCATGTTGGACAGCATGTATAAGGAGCATGGCGTGCAGGAGGGACAGGCGGGGACAGGCGCGTTCCCACGCCGCCGGAG
GGAGGTGGTGAAGCTGACGGCGGCGAGCATCACAGCGGTCTGCAAGCTACCAGGGTTGGGGCCACTGTTGTGCAGAACGT
GCGGCCCGCACAGGGCCCAATTTTTTTTATATAAGACTATATACCAAACATTAGGAATTAGAAGCAAGGGATAATTAGAC
GGATTGGTAATGGTCAAACGACAAACATCTGGACGGACAACTGGATCCCGAAGGAAACCACGCCAATACCAATCACTTCC
CTGGTGGCGAATCCACCGAGGATGGTTTCAGAACTGCTGTCACCAGCAACAGCAGGGTGGGACGAAGTTTTGGTGCCTTC
GGTCCTCTTACCCATAGATGCGAATGCAATACTAAAGATACCCACATGCACTAATAATACTGAGGATTTTTGGGCTTGGT
ACCCGGATAAGAAAGGGAAATTTTCAGTTGCGTCGGCATATAAATTTTTACTCAAGGTTAAACTGCAGCGAGATGATTGG
TTAGAGGGACGAGGTGGATCATCTAACACCCACATGGATGAAAAATCTTGGAGTCCTTTGTGGAAATTGAAGGTTCCGTC
CAAAGTGCGGATTTTCTTATGGCGACTTGCACACCACTCACTCCCGACCACTGACGTCTTGAAGAAGCGTAATATGTCAG
TACAGGATGTGTGCCCACTGTGTGGATGTCAAGATTCATGGAGACATGCCCTTGTCTCTTGCACTATGTCCAGATGCATT
TGGGCGATGACGGACGATGATCTTGTCTCACGCATGACAGCTAATGCAGAACCTAATGCAAGACTCTGGCTGTTTGAGCT
CAGCGACAAACTTGATCAAGCGAGCTTCACAAGGATGGCTGTTACTCTGTGGTCAATCTGGTATGCTAGAAGCAAGGCAG
TGTATGAGTCTTTGTTTTAGAGCCCTCAGCAAACAATCCGTTTTGGGGACAATTTTATATCTGAATTGGGCCAACTTGAA
AGTGGGCAGGGACGTAGGGAGCAAAGAGCACCTCTAACTGCTCAGCCTAAGCGGTGGCTCCCACCACCCAATGGTTCTGT
AAAGATTAATGTAGATGATGCTATTGTAAGATCACAACGTGGAGGAGCTGTCGCGGCAATGTGCAGAGATCAAACGGGCC
AATATTTGGGATCTTCGGCTGTGGTCTTCCTAGGAATCAATGACCCTTTAATTCTGGAGACCTTTGCATGTCGTGAAGCA
TTATCGCTAGCAGATGATTTGGCCGTCCAAAATATCCGTGTTGCTTCGGATTGTCAAGAAGCGGTTAATGATATTACAAA
GGGGACAGGAGGTCCAAATGCGGCTATCGTACATGAGATATCAAGCCGATGTAATACTTTCAATTCCAGTTTCTTTCTTT
TCGAGCGTAGGAATTTTAATTTTAAGGCTCATAATCTTGCCAAGTTTGCTTGTAACCTAGGCGTAGGAAGGCATGTGTGG
TTGGGCAATCCCCATGACCCAAACCTTGTACCCAAGACCATGGTTTTGAATGAATAAAGATGGCGGGATTTCTCAAAAAA
AAAAAGGGAATAGGGCTAGTGCCGGAACGCTTGGCCACATCCCACTGGGCACTGGGCTGCAATCACATTCGCGACTCTGC
CTGGGCGTGCGTCAGTCGCGATCCTTCCTCACCCGGTCAACGCTCGCATGCACTCTGCCCAGTTACATAATCTTGTTTCC
AGGCCAAAGTGCACCGTAGAAAAAAAAACTGAGGCCAAAACTGAGGCCAGTTGTTAAGTCTGTAGTTCAGGACAGACAGG
CCAATGCATGCTTCCCCATGCACCTTTTGCTCGGTAGCTCCTTTTAACATTTATTTCAGTGAACTTTAGGTTCACAATTT
TTCAAATATCCCCATCATAGGCTACTAGAGCACATAGAATTAATCTTGAGAGACGATCGATTAGGCTACCGACGGGAGAA
CTGTCATGACTCGAGCACCAAGCTCTCAATTCGTTGTATGTTCTTGACCTCCTCTACCCAGCGCGATCGGCTGATAGAGG
TCGGCAATTCGGCGGAGAGATGTCGTGAGGTCCATTCTCAACAGGAGCAGCACTACAGTACTTTGACCCGGAATAATCAC
CACGAATTTAGCAATTCTTTCAATACTTCAATAGATCAATGATGCACATCCCTTAATTTTGTTTTATTTCTTTCTTATTT
AGTGCTTCAAGAATCTAGATGGGTCACCAATCAAGTCTTTTACAAGCATATGTAATGTTTTCTTATTTCTGTAATTTTGT
TTTTATAATGAGATGGGGCCTCATTTTTTAGTTTGTACAAGCATATGTAATGTTTTCTTATTTCTGTAATTTTGTTTTTA
TAACGAGATGGGGCCTCATTTTTTAGTTTGGCACAGGGCCCCAGATTTTACCGGCCTGGCCCTGCAAGCTACCCATCGTC
GTTGATGCGTCCGGAGATGGAGCGTATGTCTGCAAGGATGTGGCCACATACCCAGACGCCTAGTCAAGCGAATGAGTAGC
TACTATGTTGTGTCATGCATCTGCCTCTTAATTTGTGGG-GTGCACACAAGCTGAATAAAATGGTGTATGCGCCTATGCG
AAATGCATCGTTAATGAATAAAAGCGAAGTTCCTTGTT-GATCGAGAAATTTTGATCCAGCATGCAAAAGAATAAGTAGA
CGCATCCCCTCTGCTCGATCTTGTGGAGCCTTTGGCTATATCGCAGCCAAC---TGTTGTTGTAAGAGTGG---CATCCA
GGTGCTCGTAGGGTGTGTTTAGTAGGGTGCATGAGGTTAAAAGTTTTCAATCCGACCTACTTTTGCTTGTTTGATAGGGT
