Multiple sequence alignment - TraesCS3D01G090300
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3D01G090300 | chr3D | 100.000 | 3481 | 0 | 0 | 1 | 3481 | 45921227 | 45924707 | 0.000000e+00 | 6429.0 |
1 | TraesCS3D01G090300 | chr3D | 88.199 | 483 | 31 | 12 | 1602 | 2064 | 45954567 | 45954091 | 1.410000e-153 | 553.0 |
2 | TraesCS3D01G090300 | chr3D | 87.528 | 449 | 31 | 11 | 2883 | 3306 | 45951945 | 45951497 | 2.410000e-136 | 496.0 |
3 | TraesCS3D01G090300 | chr3D | 93.375 | 317 | 13 | 4 | 2551 | 2859 | 45952240 | 45951924 | 2.450000e-126 | 462.0 |
4 | TraesCS3D01G090300 | chr3D | 91.667 | 252 | 16 | 2 | 994 | 1240 | 45954857 | 45954606 | 9.250000e-91 | 344.0 |
5 | TraesCS3D01G090300 | chr3D | 94.089 | 203 | 4 | 4 | 424 | 618 | 45955242 | 45955040 | 5.650000e-78 | 302.0 |
6 | TraesCS3D01G090300 | chr3D | 95.000 | 60 | 3 | 0 | 800 | 859 | 45954934 | 45954875 | 1.030000e-15 | 95.3 |
7 | TraesCS3D01G090300 | chr3B | 85.523 | 1119 | 71 | 34 | 1455 | 2512 | 71555049 | 71553961 | 0.000000e+00 | 1085.0 |
8 | TraesCS3D01G090300 | chr3B | 90.282 | 638 | 39 | 12 | 303 | 931 | 71556043 | 71555420 | 0.000000e+00 | 813.0 |
9 | TraesCS3D01G090300 | chr3B | 89.713 | 593 | 47 | 9 | 2789 | 3377 | 71531377 | 71530795 | 0.000000e+00 | 745.0 |
10 | TraesCS3D01G090300 | chr3B | 93.162 | 234 | 14 | 2 | 989 | 1221 | 71555306 | 71555074 | 3.330000e-90 | 342.0 |
11 | TraesCS3D01G090300 | chr3B | 90.496 | 242 | 23 | 0 | 2551 | 2792 | 71545567 | 71545326 | 1.560000e-83 | 320.0 |
12 | TraesCS3D01G090300 | chr3B | 100.000 | 36 | 0 | 0 | 2515 | 2550 | 71545623 | 71545588 | 2.240000e-07 | 67.6 |
13 | TraesCS3D01G090300 | chr3A | 83.171 | 1230 | 90 | 40 | 1347 | 2511 | 57481795 | 57482972 | 0.000000e+00 | 1016.0 |
14 | TraesCS3D01G090300 | chr3A | 86.871 | 815 | 63 | 22 | 2551 | 3349 | 57483881 | 57484667 | 0.000000e+00 | 872.0 |
15 | TraesCS3D01G090300 | chr3A | 80.602 | 1263 | 86 | 42 | 1347 | 2506 | 57717501 | 57716295 | 0.000000e+00 | 828.0 |
16 | TraesCS3D01G090300 | chr3A | 90.705 | 624 | 26 | 5 | 2 | 618 | 57480764 | 57481362 | 0.000000e+00 | 802.0 |
17 | TraesCS3D01G090300 | chr3A | 91.250 | 240 | 16 | 5 | 989 | 1224 | 57481551 | 57481789 | 4.330000e-84 | 322.0 |
18 | TraesCS3D01G090300 | chr3A | 91.845 | 233 | 16 | 3 | 994 | 1224 | 57717738 | 57717507 | 4.330000e-84 | 322.0 |
19 | TraesCS3D01G090300 | chr3A | 92.462 | 199 | 11 | 2 | 424 | 618 | 57718132 | 57717934 | 7.360000e-72 | 281.0 |
20 | TraesCS3D01G090300 | chr3A | 100.000 | 56 | 0 | 0 | 761 | 816 | 57481412 | 57481467 | 1.710000e-18 | 104.0 |
21 | TraesCS3D01G090300 | chr3A | 100.000 | 56 | 0 | 0 | 761 | 816 | 57717884 | 57717829 | 1.710000e-18 | 104.0 |
22 | TraesCS3D01G090300 | chr3A | 100.000 | 42 | 0 | 0 | 2511 | 2552 | 57483818 | 57483859 | 1.040000e-10 | 78.7 |
23 | TraesCS3D01G090300 | chr3A | 92.593 | 54 | 3 | 1 | 3415 | 3468 | 383643464 | 383643516 | 3.730000e-10 | 76.8 |
24 | TraesCS3D01G090300 | chr3A | 90.385 | 52 | 4 | 1 | 3417 | 3467 | 57484945 | 57484996 | 2.240000e-07 | 67.6 |
25 | TraesCS3D01G090300 | chr7B | 74.638 | 690 | 102 | 45 | 1762 | 2403 | 641680768 | 641681432 | 1.610000e-58 | 237.0 |
26 | TraesCS3D01G090300 | chr7B | 84.516 | 155 | 22 | 2 | 991 | 1144 | 641684807 | 641684960 | 6.020000e-33 | 152.0 |
27 | TraesCS3D01G090300 | chr2A | 80.569 | 211 | 34 | 4 | 1787 | 1997 | 715827445 | 715827242 | 4.650000e-34 | 156.0 |
28 | TraesCS3D01G090300 | chr2A | 77.447 | 235 | 38 | 10 | 1763 | 1997 | 101129077 | 101128858 | 3.650000e-25 | 126.0 |
29 | TraesCS3D01G090300 | chr4A | 80.095 | 211 | 35 | 4 | 1787 | 1997 | 196783957 | 196784160 | 2.160000e-32 | 150.0 |
30 | TraesCS3D01G090300 | chr5A | 78.151 | 238 | 34 | 12 | 1763 | 1997 | 146518526 | 146518304 | 6.060000e-28 | 135.0 |
31 | TraesCS3D01G090300 | chr1A | 79.474 | 190 | 32 | 4 | 1808 | 1997 | 525836407 | 525836589 | 1.010000e-25 | 128.0 |
32 | TraesCS3D01G090300 | chr1A | 81.250 | 80 | 12 | 3 | 185 | 262 | 491393672 | 491393594 | 1.040000e-05 | 62.1 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3D01G090300 | chr3D | 45921227 | 45924707 | 3480 | False | 6429.000000 | 6429 | 100.000000 | 1 | 3481 | 1 | chr3D.!!$F1 | 3480 |
1 | TraesCS3D01G090300 | chr3D | 45951497 | 45955242 | 3745 | True | 375.383333 | 553 | 91.643000 | 424 | 3306 | 6 | chr3D.!!$R1 | 2882 |
2 | TraesCS3D01G090300 | chr3B | 71553961 | 71556043 | 2082 | True | 746.666667 | 1085 | 89.655667 | 303 | 2512 | 3 | chr3B.!!$R3 | 2209 |
3 | TraesCS3D01G090300 | chr3B | 71530795 | 71531377 | 582 | True | 745.000000 | 745 | 89.713000 | 2789 | 3377 | 1 | chr3B.!!$R1 | 588 |
4 | TraesCS3D01G090300 | chr3A | 57480764 | 57484996 | 4232 | False | 466.042857 | 1016 | 91.768857 | 2 | 3467 | 7 | chr3A.!!$F2 | 3465 |
5 | TraesCS3D01G090300 | chr3A | 57716295 | 57718132 | 1837 | True | 383.750000 | 828 | 91.227250 | 424 | 2506 | 4 | chr3A.!!$R1 | 2082 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
976 | 1043 | 0.108424 | ACTGACTTGCTGCTCGATCC | 60.108 | 55.0 | 0.0 | 0.0 | 0.0 | 3.36 | F |
1050 | 1162 | 0.038618 | TCCAGAACGATGTGTCACGG | 60.039 | 55.0 | 0.0 | 0.0 | 0.0 | 4.94 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1989 | 2171 | 0.313043 | AGGACGTGTGTGTACCTTCG | 59.687 | 55.0 | 0.0 | 0.0 | 0.00 | 3.79 | R |
2714 | 5142 | 0.319040 | CACACCACTCCTCGTCTGTG | 60.319 | 60.0 | 0.0 | 0.0 | 33.67 | 3.66 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
60 | 61 | 0.466922 | AGCAGGTAGATGGCAATGGC | 60.467 | 55.000 | 0.00 | 0.00 | 40.13 | 4.40 |
140 | 141 | 9.280174 | TGGTAAGATTAAAACTTAGTGAACTGG | 57.720 | 33.333 | 5.96 | 0.00 | 31.75 | 4.00 |
149 | 150 | 8.528044 | AAAACTTAGTGAACTGGGTATTTCAA | 57.472 | 30.769 | 0.00 | 0.00 | 33.58 | 2.69 |
153 | 154 | 5.432885 | AGTGAACTGGGTATTTCAAAACG | 57.567 | 39.130 | 0.00 | 0.00 | 33.58 | 3.60 |
189 | 190 | 5.511363 | AGCAGTGTACTCCTAGTATTGTCT | 58.489 | 41.667 | 0.00 | 0.00 | 32.65 | 3.41 |
196 | 197 | 8.738106 | GTGTACTCCTAGTATTGTCTTGTACTT | 58.262 | 37.037 | 0.00 | 0.00 | 32.65 | 2.24 |
197 | 198 | 8.954350 | TGTACTCCTAGTATTGTCTTGTACTTC | 58.046 | 37.037 | 0.00 | 0.00 | 32.65 | 3.01 |
212 | 213 | 6.758593 | TTGTACTTCAAGTTGATCGTGTAC | 57.241 | 37.500 | 20.15 | 20.15 | 0.00 | 2.90 |
214 | 215 | 5.918576 | TGTACTTCAAGTTGATCGTGTACTG | 59.081 | 40.000 | 23.53 | 7.53 | 32.76 | 2.74 |
215 | 216 | 4.945246 | ACTTCAAGTTGATCGTGTACTGT | 58.055 | 39.130 | 6.36 | 0.00 | 0.00 | 3.55 |
245 | 246 | 2.404083 | CCCACGAGGCGCAAATAAT | 58.596 | 52.632 | 10.83 | 0.00 | 0.00 | 1.28 |
263 | 264 | 8.810427 | GCAAATAATACATCAACAATTCCACAG | 58.190 | 33.333 | 0.00 | 0.00 | 0.00 | 3.66 |
275 | 276 | 0.545309 | TTCCACAGTCTCCCCCTCTG | 60.545 | 60.000 | 0.00 | 0.00 | 35.60 | 3.35 |
286 | 287 | 2.637872 | CTCCCCCTCTGTTCTTTGTACA | 59.362 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
323 | 325 | 6.847956 | TTTGCTTTTCTTTGTGAATGGATG | 57.152 | 33.333 | 0.00 | 0.00 | 34.24 | 3.51 |
