>input_sequence_50293
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-----------------------------------------------------------------------ATGGGGCGC
GGGAGGACGGAGATGAAGAAGATCCAGAACGATGTGTCACGGCGGGCCACCTTCGGCAAGCGCCGCCGCGGCCTGCTGAA
GAAGGCGCACGAGCTCGCCGTACTCTGCGGCGTCGACCTCGGCCTCCTCGTCTTCGACGACGACGGCGCCGGCAAGCTGT
TCGACTACTGCGCCCCTAACACAAGGTCCGCCCTCCGCCCGTTCCGTCACGCCTA-----ATTTGGATTTGGTTCTAGCT
AGCTTGTGAGGTGCCTCTCTGCTACCTTGTTGACCAACCTCCCAATTGATTCTTCTGTTTATAGTGCAAGTGTGGATGTG
TGTTGTGATTCATTCCGGTCCGGACAAGCGAAACTCTGCATTATGGTTTTGATGAACATATATACCGATTACTGAACCTG
CATCCTTTGCGAGTGCCAACCGGCCATCTTTGACATCGTCCTAGCTAGGCTCCTAGCCAGCCACAGTATTGGCAATTGGC
ATGCTCGAATTGGGTTTTG----TGATCAAGTTAGTCAGATGATGCTTTTGAATTTAGCTCTGATCTTAATCTTCTGCTC
AGATTCAGATGCTTATGTTCATATTCAGTCTACAA----------------ACATGTTTATACCTGACTTGTCATTTTTA
AGCTGGAGCGAGCTAATTGAGCGCTACGAGAGCATCACCAAACA------CCAGTTCCAGTTCCAGGGCCAGGGGATACA
TCATGATGATC---ATCAGGTCAATAAACAAAGAGAACACATCCAGTCATGTACAACATCCAGTACATACACTCA-----
----------------TAGTT--------------AACTGCATGCTTGCCT-TCTGATTGGTCTATGCGATTCTTTGCAC
ACAGCAGCAACCGTCGGCGGATATCATCGCAGGGCTGAGGCGTGAGGGTGACCATCTGGAGGCCAGCGTGACGAGGCAGA
CCGGAGAAAACCTGTCATCCACTGCGACGGCGGCGGAACTCGACGAACTGGAGCAGCGGCTGGAGTGCGTGCTGGGTAAA
GTCCGTGAAACGAAGGTACACACACGTCCT---GCACT---GCACGAAA--CTGTGGTGCTCACATGCTCAGTGTTTGAG
TGAACTGC---ATGACTTTCTCGTGTATGTG----------------------TAGGACAAGTTGCTGGAGCAGCAGTTG
GGCGAATCACACCACAAGGTAAGTAGTGTAATCCTTTTTAGGAGAACCAAAATCGATTCA----GAGGCACACAAAGCAA
TTTTTCATCCGGAATTTAATTGTGAATGACATTGTGCATATGACACGTAGGTGCACATCTTGGAGGACCAGAACAGCTTC
CTTCGCCGCCTGGTAATTGTGAATGACATCGCTGCCTGCCT------GCTGAGCTGCTATGTA-------TACTGGCTTC
CTGAATGTGTCTTCACTCTT----TGTCAGATGGGCGAGGAGGGGCAGCAACGTGCTGCTGTGGAGGCGTCCGCGGTGCC
GCCGAAGCTACCGG---------------------------AGGTGGAGGAGGAGGAATTGACGACGCTGCGGCTGTGGC
CGCGGCAGCTCCCCGACGTGTAA---------------------------------------------------------
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>chr3D_1_TraesCS3D01G090300
CTATGTAGAGTCGCAAAAACTGGGAATTGATCAAATACAGGAGCAGGTAGATGGCAATGGCAGTTTTACAAACCCAATGA
CACTTGCTTGAGCTACAAATTATAAGTTGGAAACTGGTAAGATTAAAACTTAGTGAACTGGGTATTTCAAAACGTCAATG
TCACTTAGCAGTGTACTCCTAGTATTGTCTTGTACTTCAAGTTGATCGTGTACTGTTTTAATATATGCCCACGAGGCGCA
AATAATACATCAACAATTCCACAGTCTCCCCCTCTGTTCTTTGTACAGACGTGCTTTTCTTTTGCTTTTCTTTGTGAA-T
GGATGGACGCGCTTTGGGAAATTTACCGATCGACAT---A---CTTATTACCGTGCGCTGGACCGCTGGCGCTGGTCACG
CAGAAACACA-CGGTCACCGCCGTGTATCTTATCGGGGTCACTCACGGTCGGGCCGCGCTTTCGCTTTACGCCGGAAACG
GCAAGTTTCCAA-GCCCGGAAGGAGGCGCGGTGACCCAAACACGTCCCAGACCGGCAACGCAGCCGCCGCTTTTGTTTTC
TTCCACGCGCACCGCAGCAGAGGATCGGTGACTGGCT---TGCT---TTC----CGGTCGGGCGTGACGGGCGGACCGGT
CGCCGTATTAGCTGACTGA--ACTGCTACTGCTACAGTCACACGGTACACTGGAGGGGGTCGGGATCGCTGCCTCGTGGA
AGCAGCAGGGTAGTCAAAAAAGCTATAGTCGCCGCCGAAGCTTCCCGGAATTTGCACCGCATT----------TCGTCTG
TACGGCGGCGCGTGGCCACGGACTATCACT--------------AGAGGAG-----AGGAGAGCACACCCGAGTTCACAG
TTTCAGTCTCAGTTGTTACAGCCTTTGCCTGGAAGGACCAAGAAGAAGAAGAACAGTATACGTGCCACACAAGGTACTTT
AGAATGCTTCTCCTGCTACGATCGAGCCCCTTTTGCCGGCACCACGG----------------ACTGACTTGCTGCTCGA
TCCCTTCTTCTTCT-------------------------------------------AGCCA--AGAGAAGATGGGGCGC
GGGAGGACGGAGATGAAGAAGATCCAGAACGATGTGTCACGGCGGGCCACCTTCGGCAAGCGCCGCCGCGGCCTGCTGAA
GAAGGCGCACGAGCTCGCCGTACTCTGCGGCGTCGACCTCGGCCTCCTCGTCTTCGACGACGACGGCGCCGGCAAGCTGT
TCGACTACTGCGCCCCTAACACAAGGTCCGCCCTCCGCCCGTTCCGTCACGCCTA-----ATTTGGATTTGGTTCTAGCT
