Multiple sequence alignment - TraesCS3D01G083700
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3D01G083700 | chr3D | 100.000 | 3640 | 0 | 0 | 1 | 3640 | 42491547 | 42487908 | 0.000000e+00 | 6722.0 |
1 | TraesCS3D01G083700 | chr3D | 90.033 | 301 | 22 | 8 | 3051 | 3349 | 41778125 | 41778419 | 2.050000e-102 | 383.0 |
2 | TraesCS3D01G083700 | chr3D | 83.654 | 104 | 14 | 2 | 597 | 698 | 41777627 | 41777729 | 1.080000e-15 | 95.3 |
3 | TraesCS3D01G083700 | chr3B | 84.959 | 2327 | 163 | 102 | 520 | 2763 | 66182607 | 66180385 | 0.000000e+00 | 2185.0 |
4 | TraesCS3D01G083700 | chr3B | 89.344 | 854 | 58 | 15 | 2796 | 3640 | 66180303 | 66179474 | 0.000000e+00 | 1042.0 |
5 | TraesCS3D01G083700 | chr3B | 94.595 | 74 | 2 | 2 | 3052 | 3125 | 66178017 | 66177946 | 2.970000e-21 | 113.0 |
6 | TraesCS3D01G083700 | chr3B | 83.333 | 66 | 6 | 3 | 87 | 152 | 66183632 | 66183572 | 5.080000e-04 | 56.5 |
7 | TraesCS3D01G083700 | chr3A | 91.803 | 854 | 52 | 11 | 2796 | 3640 | 53832040 | 53831196 | 0.000000e+00 | 1173.0 |
8 | TraesCS3D01G083700 | chr3A | 85.887 | 1155 | 94 | 31 | 1669 | 2763 | 53833267 | 53832122 | 0.000000e+00 | 1166.0 |
9 | TraesCS3D01G083700 | chr3A | 86.973 | 783 | 36 | 30 | 695 | 1458 | 53834190 | 53833455 | 0.000000e+00 | 821.0 |
10 | TraesCS3D01G083700 | chr3A | 100.000 | 29 | 0 | 0 | 3516 | 3544 | 53835402 | 53835374 | 2.000000e-03 | 54.7 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3D01G083700 | chr3D | 42487908 | 42491547 | 3639 | True | 6722.000 | 6722 | 100.00000 | 1 | 3640 | 1 | chr3D.!!$R1 | 3639 |
1 | TraesCS3D01G083700 | chr3D | 41777627 | 41778419 | 792 | False | 239.150 | 383 | 86.84350 | 597 | 3349 | 2 | chr3D.!!$F1 | 2752 |
2 | TraesCS3D01G083700 | chr3B | 66177946 | 66183632 | 5686 | True | 849.125 | 2185 | 88.05775 | 87 | 3640 | 4 | chr3B.!!$R1 | 3553 |
3 | TraesCS3D01G083700 | chr3A | 53831196 | 53835402 | 4206 | True | 803.675 | 1173 | 91.16575 | 695 | 3640 | 4 | chr3A.!!$R1 | 2945 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
69 | 70 | 0.031994 | GCCATGCACAAAGGTCGTTT | 59.968 | 50.0 | 0.00 | 0.00 | 0.00 | 3.60 | F |
396 | 1001 | 0.105039 | GGTCTAGCTAGGCATGCGTT | 59.895 | 55.0 | 25.93 | 8.43 | 35.28 | 4.84 | F |
1613 | 2329 | 0.249868 | TCTGTGGTTTCACCTCGCTG | 60.250 | 55.0 | 0.00 | 0.00 | 42.98 | 5.18 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1461 | 2159 | 1.294780 | GAGACAGGCAGAGTGGGTG | 59.705 | 63.158 | 0.0 | 0.0 | 0.00 | 4.61 | R |
2130 | 2944 | 0.033894 | AGCCATCATCATGCCACACA | 60.034 | 50.000 | 0.0 | 0.0 | 0.00 | 3.72 | R |
2659 | 3485 | 0.032130 | ACGGATGGCTAGTGCGTATG | 59.968 | 55.000 | 0.0 | 0.0 | 41.84 | 2.39 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