629 | 649 | 4.197498 | CGGACCGGTCGCCGTATT | 62.197 | 66.667 | 27.68 | 0.00 | 46.80 | 1.89 |
631 | 651 | 1.008079 | GGACCGGTCGCCGTATTAG | 60.008 | 63.158 | 27.68 | 4.32 | 46.80 | 1.73 |
636 | 656 | 0.933509 | CGGTCGCCGTATTAGCTGAC | 60.934 | 60.000 | 9.69 | 0.00 | 42.73 | 3.51 |
638 | 658 | 1.478137 | GTCGCCGTATTAGCTGACTG | 58.522 | 55.000 | 0.00 | 0.00 | 33.77 | 3.51 |
673 | 695 | 0.959553 | AGTCACACGGTACACTGGAG | 59.040 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
678 | 700 | 2.284405 | CGGTACACTGGAGGGGGT | 60.284 | 66.667 | 0.00 | 0.00 | 0.00 | 4.95 |
694 | 716 | 4.933064 | GTCGGGATCGCTGCCTCG | 62.933 | 72.222 | 8.28 | 0.00 | 36.13 | 4.63 |
705 | 727 | 3.889134 | CTGCCTCGTGGAAGCAGCA | 62.889 | 63.158 | 7.92 | 0.00 | 46.60 | 4.41 |
710 | 732 | 1.888436 | CTCGTGGAAGCAGCAGGGTA | 61.888 | 60.000 | 0.00 | 0.00 | 0.00 | 3.69 |
714 | 736 | 0.835971 | TGGAAGCAGCAGGGTAGTCA | 60.836 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
715 | 737 | 0.324943 | GGAAGCAGCAGGGTAGTCAA | 59.675 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
738 | 760 | 1.729838 | GCTATAGTCGCCGCCGAAG | 60.730 | 63.158 | 0.84 | 0.00 | 46.34 | 3.79 |
752 | 774 | 3.996825 | CGAAGCTTCCCGGAATTTG | 57.003 | 52.632 | 20.62 | 0.00 | 0.00 | 2.32 |
753 | 775 | 0.179163 | CGAAGCTTCCCGGAATTTGC | 60.179 | 55.000 | 20.62 | 0.84 | 0.00 | 3.68 |
754 | 776 | 0.887933 | GAAGCTTCCCGGAATTTGCA | 59.112 | 50.000 | 15.97 | 0.00 | 0.00 | 4.08 |
755 | 777 | 0.603065 | AAGCTTCCCGGAATTTGCAC | 59.397 | 50.000 | 0.73 | 0.00 | 0.00 | 4.57 |
756 | 778 | 1.215382 | GCTTCCCGGAATTTGCACC | 59.785 | 57.895 | 0.73 | 0.00 | 0.00 | 5.01 |
758 | 780 | 2.542211 | CTTCCCGGAATTTGCACCGC | 62.542 | 60.000 | 0.73 | 0.00 | 46.59 | 5.68 |
759 | 781 | 3.369400 | CCCGGAATTTGCACCGCA | 61.369 | 61.111 | 0.73 | 0.00 | 46.59 | 5.69 |
859 | 910 | 1.956477 | CAGTTGTTACAGCCTTTGCCT | 59.044 | 47.619 | 0.00 | 0.00 | 38.69 | 4.75 |
907 | 958 | 1.042229 | TACGTGCCACACAAGGTACT | 58.958 | 50.000 | 0.00 | 0.00 | 41.49 | 2.73 |
931 | 982 | 2.697751 | AGAATGCTTCTCCTGCTACGAT | 59.302 | 45.455 | 0.00 | 0.00 | 34.07 | 3.73 |
932 | 983 | 2.810439 | ATGCTTCTCCTGCTACGATC | 57.190 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
933 | 984 | 0.382158 | TGCTTCTCCTGCTACGATCG | 59.618 | 55.000 | 14.88 | 14.88 | 0.00 | 3.69 |
934 | 985 | 0.663688 | GCTTCTCCTGCTACGATCGA | 59.336 | 55.000 | 24.34 | 4.52 | 0.00 | 3.59 |
935 | 986 | 1.334599 | GCTTCTCCTGCTACGATCGAG | 60.335 | 57.143 | 24.34 | 15.39 | 0.00 | 4.04 |
937 | 988 | 1.167155 | TCTCCTGCTACGATCGAGCC | 61.167 | 60.000 | 24.34 | 9.29 | 39.30 | 4.70 |
939 | 990 | 2.336809 | CTGCTACGATCGAGCCCC | 59.663 | 66.667 | 24.34 | 5.65 | 39.30 | 5.80 |
942 | 993 | 1.327690 | TGCTACGATCGAGCCCCTTT | 61.328 | 55.000 | 24.34 | 0.00 | 39.30 | 3.11 |
944 | 995 | 1.571919 | CTACGATCGAGCCCCTTTTG | 58.428 | 55.000 | 24.34 | 0.00 | 0.00 | 2.44 |
945 | 996 | 0.461339 | TACGATCGAGCCCCTTTTGC | 60.461 | 55.000 | 24.34 | 0.00 | 0.00 | 3.68 |
946 | 997 | 2.472909 | CGATCGAGCCCCTTTTGCC | 61.473 | 63.158 | 10.26 | 0.00 | 0.00 | 4.52 |
947 | 998 | 2.438434 | ATCGAGCCCCTTTTGCCG | 60.438 | 61.111 | 0.00 | 0.00 | 0.00 | 5.69 |
948 | 999 | 3.995506 | ATCGAGCCCCTTTTGCCGG | 62.996 | 63.158 | 0.00 | 0.00 | 0.00 | 6.13 |
955 | 1006 | 4.341502 | CCTTTTGCCGGCACCACG | 62.342 | 66.667 | 32.95 | 16.45 | 0.00 | 4.94 |
976 | 1043 | 0.108424 | ACTGACTTGCTGCTCGATCC | 60.108 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
1005 | 1117 | 2.402564 | TCTAGCCAAGAGAAGATGGGG | 58.597 | 52.381 | 0.00 | 0.00 | 37.19 | 4.96 |
1028 | 1140 | 1.486211 | GGGAGGACGGAGATGAAGAA | 58.514 | 55.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1035 | 1147 | 3.243704 | GGACGGAGATGAAGAAGATCCAG | 60.244 | 52.174 | 0.00 | 0.00 | 0.00 | 3.86 |
1041 | 1153 | 5.221422 | GGAGATGAAGAAGATCCAGAACGAT | 60.221 | 44.000 | 0.00 | 0.00 | 0.00 | 3.73 |
1047 | 1159 | 3.511540 | AGAAGATCCAGAACGATGTGTCA | 59.488 | 43.478 | 0.00 | 0.00 | 0.00 | 3.58 |
1050 | 1162 | 0.038618 | TCCAGAACGATGTGTCACGG | 60.039 | 55.000 | 0.00 | 0.00 | 0.00 | 4.94 |
1097 | 1209 | 2.359107 | CCTGCTGAAGAAGGCGCA | 60.359 | 61.111 | 10.83 | 0.00 | 33.21 | 6.09 |
1185 | 1297 | 2.678934 | TTCGACTACTGCGCCCCT | 60.679 | 61.111 | 4.18 | 0.00 | 0.00 | 4.79 |
1199 | 1311 | 1.376812 | CCCCTAACACAAGGTCCGC | 60.377 | 63.158 | 0.00 | 0.00 | 34.56 | 5.54 |
1223 | 1335 | 3.751246 | CCCGTTCCGTCACGCCTA | 61.751 | 66.667 | 0.00 | 0.00 | 38.93 | 3.93 |
1235 | 1352 | 3.730662 | CGTCACGCCTAATTTGGATTTGG | 60.731 | 47.826 | 10.34 | 0.00 | 40.00 | 3.28 |
1240 | 1357 | 5.124776 | CACGCCTAATTTGGATTTGGTTCTA | 59.875 | 40.000 | 10.34 | 0.00 | 39.45 | 2.10 |
1241 | 1358 | 5.357032 | ACGCCTAATTTGGATTTGGTTCTAG | 59.643 | 40.000 | 10.34 | 0.00 | 39.45 | 2.43 |
1242 | 1359 | 5.592054 | GCCTAATTTGGATTTGGTTCTAGC | 58.408 | 41.667 | 10.34 | 0.00 | 39.45 | 3.42 |
1245 | 1362 | 7.255277 | GCCTAATTTGGATTTGGTTCTAGCTAG | 60.255 | 40.741 | 15.01 | 15.01 | 39.45 | 3.42 |
1246 | 1363 | 6.456795 | AATTTGGATTTGGTTCTAGCTAGC | 57.543 | 37.500 | 16.35 | 6.62 | 0.00 | 3.42 |
1248 | 1365 | 4.844349 | TGGATTTGGTTCTAGCTAGCTT | 57.156 | 40.909 | 24.88 | 7.25 | 0.00 | 3.74 |
1249 | 1366 | 4.517285 | TGGATTTGGTTCTAGCTAGCTTG | 58.483 | 43.478 | 24.88 | 21.44 | 0.00 | 4.01 |
1250 | 1367 | 4.019321 | TGGATTTGGTTCTAGCTAGCTTGT | 60.019 | 41.667 | 24.88 | 2.48 | 0.00 | 3.16 |
1251 | 1368 | 4.333926 | GGATTTGGTTCTAGCTAGCTTGTG | 59.666 | 45.833 | 24.88 | 13.61 | 0.00 | 3.33 |
1252 | 1369 | 4.617253 | TTTGGTTCTAGCTAGCTTGTGA | 57.383 | 40.909 | 24.88 | 15.72 | 0.00 | 3.58 |
1253 | 1370 | 3.876274 | TGGTTCTAGCTAGCTTGTGAG | 57.124 | 47.619 | 24.88 | 14.33 | 0.00 | 3.51 |
1254 | 1371 | 2.497675 | TGGTTCTAGCTAGCTTGTGAGG | 59.502 | 50.000 | 24.88 | 6.84 | 0.00 | 3.86 |
1255 | 1372 | 2.498078 | GGTTCTAGCTAGCTTGTGAGGT | 59.502 | 50.000 | 24.88 | 0.00 | 37.40 | 3.85 |
1256 | 1373 | 3.516615 | GTTCTAGCTAGCTTGTGAGGTG | 58.483 | 50.000 | 24.88 | 3.77 | 34.88 | 4.00 |
1258 | 1375 | 0.537188 | TAGCTAGCTTGTGAGGTGCC | 59.463 | 55.000 | 24.88 | 0.00 | 34.88 | 5.01 |
1259 | 1376 | 1.197430 | AGCTAGCTTGTGAGGTGCCT | 61.197 | 55.000 | 12.68 | 0.00 | 34.88 | 4.75 |
1260 | 1377 | 0.742635 | GCTAGCTTGTGAGGTGCCTC | 60.743 | 60.000 | 7.70 | 11.13 | 43.01 | 4.70 |
1261 | 1378 | 0.901124 | CTAGCTTGTGAGGTGCCTCT | 59.099 | 55.000 | 17.96 | 0.89 | 43.12 | 3.69 |
1262 | 1379 | 0.898320 | TAGCTTGTGAGGTGCCTCTC | 59.102 | 55.000 | 17.96 | 14.89 | 43.12 | 3.20 |
1263 | 1380 | 0.835543 | AGCTTGTGAGGTGCCTCTCT | 60.836 | 55.000 | 17.96 | 5.96 | 43.12 | 3.10 |
1264 | 1381 | 0.673022 | GCTTGTGAGGTGCCTCTCTG | 60.673 | 60.000 | 17.96 | 12.36 | 43.12 | 3.35 |
1265 | 1382 | 0.673022 | CTTGTGAGGTGCCTCTCTGC | 60.673 | 60.000 | 17.96 | 7.49 | 43.12 | 4.26 |
1266 | 1383 | 1.123861 | TTGTGAGGTGCCTCTCTGCT | 61.124 | 55.000 | 17.96 | 0.00 | 43.12 | 4.24 |