AGCTTGTGAGGTGCCTCTCTGCTACCTTGTTGACCAACCTCCCAATTGATTCTTCTGTTTATAGTGCAAGTGTGGATGTG
TGTTGTGATTCATTCCGGTCCGGACAAGCGAAACTCTGCATTATGGTTTTGATGAACATATATACCGATTACTGAACCTG
CATCCTTTGCGAGTGCCAACCGGCCATCTTTGACATCGTCCTAGCTAGGCTCCTAGCCAGCCACAGTATTGGCAATTGGC
ATGCTCGAATTGGGTTTTG----TGATCAAGTTAGTCAGATGATGCTTTTGAATTTAGCTCTGATCTTAATCTTCTGCTC
AGATTCAGATGCTTATGTTCATATTCAGTCTACAA----------------ACATGTTTATACCTGACTTGTCATTTTTA
AGCTGGAGCGAGCTAATTGAGCGCTACGAGAGCATCACCAAACA------CCAGTTCCAGTTCCAGGGCCAGGGGATACA
TCATGATGATC---ATCAGGTCAATAAACAAAGAGAACACATCCAGTCATGTACAACATCCAGTACATACACTCA-----
----------------TAGTT--------------AACTGCATGCTTGCCT-TCTGATTGGTCTATGCGATTCTTTGCAC
ACAGCAGCAACCGTCGGCGGATATCATCGCAGGGCTGAGGCGTGAGGGTGACCATCTGGAGGCCAGCGTGACGAGGCAGA
CCGGAGAAAACCTGTCATCCACTGCGACGGCGGCGGAACTCGACGAACTGGAGCAGCGGCTGGAGTGCGTGCTGGGTAAA
GTCCGTGAAACGAAGGTACACACACGTCCT---GCACT---GCACGAAA--CTGTGGTGCTCACATGCTCAGTGTTTGAG
TGAACTGC---ATGACTTTCTCGTGTATGTG----------------------TAGGACAAGTTGCTGGAGCAGCAGTTG
GGCGAATCACACCACAAGGTAAGTAGTGTAATCCTTTTTAGGAGAACCAAAATCGATTCA----GAGGCACACAAAGCAA
TTTTTCATCCGGAATTTAATTGTGAATGACATTGTGCATATGACACGTAGGTGCACATCTTGGAGGACCAGAACAGCTTC
CTTCGCCGCCTGGTAATTGTGAATGACATCGCTGCCTGCCT------GCTGAGCTGCTATGTA-------TACTGGCTTC
CTGAATGTGTCTTCACTCTT----TGTCAGATGGGCGAGGAGGGGCAGCAACGTGCTGCTGTGGAGGCGTCCGCGGTGCC
GCCGAAGCTACCGG---------------------------AGGTGGAGGAGGAGGAATTGACGACGCTGCGGCTGTGGC
CGCGGCAGCTCCCCGACGTGTAAGGCATAGGCCTCAAGCCCAGCCTGCAACT----------------------------
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-------------------CTCCATACTTGAGTTGCCTGTGTGCATGTGGCTGCGGGTT---------------------
--GCTTGGATCGATCACGCCTTATTTTCAGGAAGTCCT---TTGTGATAGTTGATAACCTCGGGACGAGACTTGAGGAAC
CGGTAGAACTCCTCGTCCGGCGGAGATACTCCACGTAGCCTCGCCCGCTCTTGAGGTGTAAAGTCTGCAAAAAAGCCGTA
TTT------------CTTTTGCACAGACGAGGA-----GTGGTGTGAGTCGAGTTCCTCGACTCTGGCCTTGAACAGTTG
AAACCGCATGGCCTTCTCTTCCTCGTCGAAGTATGTTTTGTTGTACTTCTTCATCCAGTCCTCGAACTC--------CGC
CTCCATGTCCCGCTGTTCCTTCAGGGGCTCGCTGCCACCAGTCGCCTCATGCCCGGCATTCCGATCATCGCACACCTCGT
CGCTGATGATCTTTCCGGGCTTCATGTCAGTCACCTCCTTCCTGGCCTTCTCGTCCCCAATCACCTTGCAAGCTGACTCA
TCGGTGTCTTTCTTGAGATACAGAAACGCGAATCCACCGGATGACGCAGCCGCGGATACAGCGGCGCCACCGACGGCGAG
GTTCCTCCAGGAGTGGAGAAAGCGTGCCGGCCTCCCCGCAGCCGATCCTCGGGTCCCCAGCGCTTGTGCGTGCGCGCGTG
GCGAGAACCTCCGTGTGAGGAGCGAACCGAGGGCCCGGAGAGACATGGTTGCGACCGCC---------------------
--CCACTCTTCGATTTCCGTTTCCCTCGTCTCCGCCGCGGCAGCCGCCTCGCCTCGATTCTAAGGCTTGGCGGACCTTCG
CTCGTGTCTAAGTTTTGTAGTACTATTGCA------TTGCGGTGCATGTCAACGTCAGGTGAGGGCCTTGTTTCAAGGTA
CTTTGGGCTAAATAGCGTTTTACTGTGTGGGCGTTGTTGGGCCGGGCT--------------------------------
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-------------------TTAGAGCAACTCCAACGCGATGACCCAAATGGACACATGCTTTGTCCGCCTATTGTTTGTT
T
>chr3A_2
-TATGTAGAGTCGCAAAAACTGGGAATTGATCAAATACAGGAGCAGGTAGATGGCAATGGTAGTTTTACAAACCCAATGA
CACTTGCTTGAGCTACAAATTATAAGTTGGAAACCGATAAGATTAAAACTTAGTGAACCGAGTATTTCAGAACATCAATG
TCACTTAGCAGTGTACTCTTAGTGTTGTCCTGTACTCGAAGTTGATCATGTATTCCTTTAATATATGCCCACGAGGCGCA
GATAA-ACATCAACAATTCCACAATCTCCCCCTCTATTCTTTGTACGGACGTGCTTTTCTTTTGCTTTTCTTTGTGAA-T
GGATAGACGCGCTTTGGGAAATTTACCGATCGACATGCTA---CTTATTACCGTGCGCTGGACCGCT-------------
------------GGTCACCGCCGTGTATCTTATCGGGGTCACTCACGGTCGGGCCGCGCTTTCGCTTTACGCCGGAAACG
GCAAGTTTCCACGGCCCGGAAGGAGGCGCGGTGACCCAACCACTTCCCAGACCGGCAACGCAGCCGCCGCTTTTGTTTTC