18 | 19 | 2.526958 | CCCTGCCCCTTTTGTTGTT | 58.473 | 52.632 | 0.00 | 0.00 | 0.00 | 2.83 |
19 | 20 | 1.710816 | CCCTGCCCCTTTTGTTGTTA | 58.289 | 50.000 | 0.00 | 0.00 | 0.00 | 2.41 |
20 | 21 | 2.043227 | CCCTGCCCCTTTTGTTGTTAA | 58.957 | 47.619 | 0.00 | 0.00 | 0.00 | 2.01 |
21 | 22 | 2.224185 | CCCTGCCCCTTTTGTTGTTAAC | 60.224 | 50.000 | 0.00 | 0.00 | 0.00 | 2.01 |
22 | 23 | 2.432510 | CCTGCCCCTTTTGTTGTTAACA | 59.567 | 45.455 | 3.59 | 3.59 | 40.21 | 2.41 |
23 | 24 | 3.070878 | CCTGCCCCTTTTGTTGTTAACAT | 59.929 | 43.478 | 9.56 | 0.00 | 41.79 | 2.71 |
24 | 25 | 4.282195 | CCTGCCCCTTTTGTTGTTAACATA | 59.718 | 41.667 | 9.56 | 0.00 | 41.79 | 2.29 |
26 | 27 | 6.153680 | CCTGCCCCTTTTGTTGTTAACATATA | 59.846 | 38.462 | 9.56 | 0.00 | 41.79 | 0.86 |
27 | 28 | 7.147742 | CCTGCCCCTTTTGTTGTTAACATATAT | 60.148 | 37.037 | 9.56 | 0.00 | 41.79 | 0.86 |
30 | 31 | 9.093970 | GCCCCTTTTGTTGTTAACATATATTTC | 57.906 | 33.333 | 9.56 | 0.00 | 41.79 | 2.17 |
40 | 41 | 8.909708 | TGTTAACATATATTTCTGCACTTTGC | 57.090 | 30.769 | 3.59 | 0.00 | 45.29 | 3.68 |
53 | 54 | 2.891112 | CACTTTGCAACTCTTTTGCCA | 58.109 | 42.857 | 0.00 | 0.00 | 44.32 | 4.92 |
56 | 57 | 1.868469 | TTGCAACTCTTTTGCCATGC | 58.132 | 45.000 | 6.53 | 0.00 | 44.32 | 4.06 |
57 | 58 | 0.751452 | TGCAACTCTTTTGCCATGCA | 59.249 | 45.000 | 6.53 | 0.00 | 44.32 | 3.96 |
58 | 59 | 1.142474 | GCAACTCTTTTGCCATGCAC | 58.858 | 50.000 | 0.00 | 0.00 | 38.71 | 4.57 |
59 | 60 | 1.538634 | GCAACTCTTTTGCCATGCACA | 60.539 | 47.619 | 0.00 | 0.00 | 38.71 | 4.57 |
60 | 61 | 2.823984 | CAACTCTTTTGCCATGCACAA | 58.176 | 42.857 | 0.00 | 0.00 | 38.71 | 3.33 |
61 | 62 | 3.196463 | CAACTCTTTTGCCATGCACAAA | 58.804 | 40.909 | 7.75 | 7.75 | 38.71 | 2.83 |
63 | 64 | 2.224113 | ACTCTTTTGCCATGCACAAAGG | 60.224 | 45.455 | 12.51 | 12.51 | 38.71 | 3.11 |
64 | 65 | 1.761784 | TCTTTTGCCATGCACAAAGGT | 59.238 | 42.857 | 16.06 | 0.00 | 38.71 | 3.50 |
68 | 69 | 1.106351 | TGCCATGCACAAAGGTCGTT | 61.106 | 50.000 | 0.00 | 0.00 | 31.71 | 3.85 |
69 | 70 | 0.031994 | GCCATGCACAAAGGTCGTTT | 59.968 | 50.000 | 0.00 | 0.00 | 0.00 | 3.60 |
79 | 80 | 4.625972 | CAAAGGTCGTTTGTGGTTAAGT | 57.374 | 40.909 | 9.39 | 0.00 | 40.74 | 2.24 |
80 | 81 | 5.738118 | CAAAGGTCGTTTGTGGTTAAGTA | 57.262 | 39.130 | 9.39 | 0.00 | 40.74 | 2.24 |
81 | 82 | 6.308371 | CAAAGGTCGTTTGTGGTTAAGTAT | 57.692 | 37.500 | 9.39 | 0.00 | 40.74 | 2.12 |
82 | 83 | 5.934935 | AAGGTCGTTTGTGGTTAAGTATG | 57.065 | 39.130 | 0.00 | 0.00 | 0.00 | 2.39 |
83 | 84 | 4.964593 | AGGTCGTTTGTGGTTAAGTATGT | 58.035 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
84 | 85 | 5.370679 | AGGTCGTTTGTGGTTAAGTATGTT | 58.629 | 37.500 | 0.00 | 0.00 | 0.00 | 2.71 |