1267 | 1384 | 0.251787 | TGTGAGGTGCCTCTCTGCTA | 60.252 | 55.000 | 17.96 | 0.00 | 43.12 | 3.49 |
1268 | 1385 | 0.174617 | GTGAGGTGCCTCTCTGCTAC | 59.825 | 60.000 | 17.96 | 4.43 | 43.12 | 3.58 |
1269 | 1386 | 0.972983 | TGAGGTGCCTCTCTGCTACC | 60.973 | 60.000 | 17.96 | 0.00 | 43.12 | 3.18 |
1270 | 1387 | 0.686112 | GAGGTGCCTCTCTGCTACCT | 60.686 | 60.000 | 10.80 | 0.00 | 41.95 | 3.08 |
1271 | 1388 | 0.252467 | AGGTGCCTCTCTGCTACCTT | 60.252 | 55.000 | 0.00 | 0.00 | 38.66 | 3.50 |
1272 | 1389 | 0.107945 | GGTGCCTCTCTGCTACCTTG | 60.108 | 60.000 | 0.00 | 0.00 | 32.87 | 3.61 |
1273 | 1390 | 0.610687 | GTGCCTCTCTGCTACCTTGT | 59.389 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1274 | 1391 | 1.002544 | GTGCCTCTCTGCTACCTTGTT | 59.997 | 52.381 | 0.00 | 0.00 | 0.00 | 2.83 |
1275 | 1392 | 1.002430 | TGCCTCTCTGCTACCTTGTTG | 59.998 | 52.381 | 0.00 | 0.00 | 0.00 | 3.33 |
1276 | 1393 | 1.276421 | GCCTCTCTGCTACCTTGTTGA | 59.724 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
1277 | 1394 | 2.933056 | GCCTCTCTGCTACCTTGTTGAC | 60.933 | 54.545 | 0.00 | 0.00 | 0.00 | 3.18 |
1278 | 1395 | 2.354203 | CCTCTCTGCTACCTTGTTGACC | 60.354 | 54.545 | 0.00 | 0.00 | 0.00 | 4.02 |
1279 | 1396 | 2.300152 | CTCTCTGCTACCTTGTTGACCA | 59.700 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
1280 | 1397 | 2.703536 | TCTCTGCTACCTTGTTGACCAA | 59.296 | 45.455 | 0.00 | 0.00 | 0.00 | 3.67 |
1281 | 1398 | 2.808543 | CTCTGCTACCTTGTTGACCAAC | 59.191 | 50.000 | 5.97 | 5.97 | 41.50 | 3.77 |
1282 | 1399 | 1.880027 | CTGCTACCTTGTTGACCAACC | 59.120 | 52.381 | 10.04 | 0.00 | 40.46 | 3.77 |
1283 | 1400 | 1.493022 | TGCTACCTTGTTGACCAACCT | 59.507 | 47.619 | 10.04 | 0.00 | 40.46 | 3.50 |
1284 | 1401 | 2.152016 | GCTACCTTGTTGACCAACCTC | 58.848 | 52.381 | 10.04 | 0.00 | 40.46 | 3.85 |
1285 | 1402 | 2.779506 | CTACCTTGTTGACCAACCTCC | 58.220 | 52.381 | 10.04 | 0.00 | 40.46 | 4.30 |
1286 | 1403 | 0.185175 | ACCTTGTTGACCAACCTCCC | 59.815 | 55.000 | 10.04 | 0.00 | 40.46 | 4.30 |
1287 | 1404 | 0.184933 | CCTTGTTGACCAACCTCCCA | 59.815 | 55.000 | 10.04 | 0.00 | 40.46 | 4.37 |
1288 | 1405 | 1.410932 | CCTTGTTGACCAACCTCCCAA | 60.411 | 52.381 | 10.04 | 0.00 | 40.46 | 4.12 |
1289 | 1406 | 2.597455 | CTTGTTGACCAACCTCCCAAT | 58.403 | 47.619 | 10.04 | 0.00 | 40.46 | 3.16 |
1290 | 1407 | 2.765689 | TGTTGACCAACCTCCCAATT | 57.234 | 45.000 | 10.04 | 0.00 | 40.46 | 2.32 |
1291 | 1408 | 2.315176 | TGTTGACCAACCTCCCAATTG | 58.685 | 47.619 | 10.04 | 0.00 | 40.46 | 2.32 |
1292 | 1409 | 2.091610 | TGTTGACCAACCTCCCAATTGA | 60.092 | 45.455 | 7.12 | 0.00 | 40.46 | 2.57 |
1293 | 1410 | 3.165071 | GTTGACCAACCTCCCAATTGAT | 58.835 | 45.455 | 7.12 | 0.00 | 35.36 | 2.57 |
1294 | 1411 | 3.541242 | TGACCAACCTCCCAATTGATT | 57.459 | 42.857 | 7.12 | 0.00 | 0.00 | 2.57 |
1295 | 1412 | 3.430453 | TGACCAACCTCCCAATTGATTC | 58.570 | 45.455 | 7.12 | 0.00 | 0.00 | 2.52 |
1296 | 1413 | 3.075882 | TGACCAACCTCCCAATTGATTCT | 59.924 | 43.478 | 7.12 | 0.00 | 0.00 | 2.40 |
1297 | 1414 | 4.089361 | GACCAACCTCCCAATTGATTCTT | 58.911 | 43.478 | 7.12 | 0.00 | 0.00 | 2.52 |
1298 | 1415 | 4.089361 | ACCAACCTCCCAATTGATTCTTC | 58.911 | 43.478 | 7.12 | 0.00 | 0.00 | 2.87 |
1299 | 1416 | 4.202716 | ACCAACCTCCCAATTGATTCTTCT | 60.203 | 41.667 | 7.12 | 0.00 | 0.00 | 2.85 |
1300 | 1417 | 4.159135 | CCAACCTCCCAATTGATTCTTCTG | 59.841 | 45.833 | 7.12 | 0.00 | 0.00 | 3.02 |
1301 | 1418 | 4.664688 | ACCTCCCAATTGATTCTTCTGT | 57.335 | 40.909 | 7.12 | 0.00 | 0.00 | 3.41 |
1302 | 1419 | 5.003096 | ACCTCCCAATTGATTCTTCTGTT | 57.997 | 39.130 | 7.12 | 0.00 | 0.00 | 3.16 |
1303 | 1420 | 5.397360 | ACCTCCCAATTGATTCTTCTGTTT | 58.603 | 37.500 | 7.12 | 0.00 | 0.00 | 2.83 |
1304 | 1421 | 6.552008 | ACCTCCCAATTGATTCTTCTGTTTA | 58.448 | 36.000 | 7.12 | 0.00 | 0.00 | 2.01 |
1305 | 1422 | 7.184862 | ACCTCCCAATTGATTCTTCTGTTTAT | 58.815 | 34.615 | 7.12 | 0.00 | 0.00 | 1.40 |
1306 | 1423 | 8.336235 | ACCTCCCAATTGATTCTTCTGTTTATA | 58.664 | 33.333 | 7.12 | 0.00 | 0.00 | 0.98 |
1307 | 1424 | 8.844244 | CCTCCCAATTGATTCTTCTGTTTATAG | 58.156 | 37.037 | 7.12 | 0.00 | 0.00 | 1.31 |
1308 | 1425 | 9.401058 | CTCCCAATTGATTCTTCTGTTTATAGT | 57.599 | 33.333 | 7.12 | 0.00 | 0.00 | 2.12 |
1309 | 1426 | 9.177608 | TCCCAATTGATTCTTCTGTTTATAGTG | 57.822 | 33.333 | 7.12 | 0.00 | 0.00 | 2.74 |
1310 | 1427 | 7.917505 | CCCAATTGATTCTTCTGTTTATAGTGC | 59.082 | 37.037 | 7.12 | 0.00 | 0.00 | 4.40 |
1311 | 1428 | 8.461222 | CCAATTGATTCTTCTGTTTATAGTGCA | 58.539 | 33.333 | 7.12 | 0.00 | 0.00 | 4.57 |
1312 | 1429 | 9.844790 | CAATTGATTCTTCTGTTTATAGTGCAA | 57.155 | 29.630 | 0.00 | 0.00 | 0.00 | 4.08 |
1314 | 1431 | 8.621532 | TTGATTCTTCTGTTTATAGTGCAAGT | 57.378 | 30.769 | 0.00 | 0.00 | 0.00 | 3.16 |
1315 | 1432 | 8.032952 | TGATTCTTCTGTTTATAGTGCAAGTG | 57.967 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
1316 | 1433 | 7.661437 | TGATTCTTCTGTTTATAGTGCAAGTGT | 59.339 | 33.333 | 0.00 | 0.00 | 0.00 | 3.55 |
1317 | 1434 | 6.785488 | TCTTCTGTTTATAGTGCAAGTGTG | 57.215 | 37.500 | 0.00 | 0.00 | 0.00 | 3.82 |
1318 | 1435 | 5.700832 | TCTTCTGTTTATAGTGCAAGTGTGG | 59.299 | 40.000 | 0.00 | 0.00 | 0.00 | 4.17 |
1319 | 1436 | 5.222079 | TCTGTTTATAGTGCAAGTGTGGA | 57.778 | 39.130 | 0.00 | 0.00 | 0.00 | 4.02 |
1320 | 1437 | 5.804639 | TCTGTTTATAGTGCAAGTGTGGAT | 58.195 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
1321 | 1438 | 5.643348 | TCTGTTTATAGTGCAAGTGTGGATG | 59.357 | 40.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1322 | 1439 | 5.312895 | TGTTTATAGTGCAAGTGTGGATGT | 58.687 | 37.500 | 0.00 | 0.00 | 0.00 | 3.06 |
1323 | 1440 | 5.181056 | TGTTTATAGTGCAAGTGTGGATGTG | 59.819 | 40.000 | 0.00 | 0.00 | 0.00 | 3.21 |
1324 | 1441 | 2.928801 | TAGTGCAAGTGTGGATGTGT | 57.071 | 45.000 | 0.00 | 0.00 | 0.00 | 3.72 |
1325 | 1442 | 1.311859 | AGTGCAAGTGTGGATGTGTG | 58.688 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
1326 | 1443 | 1.024271 | GTGCAAGTGTGGATGTGTGT | 58.976 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
1327 | 1444 | 1.405105 | GTGCAAGTGTGGATGTGTGTT | 59.595 | 47.619 | 0.00 | 0.00 | 0.00 | 3.32 |
1328 | 1445 | 1.404748 | TGCAAGTGTGGATGTGTGTTG | 59.595 | 47.619 | 0.00 | 0.00 | 0.00 | 3.33 |
1329 | 1446 | 1.405105 | GCAAGTGTGGATGTGTGTTGT | 59.595 | 47.619 | 0.00 | 0.00 | 0.00 | 3.32 |
1330 | 1447 | 2.795681 | GCAAGTGTGGATGTGTGTTGTG | 60.796 | 50.000 | 0.00 | 0.00 | 0.00 | 3.33 |
1331 | 1448 | 2.682352 | CAAGTGTGGATGTGTGTTGTGA | 59.318 | 45.455 | 0.00 | 0.00 | 0.00 | 3.58 |
1332 | 1449 | 3.213206 | AGTGTGGATGTGTGTTGTGAT | 57.787 | 42.857 | 0.00 | 0.00 | 0.00 | 3.06 |
1333 | 1450 | 3.554934 | AGTGTGGATGTGTGTTGTGATT | 58.445 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
1334 | 1451 | 3.565482 | AGTGTGGATGTGTGTTGTGATTC | 59.435 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
1335 | 1452 | 3.314913 | GTGTGGATGTGTGTTGTGATTCA | 59.685 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