TTCCACGCGCACCGCCGCAGAGGATCGGTGACCGGCTTGCTGCT---TTC----CGGTCGGGCGTGACGGGCGGACCTTT
CACGGTATACTATCCATCA-------------------------------------------------------------
------------------------CTAGTCGCCGGCGAAACTTCCTGGAAT----------TT----------TCGTCTG
TACGGCGGCGCGTGGCCACGGACTATCACT--------------AGAGGAG-----AGGAGAGCACCACGG---------
--------------------------------------------------------------------------------
-------------------------------------------ACTG----------------ACTGACTTGCTGCTCGA
TCTCTTCTTCTTCTACCTAGCTTGGCTTCGGCGTCGATCACCAGTCCCCGCGTTCCGAGCCAAGAGAGAAGATGGGCCGC
GGGAGGACGGAGATGAAGAGGATCCACAACGACGTGTCGCGCCGGGCCACCTTCGGCAAGCGCCGCCGCGGCCTGCTCAA
GAAGGCGGGCGAGCTCGCCGTGCTCTGCGGCGTGGACCTCGGCCTCCTCGTCTTCGACGACGGCGGCGCCGGCAAGCTGT
TCGACTACTGCAGCCCCAGCACAAGGTCCGTTCTCCGTCCGTTCCGTCACGCGCTAGTCGA-------------------
--------------------------------------------------------------------------------
----------------------GACAAGCGAGATTCTGCATTATGGTTTTGATGATCATG----CCGATTACTGAATCTG
CATCCCTTGCAAGT--------GCCATCTTTGGCATCGTCCTAGCCT------------GCCGCAGTATTGGCAATTGGC
ATGCTCGAATTGTGTTTTGTTTGTGATCAAGTTAGCCAGATGATGCTTTCTAATTTGGCTCTGCTTTTAATCTTCTGCTC
GGATTCAGATGCTTATGTTCATATTCAGTGTACAATATTACTATAGTTGTGACATATTTATACTTCACCTGTCAATGTTA
AGCTGGAGCGAGCTAATTGAGCGCTACGAGAGCATCACCAACCACAAGTTCCAGTTCCAGTTCCAGTTCCAGGGGATAGA
TCATGATGATGATGATCAGGTCAATAAACA-----AACACATCCAGTCATGTACAACATACAGTACATACACACA-----
----------------T--TTGTACACTCAGAGTTAACTGCATGCTTGCCTTTCTGATTGATCTATGCGATTCTTCGCAC
ACAGCAACA---GTTGGCGGAT------------CTGAGGCGTGAGCGTGACCGTCTCGAGGCCAGCGTGAGGAGGCAAA
CCGGAGAAGATCTGCCATTCGCCGCGACGGCGGCCGAACTGGACGATCTGGAGCAGCGGCTGGAGTGCGTGCTGGGTGAA
GTCCGTGAAATGAAGGTACACACA--TCCT---ACACT---GCACACAATTCTGTGTTGCTCACATGCCCAGTGTTTGAG
TGAGCTGC---ATGACAGTCTCGTGTGTGTG----------------------CAGGATAAGCTGCTGGAGCAGCAGTTG
GACGAGTCATACCACAAGGTAAGTAGCGTAATCCTTTTTAGGAGAACCAAAATCGATTCA----GAGGCATACAAAGCAA
TTTTGCATCCGGAATTGAACTGTGAATGACATTGTGCGTCTGACACGTAGGTGCGCATCTTGCAGGACCAGAACAGCTTC
CTTCGCCGCCTGGTAATTTG------CATCTCTGCTTGCCT------GCTAAGCTGCTATGCA-------TGCTGGCTTC
CTGAATGTGTCTTCACTCTT----TGTCAGATGGGCCAGGAGGGGCAGCAATGTGCTGCTGTGGAGGCATCAGCTGTGGC
GCCGAAGCTACCGGCGCCGGCGCTCGGGGGATCCTTCCCA------GAGGAGGAGGAGTTGACGGCCCTGCGTTTGTGGC
CGCGGCAGCTCCCCGACGTGTAAGGCATATGCCTGAAGCCCAGCCTGCAACTCCGGTGATTAAGGTCGTGGGCATGGACA
CACTACTAGACTACCTTCCTGCAGAAAAAAAGACTGCCTTATTGGTGATCAATCTGCATCCTAACAAGACTGCCTTATTG
TTCTGTTGTTTTGCAGGTCGAAGGGAGATGATAGCCTGACGGAACACAGACGGAGATTATAATTGACGATTAGTTATTAA
GAATCTAGCTTAAACTTACTAGTAGCAGGC------------CTAAGGATCCGACGTATGTTCAGAGAGCATGCATATAT
ACGTTAACAAGTAGCAGACGGACGCCAGTATTTTGCTCCGCACAATTTCCTGTACGACTGTGTGAGCAGCACTCCCAAAT
CCCCATATGTAAGTAGTGTCACGTTGGTTCATATGAATTTTACATCAGTGTTGGAGCTCTCTTTTTTTTTGAAAGAAAGT
GTTGGAGCTCTGACGTGAATGGATTGATCAACATGCATGGGT---ACTACTTCGATTTTTTAGGTATAAATATCGCTAAG
GTTTATTAGTCAACC--------ATAGCTTCCTTCTTCCGTGCAGCCTTGCCACGAGAGATGGAGCGTTGTGTGCCTGCT
TGCCTGGTGCTGGGCTA-------------ACAGGCCCTGCAAGTTACACCAAATTGGATGCGCAGCGCAGCTAGGGTTC
TTCGCTAGAGAATGTGCCAATATTAACCCAAACTGGAAAATTACAAAAGCTATTCAAACAAAAAATTGGAGGGGGGAGTT
CATGTTGCTTCGCTGAACTTGTTCTAGAGTTTTAGATAGACTTTTAGGTAGTAAAACTTAAATTTCGATTTGGTTCAGTT
TACATCCAAACTTTGTAAACCGTTCACCTTG-------------------------------------------------
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----------------------------------------------------------------------------GCGA
ATTCAGCAAGCTAGTCGCACTCCATACTTGAGTTGCCTGTGTGCATGTGGCTGCGGGTTGCCTGCCTGCTTCACGACGGC