ACATGGGCTCACCTGGGCTATGCTCAACTGATGCAAAAAAGGGCCCTCGGTTATGCCCACCTTATGCACCCCAAAGAGAG
TGCATGGAGGCAGCCATGCTGGCCCCGACCCTCGTCCCCACCCACCAGACCACGTCTAGATATGTTTAAGTTTTCAAAAA
GTATTCATAATTTCAAATTTTGTTTAAATTTTCAAAATATGTTTAGAATTTCAAATTTGGTTTAAATTTTCGAAAAAGTT
CAGAATTTCAAAATCATTTGATTTTTGAAAATGTTCAGAATTTCAAAATTGTTTAAATTTTCAAAAAATGTGCAGAATTT
CAATATTTATTTAAACTTTTGAAAAATGTTCAGAATTTAAAAATTTATTTAAATTTTTGAAAAATTTCAATTTTTTTTAA
ATTTTCCAAATATATTTAGAATTTCAAATTTTGTTTAAATTTTCAAAAAAGTTCAGAATTTCAAAATCATTTAAATTTTG
AAAATGTTCAGAATTTCAAAATCGTTTAAATTTTCAAATGTTCATAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTAAAAAGCGTTCAAAA
TTCCAAGTTTTGTTTAACAAAAATGTTCAAATTTTCAAATGTGGTTTATAATTTTTGAAAAAATTCAATTTTTTTAAAAT
TTTCTTAAAAATTCAGACTTTCAAAATATGTTTATATTTTCAAAAAAATATTCAGAATTTTTAATTTCATTTAAATCTCC
AAAAAATGTTTAGAATTTAAAATTTTGTTTAATTTTTCAATAAAAGTTCAGAATTTCAAATATGTTTAATTTTGTTTTAA
CCATTCAAGAAAATTATTCAGAATTCGAAATTGCTCAGCATGTCTAAACACATGCAGACTGCCAAACAAAGTCTCAGATT
AGCATGTCTCAGCACATATACCGCTGCCAAATGACAGCAAATGCATGAATTCAACATGTCTACACTCAGCATGTATGAGA
GAAAAACAACTAGGCTAGGTCCATACATGCTACTTAACACACCCGT----AGAGGGCGTTGCATTATCTAGTAATATGCA
CAAACTCACGGATAGAGAAATTCGCTAGCACCGGTGCA---------------TGATGTGAACTTAAAAAACAAATAGGT
ACATTGAATAGTTTATTCTGTGGTATAAAACTAA--AAGTAGCCAAAATATTAGAAAATATATGTTTCCATCTTTGGGTC
TGATTTAAATGCATTTATGCACCTGTTTGCATGCACAACTGCCATCATGTTGTCCGATTTCTTTGTGATATATGCACCCC
GTTTATCCTTTCTCATGTTCACTAACATATCATTTTAGAGAAAAGGCGCCGGCCGAACCCGACAAGAGCTTGAACCTAGC
CCGACTTTGAATTAACAAAGCCATCAACCGGCCAGGATTACAAGGGCACCACATTACAAAGGAGATGCAAAGCAAATCGA
AAAGGAAGATACAAGGAACTAGGCGGAATAACACAAAGGCAACAACAGGAACGCCGATGCCGACAACCAGCACTACGCCT
GCACCGACTAGCCAACTAAGTGCACGGAAGAAGGGCCACACCGAACAAGCATTGAGCGTCAGCTGCATCAACAAGCCAAA
CCTGGGCAACACTTGAGCTGTCTCCGCCGTCGCAAAGGGCCACTACCCTTTCACCTAGACTCGACGAGTGCCGCACAGGC
GACCGACAGAGTGGCTACC-------------------------------------------------------------
----------------------------------------------------------
>chr3A_269
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------GCACAAGGCAGACGTTCAAATCCGGTA
GTGAACTTTGTCTTGTTGTATATTTGGACTGCGTCTTTTTAAAGAGAAAAC-TCACACGTAATTTCTTTTCCACCAAACT
CCATTGGCCTCGTTGATATGTTCATTCTTTTCTTTTCCAA---TCTTGTGTATGCATTGGCTATATTCTCTTGCTTCTTG
AGCACTCCCATTTAATGATTTCCT----CA----AAGGTGGACATATCGTGC-------CAAGATGAATCTTGTATTCCT
AGTTTTCTTT-GCGTAAACTAATATAGGATCCTCTAACAAACTGTGGGTTTTACTTAGGACATGGAAAGCTGACAATTAT
GCAAAAAAAAATCCGCATGGCACTGTTGGAAGTTGAAAAAAA-ATTAGTTGTGATGTGTCA----GCATAATATATAC-A
AGCCCACAAGCCACTCATGCAGATGGTATGATGGACAACTAGGGTTTTATGTCCGTTCCGTCAACCTCTTTGCATTTCCC
TTGCCATA---------TATATGAACCAAAGATGTAGCTCATTTTGTCGATA---TAAC-------CATCCTAGCTTTTC
AGTAGTGAGATTAACAAACTCTGGGTTGTAATCACAATGTTTAGATGCATGCCAAAATACATCACCGCACTGGATCAAGA
ACAACGACGTGGAAGCCCAAGCTATAGGCACTAGACACAAGCCACCCACGCAGATCATGAACAGCTTATGTCAGTTTCCT
TGCAGCTTT----CTAGCTTTATATAGCTATACAAACCCTCCAGAGATCAAGAGTGTACTTATCCATATACACAACTGAT
TAAGATAGTACTAAATCGGAGACAAAAAAAGTTTGCGTGTAGAGG-AACAATGTCGATGAAGACTGTGTTCTCGGTGCTC
CTACTATGTATGCTCGTGGCGACACCCGTAGCGGCTAAGTACGATGCATGGAGCGATAACAGTGGTCCTTGGATGTG---