85 | 86 | 5.237779 | AGGTCGTTTGTGGTTAAGTATGTTG | 59.762 | 40.000 | 0.00 | 0.00 | 0.00 | 3.33 |
91 | 92 | 7.259161 | GTTTGTGGTTAAGTATGTTGGTTGAA | 58.741 | 34.615 | 0.00 | 0.00 | 0.00 | 2.69 |
103 | 104 | 7.879160 | AGTATGTTGGTTGAAACGGTCTAAATA | 59.121 | 33.333 | 0.00 | 0.00 | 32.47 | 1.40 |
104 | 105 | 7.696992 | ATGTTGGTTGAAACGGTCTAAATAT | 57.303 | 32.000 | 0.00 | 0.00 | 32.47 | 1.28 |
105 | 106 | 6.904498 | TGTTGGTTGAAACGGTCTAAATATG | 58.096 | 36.000 | 0.00 | 0.00 | 32.47 | 1.78 |
106 | 107 | 6.487331 | TGTTGGTTGAAACGGTCTAAATATGT | 59.513 | 34.615 | 0.00 | 0.00 | 32.47 | 2.29 |
107 | 108 | 7.660617 | TGTTGGTTGAAACGGTCTAAATATGTA | 59.339 | 33.333 | 0.00 | 0.00 | 32.47 | 2.29 |
108 | 109 | 8.671028 | GTTGGTTGAAACGGTCTAAATATGTAT | 58.329 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
109 | 110 | 8.203937 | TGGTTGAAACGGTCTAAATATGTATG | 57.796 | 34.615 | 0.00 | 0.00 | 0.00 | 2.39 |
110 | 111 | 7.130269 | GGTTGAAACGGTCTAAATATGTATGC | 58.870 | 38.462 | 0.00 | 0.00 | 0.00 | 3.14 |
112 | 113 | 8.342634 | GTTGAAACGGTCTAAATATGTATGCAT | 58.657 | 33.333 | 3.79 | 3.79 | 39.03 | 3.96 |
113 | 114 | 7.860613 | TGAAACGGTCTAAATATGTATGCATG | 58.139 | 34.615 | 10.16 | 0.00 | 36.58 | 4.06 |
114 | 115 | 5.862924 | ACGGTCTAAATATGTATGCATGC | 57.137 | 39.130 | 11.82 | 11.82 | 36.58 | 4.06 |
115 | 116 | 5.304778 | ACGGTCTAAATATGTATGCATGCA | 58.695 | 37.500 | 25.04 | 25.04 | 36.58 | 3.96 |
116 | 117 | 5.939883 | ACGGTCTAAATATGTATGCATGCAT | 59.060 | 36.000 | 33.92 | 33.92 | 40.19 | 3.96 |
117 | 118 | 6.128200 | ACGGTCTAAATATGTATGCATGCATG | 60.128 | 38.462 | 37.43 | 22.70 | 37.82 | 4.06 |
119 | 120 | 7.064490 | CGGTCTAAATATGTATGCATGCATGTA | 59.936 | 37.037 | 37.43 | 26.86 | 37.82 | 2.29 |
120 | 121 | 8.896744 | GGTCTAAATATGTATGCATGCATGTAT | 58.103 | 33.333 | 37.43 | 30.35 | 37.82 | 2.29 |
121 | 122 | 9.712359 | GTCTAAATATGTATGCATGCATGTATG | 57.288 | 33.333 | 37.43 | 18.42 | 37.82 | 2.39 |
123 | 124 | 9.498307 | CTAAATATGTATGCATGCATGTATGTG | 57.502 | 33.333 | 37.43 | 20.76 | 37.82 | 3.21 |
152 | 153 | 6.902948 | GCTTTTGTTTCGCGTGTGATTATATA | 59.097 | 34.615 | 5.77 | 0.00 | 0.00 | 0.86 |
154 | 155 | 8.760703 | TTTTGTTTCGCGTGTGATTATATATG | 57.239 | 30.769 | 5.77 | 0.00 | 0.00 | 1.78 |
155 | 156 | 7.471657 | TTGTTTCGCGTGTGATTATATATGT | 57.528 | 32.000 | 5.77 | 0.00 | 0.00 | 2.29 |
156 | 157 | 7.100829 | TGTTTCGCGTGTGATTATATATGTC | 57.899 | 36.000 | 5.77 | 0.00 | 0.00 | 3.06 |
158 | 159 | 3.849708 | TCGCGTGTGATTATATATGTCGC | 59.150 | 43.478 | 5.77 | 0.00 | 38.20 | 5.19 |
161 | 162 | 4.789629 | GCGTGTGATTATATATGTCGCGTA | 59.210 | 41.667 | 5.77 | 0.00 | 32.68 | 4.42 |
162 | 163 | 5.454554 | GCGTGTGATTATATATGTCGCGTAT | 59.545 | 40.000 | 5.77 | 4.84 | 32.68 | 3.06 |