CGGCTTGGATCGATCACGCCTTATTTCCAGGAAGTCGTCCATTGTGATAGTTGATAAACTCGGGACGAGACTTGAGGAAC
TGGTAGAACTCCTCGTCCGGCGGAGATACTCCACGTAGCCTCCCCCGCTCTTGAGGTGTCAAGTCTGCAAAAAAGCCTAA
TTTTGGGGAGCCTTTCTTTCGTGCAGACGAGGA-----GTGGTGTGAGTCGAGTTCGTCCACTCTGGCCTTGAACAGTTG
AAACCGCATGGCCTTCTCTTCCTCATCGAAGTATGTTTTGTTGTACTTCTTCATCCAGTCCTCGAACTCCGCCTCGGCGC
CTCCATGTCCCGCTCTTCCTTCAAGGGC-----------------------------CTTCCGATCGTCGCACACATCGT
CGCTGATGATCTTTCCGGGCTTCATGTCGGTCACCTCCTTCCTGGCCTTCTCGTCCCCAATCACCTTGCCAGCTGACTCA
TATATGCCTTTCTTGAGATACAGAGACGCCAATCCAGCAGATGACGCAGCCGCGGCTACAACAGCGCCACCAACGGCGAG
GCTCCTCGAGCAGAGGAGAAAGCTTGCCGGCCTCCCCGCACCCGATTCTCGGATGGCCGGCGCTTGTGCCTGCGCGCGTG
GCGAGGACCTCCGTGTGAGGAGCGAACCGAGGGCCCGGAGAGACATGGTTGCGACCGCC---------------------
--CCCCTCTTCGATTTCCTTTTCC-TTGTCTCCGCCGCGGCAGCCGCCTCGCCTCGATTCTAGGGTTTAGCAGACCTTCG
CACGTGTCCGGAG--TGTTGTACTATTGCATTGCGA---------ATGTCAACCTCAGAGCATCTACGCACACTCCGCGC
GCTAAAATTCGGATTTTTTTATGCACCAGCCAGCTCTAGCAAAAGCTATAAAATAGTACGCGCGTAAAAAAAGGTTCGAA
CACGTGCTAAAATGCACTATCACATGCTGCAAATTTGGAACGCCGGATTACGCACGCTTCACAATTTGCACTGCGTGTTT
TTTTGACACGCGTTTTTAGGCATCTGATAAATCAATGTTGGATCCCGCACACAAACTATTTTGGCGTGCAAAACTTTTGT
ACACCTGTTGAAGATGCTCTTAGAGCAACTCCAACGCGATGACCCAAACGGACGCGCGCTTTGTCCG-------------
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>chr3B_303
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--------------------------------------------------------------TGCTTTTCTTTGTGAAAT
GGATAGACGCGCTTTGGGAAATTTAACGATCGACAT---AGTACTTATTACCGT--------------GCGCTGGTCACG
CAGAAACACAACGGTCACCGCGGTGTATCTTATCGGGGTCACTCACTGTCGGGCCGCGCTTTCGCTTTACGCCGGAAATG
GCAAGTTTCT-CGGCACGGAAGGAGGCGCGGTGACCCAACCACTTCCCAGTCCGGCAACGCAGCCGCCGCTTTTGTTTTC
TTCCACGCGCACCGCAGGAGAGGATCGGTGAGTGGCT---TGCT---TTC----CGGTCGGCTGTGACGGGCGGACCGGT
CATCGTCTCACCTGAACTGCTACTGCTACTGCTACAGTCACACGGTACACTGGAAGGGGCCGGGATCGCTGCCTCCTGGA
AGCAGCGGGGTGGTC--AAAAGCTCTAGTCGCCGGCGAAACTTCCCGGAAT----------TTGCACTACATTTCGACTG
TACGGCGGCGCGTGGCCACGGACTATCACT--------------AGAGGAGAGGAGAGGAGAGCACACCCGAGTTCACAG
TTTCAGTCTCAGTTGTTACAGCCTTTGCCCGGAAGGACCAAGAAGAAGAAGAACAGTATACGTGCCACACAAGGTACATA
C-AATGCTTCTCCTGCTACGAGTCCCCGCGTTCTCTTCTTCTTCTTCCAGCACCATGCATGGAACTGACCTGCTGCTCGA
TCTCTTCTTCTTCCAGCTAGCTCGTCGTCGGCGTCGATCGC---TCCCCGCGTTCCGAGCCA--AGAGAAGATGGGCCGC
GGGAGGACGGAGATGAAGAGGATCCACAACGACGTGTCGCGCCGGGCCACCTTCGGCAAGCGCCGCCGCGGCCTGCTGAA
GAAGGCGCGTGAGCTCGCCGTGCTCTGCGGCGTCGATCTCGGCCTCCTCGTCTTCGACGATGACGGCGCCGGCAAGCTGT
TCGACTACTGCAGCCCCAACACAAGGTCCGTCCTCCGTCCTTTCCGTCACGCGCTG------------------------
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------------------ACCGGCCATCTTTGGCATCGTCCTAGCCA------------GCCGCAGTATTGGCAATTGGC
ATGCTCGAATTGTGTTTTG----TGATCAAGTTAGACAGATGATGCTTTCGAATTTAGCTCTGATTTTAATCTTCTGCTC
AGATTCAGATGCTTATGCTCATATTTAGTGTACAATATACTATTAGTTGTGACATGTTTATACCTGACTTGTCATTGTTA
AGCTGGAGCGAGCTAATCGAGCGCTACGAGAGCATCACCAACCA------CAAGTTCCAGTTCC------AGGGGATAAA
TCATGTTGATG---ATCAGGTCAACAAACA-----AACACCTCCAGTCATGTACAACATACA-----TACACACA-----
----------------T--TT--------------AACTGCATGCTTGCATGTCTGATTGATCTATGTGATTCTTTGCAC
ACAGCAGCAACCGTTGGCGGATATCATCGCAGGGCTGAGGCGTGAGCATGACCGTCTGGAGGTCAGCGTGAGGAGGCAGA
CCGGAGAAGACCTGCCATCCGCCGCGACGGCGGCGGAACTCGATGATCTGGAGCAGCGACTGGAGCGCGTGCTGGGTGAA
GTTCGTGAAATGAAGGTACACACG--TGCTGCAGCACT---GCACAAAATTCTGTGTCGCTCACGTGCCCAGTGTTTGAG