1336 | 1453 | 4.022935 | GTGTGGATGTGTGTTGTGATTCAT | 60.023 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
1337 | 1454 | 4.583907 | TGTGGATGTGTGTTGTGATTCATT | 59.416 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
1338 | 1455 | 5.156355 | GTGGATGTGTGTTGTGATTCATTC | 58.844 | 41.667 | 0.00 | 0.00 | 0.00 | 2.67 |
1339 | 1456 | 4.218200 | TGGATGTGTGTTGTGATTCATTCC | 59.782 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
1340 | 1457 | 3.894782 | TGTGTGTTGTGATTCATTCCG | 57.105 | 42.857 | 0.00 | 0.00 | 0.00 | 4.30 |
1341 | 1458 | 2.551887 | TGTGTGTTGTGATTCATTCCGG | 59.448 | 45.455 | 0.00 | 0.00 | 0.00 | 5.14 |
1342 | 1459 | 2.552315 | GTGTGTTGTGATTCATTCCGGT | 59.448 | 45.455 | 0.00 | 0.00 | 0.00 | 5.28 |
1343 | 1460 | 2.811431 | TGTGTTGTGATTCATTCCGGTC | 59.189 | 45.455 | 0.00 | 0.00 | 0.00 | 4.79 |
1344 | 1461 | 2.161609 | GTGTTGTGATTCATTCCGGTCC | 59.838 | 50.000 | 0.00 | 0.00 | 0.00 | 4.46 |
1345 | 1462 | 1.396996 | GTTGTGATTCATTCCGGTCCG | 59.603 | 52.381 | 3.60 | 3.60 | 0.00 | 4.79 |
1357 | 1474 | 2.664436 | CGGTCCGGACAAGCGAAAC | 61.664 | 63.158 | 34.40 | 14.40 | 39.86 | 2.78 |
1379 | 1496 | 6.839124 | ACTCTGCATTATGGTTTTGATGAA | 57.161 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
1383 | 1500 | 8.291191 | TCTGCATTATGGTTTTGATGAACATA | 57.709 | 30.769 | 0.00 | 0.00 | 0.00 | 2.29 |
1384 | 1501 | 8.916062 | TCTGCATTATGGTTTTGATGAACATAT | 58.084 | 29.630 | 0.00 | 0.00 | 0.00 | 1.78 |
1409 | 1526 | 2.158900 | CCGATTACTGAACCTGCATCCT | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 3.24 |
1420 | 1537 | 2.486966 | GCATCCTTTGCGAGTGCC | 59.513 | 61.111 | 0.00 | 0.00 | 42.54 | 5.01 |
1421 | 1538 | 2.334946 | GCATCCTTTGCGAGTGCCA | 61.335 | 57.895 | 0.00 | 0.00 | 42.54 | 4.92 |
1436 | 1553 | 4.413928 | CCAACCGGCCATCTTTGA | 57.586 | 55.556 | 0.00 | 0.00 | 0.00 | 2.69 |
1449 | 1566 | 3.181471 | CCATCTTTGACATCGTCCTAGCT | 60.181 | 47.826 | 0.00 | 0.00 | 0.00 | 3.32 |
1451 | 1568 | 4.902443 | TCTTTGACATCGTCCTAGCTAG | 57.098 | 45.455 | 14.20 | 14.20 | 0.00 | 3.42 |
1452 | 1569 | 3.632604 | TCTTTGACATCGTCCTAGCTAGG | 59.367 | 47.826 | 30.94 | 30.94 | 45.02 | 3.02 |
1453 | 1570 | 1.319541 | TGACATCGTCCTAGCTAGGC | 58.680 | 55.000 | 31.76 | 24.52 | 43.31 | 3.93 |
1454 | 1571 | 1.133761 | TGACATCGTCCTAGCTAGGCT | 60.134 | 52.381 | 31.76 | 14.94 | 43.31 | 4.58 |
1455 | 1572 | 1.538075 | GACATCGTCCTAGCTAGGCTC | 59.462 | 57.143 | 31.76 | 24.25 | 43.31 | 4.70 |
1456 | 1573 | 0.885196 | CATCGTCCTAGCTAGGCTCC | 59.115 | 60.000 | 31.76 | 20.62 | 43.31 | 4.70 |
1457 | 1574 | 0.774908 | ATCGTCCTAGCTAGGCTCCT | 59.225 | 55.000 | 31.76 | 15.27 | 43.31 | 3.69 |
1458 | 1575 | 1.432056 | TCGTCCTAGCTAGGCTCCTA | 58.568 | 55.000 | 31.76 | 14.04 | 43.31 | 2.94 |
1459 | 1576 | 1.348366 | TCGTCCTAGCTAGGCTCCTAG | 59.652 | 57.143 | 31.76 | 18.46 | 46.41 | 3.02 |
1496 | 1613 | 2.198406 | CAATTGGCATGCTCGAATTGG | 58.802 | 47.619 | 26.12 | 16.01 | 33.85 | 3.16 |
1515 | 1636 | 6.976934 | ATTGGGTTTTGTGATCAAGTTAGT | 57.023 | 33.333 | 0.00 | 0.00 | 34.88 | 2.24 |
1529 | 1650 | 7.609146 | TGATCAAGTTAGTCAGATGATGCTTTT | 59.391 | 33.333 | 0.00 | 0.00 | 31.24 | 2.27 |
1545 | 1666 | 7.478322 | TGATGCTTTTGAATTTAGCTCTGATC | 58.522 | 34.615 | 0.00 | 0.00 | 35.93 | 2.92 |
1589 | 1710 | 8.599055 | TCAGATGCTTATGTTCATATTCAGTC | 57.401 | 34.615 | 0.00 | 0.00 | 0.00 | 3.51 |
1620 | 1757 | 8.635765 | ACATGTTTATACCTGACTTGTCATTT | 57.364 | 30.769 | 3.79 | 0.00 | 29.08 | 2.32 |
1726 | 1872 | 8.578448 | TGATGATCATCAGGTCAATAAACAAA | 57.422 | 30.769 | 30.27 | 5.80 | 42.42 | 2.83 |
1727 | 1873 | 8.680001 | TGATGATCATCAGGTCAATAAACAAAG | 58.320 | 33.333 | 30.27 | 0.00 | 42.42 | 2.77 |
1728 | 1874 | 8.812513 | ATGATCATCAGGTCAATAAACAAAGA | 57.187 | 30.769 | 1.18 | 0.00 | 0.00 | 2.52 |
1729 | 1875 | 8.272545 | TGATCATCAGGTCAATAAACAAAGAG | 57.727 | 34.615 | 0.00 | 0.00 | 0.00 | 2.85 |
1754 | 1900 | 4.937620 | ACACATCCAGTCATGTACAACATC | 59.062 | 41.667 | 0.00 | 0.00 | 36.53 | 3.06 |
1767 | 1913 | 6.599356 | TGTACAACATCCAGTACATACACT | 57.401 | 37.500 | 0.00 | 0.00 | 43.92 | 3.55 |
1799 | 1981 | 1.470979 | GCATGCTTGCCTTCTGATTGG | 60.471 | 52.381 | 11.37 | 0.00 | 43.38 | 3.16 |
1833 | 2015 | 2.633657 | CACACAGCAGCAACCGTC | 59.366 | 61.111 | 0.00 | 0.00 | 0.00 | 4.79 |
1865 | 2047 | 4.463879 | CAGGGCTGAGGCGTGAGG | 62.464 | 72.222 | 22.04 | 0.00 | 44.68 | 3.86 |
1907 | 2089 | 1.874345 | GACGAGGCAGACCGGAGAAA | 61.874 | 60.000 | 9.46 | 0.00 | 42.76 | 2.52 |
1913 | 2095 | 0.250338 | GCAGACCGGAGAAAACCTGT | 60.250 | 55.000 | 9.46 | 0.00 | 0.00 | 4.00 |
1919 | 2101 | 1.003118 | CCGGAGAAAACCTGTCATCCA | 59.997 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
1921 | 2103 | 2.289694 | CGGAGAAAACCTGTCATCCACT | 60.290 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1989 | 2171 | 1.534163 | GCTGGGTAAAGTCCGTGAAAC | 59.466 | 52.381 | 0.00 | 0.00 | 0.00 | 2.78 |
2003 | 2185 | 3.580794 | GTGAAACGAAGGTACACACAC | 57.419 | 47.619 | 0.00 | 0.00 | 35.28 | 3.82 |
2004 | 2186 | 2.034339 | GTGAAACGAAGGTACACACACG | 60.034 | 50.000 | 0.00 | 0.00 | 35.28 | 4.49 |
2018 | 2206 | 3.705638 | CACGTCCTGCACTGCACG | 61.706 | 66.667 | 10.13 | 10.13 | 33.79 | 5.34 |
2064 | 2257 | 3.313526 | GTGTTTGAGTGAACTGCATGACT | 59.686 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
2074 | 2267 | 3.660501 | ACTGCATGACTTTCTCGTGTA | 57.339 | 42.857 | 0.00 | 0.00 | 38.10 | 2.90 |
2079 | 2294 | 3.679980 | GCATGACTTTCTCGTGTATGTGT | 59.320 | 43.478 | 0.00 | 0.00 | 38.10 | 3.72 |
2088 | 2303 | 4.077108 | TCTCGTGTATGTGTAGGACAAGT | 58.923 | 43.478 | 0.00 | 0.00 | 38.36 | 3.16 |
2115 | 2330 | 1.503542 | CAGCAGTTGGGCGAATCAC | 59.496 | 57.895 | 0.00 | 0.00 | 39.27 | 3.06 |
2201 | 2420 | 8.791327 | AAGCAATTTTTCATCCGGAATTTAAT | 57.209 | 26.923 | 9.01 | 2.18 | 34.91 | 1.40 |
2280 | 2499 | 1.714899 | CCTTCGCCGCCTGGTAATTG | 61.715 | 60.000 | 0.00 | 0.00 | 37.67 | 2.32 |
2281 | 2500 | 1.003112 | TTCGCCGCCTGGTAATTGT | 60.003 | 52.632 | 0.00 | 0.00 | 37.67 | 2.71 |
2282 | 2501 | 1.302383 | TTCGCCGCCTGGTAATTGTG | 61.302 | 55.000 | 0.00 | 0.00 | 37.67 | 3.33 |
2283 | 2502 | 1.743623 | CGCCGCCTGGTAATTGTGA | 60.744 | 57.895 | 0.00 | 0.00 | 37.67 | 3.58 |
2284 | 2503 | 1.302383 | CGCCGCCTGGTAATTGTGAA | 61.302 | 55.000 | 0.00 | 0.00 | 37.67 | 3.18 |
2285 | 2504 | 1.102978 | GCCGCCTGGTAATTGTGAAT | 58.897 | 50.000 | 0.00 | 0.00 | 37.67 | 2.57 |
2286 | 2505 | 1.202290 | GCCGCCTGGTAATTGTGAATG | 60.202 | 52.381 | 0.00 | 0.00 | 37.67 | 2.67 |
2287 | 2506 | 2.364632 | CCGCCTGGTAATTGTGAATGA | 58.635 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
2317 | 2542 | 1.153208 | GCCTGCTGAGCTGCTATGT | 60.153 | 57.895 | 5.83 | 0.00 | 0.00 | 2.29 |
2574 | 4987 | 3.804036 | TGGATCGATCACGCCTTATTTT | 58.196 | 40.909 | 25.93 | 0.00 | 39.58 | 1.82 |
2584 | 4997 | 3.127030 | CACGCCTTATTTTCAGGAAGTCC | 59.873 | 47.826 | 0.00 | 0.00 | 32.41 | 3.85 |
2602 | 5018 | 7.824779 | AGGAAGTCCTTTGTGATAGTTGATAAC | 59.175 | 37.037 | 0.00 | 0.00 | 46.09 | 1.89 |