163 | 164 | 6.557891 | GCGTGTGATTATATATGTCGCGTATG | 60.558 | 42.308 | 5.77 | 0.00 | 32.68 | 2.39 |
166 | 167 | 7.272731 | GTGTGATTATATATGTCGCGTATGTGT | 59.727 | 37.037 | 5.77 | 1.87 | 0.00 | 3.72 |
170 | 171 | 7.673810 | TTATATATGTCGCGTATGTGTATGC | 57.326 | 36.000 | 5.77 | 0.00 | 39.06 | 3.14 |
171 | 172 | 2.509052 | ATGTCGCGTATGTGTATGCT | 57.491 | 45.000 | 5.77 | 0.00 | 40.05 | 3.79 |
173 | 174 | 2.612604 | TGTCGCGTATGTGTATGCTTT | 58.387 | 42.857 | 5.77 | 0.00 | 40.05 | 3.51 |
174 | 175 | 2.997303 | TGTCGCGTATGTGTATGCTTTT | 59.003 | 40.909 | 5.77 | 0.00 | 40.05 | 2.27 |
175 | 176 | 3.181525 | TGTCGCGTATGTGTATGCTTTTG | 60.182 | 43.478 | 5.77 | 0.00 | 40.05 | 2.44 |
176 | 177 | 2.997303 | TCGCGTATGTGTATGCTTTTGT | 59.003 | 40.909 | 5.77 | 0.00 | 40.05 | 2.83 |
177 | 178 | 3.433957 | TCGCGTATGTGTATGCTTTTGTT | 59.566 | 39.130 | 5.77 | 0.00 | 40.05 | 2.83 |
178 | 179 | 4.083749 | TCGCGTATGTGTATGCTTTTGTTT | 60.084 | 37.500 | 5.77 | 0.00 | 40.05 | 2.83 |
179 | 180 | 4.259734 | CGCGTATGTGTATGCTTTTGTTTC | 59.740 | 41.667 | 0.00 | 0.00 | 40.05 | 2.78 |
180 | 181 | 4.259734 | GCGTATGTGTATGCTTTTGTTTCG | 59.740 | 41.667 | 0.00 | 0.00 | 39.30 | 3.46 |
181 | 182 | 4.259734 | CGTATGTGTATGCTTTTGTTTCGC | 59.740 | 41.667 | 0.00 | 0.00 | 0.00 | 4.70 |
183 | 184 | 1.382088 | GTGTATGCTTTTGTTTCGCGC | 59.618 | 47.619 | 0.00 | 0.00 | 0.00 | 6.86 |
184 | 185 | 0.628289 | GTATGCTTTTGTTTCGCGCG | 59.372 | 50.000 | 26.76 | 26.76 | 0.00 | 6.86 |
186 | 187 | 1.268113 | ATGCTTTTGTTTCGCGCGTG | 61.268 | 50.000 | 30.98 | 14.79 | 0.00 | 5.34 |
187 | 188 | 1.652930 | GCTTTTGTTTCGCGCGTGA | 60.653 | 52.632 | 30.98 | 20.10 | 0.00 | 4.35 |
191 | 192 | 2.220315 | TTTGTTTCGCGCGTGATTAG | 57.780 | 45.000 | 30.98 | 0.00 | 0.00 | 1.73 |
198 | 199 | 2.765918 | TCGCGCGTGATTAGTATATCG | 58.234 | 47.619 | 30.98 | 2.61 | 0.00 | 2.92 |
222 | 224 | 5.119125 | GCATTGTCTAAAGTTTTGGCATGAC | 59.881 | 40.000 | 5.20 | 0.00 | 0.00 | 3.06 |
234 | 236 | 0.253044 | GGCATGACCAACAGCTAGGA | 59.747 | 55.000 | 0.00 | 0.00 | 38.86 | 2.94 |
236 | 238 | 2.216898 | GCATGACCAACAGCTAGGATC | 58.783 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
241 | 243 | 3.055819 | TGACCAACAGCTAGGATCAAGAC | 60.056 | 47.826 | 6.08 | 0.00 | 0.00 | 3.01 |
252 | 254 | 3.079578 | AGGATCAAGACTAACACGTCGA | 58.920 | 45.455 | 0.00 | 0.00 | 38.90 | 4.20 |
253 | 255 | 3.119919 | AGGATCAAGACTAACACGTCGAC | 60.120 | 47.826 | 5.18 | 5.18 | 38.90 | 4.20 |
254 | 256 | 2.305252 | TCAAGACTAACACGTCGACG | 57.695 | 50.000 | 34.58 | 34.58 | 46.33 | 5.12 |
272 | 274 | 2.713011 | ACGTCTTATCGTCGTGCATAC | 58.287 | 47.619 | 0.00 | 0.00 | 40.04 | 2.39 |
273 | 275 | 2.041966 | CGTCTTATCGTCGTGCATACC | 58.958 | 52.381 | 0.00 | 0.00 | 0.00 | 2.73 |