TGAACTGCAATATGACATTCTCGTGTGTGTG----------------------CAGGACAAGCCGCTGGAGCAACAGTTG
GACGAATCATACCACAAGGTAATTGTAATC-------TTAGGAGAACCAAAATCGATTCA----GAGGCACACAAAGCAA
TTTTTCATCCGGAATTTAACTGTGAATGGCATTGTGCATCTGACACGTAGGTGCACACCTTGGAGGACCAGAACAGCTTC
CTTCGCCGCCTGGTAATTCG------CATCGCGCTGCC----TGCCTGCTAAGCTGCTATTGTGGTTGTGTACTGGCTTC
CTGAATGTGTCTTCACTCTTAATTTGTCAGATGGGCGAGGAGGGGCAGCAGCGTGCTGCTGTGGAGGCGTCAGCTGTGGC
GCCGAAGCTACCGGCGACGGCGTTCGGGGGATCCTTCCCGGAGGTGGAGGAGGAGGAATTGACAGCGCTACGGCTGTGGC
CGCGGCAGCTCCCCGACGTGTAAGGCATAGGCCTGAAGCCCAGCCTGCACTCT---------------------------
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>chr3D_424
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-------------------------------ATCGGGGTCACTCACGGTCGGGCAACGCTTTCGCTTTACGCCGGAAACG
GCAAGTTTCCACGGCCCGGAAGGAGGCGCGGTGACCCAACCACGTCCCAGACCGGCAACGCAGCCGCCGCTTTTGTTTTC
TTCCACGCGCACCGCAGCAGAGGATCGGTGACTGGCT---TGCTGCTTTCCGGTCGGTCGGGCGTGACGGGCGGACCTTT
CACAG--TACTATCCATCA-------------------------------------------------------------
------------------------CTAGTCGCCGGCGAAACTTCCTGGAAT----------TT----------TCGTCTG
TACGGCGGCACGTGGCCATCCGCAGGCCATCACCAGAGGAGATGAGAGGAGAGGAGAGGAGAGCACACCCGAGTTCACAG
TTTCAGTCTCAGTTGTTACAAACTTAG-----------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------CCCCGCGTCCCAAGCCAAGAGAGAAGATGGGCCGC
GGGAGGACGGAGATGAAGAGGATCCACAACGACGTGTCGCGCCGGGCCACCTTCGGCAAGCGCCGCCGCGGCCTGCTCAA
GAAGGCGCGCGAGCTCGCCGTGCTCTGCGGCGTGGACCACGGCCTCCTCGTCTTCGACGACGGCGGCGCCGGCAAGCTGT
TCGACTAGTGCGCCCCCAACACAAGGTCCGTCCTCCGCCCGTTCCGTCACGCGCTAACCCATTTGGATTTGCTTCTTCGT
ACGTACGCCCTATCTAG---------------------------------------------------------------
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----------------------------------------CTATTGTTGTGACATAATTATACTTGACTTGCCATTGTTA
AGCTGGAGCGAGCTAATTGAGCGCTACGAGAGCATCACCAAACA------CCAGTTCCAGTTCCAGGGCCAGGGGATACA
TCATGATGATC---ATCAGGTCAATAAACA-----AACACATCCAGTCATGTACAACATACA-----TACATACATACAT
TTGTACACTCAAGAGTTAGTT--------------AACTGCATGCTTGCCT-TCTGATTGATCTATGCGATTCTTTGCAC
ACAGCAGCAACCGTTGGCCGATATCATCGCAGGGCTGAGGTGTGAGCATGACCGTCTTGAGGCCAGCATGAGGAGGCAGA
CCGGAGAAGACCTGCCATCCGACGCGACGGCCGCGGAACTCGACGATCTGGAGCAGCGGCTGGAGTTCATGCTGAGCAAA
GTCCGTGAAATGCAGGTACACACG--TGCT---GCAGCACCGCACAAAATTCTGTGGTGCTCACATGCTCAGTGTTTGAG
TGAACTCCATGACATAAC--------------------------------------------------------------
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GAATCTAGCTTAAACTTACTAGTAGCAGGCCAGTAGTGAGGGCTAAGGACCCGGCCTATGTTCAGACGAC------ATAT
ACGTCAACAAGTAGCAGAG----GCCAGTATTTTGCTCCCCACAATTTCCTGTGTGACATA-------------------
-------------TAGTATCATGTTGGTTCATGTGAATTTACTGCAGTGTTTCTTTAACATC---------------AGT
GTTGAAACTCTGACGTGAATGGATTGATCAAAACATGGGTACTGCACTACTATGATTTTTTTAGGC-AAATATCGCCAAG
CTTTATTAGTCAACCTGTCAACCATTGCTTCCTTCTTCCTTGTGGCCTTGTCGAGCATTGTGTCCCGGGCTC--CCGGCT
GGCCTGGTGCTGCACCAAAACAGGTGTCGTACAGGCCTTGCAAGTCACACCAAATTCGATGCGCAGCTAGG---------
-----------------------------------------------------------------------------GTT
CATGTTGCTTCGCTGAACTTGTTCTAGAGTTTTAGA----CTTTTAGGTAAC--AACTTAAACTTTGATTTGGTTCAGTT
TACC-CCTAACTTTGGAAACCGTTCACTTTACAATCATTCTTCTCCTATAACCGGTTTAGACATCTTTGACTCCGGTCAT
TTCTAGTTTTGTATAAGTTCTATAGAAAGATAATTGGTAGTGGACAGAACAAGATTCTGGAAGGTGTGTGTGGTTAGAAG
AGGTACCTTTTTGTATGAGATTTTTCATACTATATGGATTGAATTTTATGTGTCATACTTGTCAAAGGCACACCCTCTTG
CAATCTGATGTAGATGGAAGATCCAAGGAAACTATTTGCAAATACTAGCTAAATATCCATTTGTTGCTTTCTAAATACTA