2625 | 5041 | 0.246910 | GGGACGAGACTTGAGGAACC | 59.753 | 60.000 | 0.00 | 0.00 | 0.00 | 3.62 |
2792 | 5225 | 0.813210 | GCATGGCCTTCTCTTCCTCG | 60.813 | 60.000 | 3.32 | 0.00 | 0.00 | 4.63 |
2868 | 5309 | 2.759795 | GCTGTTCCTTCAGGGGCT | 59.240 | 61.111 | 0.00 | 0.00 | 36.12 | 5.19 |
2891 | 5332 | 2.821366 | CCACCAGTCGCCTCATGC | 60.821 | 66.667 | 0.00 | 0.00 | 0.00 | 4.06 |
2893 | 5334 | 4.101448 | ACCAGTCGCCTCATGCCC | 62.101 | 66.667 | 0.00 | 0.00 | 36.24 | 5.36 |
3002 | 5443 | 0.725686 | CCTTGCAAGCTGACTCATCG | 59.274 | 55.000 | 21.43 | 0.00 | 0.00 | 3.84 |
3235 | 5699 | 1.090052 | GCCCCACTCTTCGATTTCCG | 61.090 | 60.000 | 0.00 | 0.00 | 40.25 | 4.30 |
3279 | 5743 | 1.359117 | CGCCTCGCCTCGATTCTAA | 59.641 | 57.895 | 0.00 | 0.00 | 34.61 | 2.10 |
3307 | 5771 | 0.524862 | GGACCTTCGCTCGTGTCTAA | 59.475 | 55.000 | 0.00 | 0.00 | 0.00 | 2.10 |
3308 | 5772 | 1.467713 | GGACCTTCGCTCGTGTCTAAG | 60.468 | 57.143 | 0.00 | 0.00 | 0.00 | 2.18 |
3309 | 5773 | 1.199558 | GACCTTCGCTCGTGTCTAAGT | 59.800 | 52.381 | 0.00 | 0.00 | 0.00 | 2.24 |
3310 | 5774 | 1.612463 | ACCTTCGCTCGTGTCTAAGTT | 59.388 | 47.619 | 0.00 | 0.00 | 0.00 | 2.66 |
3311 | 5775 | 2.035576 | ACCTTCGCTCGTGTCTAAGTTT | 59.964 | 45.455 | 0.00 | 0.00 | 0.00 | 2.66 |
3315 | 5779 | 4.227512 | TCGCTCGTGTCTAAGTTTTGTA | 57.772 | 40.909 | 0.00 | 0.00 | 0.00 | 2.41 |
3350 | 5820 | 0.884704 | GGTGCATGTCAACGTCAGGT | 60.885 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
3360 | 5830 | 2.046892 | CGTCAGGTGAGGGCCTTG | 60.047 | 66.667 | 7.89 | 1.04 | 36.58 | 3.61 |
3366 | 5836 | 0.555769 | AGGTGAGGGCCTTGTTTCAA | 59.444 | 50.000 | 7.89 | 0.00 | 34.71 | 2.69 |
3370 | 5840 | 1.777878 | TGAGGGCCTTGTTTCAAGGTA | 59.222 | 47.619 | 23.61 | 8.22 | 39.60 | 3.08 |
3387 | 5857 | 3.805207 | AGGTACTTTGGGCTAAATAGCG | 58.195 | 45.455 | 6.36 | 0.00 | 44.12 | 4.26 |
3391 | 5861 | 7.249758 | AGGTACTTTGGGCTAAATAGCGTTTT | 61.250 | 38.462 | 6.36 | 0.00 | 44.12 | 2.43 |
3392 | 5862 | 8.013812 | AGGTACTTTGGGCTAAATAGCGTTTTA | 61.014 | 37.037 | 6.36 | 0.00 | 44.12 | 1.52 |
3400 | 5870 | 5.321516 | GCTAAATAGCGTTTTACTGTGTGG | 58.678 | 41.667 | 0.00 | 0.00 | 39.82 | 4.17 |
3401 | 5871 | 4.759516 | AAATAGCGTTTTACTGTGTGGG | 57.240 | 40.909 | 0.00 | 0.00 | 0.00 | 4.61 |
3402 | 5872 | 1.515081 | TAGCGTTTTACTGTGTGGGC | 58.485 | 50.000 | 0.00 | 0.00 | 0.00 | 5.36 |
3404 | 5874 | 1.778027 | GCGTTTTACTGTGTGGGCGT | 61.778 | 55.000 | 0.00 | 0.00 | 0.00 | 5.68 |
3406 | 5876 | 1.595976 | CGTTTTACTGTGTGGGCGTTG | 60.596 | 52.381 | 0.00 | 0.00 | 0.00 | 4.10 |
3408 | 5878 | 1.752683 | TTTACTGTGTGGGCGTTGTT | 58.247 | 45.000 | 0.00 | 0.00 | 0.00 | 2.83 |
3410 | 5880 | 0.816018 | TACTGTGTGGGCGTTGTTGG | 60.816 | 55.000 | 0.00 | 0.00 | 0.00 | 3.77 |
3411 | 5881 | 2.830827 | TGTGTGGGCGTTGTTGGG | 60.831 | 61.111 | 0.00 | 0.00 | 0.00 | 4.12 |
3412 | 5882 | 4.279043 | GTGTGGGCGTTGTTGGGC | 62.279 | 66.667 | 0.00 | 0.00 | 0.00 | 5.36 |
3448 | 6129 | 0.322098 | TCCAACGCGATGACCCAAAT | 60.322 | 50.000 | 18.77 | 0.00 | 0.00 | 2.32 |
3453 | 6134 | 1.024046 | CGCGATGACCCAAATGGACA | 61.024 | 55.000 | 0.00 | 1.61 | 43.00 | 4.02 |
3455 | 6136 | 1.819928 | CGATGACCCAAATGGACACA | 58.180 | 50.000 | 0.00 | 0.00 | 41.63 | 3.72 |
3456 | 6137 | 2.368439 | CGATGACCCAAATGGACACAT | 58.632 | 47.619 | 0.00 | 3.70 | 41.63 | 3.21 |
3467 | 6148 | 4.847255 | GACACATGCTTTGTCCGC | 57.153 | 55.556 | 4.05 | 0.00 | 37.93 | 5.54 |
3468 | 6149 | 1.210155 | GACACATGCTTTGTCCGCC | 59.790 | 57.895 | 4.05 | 0.00 | 37.93 | 6.13 |
3469 | 6150 | 1.228245 | ACACATGCTTTGTCCGCCT | 60.228 | 52.632 | 0.00 | 0.00 | 36.00 | 5.52 |
3470 | 6151 | 0.036164 | ACACATGCTTTGTCCGCCTA | 59.964 | 50.000 | 0.00 | 0.00 | 36.00 | 3.93 |
3471 | 6152 | 1.340017 | ACACATGCTTTGTCCGCCTAT | 60.340 | 47.619 | 0.00 | 0.00 | 36.00 | 2.57 |
3472 | 6153 | 1.745087 | CACATGCTTTGTCCGCCTATT | 59.255 | 47.619 | 0.00 | 0.00 | 36.00 | 1.73 |
3473 | 6154 | 1.745087 | ACATGCTTTGTCCGCCTATTG | 59.255 | 47.619 | 0.00 | 0.00 | 30.89 | 1.90 |
3474 | 6155 | 1.745087 | CATGCTTTGTCCGCCTATTGT | 59.255 | 47.619 | 0.00 | 0.00 | 0.00 | 2.71 |
3475 | 6156 | 1.904287 | TGCTTTGTCCGCCTATTGTT | 58.096 | 45.000 | 0.00 | 0.00 | 0.00 | 2.83 |
3476 | 6157 | 2.235016 | TGCTTTGTCCGCCTATTGTTT | 58.765 | 42.857 | 0.00 | 0.00 | 0.00 | 2.83 |
3477 | 6158 | 2.030363 | TGCTTTGTCCGCCTATTGTTTG | 60.030 | 45.455 | 0.00 | 0.00 | 0.00 | 2.93 |
3478 | 6159 | 2.030274 | GCTTTGTCCGCCTATTGTTTGT | 60.030 | 45.455 | 0.00 | 0.00 | 0.00 | 2.83 |
3479 | 6160 | 3.552068 | GCTTTGTCCGCCTATTGTTTGTT | 60.552 | 43.478 | 0.00 | 0.00 | 0.00 | 2.83 |
3480 | 6161 | 4.616953 | CTTTGTCCGCCTATTGTTTGTTT | 58.383 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 4.330074 | CCCAGTTTTTGCGACTCTACATAG | 59.670 | 45.833 | 0.00 | 0.00 | 0.00 | 2.23 |
60 | 61 | 5.901552 | AGTGTCATTGGGTTTGTAAAACTG | 58.098 | 37.500 | 3.14 | 0.00 | 0.00 | 3.16 |
114 | 115 | 9.280174 | CCAGTTCACTAAGTTTTAATCTTACCA | 57.720 | 33.333 | 0.00 | 0.00 | 0.00 | 3.25 |
116 | 117 | 9.281371 | ACCCAGTTCACTAAGTTTTAATCTTAC | 57.719 | 33.333 | 0.00 | 0.00 | 0.00 | 2.34 |
138 | 139 | 5.299531 | TGACATTGACGTTTTGAAATACCCA | 59.700 | 36.000 | 0.00 | 0.00 | 0.00 | 4.51 |
140 | 141 | 6.435428 | AGTGACATTGACGTTTTGAAATACC | 58.565 | 36.000 | 0.00 | 0.00 | 0.00 | 2.73 |
149 | 150 | 4.127171 | ACTGCTAAGTGACATTGACGTTT | 58.873 | 39.130 | 0.00 | 0.00 | 34.48 | 3.60 |
189 | 190 | 6.419710 | CAGTACACGATCAACTTGAAGTACAA | 59.580 | 38.462 | 18.89 | 0.00 | 32.27 | 2.41 |
196 | 197 | 7.773864 | TTAAAACAGTACACGATCAACTTGA | 57.226 | 32.000 | 0.00 | 0.00 | 0.00 | 3.02 |
207 | 208 | 7.225145 | TCGTGGGCATATATTAAAACAGTACAC | 59.775 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
212 | 213 | 6.241207 | CCTCGTGGGCATATATTAAAACAG | 57.759 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
240 | 241 | 9.466497 | AGACTGTGGAATTGTTGATGTATTATT | 57.534 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
245 | 246 | 5.245531 | GGAGACTGTGGAATTGTTGATGTA | 58.754 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
263 | 264 | 1.700186 | ACAAAGAACAGAGGGGGAGAC | 59.300 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
275 | 276 | 4.531659 | AAAGCACGTCTGTACAAAGAAC | 57.468 | 40.909 | 0.00 | 0.00 | 0.00 | 3.01 |
286 | 287 | 3.782889 | AAGCAAAAGAAAAGCACGTCT | 57.217 | 38.095 | 0.00 | 0.00 | 0.00 | 4.18 |
323 | 325 | 0.038618 | AAATTTCCCAAAGCGCGTCC | 60.039 | 50.000 | 8.43 | 0.00 | 0.00 | 4.79 |
622 | 642 | 2.860735 | CAGTTCAGTCAGCTAATACGGC | 59.139 | 50.000 | 0.00 | 0.00 | 0.00 | 5.68 |
629 | 649 | 2.094494 | GCAGTAGCAGTTCAGTCAGCTA | 60.094 | 50.000 | 0.00 | 0.00 | 41.58 | 3.32 |
631 | 651 | 1.074752 | GCAGTAGCAGTTCAGTCAGC | 58.925 | 55.000 | 0.00 | 0.00 | 41.58 | 4.26 |
636 | 656 | 3.057245 | TGACTGTAGCAGTAGCAGTTCAG | 60.057 | 47.826 | 1.43 | 0.00 | 45.44 | 3.02 |
638 | 658 | 3.246619 | GTGACTGTAGCAGTAGCAGTTC | 58.753 | 50.000 | 1.43 | 0.00 | 45.44 | 3.01 |