281 | 886 | 2.424246 | TCGTCGTGCATACCTGTGAATA | 59.576 | 45.455 | 0.00 | 0.00 | 0.00 | 1.75 |
286 | 891 | 6.399986 | CGTCGTGCATACCTGTGAATATATTG | 60.400 | 42.308 | 1.78 | 0.00 | 0.00 | 1.90 |
304 | 909 | 0.804364 | TGCTTGGACGAATGTGATGC | 59.196 | 50.000 | 0.00 | 0.00 | 0.00 | 3.91 |
310 | 915 | 1.588404 | GGACGAATGTGATGCGTGTAG | 59.412 | 52.381 | 0.00 | 0.00 | 38.51 | 2.74 |
311 | 916 | 2.526077 | GACGAATGTGATGCGTGTAGA | 58.474 | 47.619 | 0.00 | 0.00 | 38.51 | 2.59 |
324 | 929 | 2.277084 | CGTGTAGACCTAACCAATGGC | 58.723 | 52.381 | 0.00 | 0.00 | 0.00 | 4.40 |
326 | 931 | 3.270877 | GTGTAGACCTAACCAATGGCAG | 58.729 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
335 | 940 | 0.178953 | ACCAATGGCAGTTCCTTGCT | 60.179 | 50.000 | 0.00 | 0.00 | 43.57 | 3.91 |
337 | 942 | 1.250328 | CAATGGCAGTTCCTTGCTGA | 58.750 | 50.000 | 0.00 | 0.00 | 43.57 | 4.26 |
356 | 961 | 2.012673 | GAGTTGCTTGTGGGCTATCAG | 58.987 | 52.381 | 0.00 | 0.00 | 0.00 | 2.90 |
357 | 962 | 0.453390 | GTTGCTTGTGGGCTATCAGC | 59.547 | 55.000 | 0.00 | 0.00 | 41.46 | 4.26 |
358 | 963 | 1.026182 | TTGCTTGTGGGCTATCAGCG | 61.026 | 55.000 | 0.88 | 0.00 | 43.62 | 5.18 |
359 | 964 | 1.450312 | GCTTGTGGGCTATCAGCGT | 60.450 | 57.895 | 0.00 | 0.00 | 43.62 | 5.07 |
360 | 965 | 1.026718 | GCTTGTGGGCTATCAGCGTT | 61.027 | 55.000 | 0.00 | 0.00 | 43.62 | 4.84 |
364 | 969 | 1.153647 | TGGGCTATCAGCGTTCACG | 60.154 | 57.895 | 0.00 | 0.00 | 43.62 | 4.35 |
383 | 988 | 3.121279 | CACGTTCGTTTGACATGGTCTAG | 59.879 | 47.826 | 0.00 | 0.00 | 33.15 | 2.43 |
394 | 999 | 0.319728 | ATGGTCTAGCTAGGCATGCG | 59.680 | 55.000 | 25.93 | 0.00 | 35.28 | 4.73 |
395 | 1000 | 1.043116 | TGGTCTAGCTAGGCATGCGT | 61.043 | 55.000 | 25.93 | 18.09 | 35.28 | 5.24 |
396 | 1001 | 0.105039 | GGTCTAGCTAGGCATGCGTT | 59.895 | 55.000 | 25.93 | 8.43 | 35.28 | 4.84 |
411 | 1021 | 3.634568 | TGCGTTCCTGGTTTTGTATTG | 57.365 | 42.857 | 0.00 | 0.00 | 0.00 | 1.90 |
412 | 1022 | 2.952978 | TGCGTTCCTGGTTTTGTATTGT | 59.047 | 40.909 | 0.00 | 0.00 | 0.00 | 2.71 |
416 | 1026 | 5.051307 | GCGTTCCTGGTTTTGTATTGTTTTC | 60.051 | 40.000 | 0.00 | 0.00 | 0.00 | 2.29 |
417 | 1027 | 6.037098 | CGTTCCTGGTTTTGTATTGTTTTCA | 58.963 | 36.000 | 0.00 | 0.00 | 0.00 | 2.69 |
418 | 1028 | 6.020201 | CGTTCCTGGTTTTGTATTGTTTTCAC | 60.020 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
419 | 1029 | 6.531503 | TCCTGGTTTTGTATTGTTTTCACA | 57.468 | 33.333 | 0.00 | 0.00 | 0.00 | 3.58 |
421 | 1031 | 8.239038 | TCCTGGTTTTGTATTGTTTTCACATA | 57.761 | 30.769 | 0.00 | 0.00 | 31.06 | 2.29 |
422 | 1032 | 8.865090 | TCCTGGTTTTGTATTGTTTTCACATAT | 58.135 | 29.630 | 0.00 | 0.00 | 31.06 | 1.78 |