GCAAACGTCTGTTGTGTGTTGTTTATAGGCGAGGCAGATGGAGGGTAAAAGCTTTGCCGAGTTTCCCTTAGTGTGGAAAC
TCGGCAAAGGTTTCCCCATGTCACTTGCATGGTCCCGTGTGGGTCCCATTGATCAGGTGTTTGCCTAGTTTCTTTTGCCT
GACGCTCGGCAAATATTAGACTTTACCAAGTTTCATCTTATCGCCAAATTTATTTCCACAACACTGGGCAATCAGTCTTC
TTTTCCGAGTTTCTCATCATTACTAAGTTTTTTTTAACTTAGTACTACTCGGCAAACGGGTAACATTGCTGAGCTTCCAG
TGAAAAGCGCTCGGCAAAAAGTTTGGAACTAGGCGTCTTCGGCGATTTCAGTAGTGCTAGAAATAAAGAAACAATCATAT
GCATCAGATCTCTCGCAACTCATACTCCAAGACATTTAATTTAACATAGATATGCTTAATTCTTGACTTGGCCTAAAAAC
AATTGATTTAGAAACAATAATACATATGCTGCTAATAAGATAATTTCATTATAAACTATCAAATTGTGTTCCGACACTGT
TAAGGAAGTTTCAACTATATATAATGATATTATCTTTAAATACAAAGACATATTTTGAATGTCAAAAATATAGATTTTAA
AGTACAAAATTATAAAGATAACTAGCCGTAGCTAAATGCGCGGGTAACCCCACTGGTTTGCATTGAACGTGTCTACGCAT
GTTCATGTCTAGACTATGGAGTCCTTTCTTTTTGAGCAAATATAATATCGTTGTTTAGTTTCAGCACATGATTCAGGTTA
ACATATGGCAAACTTAAAGGAGCCCAAGCTTTCTAATTTCAACTTACACGAGGTTCGTTACCATTGCATTAGATAGGAGT
ATTAAGTAAGCAGGCACCAATCTAGTTCTAGTCCATAACCAGGCAGAAACTTCAAACGTGGGTACTCGATCGGCCAGCGA
ATTCAGCAAGCTAGTCACATTCCATACTTGAGCTGCCTGTG----TGTGGCTGCGGGTTGCCTGCCTGCTTCACGACGGC
CGGCTTGGATCGATCACGCCTTATTTCCAGGAAGTCGTCCATTGTGATAGTTGATAAACTCGGGACGAGACTTGAGGAAC
TCGTAGAACTCCTCGTCCGGCGGAGATACTCCACGTAGCCTCGCCTGCTCTTGAGGTGTAAAGTCTACAAAAAAGCCGTA
TTT------------CTTTCGTGCAGACGAGGTGTGGTGTGGTGTGAGTCGAGTTCCTCGACTCTGGCCTTGAACAATTG
AAACCGCATGGCCTTCTCTTCCTCATCGAAGTATGTTTTGTTGTACTTCTTCATCCAGTCCTCGAACTCCGCCT------
--CCATGTCCCGCTGTTCCCG-------------------------------------------TCGTCGCGCGCCTCGT
CGCTGATGACCTTTCCGGGCTTCATGTCAGTCACCTCCTTCCCGGCCTTCTCGTCCCCAATCACCTTGCCAACAGACGCA
TCTGTGTCTTTCTTGAGATACAGAAACGCCAGTCCACCGGATGACGCAGCCGCGGCTATAGCGGCGCCACCGACGGCGAG
GCTCCTCCAGGAGTGGAGAAAGCGTGACGGCCTCCCAGCAGCCGATCCTCGGGTCCCCGGCGCTTGTGCCTGCGCGCGTG
GCGAGAACCTCCGTGTGAGGAGCGAACCGAGGGCCCGGAGAGACATGGTTGCGAGTTGCGACCGATCCCTCTTCCTTCGC
CTCCCCGATTCGATTTCCTTTTCCCTCGTCTCCGCCGTGGCCGCCGCCTCGCCTCGATTCTAGGGCTTGACGGACTTTCG
CTCGTGTCT-----------------------------------------------------------------------
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>chr3A_424
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-------------------------------ATCGGAGTCACTCACGGTCGGGCAACGCTTTCGCTTTACGCCGGAAACG
GCAAGTTTCCGCCACCCGGAAGGAGGCGCGGTGACCCGAGCACTTCCCAGACCGGCAACGCAGCCGCCGCTTTTGTTTTC
TTCCACGCGCACCGCCGCAGAGGATCGGTGACCGGCT---TGCTGCTTTC----CGGTCGGGCGTGACGGGCGGACCTTT
CACGGTATACTATCCATCA-------------------------------------------------------------
------------------------CTAGTCGCCGGCGAAACTTCCTGGAAT----------TT----------TCGTCTG
TACGGCGGCGCGTGGCCACGGACTATCACT--------------AGAGGAG-----AGGAGAGCACCACGG---------
--------------------------------------------------------------------------------
-------------------------------------------ACTG----------------ACTGACTTGCTGCTCGA
TCTCTTCTTCTTCTACCTAGCTTGGCTTCGGCGTCGATCACCAGTCCCCGCGTTCCGAGCCAAGAGAGAAGATGGGCCGC
GGGAGGACGGAGATGAAGAGGATCCACAACGACGTGTCGCGCCGGGCCACCTTCGGCAAGCGCCGCCGCGGCCTGCTCAA
GAAGGCGGGCGAGCTCGCCGTGCTCTGCGGCGTGGACCTCGGCCTCCTCGTCTTCGACGACGGCGGCGCCGGCAAGCTGT
TCGACTACTGCAGCCCCAGCACAAGGTCCGTTCTCCGTCCGTTCCGTCACGCGCTAGTCGA-------------------
--------------------------------------------------------------------------------
----------------------GACAAGCGAGATTCTGCATTATGGTTTTGATGATCATG----CCGATTACTGAATCTG
CATCCCTTGCAAGT--------GCCATCTTTGGCATCGTCCTAGCCT------------GCCGCAGTATTGGCAATTGGC