694 | 716 | 0.391793 | GACTACCCTGCTGCTTCCAC | 60.392 | 60.000 | 0.00 | 0.00 | 0.00 | 4.02 |
715 | 737 | 1.296727 | GGCGGCGACTATAGCTTTTT | 58.703 | 50.000 | 12.98 | 0.00 | 34.52 | 1.94 |
733 | 755 | 0.451783 | CAAATTCCGGGAAGCTTCGG | 59.548 | 55.000 | 19.91 | 18.93 | 46.89 | 4.30 |
738 | 760 | 1.215382 | GGTGCAAATTCCGGGAAGC | 59.785 | 57.895 | 15.72 | 13.33 | 0.00 | 3.86 |
750 | 772 | 1.163420 | ACAGACGAAATGCGGTGCAA | 61.163 | 50.000 | 0.00 | 0.00 | 43.62 | 4.08 |
751 | 773 | 0.319986 | TACAGACGAAATGCGGTGCA | 60.320 | 50.000 | 0.00 | 0.00 | 46.49 | 4.57 |
752 | 774 | 0.094730 | GTACAGACGAAATGCGGTGC | 59.905 | 55.000 | 0.00 | 0.00 | 46.49 | 5.01 |
859 | 910 | 3.973973 | TCTTCTTCTTCTTGGTCCTTCCA | 59.026 | 43.478 | 0.00 | 0.00 | 45.60 | 3.53 |
931 | 982 | 4.715523 | CCGGCAAAAGGGGCTCGA | 62.716 | 66.667 | 0.00 | 0.00 | 0.00 | 4.04 |
937 | 988 | 3.989787 | GTGGTGCCGGCAAAAGGG | 61.990 | 66.667 | 34.66 | 0.00 | 0.00 | 3.95 |
939 | 990 | 4.341502 | CCGTGGTGCCGGCAAAAG | 62.342 | 66.667 | 34.66 | 23.57 | 41.78 | 2.27 |
946 | 997 | 3.515316 | AAGTCAGTCCGTGGTGCCG | 62.515 | 63.158 | 0.00 | 0.00 | 0.00 | 5.69 |
947 | 998 | 1.961277 | CAAGTCAGTCCGTGGTGCC | 60.961 | 63.158 | 0.00 | 0.00 | 0.00 | 5.01 |
948 | 999 | 2.607892 | GCAAGTCAGTCCGTGGTGC | 61.608 | 63.158 | 0.00 | 0.00 | 0.00 | 5.01 |
949 | 1000 | 1.069765 | AGCAAGTCAGTCCGTGGTG | 59.930 | 57.895 | 0.00 | 0.00 | 0.00 | 4.17 |
950 | 1001 | 1.069765 | CAGCAAGTCAGTCCGTGGT | 59.930 | 57.895 | 0.00 | 0.00 | 0.00 | 4.16 |
951 | 1002 | 2.320587 | GCAGCAAGTCAGTCCGTGG | 61.321 | 63.158 | 0.00 | 0.00 | 0.00 | 4.94 |
952 | 1003 | 1.287730 | GAGCAGCAAGTCAGTCCGTG | 61.288 | 60.000 | 0.00 | 0.00 | 0.00 | 4.94 |
955 | 1006 | 0.108424 | ATCGAGCAGCAAGTCAGTCC | 60.108 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
976 | 1043 | 5.413309 | TTCTCTTGGCTAGAAGAAGAAGG | 57.587 | 43.478 | 0.00 | 0.00 | 31.52 | 3.46 |
1028 | 1140 | 2.416027 | CGTGACACATCGTTCTGGATCT | 60.416 | 50.000 | 6.37 | 0.00 | 0.00 | 2.75 |
1035 | 1147 | 2.726691 | CCGCCGTGACACATCGTTC | 61.727 | 63.158 | 6.37 | 0.00 | 0.00 | 3.95 |
1097 | 1209 | 2.436292 | AGAGTACGGCGAGCTCGT | 60.436 | 61.111 | 34.46 | 19.96 | 43.64 | 4.18 |
1221 | 1333 | 7.500559 | AGCTAGCTAGAACCAAATCCAAATTAG | 59.499 | 37.037 | 25.15 | 0.00 | 0.00 | 1.73 |
1222 | 1334 | 7.346471 | AGCTAGCTAGAACCAAATCCAAATTA | 58.654 | 34.615 | 25.15 | 0.00 | 0.00 | 1.40 |
1223 | 1335 | 6.190587 | AGCTAGCTAGAACCAAATCCAAATT | 58.809 | 36.000 | 25.15 | 0.00 | 0.00 | 1.82 |
1235 | 1352 | 3.516615 | CACCTCACAAGCTAGCTAGAAC | 58.483 | 50.000 | 25.15 | 7.60 | 0.00 | 3.01 |
1240 | 1357 | 1.197430 | AGGCACCTCACAAGCTAGCT | 61.197 | 55.000 | 12.68 | 12.68 | 0.00 | 3.32 |
1241 | 1358 | 0.742635 | GAGGCACCTCACAAGCTAGC | 60.743 | 60.000 | 6.62 | 6.62 | 42.31 | 3.42 |
1242 | 1359 | 0.901124 | AGAGGCACCTCACAAGCTAG | 59.099 | 55.000 | 18.67 | 0.00 | 44.99 | 3.42 |
1245 | 1362 | 0.673022 | CAGAGAGGCACCTCACAAGC | 60.673 | 60.000 | 18.67 | 3.04 | 44.99 | 4.01 |
1246 | 1363 | 0.673022 | GCAGAGAGGCACCTCACAAG | 60.673 | 60.000 | 18.67 | 10.10 | 44.99 | 3.16 |
1248 | 1365 | 0.251787 | TAGCAGAGAGGCACCTCACA | 60.252 | 55.000 | 18.67 | 0.00 | 44.99 | 3.58 |
1249 | 1366 | 0.174617 | GTAGCAGAGAGGCACCTCAC | 59.825 | 60.000 | 18.67 | 12.41 | 44.99 | 3.51 |
1250 | 1367 | 0.972983 | GGTAGCAGAGAGGCACCTCA | 60.973 | 60.000 | 18.67 | 0.00 | 44.99 | 3.86 |
1251 | 1368 | 0.686112 | AGGTAGCAGAGAGGCACCTC | 60.686 | 60.000 | 8.74 | 8.74 | 39.48 | 3.85 |
1252 | 1369 | 0.252467 | AAGGTAGCAGAGAGGCACCT | 60.252 | 55.000 | 0.00 | 0.00 | 42.85 | 4.00 |
1253 | 1370 | 0.107945 | CAAGGTAGCAGAGAGGCACC | 60.108 | 60.000 | 0.00 | 0.00 | 36.11 | 5.01 |
1254 | 1371 | 0.610687 | ACAAGGTAGCAGAGAGGCAC | 59.389 | 55.000 | 0.00 | 0.00 | 35.83 | 5.01 |
1255 | 1372 | 1.002430 | CAACAAGGTAGCAGAGAGGCA | 59.998 | 52.381 | 0.00 | 0.00 | 35.83 | 4.75 |
1256 | 1373 | 1.276421 | TCAACAAGGTAGCAGAGAGGC | 59.724 | 52.381 | 0.00 | 0.00 | 0.00 | 4.70 |
1258 | 1375 | 2.300152 | TGGTCAACAAGGTAGCAGAGAG | 59.700 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
1259 | 1376 | 2.325484 | TGGTCAACAAGGTAGCAGAGA | 58.675 | 47.619 | 0.00 | 0.00 | 0.00 | 3.10 |
1260 | 1377 | 2.808543 | GTTGGTCAACAAGGTAGCAGAG | 59.191 | 50.000 | 8.77 | 0.00 | 40.38 | 3.35 |
1261 | 1378 | 2.486548 | GGTTGGTCAACAAGGTAGCAGA | 60.487 | 50.000 | 14.69 | 0.00 | 42.85 | 4.26 |
1262 | 1379 | 1.880027 | GGTTGGTCAACAAGGTAGCAG | 59.120 | 52.381 | 14.69 | 0.00 | 42.85 | 4.24 |
1263 | 1380 | 1.493022 | AGGTTGGTCAACAAGGTAGCA | 59.507 | 47.619 | 14.69 | 0.00 | 42.85 | 3.49 |
1264 | 1381 | 2.152016 | GAGGTTGGTCAACAAGGTAGC | 58.848 | 52.381 | 14.69 | 0.00 | 42.85 | 3.58 |
1265 | 1382 | 2.552373 | GGGAGGTTGGTCAACAAGGTAG | 60.552 | 54.545 | 14.69 | 0.00 | 42.85 | 3.18 |
1266 | 1383 | 1.422402 | GGGAGGTTGGTCAACAAGGTA | 59.578 | 52.381 | 14.69 | 0.00 | 42.85 | 3.08 |
1267 | 1384 | 0.185175 | GGGAGGTTGGTCAACAAGGT | 59.815 | 55.000 | 14.69 | 0.00 | 42.85 | 3.50 |
1268 | 1385 | 0.184933 | TGGGAGGTTGGTCAACAAGG | 59.815 | 55.000 | 14.69 | 0.00 | 42.85 | 3.61 |
1269 | 1386 | 2.065899 | TTGGGAGGTTGGTCAACAAG | 57.934 | 50.000 | 14.69 | 0.00 | 42.85 | 3.16 |
1270 | 1387 | 2.697751 | CAATTGGGAGGTTGGTCAACAA | 59.302 | 45.455 | 14.69 | 2.02 | 42.85 | 2.83 |
1271 | 1388 | 2.091610 | TCAATTGGGAGGTTGGTCAACA | 60.092 | 45.455 | 14.69 | 0.00 | 42.85 | 3.33 |
1272 | 1389 | 2.593026 | TCAATTGGGAGGTTGGTCAAC | 58.407 | 47.619 | 5.42 | 5.35 | 40.45 | 3.18 |
1273 | 1390 | 3.541242 | ATCAATTGGGAGGTTGGTCAA | 57.459 | 42.857 | 5.42 | 0.00 | 0.00 | 3.18 |
1274 | 1391 | 3.075882 | AGAATCAATTGGGAGGTTGGTCA | 59.924 | 43.478 | 5.42 | 0.00 | 0.00 | 4.02 |
1275 | 1392 | 3.701664 | AGAATCAATTGGGAGGTTGGTC | 58.298 | 45.455 | 5.42 | 0.00 | 0.00 | 4.02 |
1276 | 1393 | 3.833559 | AGAATCAATTGGGAGGTTGGT | 57.166 | 42.857 | 5.42 | 0.00 | 0.00 | 3.67 |
1277 | 1394 | 4.159135 | CAGAAGAATCAATTGGGAGGTTGG | 59.841 | 45.833 | 5.42 | 0.00 | 0.00 | 3.77 |
1278 | 1395 | 4.768968 | ACAGAAGAATCAATTGGGAGGTTG | 59.231 | 41.667 | 5.42 | 0.06 | 0.00 | 3.77 |
1279 | 1396 | 5.003096 | ACAGAAGAATCAATTGGGAGGTT | 57.997 | 39.130 | 5.42 | 0.00 | 0.00 | 3.50 |
1280 | 1397 | 4.664688 | ACAGAAGAATCAATTGGGAGGT | 57.335 | 40.909 | 5.42 | 0.00 | 0.00 | 3.85 |
1281 | 1398 | 5.990120 | AAACAGAAGAATCAATTGGGAGG | 57.010 | 39.130 | 5.42 | 0.00 | 0.00 | 4.30 |
1282 | 1399 | 9.401058 | ACTATAAACAGAAGAATCAATTGGGAG | 57.599 | 33.333 | 5.42 | 0.00 | 0.00 | 4.30 |
1283 | 1400 | 9.177608 | CACTATAAACAGAAGAATCAATTGGGA | 57.822 | 33.333 | 5.42 | 0.00 | 0.00 | 4.37 |
1284 | 1401 | 7.917505 | GCACTATAAACAGAAGAATCAATTGGG | 59.082 | 37.037 | 5.42 | 0.00 | 0.00 | 4.12 |
1285 | 1402 | 8.461222 | TGCACTATAAACAGAAGAATCAATTGG | 58.539 | 33.333 | 5.42 | 0.00 | 0.00 | 3.16 |
1286 | 1403 | 9.844790 | TTGCACTATAAACAGAAGAATCAATTG | 57.155 | 29.630 | 0.00 | 0.00 | 0.00 | 2.32 |