CTATCCAGGGTATGCCTTCCAGGTGCCCGCGCTCCCTGGCTGTCGTCCACTGCTGAAGCTCCAGTGCAATGGCAGCCAGG
TGCCCGAGGCTGTCGTAAGGGACTGCTGCCAGCAGCTCGCCAACATCAG---CGAGTGGTGTAGGTGCGATGCCCTCTAC
AACATGTTGGATAGCATGTATAAGGAGCATGGCGCGCAGGAGGGACAGGCGGGGACAGGAGCGTTCCCACGCTGCCGGAG
GGAGGTGGTGAAGCTGACGGCGGCGAGCATCACGGCGGTCTGCA------------------------------------
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------------------------------------------------------------------AGCTACCCATCGTC
ATTGATGCGTCGGGAGGTAGAGCGTATATCTGCAAGGATGTGGCCACATACCGGGACGCCTAGTTAAGCGAATGAGTAGC
TACTATGTTGTGGCATGCATCTGCCCCTTAATTTGTGGG--TGCGCACAAGCTAAATGAAATGGTGTGTATGCCTATGCG
AAATGCATCGTTGATGAATAAAAGTGAAGTTCCCTATT-GATGAGAATTT------------------------------
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>chr6D_465
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------------TAATGTTTTCCT----CACGCAAAGGTGTGCATACGTACCTTGCCAACAAAATGAATTATGCATTGCT
AATTTTGTTC-GCATGAATTAACTTAGGATCCACCAACAAATTCTGGGTTTTACTTAACATTCAGAAAGCTTCCAATTTT
ATGAAC-A-GATCCTGATGACACTCTTGGAAGATGGAAGAAA-GCTAATTGTAACGTGTCAGCATGTATAATATATACAA
AGCCCACAAGCCACTCATGCAGATGGGGTGATGGATAGCTGGGGTTTTATGTCCGTTCTTTGCACCCCATTGCATTTTCC
TTGCTATATGTATACTGTATATGGACAAAGGATGTAGCTAATTTTGTCGATA---TGGTAACCATGTATGCTAACTTTTT
AGTAGTTAGACTAACAAACTATGAGTTGTAATCACAAAGTTGCCAAGCATGACAAAATACCTCACGGGGCTAGATCGAGA
ACGGAGGCGTGCAAGCAAACGCCGCTGGCACCAGGCGCAAGCCACCCACGGAGATCATGAACACCTC-------------
--------T----TTATCTTTCTCTCGCTATATAAGCCGTCCAGAGATCAAGATTGTAGCTACCCATATAGACAGCTGAT
TAAGATAGTACTAAATT---------------------------GAAACAATGTGGATGAAGACCGTGTTCTGGGGGCTC
CTAGTATTCATGCTCGTGGCGACAACAATGGCGGTCGAGTATGGTGCAAGGAGCCATAACAGTGGTCCTTGGAGTTGGTG
CGATCCGGCGACGGGCTACAAGGTGAGCGCACTCACGGGCTGCCGGGCAATGGTGAAGCTCCAGTGTGTGGGCAGTCAGG
TGCCCGAGGCTGTCCTAAGAGATTGCTGCCAGCAGCTGGCCGACATCAACAACGAATGGTGCAGGTGCGGGGACCTCAGC
AGCATGTTGCGTAGTGTTTATCAGGAGCTCGGCGTGCGTGAGGGGAAGGAGGT---------GCTCCCAGGTTGCCGGAA
GGAGGTGATGAAGCTCACGGCGGCGAGCGTGCCTGAGGTCTGCAAGGTGCCCATTCCCAACC------------------
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-------CGTCGGGAGACAGAGCAGGTGTCTGCTACTG---GGCCGCGTATCCGGACGTCTAGTCAAGCGAAT-------
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>chr6B_777
TGTGC---------------------------------------------------------------------------
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--------------------------------------TAATTTTGTCGATACGGTAGTAACCATGCATGCTAACTTTTT
AGTAGTGTGATTAACAAACTATGGGTCGTAATCACAATGTTCCAGTGCATGCCAAAATACCTCACGACACTAGATTGAGA
ATGGAGGCGTGCAAGCAAACGCCGTTGGCACCGGGCAAAAGCGACCGATGGAGATCATGAGCACCTC-------------
--------TTTAATTAGGTTTCTCTAGCTATATAAACCGTCCAGAGATCAAGAGTATAGCTACCCATACAGACAACTAAG
TAAGATAGGGCTGAATC--------------------------GG-AACAATGTGGATGAAGACCATGTTCTTGGTGCTC
CTACTATGCATGCTGGTGGCGACACCAATGGCGGCCGAGTACGGCGTGGGGAGCCATAACAGTGGTCCTTGGATGTGGTG
TGATCCGGCGATGGGCCACAGGGTGAGCCCGCTCACGGGATGCCGAGCAATGGTGAAGCTCCAGTGCGTGGGCAACCAGG
TGCCGGAGGCTATCCAAAGAGACTGCTGCCAGGAGCTCGCCAACATCACCAACGACTGGTGCAGGTGCCATGACCTCGGC