451 | 1061 | 0.664166 | TGCGTCGTTAGGGTTCGTTC | 60.664 | 55.000 | 0.00 | 0.00 | 0.00 | 3.95 |
472 | 1094 | 2.099263 | CGGCTAGACGAGGAAGAAATGA | 59.901 | 50.000 | 14.40 | 0.00 | 35.47 | 2.57 |
507 | 1129 | 8.926374 | TCCAAGTAATAATAATACCGTCCAAGA | 58.074 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
527 | 1149 | 3.584848 | AGATGGTATAATCTCCCTGTGCC | 59.415 | 47.826 | 0.00 | 0.00 | 30.91 | 5.01 |
552 | 1200 | 3.542676 | ACGGCCAGACGTGTGGAA | 61.543 | 61.111 | 33.99 | 0.00 | 46.64 | 3.53 |
554 | 1202 | 1.671054 | CGGCCAGACGTGTGGAAAT | 60.671 | 57.895 | 33.99 | 0.00 | 40.44 | 2.17 |
557 | 1205 | 1.338769 | GGCCAGACGTGTGGAAATAGT | 60.339 | 52.381 | 33.99 | 0.00 | 40.44 | 2.12 |
575 | 1223 | 9.041354 | GGAAATAGTCCATGTATAATCTCCTCT | 57.959 | 37.037 | 0.00 | 0.00 | 46.97 | 3.69 |
578 | 1226 | 9.474313 | AATAGTCCATGTATAATCTCCTCTCTC | 57.526 | 37.037 | 0.00 | 0.00 | 0.00 | 3.20 |
580 | 1228 | 7.175104 | AGTCCATGTATAATCTCCTCTCTCTC | 58.825 | 42.308 | 0.00 | 0.00 | 0.00 | 3.20 |
582 | 1230 | 7.669722 | GTCCATGTATAATCTCCTCTCTCTCTT | 59.330 | 40.741 | 0.00 | 0.00 | 0.00 | 2.85 |
583 | 1231 | 8.231007 | TCCATGTATAATCTCCTCTCTCTCTTT | 58.769 | 37.037 | 0.00 | 0.00 | 0.00 | 2.52 |
584 | 1232 | 8.869109 | CCATGTATAATCTCCTCTCTCTCTTTT | 58.131 | 37.037 | 0.00 | 0.00 | 0.00 | 2.27 |
706 | 1368 | 4.036734 | CCATAGCACATAAAATCGGCTTGT | 59.963 | 41.667 | 0.00 | 0.00 | 36.10 | 3.16 |
712 | 1374 | 5.348451 | GCACATAAAATCGGCTTGTTTTCAT | 59.652 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
782 | 1452 | 2.746269 | CAAGCCAACACATCAACAAGG | 58.254 | 47.619 | 0.00 | 0.00 | 0.00 | 3.61 |
786 | 1456 | 1.480312 | CCAACACATCAACAAGGGGGA | 60.480 | 52.381 | 0.00 | 0.00 | 0.00 | 4.81 |
787 | 1457 | 1.888512 | CAACACATCAACAAGGGGGAG | 59.111 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
798 | 1470 | 3.839432 | GGGGGAGAGAAGCGGACG | 61.839 | 72.222 | 0.00 | 0.00 | 0.00 | 4.79 |
856 | 1534 | 8.454859 | AGATCTCTCTCTATATCTTCTCCACT | 57.545 | 38.462 | 0.00 | 0.00 | 0.00 | 4.00 |
859 | 1537 | 6.560687 | TCTCTCTCTATATCTTCTCCACTCCA | 59.439 | 42.308 | 0.00 | 0.00 | 0.00 | 3.86 |
861 | 1539 | 5.309638 | TCTCTATATCTTCTCCACTCCACG | 58.690 | 45.833 | 0.00 | 0.00 | 0.00 | 4.94 |
863 | 1541 | 1.112113 | TATCTTCTCCACTCCACGCC | 58.888 | 55.000 | 0.00 | 0.00 | 0.00 | 5.68 |
865 | 1543 | 3.316573 | CTTCTCCACTCCACGCCCC | 62.317 | 68.421 | 0.00 | 0.00 | 0.00 | 5.80 |
919 | 1597 | 1.299468 | CTGCTCCTACGGCTAAGCG | 60.299 | 63.158 | 0.00 | 0.00 | 37.57 | 4.68 |
949 | 1631 | 5.599732 | GAAAGCTAAGCAGATCAGATCAGA | 58.400 | 41.667 | 13.14 | 0.00 | 0.00 | 3.27 |
972 | 1654 | 2.052779 | CTCAGGTGGAGCTGACACA | 58.947 | 57.895 | 17.17 | 0.00 | 40.54 | 3.72 |
973 | 1655 | 0.320247 | CTCAGGTGGAGCTGACACAC | 60.320 | 60.000 | 17.17 | 9.04 | 40.54 | 3.82 |