1288 | 1405 | 9.236006 | ACTTGCACTATAAACAGAAGAATCAAT | 57.764 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
1289 | 1406 | 8.506437 | CACTTGCACTATAAACAGAAGAATCAA | 58.494 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
1290 | 1407 | 7.661437 | ACACTTGCACTATAAACAGAAGAATCA | 59.339 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
1291 | 1408 | 7.959651 | CACACTTGCACTATAAACAGAAGAATC | 59.040 | 37.037 | 0.00 | 0.00 | 0.00 | 2.52 |
1292 | 1409 | 7.094634 | CCACACTTGCACTATAAACAGAAGAAT | 60.095 | 37.037 | 0.00 | 0.00 | 0.00 | 2.40 |
1293 | 1410 | 6.204688 | CCACACTTGCACTATAAACAGAAGAA | 59.795 | 38.462 | 0.00 | 0.00 | 0.00 | 2.52 |
1294 | 1411 | 5.700832 | CCACACTTGCACTATAAACAGAAGA | 59.299 | 40.000 | 0.00 | 0.00 | 0.00 | 2.87 |
1295 | 1412 | 5.700832 | TCCACACTTGCACTATAAACAGAAG | 59.299 | 40.000 | 0.00 | 0.00 | 0.00 | 2.85 |
1296 | 1413 | 5.616270 | TCCACACTTGCACTATAAACAGAA | 58.384 | 37.500 | 0.00 | 0.00 | 0.00 | 3.02 |
1297 | 1414 | 5.222079 | TCCACACTTGCACTATAAACAGA | 57.778 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
1298 | 1415 | 5.412594 | ACATCCACACTTGCACTATAAACAG | 59.587 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1299 | 1416 | 5.181056 | CACATCCACACTTGCACTATAAACA | 59.819 | 40.000 | 0.00 | 0.00 | 0.00 | 2.83 |
1300 | 1417 | 5.181245 | ACACATCCACACTTGCACTATAAAC | 59.819 | 40.000 | 0.00 | 0.00 | 0.00 | 2.01 |
1301 | 1418 | 5.181056 | CACACATCCACACTTGCACTATAAA | 59.819 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
1302 | 1419 | 4.694982 | CACACATCCACACTTGCACTATAA | 59.305 | 41.667 | 0.00 | 0.00 | 0.00 | 0.98 |
1303 | 1420 | 4.252878 | CACACATCCACACTTGCACTATA | 58.747 | 43.478 | 0.00 | 0.00 | 0.00 | 1.31 |
1304 | 1421 | 3.076621 | CACACATCCACACTTGCACTAT | 58.923 | 45.455 | 0.00 | 0.00 | 0.00 | 2.12 |
1305 | 1422 | 2.158827 | ACACACATCCACACTTGCACTA | 60.159 | 45.455 | 0.00 | 0.00 | 0.00 | 2.74 |
1306 | 1423 | 1.311859 | CACACATCCACACTTGCACT | 58.688 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
1307 | 1424 | 1.024271 | ACACACATCCACACTTGCAC | 58.976 | 50.000 | 0.00 | 0.00 | 0.00 | 4.57 |
1308 | 1425 | 1.404748 | CAACACACATCCACACTTGCA | 59.595 | 47.619 | 0.00 | 0.00 | 0.00 | 4.08 |
1309 | 1426 | 1.405105 | ACAACACACATCCACACTTGC | 59.595 | 47.619 | 0.00 | 0.00 | 0.00 | 4.01 |
1310 | 1427 | 2.682352 | TCACAACACACATCCACACTTG | 59.318 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
1311 | 1428 | 2.997980 | TCACAACACACATCCACACTT | 58.002 | 42.857 | 0.00 | 0.00 | 0.00 | 3.16 |
1312 | 1429 | 2.708216 | TCACAACACACATCCACACT | 57.292 | 45.000 | 0.00 | 0.00 | 0.00 | 3.55 |
1313 | 1430 | 3.314913 | TGAATCACAACACACATCCACAC | 59.685 | 43.478 | 0.00 | 0.00 | 0.00 | 3.82 |
1314 | 1431 | 3.549794 | TGAATCACAACACACATCCACA | 58.450 | 40.909 | 0.00 | 0.00 | 0.00 | 4.17 |
1315 | 1432 | 4.771590 | ATGAATCACAACACACATCCAC | 57.228 | 40.909 | 0.00 | 0.00 | 0.00 | 4.02 |
1316 | 1433 | 4.218200 | GGAATGAATCACAACACACATCCA | 59.782 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
1317 | 1434 | 4.672542 | CGGAATGAATCACAACACACATCC | 60.673 | 45.833 | 0.00 | 0.00 | 0.00 | 3.51 |
1318 | 1435 | 4.406069 | CGGAATGAATCACAACACACATC | 58.594 | 43.478 | 0.00 | 0.00 | 0.00 | 3.06 |
1319 | 1436 | 3.191162 | CCGGAATGAATCACAACACACAT | 59.809 | 43.478 | 0.00 | 0.00 | 0.00 | 3.21 |
1320 | 1437 | 2.551887 | CCGGAATGAATCACAACACACA | 59.448 | 45.455 | 0.00 | 0.00 | 0.00 | 3.72 |
1321 | 1438 | 2.552315 | ACCGGAATGAATCACAACACAC | 59.448 | 45.455 | 9.46 | 0.00 | 0.00 | 3.82 |
1322 | 1439 | 2.811431 | GACCGGAATGAATCACAACACA | 59.189 | 45.455 | 9.46 | 0.00 | 0.00 | 3.72 |
1323 | 1440 | 2.161609 | GGACCGGAATGAATCACAACAC | 59.838 | 50.000 | 9.46 | 0.00 | 0.00 | 3.32 |
1324 | 1441 | 2.432444 | GGACCGGAATGAATCACAACA | 58.568 | 47.619 | 9.46 | 0.00 | 0.00 | 3.33 |
1325 | 1442 | 1.396996 | CGGACCGGAATGAATCACAAC | 59.603 | 52.381 | 9.46 | 0.00 | 0.00 | 3.32 |
1326 | 1443 | 1.732941 | CGGACCGGAATGAATCACAA | 58.267 | 50.000 | 9.46 | 0.00 | 0.00 | 3.33 |
1327 | 1444 | 3.451793 | CGGACCGGAATGAATCACA | 57.548 | 52.632 | 9.46 | 0.00 | 0.00 | 3.58 |
1339 | 1456 | 2.356553 | TTTCGCTTGTCCGGACCG | 60.357 | 61.111 | 31.19 | 25.74 | 0.00 | 4.79 |
1340 | 1457 | 1.289800 | GAGTTTCGCTTGTCCGGACC | 61.290 | 60.000 | 31.19 | 15.31 | 0.00 | 4.46 |
1341 | 1458 | 0.319641 | AGAGTTTCGCTTGTCCGGAC | 60.320 | 55.000 | 28.17 | 28.17 | 0.00 | 4.79 |
1342 | 1459 | 0.319555 | CAGAGTTTCGCTTGTCCGGA | 60.320 | 55.000 | 0.00 | 0.00 | 0.00 | 5.14 |
1343 | 1460 | 1.901650 | GCAGAGTTTCGCTTGTCCGG | 61.902 | 60.000 | 0.00 | 0.00 | 0.00 | 5.14 |
1344 | 1461 | 1.221466 | TGCAGAGTTTCGCTTGTCCG | 61.221 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
1345 | 1462 | 1.160137 | ATGCAGAGTTTCGCTTGTCC | 58.840 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
1355 | 1472 | 6.839124 | TCATCAAAACCATAATGCAGAGTT | 57.161 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
1357 | 1474 | 6.623486 | TGTTCATCAAAACCATAATGCAGAG | 58.377 | 36.000 | 0.00 | 0.00 | 0.00 | 3.35 |
1379 | 1496 | 7.039293 | TGCAGGTTCAGTAATCGGTATATATGT | 60.039 | 37.037 | 0.00 | 0.00 | 0.00 | 2.29 |
1383 | 1500 | 5.801531 | TGCAGGTTCAGTAATCGGTATAT | 57.198 | 39.130 | 0.00 | 0.00 | 0.00 | 0.86 |
1384 | 1501 | 5.279306 | GGATGCAGGTTCAGTAATCGGTATA | 60.279 | 44.000 | 0.00 | 0.00 | 0.00 | 1.47 |
1385 | 1502 | 4.503296 | GGATGCAGGTTCAGTAATCGGTAT | 60.503 | 45.833 | 0.00 | 0.00 | 0.00 | 2.73 |
1386 | 1503 | 3.181469 | GGATGCAGGTTCAGTAATCGGTA | 60.181 | 47.826 | 0.00 | 0.00 | 0.00 | 4.02 |
1387 | 1504 | 2.420129 | GGATGCAGGTTCAGTAATCGGT | 60.420 | 50.000 | 0.00 | 0.00 | 0.00 | 4.69 |
1409 | 1526 | 3.283684 | CCGGTTGGCACTCGCAAA | 61.284 | 61.111 | 0.00 | 0.00 | 41.24 | 3.68 |
1419 | 1536 | 0.893270 | TGTCAAAGATGGCCGGTTGG | 60.893 | 55.000 | 1.90 | 0.00 | 38.77 | 3.77 |
1420 | 1537 | 1.133025 | GATGTCAAAGATGGCCGGTTG | 59.867 | 52.381 | 1.90 | 0.00 | 0.00 | 3.77 |
1421 | 1538 | 1.463674 | GATGTCAAAGATGGCCGGTT | 58.536 | 50.000 | 1.90 | 0.00 | 0.00 | 4.44 |
1436 | 1553 | 1.611519 | GAGCCTAGCTAGGACGATGT | 58.388 | 55.000 | 38.74 | 17.24 | 46.63 | 3.06 |
1452 | 1569 | 1.330655 | TACTGTGGCTGGCTAGGAGC | 61.331 | 60.000 | 0.00 | 0.00 | 41.46 | 4.70 |
1453 | 1570 | 1.418334 | ATACTGTGGCTGGCTAGGAG | 58.582 | 55.000 | 0.00 | 0.00 | 0.00 | 3.69 |
1454 | 1571 | 1.486310 | CAATACTGTGGCTGGCTAGGA | 59.514 | 52.381 | 0.00 | 0.00 | 0.00 | 2.94 |
1455 | 1572 | 1.475751 | CCAATACTGTGGCTGGCTAGG | 60.476 | 57.143 | 0.00 | 0.00 | 0.00 | 3.02 |
1456 | 1573 | 1.959042 | CCAATACTGTGGCTGGCTAG | 58.041 | 55.000 | 2.00 | 0.00 | 0.00 | 3.42 |
1466 | 1583 | 2.419021 | GCATGCCAATTGCCAATACTGT | 60.419 | 45.455 | 6.36 | 0.00 | 40.16 | 3.55 |
1496 | 1613 | 6.861065 | TCTGACTAACTTGATCACAAAACC | 57.139 | 37.500 | 0.00 | 0.00 | 35.49 | 3.27 |
1515 | 1636 | 7.338703 | AGAGCTAAATTCAAAAGCATCATCTGA | 59.661 | 33.333 | 0.00 | 0.00 | 38.75 | 3.27 |
1545 | 1666 | 7.307514 | GCATCTGAATCTGAGCAGAAGATTAAG | 60.308 | 40.741 | 14.42 | 11.55 | 42.94 | 1.85 |