AGCATGCTGAACAGCGTGTATCAGGAGCTCGGCGCGCGGGAGGGAACGGAGGT---------GTTCCCGGGTTGTCGGAA
GGAGGTGATGAAGCTCACAGCGGCGAGCGTGCCTGCGGTCTGCAAGGTGCCCAT--------------------------
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----------------------------------------------------------
>SNPs
SS------------------S---S----------------------S-------S------------S-------SS--
-----S-------S--------------------S---------------------------------------------
-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S------------
----------------------------------------------------------S------S--------------
------------------S------------------------S------------------------------------
------------------------------------------------S-------------------------------
------------------------------S-------------------------------------------------
-----------------S---------S--------------------------------------------S-------
---------S---S---------------------S---S---------------S------------------------
-------------------------------------------------------S------------------------
------------------------------S-------------------------------------------------
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---------------------------------------------------------------------S----------
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------------------------S-------------------------------------------------------
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----------------------S---------------------------------------------------------
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---------S----------------------------------------------------------------------
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-------------------------------------------------------------------------------S
--------------------------------------------------------------------------------
-------------------------S----------------------------------S-------------------
--------S-----------------------------------------------------------------------
------------------------------------------------------S-------------------------
---------------------------------------------------------S---------------S-----S
----------------------------S--------------S--------------------------------S---
----SS----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_676
--------------------------------------------------------------------------------
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----------------ACGACACTGTTGGAAGTTGC--------------------------------------------
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>reverse_6284
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-------------------------------------------CACCCTTTCACCTAGGCTCG-----------------
--------------------------------------------------------------------------------
----------------------------------------------------------