986 | 1668 | 2.597455 | TGACACACAGACAGAGATCCA | 58.403 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
991 | 1673 | 1.625315 | CACAGACAGAGATCCAACCCA | 59.375 | 52.381 | 0.00 | 0.00 | 0.00 | 4.51 |
1509 | 2224 | 7.430441 | GTCTCCATATCTCTGTTACTTCCTTC | 58.570 | 42.308 | 0.00 | 0.00 | 0.00 | 3.46 |
1512 | 2227 | 8.012957 | TCCATATCTCTGTTACTTCCTTCTTC | 57.987 | 38.462 | 0.00 | 0.00 | 0.00 | 2.87 |
1513 | 2228 | 7.841729 | TCCATATCTCTGTTACTTCCTTCTTCT | 59.158 | 37.037 | 0.00 | 0.00 | 0.00 | 2.85 |
1514 | 2229 | 8.482128 | CCATATCTCTGTTACTTCCTTCTTCTT | 58.518 | 37.037 | 0.00 | 0.00 | 0.00 | 2.52 |
1515 | 2230 | 9.883142 | CATATCTCTGTTACTTCCTTCTTCTTT | 57.117 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
1517 | 2232 | 8.840833 | ATCTCTGTTACTTCCTTCTTCTTTTC | 57.159 | 34.615 | 0.00 | 0.00 | 0.00 | 2.29 |
1518 | 2233 | 7.217906 | TCTCTGTTACTTCCTTCTTCTTTTCC | 58.782 | 38.462 | 0.00 | 0.00 | 0.00 | 3.13 |
1519 | 2234 | 5.989777 | TCTGTTACTTCCTTCTTCTTTTCCG | 59.010 | 40.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1525 | 2240 | 3.674997 | TCCTTCTTCTTTTCCGTGGATG | 58.325 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
1552 | 2268 | 3.444742 | TGGATGGAAATTGTCTGCATCAC | 59.555 | 43.478 | 10.95 | 3.42 | 30.49 | 3.06 |
1606 | 2322 | 2.480419 | CTCAATCCGTCTGTGGTTTCAC | 59.520 | 50.000 | 0.00 | 0.00 | 43.87 | 3.18 |
1607 | 2323 | 1.535462 | CAATCCGTCTGTGGTTTCACC | 59.465 | 52.381 | 0.00 | 0.00 | 42.98 | 4.02 |
1610 | 2326 | 0.944311 | CCGTCTGTGGTTTCACCTCG | 60.944 | 60.000 | 0.00 | 0.00 | 42.98 | 4.63 |
1613 | 2329 | 0.249868 | TCTGTGGTTTCACCTCGCTG | 60.250 | 55.000 | 0.00 | 0.00 | 42.98 | 5.18 |
1615 | 2331 | 0.753867 | TGTGGTTTCACCTCGCTGTA | 59.246 | 50.000 | 0.00 | 0.00 | 42.98 | 2.74 |
1616 | 2332 | 1.145803 | GTGGTTTCACCTCGCTGTAC | 58.854 | 55.000 | 0.00 | 0.00 | 39.58 | 2.90 |
1617 | 2333 | 0.753867 | TGGTTTCACCTCGCTGTACA | 59.246 | 50.000 | 0.00 | 0.00 | 39.58 | 2.90 |
1618 | 2334 | 1.145803 | GGTTTCACCTCGCTGTACAC | 58.854 | 55.000 | 0.00 | 0.00 | 34.73 | 2.90 |
1621 | 2337 | 2.148916 | TTCACCTCGCTGTACACTTG | 57.851 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1726 | 2449 | 4.430137 | TCACATTTTGATGCTCTGCTTC | 57.570 | 40.909 | 0.00 | 0.00 | 34.04 | 3.86 |
1757 | 2501 | 6.534793 | ACAGACTTTGGCTTGTGTTAATTTTG | 59.465 | 34.615 | 0.00 | 0.00 | 0.00 | 2.44 |
1769 | 2513 | 5.124776 | TGTGTTAATTTTGGGCTAATCCTCG | 59.875 | 40.000 | 0.00 | 0.00 | 34.39 | 4.63 |
1804 | 2548 | 3.815401 | AGATTCCTCAACAAAACACCTCG | 59.185 | 43.478 | 0.00 | 0.00 | 0.00 | 4.63 |
1809 | 2553 | 5.556915 | TCCTCAACAAAACACCTCGATAAT | 58.443 | 37.500 | 0.00 | 0.00 | 0.00 | 1.28 |