ATGCTCGAATTGTGTTTTGTTTGTGATCAAGTTAGCCAGATGATGCTTTCGAATTTGGCTCTGATTTTAATCTTCTGCTC
GGATTCAGATGCTTATGTTCATATTCAGTGTACAATATTACTATAGTTGTGACATATTTATACTTCACCTGTCAATGTTA
AGCTGGAGCGAGCTAATTGAGCGCTACGAGAGCATCACCAACCACAAGTTCCAGTTCCAGTTCCAGTTCCAGGGGATAGA
TCATGATGATGATGATCAGGTCAATAAACA-----AACACATCCAGTCATGTACAACATACAGTACACACACACA-----
----------------T--TTGTACACTCAGAGTTAACTGCATGCTTGCCTTTCTGATTGATCTATGCGATTCTTCGCAC
ACAGCAAC---CGTTGGCGGAT------------CTGAGGCGTGAGCGTGACCGTCTCGAGGCCAGCGTGAGGAGGCAAA
CCGGAGAAGATCTGCCATTCGCCGCGACGGCGGCCGAACTGGACGATCTGGAGCAGCGGCTGGAGTGCGTGCTGGGCGAA
GTCCGTGAAATGAAGGTACACACA--TCCT---ACACT---GCACACAATTCTGTGTTGCTCACATGCCCAGTGTTTGAG
TGAGCTGC---ATGACAGTCTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAGGACAAGCTGCTGGAGCAGCAGTTG
GCCGAATCATACCACAAGGTAAGCGTAATC-------CTAGGAGAACCAAAATCAATTCAATCAGAGGCACACAC-GCAA
ATTTTCATCTGGAAACTAACTGTGGATGACATTGCACATATGACACGTAGGTGCACATCTTGGAGGACCAGAACAGCTAC
CTTCGCCGCATGGTAATTTG------CATCGCTGCCTGCCTATGTCTGCTGAGCTGCTATGCATACT---TACTGACTTC
CTGAATGTGTTTTCACTCTT----TGTCAGATGGGCGAGGAGGGGCAGCAACGTGCTGCTGTGGAGGCGTCATCGGTTGC
GCCAAAGCTACCGGCGATGGCGTTCGGGGGATCCTTCCCGGAGGTGGAGGAGGAGGAATTGACGACACTGCGGCTGTGGC
CGCGGCAGCTCCCCGATGTGTAAGGCATAGGCCTCAAGCCCAGCCTGC--------------------------------
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>chr3B_2789
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--------------------CCTCATCAAAGTATGTTTTATTGTACTTCTTCATCCAGTCCTCGAACTCCGCGT------
--CCATGTCCCGCTGTTCCTTCAGGGTCCCGCTGCCACCAGTCGCCTCATGTCGGGCCTTCCGATCGTTGCACGCCTCGT
CGCTGATGATTTTTCCGGGCTTCGTGACAGTTACCT---------CCTTCTCGTCCCCAATCACCTTGCAAGCTGACTCA
TCTGTGTCTTTCTTGACATACAGAAACGCGAATCCACCAGATGTCGCAGCCGTGGCTACAACAGCGCCACCAACGGCGAG
GCTCCTCCAGGAGTGGAGAAAGCGTGCCGGCCTCCCCGCAGCCGACCCTCGGGTTCCCAGCGCTTGTGCGTGCGCGCGTG
GCGACAACCTCCGTGTGAGGAGCGAACCGAGGGCCCAGAGAGACATGGTTGCGACCG-C---------------------
--CCCCTCTTCGATTTCCTTTTCCCTTGTCTCCGCCGCGGCAGCCGCCTGGCCTCGATTCTAGGGCTTGATGGACCTTCG
CTCGTGTCTAGAG--TCTTGTGCTACTGCATTGCGGTTGCGGTGCATGCCAACGTCGGGCGAGGGCCTTTTTTCACGGTT
CTTCGG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-
>SNPs
S-----------------------------------------------------------S-------------------
----------------------------------S-S---------------------S-S--------S---S------
------------------S----S-----S------SS---------S----S-SS------------------------
S----S-----------------S-----------S----------S---------------------------------
----S--------------------------------------------------------------S------------
--------------------------------------------------------------------------------
-----------S---------------------------S----------------------------------------
--------------------------------------------------------------------------------
-S------S-S----S-S------------------------------------S----S---------------S----
------S----S---SS-------S---------S----S-----------SSSSSSSSSS-------------------
--------------------------------------------------------------------------------
-----------------------------S-----------------------------------------------S-S
SS-------------------SSSSS-S-S--S-SSSSSSSSS--S----------------------------------
--S-------------------------------------------------------------------------S---
-------------------S------S-----S-----S--S--------------------------------------
--------S------------S----------------------------------------------------------