1589 | 1710 | 8.999431 | ACAAGTCAGGTATAAACATGTTTGTAG | 58.001 | 33.333 | 29.72 | 16.98 | 40.65 | 2.74 |
1725 | 1871 | 4.630644 | ACATGACTGGATGTGTTCTCTT | 57.369 | 40.909 | 0.00 | 0.00 | 35.17 | 2.85 |
1726 | 1872 | 4.528206 | TGTACATGACTGGATGTGTTCTCT | 59.472 | 41.667 | 0.00 | 0.00 | 37.16 | 3.10 |
1727 | 1873 | 4.820897 | TGTACATGACTGGATGTGTTCTC | 58.179 | 43.478 | 0.00 | 0.00 | 37.16 | 2.87 |
1728 | 1874 | 4.890158 | TGTACATGACTGGATGTGTTCT | 57.110 | 40.909 | 0.00 | 0.00 | 37.16 | 3.01 |
1729 | 1875 | 4.754618 | TGTTGTACATGACTGGATGTGTTC | 59.245 | 41.667 | 0.00 | 0.00 | 37.16 | 3.18 |
1754 | 1900 | 7.435488 | GCAGTTAACTATGAGTGTATGTACTGG | 59.565 | 40.741 | 8.04 | 0.00 | 31.34 | 4.00 |
1799 | 1981 | 3.125146 | TGTGTGCAAAGAATCGCATAGAC | 59.875 | 43.478 | 0.00 | 0.00 | 40.89 | 2.59 |
1865 | 2047 | 2.300967 | TGGCCTCCAGATGGTCACC | 61.301 | 63.158 | 3.32 | 0.00 | 33.83 | 4.02 |
1890 | 2072 | 1.014564 | GTTTTCTCCGGTCTGCCTCG | 61.015 | 60.000 | 0.00 | 0.00 | 0.00 | 4.63 |
1907 | 2089 | 0.320771 | GTCGCAGTGGATGACAGGTT | 60.321 | 55.000 | 0.00 | 0.00 | 32.91 | 3.50 |
1913 | 2095 | 4.794439 | CGCCGTCGCAGTGGATGA | 62.794 | 66.667 | 0.00 | 0.00 | 34.03 | 2.92 |
1989 | 2171 | 0.313043 | AGGACGTGTGTGTACCTTCG | 59.687 | 55.000 | 0.00 | 0.00 | 0.00 | 3.79 |
2064 | 2257 | 5.010314 | ACTTGTCCTACACATACACGAGAAA | 59.990 | 40.000 | 0.00 | 0.00 | 33.90 | 2.52 |
2074 | 2267 | 2.371841 | TCCAGCAACTTGTCCTACACAT | 59.628 | 45.455 | 0.00 | 0.00 | 33.90 | 3.21 |
2079 | 2294 | 3.935993 | GCTCCAGCAACTTGTCCTA | 57.064 | 52.632 | 0.00 | 0.00 | 41.59 | 2.94 |
2107 | 2322 | 2.629002 | ACCTTGTGGTGTGATTCGC | 58.371 | 52.632 | 0.00 | 0.00 | 46.51 | 4.70 |
2132 | 2347 | 8.770010 | TTTTGGTTCTCCTAAAAAGGATTACA | 57.230 | 30.769 | 0.00 | 0.00 | 36.02 | 2.41 |
2201 | 2420 | 6.072064 | TGTCATATGCACAATGTCATTCACAA | 60.072 | 34.615 | 9.94 | 0.00 | 38.97 | 3.33 |
2280 | 2499 | 0.376152 | CAGGCAGCGATGTCATTCAC | 59.624 | 55.000 | 8.46 | 0.00 | 0.00 | 3.18 |
2281 | 2500 | 1.371337 | GCAGGCAGCGATGTCATTCA | 61.371 | 55.000 | 8.46 | 0.00 | 0.00 | 2.57 |
2282 | 2501 | 1.354506 | GCAGGCAGCGATGTCATTC | 59.645 | 57.895 | 8.46 | 0.00 | 0.00 | 2.67 |
2283 | 2502 | 3.506108 | GCAGGCAGCGATGTCATT | 58.494 | 55.556 | 8.46 | 0.00 | 0.00 | 2.57 |
2317 | 2542 | 4.716784 | AGACACATTCAGGAAGCCAGTATA | 59.283 | 41.667 | 0.00 | 0.00 | 0.00 | 1.47 |
2403 | 2639 | 4.570663 | CTCCGGTAGCTTCGGCGG | 62.571 | 72.222 | 19.43 | 11.43 | 46.43 | 6.13 |
2584 | 4997 | 5.523916 | CCCGAGGTTATCAACTATCACAAAG | 59.476 | 44.000 | 0.00 | 0.00 | 0.00 | 2.77 |
2625 | 5041 | 1.712977 | CCGGACGAGGAGTTCTACCG | 61.713 | 65.000 | 0.00 | 0.00 | 39.82 | 4.02 |
2712 | 5140 | 1.832608 | ACCACTCCTCGTCTGTGCA | 60.833 | 57.895 | 0.00 | 0.00 | 0.00 | 4.57 |
2714 | 5142 | 0.319040 | CACACCACTCCTCGTCTGTG | 60.319 | 60.000 | 0.00 | 0.00 | 33.67 | 3.66 |
2715 | 5143 | 0.467474 | TCACACCACTCCTCGTCTGT | 60.467 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2897 | 5338 | 0.465705 | AGGTGTGCGATGATCGGAAT | 59.534 | 50.000 | 17.27 | 0.00 | 42.99 | 3.01 |
2906 | 5347 | 3.749064 | AGCGACGAGGTGTGCGAT | 61.749 | 61.111 | 0.00 | 0.00 | 32.22 | 4.58 |
3002 | 5443 | 6.128795 | CGTTTCTGTATCTCAAGAAAGACACC | 60.129 | 42.308 | 0.00 | 0.00 | 31.94 | 4.16 |
3221 | 5685 | 2.302157 | AGGGAAACGGAAATCGAAGAGT | 59.698 | 45.455 | 0.00 | 0.00 | 43.63 | 3.24 |
3279 | 5743 | 4.394712 | CGAAGGTCCGCCAAGCCT | 62.395 | 66.667 | 0.00 | 0.00 | 37.19 | 4.58 |
3307 | 5771 | 6.403200 | CCGCAATGCAATAGTACTACAAAACT | 60.403 | 38.462 | 4.31 | 0.00 | 0.00 | 2.66 |
3308 | 5772 | 5.737290 | CCGCAATGCAATAGTACTACAAAAC | 59.263 | 40.000 | 4.31 | 0.00 | 0.00 | 2.43 |
3309 | 5773 | 5.413213 | ACCGCAATGCAATAGTACTACAAAA | 59.587 | 36.000 | 4.31 | 0.00 | 0.00 | 2.44 |
3310 | 5774 | 4.938832 | ACCGCAATGCAATAGTACTACAAA | 59.061 | 37.500 | 4.31 | 0.00 | 0.00 | 2.83 |
3311 | 5775 | 4.331443 | CACCGCAATGCAATAGTACTACAA | 59.669 | 41.667 | 4.31 | 0.00 | 0.00 | 2.41 |
3315 | 5779 | 1.670811 | GCACCGCAATGCAATAGTACT | 59.329 | 47.619 | 5.91 | 0.00 | 45.39 | 2.73 |
3350 | 5820 | 0.555769 | ACCTTGAAACAAGGCCCTCA | 59.444 | 50.000 | 24.58 | 0.00 | 41.10 | 3.86 |
3360 | 5830 | 5.777850 | TTTAGCCCAAAGTACCTTGAAAC | 57.222 | 39.130 | 5.75 | 0.00 | 0.00 | 2.78 |
3366 | 5836 | 3.199289 | ACGCTATTTAGCCCAAAGTACCT | 59.801 | 43.478 | 4.08 | 0.00 | 46.34 | 3.08 |
3370 | 5840 | 5.708697 | AGTAAAACGCTATTTAGCCCAAAGT | 59.291 | 36.000 | 4.08 | 0.00 | 46.34 | 2.66 |
3374 | 5844 | 4.393680 | CACAGTAAAACGCTATTTAGCCCA | 59.606 | 41.667 | 4.08 | 0.00 | 46.34 | 5.36 |
3377 | 5847 | 5.321516 | CCACACAGTAAAACGCTATTTAGC | 58.678 | 41.667 | 0.00 | 0.00 | 45.62 | 3.09 |
3378 | 5848 | 5.672819 | GCCCACACAGTAAAACGCTATTTAG | 60.673 | 44.000 | 0.00 | 0.00 | 0.00 | 1.85 |
3380 | 5850 | 3.057806 | GCCCACACAGTAAAACGCTATTT | 60.058 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
3381 | 5851 | 2.486592 | GCCCACACAGTAAAACGCTATT | 59.513 | 45.455 | 0.00 | 0.00 | 0.00 | 1.73 |
3382 | 5852 | 2.081462 | GCCCACACAGTAAAACGCTAT | 58.919 | 47.619 | 0.00 | 0.00 | 0.00 | 2.97 |
3383 | 5853 | 1.515081 | GCCCACACAGTAAAACGCTA | 58.485 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
3384 | 5854 | 1.503818 | CGCCCACACAGTAAAACGCT | 61.504 | 55.000 | 0.00 | 0.00 | 0.00 | 5.07 |
3385 | 5855 | 1.082366 | CGCCCACACAGTAAAACGC | 60.082 | 57.895 | 0.00 | 0.00 | 0.00 | 4.84 |
3386 | 5856 | 0.658897 | AACGCCCACACAGTAAAACG | 59.341 | 50.000 | 0.00 | 0.00 | 0.00 | 3.60 |
3387 | 5857 | 1.402613 | ACAACGCCCACACAGTAAAAC | 59.597 | 47.619 | 0.00 | 0.00 | 0.00 | 2.43 |
3391 | 5861 | 0.816018 | CCAACAACGCCCACACAGTA | 60.816 | 55.000 | 0.00 | 0.00 | 0.00 | 2.74 |
3392 | 5862 | 2.118404 | CCAACAACGCCCACACAGT | 61.118 | 57.895 | 0.00 | 0.00 | 0.00 | 3.55 |
3393 | 5863 | 2.721231 | CCAACAACGCCCACACAG | 59.279 | 61.111 | 0.00 | 0.00 | 0.00 | 3.66 |
3394 | 5864 | 2.830827 | CCCAACAACGCCCACACA | 60.831 | 61.111 | 0.00 | 0.00 | 0.00 | 3.72 |
3395 | 5865 | 4.279043 | GCCCAACAACGCCCACAC | 62.279 | 66.667 | 0.00 | 0.00 | 0.00 | 3.82 |
3404 | 5874 | 1.605165 | CTAAAGCCCGGCCCAACAA | 60.605 | 57.895 | 5.55 | 0.00 | 0.00 | 2.83 |
3406 | 5876 | 1.749258 | CTCTAAAGCCCGGCCCAAC | 60.749 | 63.158 | 5.55 | 0.00 | 0.00 | 3.77 |
3408 | 5878 | 4.109675 | GCTCTAAAGCCCGGCCCA | 62.110 | 66.667 | 5.55 | 0.00 | 43.10 | 5.36 |
3416 | 5886 | 1.135944 | GCGTTGGAGTTGCTCTAAAGC | 60.136 | 52.381 | 14.40 | 14.40 | 44.73 | 3.51 |
3417 | 5887 | 1.126846 | CGCGTTGGAGTTGCTCTAAAG | 59.873 | 52.381 | 0.00 | 4.44 | 33.06 | 1.85 |
3418 | 5888 | 1.144969 | CGCGTTGGAGTTGCTCTAAA | 58.855 | 50.000 | 0.00 | 0.00 | 33.06 | 1.85 |
3455 | 6136 | 2.128771 | ACAATAGGCGGACAAAGCAT | 57.871 | 45.000 | 0.00 | 0.00 | 36.08 | 3.79 |
3456 | 6137 | 1.904287 | AACAATAGGCGGACAAAGCA | 58.096 | 45.000 | 0.00 | 0.00 | 36.08 | 3.91 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.