----------------S-------------S---------------------SSS----------------S----SSS-
-SS-SSSSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS---------S-S---------------------S---SSSSS------------S---
-----S----S---SSSS--------------S------------S-SSSSSSSSSSSS---S-----------------
------------S----------------------S-------------S---------------S--------------
-----------------------------S----------------------------------------------S---
--------------------------------------------------------------------------------
------------------------------SSSSS------------------------S------------S-------
------------------------------------------------------------S-------------------
--------------S-------------------------------S------S-----------------S--------
--------S-----S-----S-S-----------------------S---------------------------------
----------S-------------SS-------------------S----------------------------------
----------------S---------S--------------------------S--------S-----------------
-S-------S----------------S-----------------------------------------------------
-------------------S------------------------------------------------------------
------------------SSSSSSSS-----------------------------------S------------------
-----------------------------------------------------------------------S------S-
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--------------------------S---------S--------------------S----------------------
S-------------------------------------------------------------------------------
-------------------S-SS---------------------------------------------------------
------------------------S-------------------------------------------------------
----------------------------S----------------------S-S---S--------S-------------
--------------------------------------------------------------------------------
--S----------------------------------------------------S------------------------
-S------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----S-------------S-------------------------------------------S-----------------
----------SSSSS---S----------------------------------------S---------S-----S---S
---S--SS-SSSSSSSS---SSSSSSSS-SSS-S-S-S-SSSSS-SSS--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------S----S-SS----------SSSSSSSSSSSSS
S
>forward_1043
--------------------------------------------------------------------------------
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---------------------------------------------------------------ACTGACTTGCTGCTCGA
TCC-----------------------------------------------------------------------------
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>reverse_2171
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----------CGAAGGTACACACACGTCCT--------------------------------------------------
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>forward_1162
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----------------------TCCAGAACGATGTGTCACGG--------------------------------------
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>reverse_5142
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---------------------CACAGACGAGGAGTGGTGTG---------------------------------------
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-