1822 | 2566 | 3.243873 | CCTCGATAATTCTGTGCTAGCCA | 60.244 | 47.826 | 13.29 | 8.94 | 0.00 | 4.75 |
1834 | 2578 | 5.945784 | TCTGTGCTAGCCAATTTATTCAGTT | 59.054 | 36.000 | 13.29 | 0.00 | 0.00 | 3.16 |
1835 | 2579 | 7.109501 | TCTGTGCTAGCCAATTTATTCAGTTA | 58.890 | 34.615 | 13.29 | 0.00 | 0.00 | 2.24 |
1911 | 2684 | 2.516460 | GAGATGGCTGGCTGGCTG | 60.516 | 66.667 | 18.27 | 2.91 | 42.34 | 4.85 |
1912 | 2685 | 4.124943 | AGATGGCTGGCTGGCTGG | 62.125 | 66.667 | 18.27 | 0.85 | 42.34 | 4.85 |
1941 | 2714 | 2.180308 | AGGAGTATTCTAGGACTGGGGG | 59.820 | 54.545 | 0.00 | 0.00 | 0.00 | 5.40 |
2094 | 2908 | 4.992319 | TCCCTTATGCGATGTTATAAACGG | 59.008 | 41.667 | 9.03 | 0.00 | 0.00 | 4.44 |
2118 | 2932 | 2.083774 | TGAATGAATTCAGCGGGTGTC | 58.916 | 47.619 | 14.54 | 3.43 | 41.51 | 3.67 |
2130 | 2944 | 3.503363 | CAGCGGGTGTCAAATATATGCAT | 59.497 | 43.478 | 3.79 | 3.79 | 0.00 | 3.96 |
2131 | 2945 | 3.503363 | AGCGGGTGTCAAATATATGCATG | 59.497 | 43.478 | 10.16 | 0.00 | 0.00 | 4.06 |
2189 | 3003 | 8.868522 | TGGATTTAGAGAAGTCATTTTCATGT | 57.131 | 30.769 | 0.00 | 0.00 | 0.00 | 3.21 |
2220 | 3035 | 3.838317 | TGGAGAAGAAAAGAAGGGATCGA | 59.162 | 43.478 | 0.00 | 0.00 | 0.00 | 3.59 |
2221 | 3036 | 4.471386 | TGGAGAAGAAAAGAAGGGATCGAT | 59.529 | 41.667 | 0.00 | 0.00 | 0.00 | 3.59 |
2232 | 3047 | 5.389520 | AGAAGGGATCGATTGAGTGAGATA | 58.610 | 41.667 | 0.00 | 0.00 | 0.00 | 1.98 |
2275 | 3090 | 7.927629 | TCAGATTTGACAAGAAATCCAAAAAGG | 59.072 | 33.333 | 0.00 | 0.00 | 41.45 | 3.11 |
2308 | 3132 | 3.118702 | TGAAAGTTGTGTCCTCCGTGTAA | 60.119 | 43.478 | 0.00 | 0.00 | 0.00 | 2.41 |
2311 | 3135 | 1.069668 | GTTGTGTCCTCCGTGTAAGGT | 59.930 | 52.381 | 0.00 | 0.00 | 35.29 | 3.50 |
2393 | 3217 | 2.645730 | TGAATTAACAATGCCCGTGC | 57.354 | 45.000 | 0.00 | 0.00 | 38.26 | 5.34 |
2410 | 3234 | 1.799994 | GTGCCAATTGTCAACCATTGC | 59.200 | 47.619 | 4.43 | 0.00 | 0.00 | 3.56 |
2633 | 3459 | 1.443802 | GAAGAAGAAGGGCCGAACAG | 58.556 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2635 | 3461 | 0.321996 | AGAAGAAGGGCCGAACAGTC | 59.678 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2642 | 3468 | 1.374252 | GGCCGAACAGTCGTGACAT | 60.374 | 57.895 | 2.44 | 0.00 | 46.21 | 3.06 |
2643 | 3469 | 1.352156 | GGCCGAACAGTCGTGACATC | 61.352 | 60.000 | 2.44 | 0.00 | 46.21 | 3.06 |
2645 | 3471 | 0.109919 | CCGAACAGTCGTGACATCGA | 60.110 | 55.000 | 18.18 | 0.00 | 46.21 | 3.59 |
2657 | 3483 | 1.401905 | TGACATCGATCCTCTGACACG | 59.598 | 52.381 | 0.00 | 0.00 | 0.00 | 4.49 |
2659 | 3485 | 0.596083 | CATCGATCCTCTGACACGCC | 60.596 | 60.000 | 0.00 | 0.00 | 0.00 | 5.68 |
2660 | 3486 | 1.037579 | ATCGATCCTCTGACACGCCA | 61.038 | 55.000 | 0.00 | 0.00 | 0.00 | 5.69 |
2661 | 3487 | 1.037579 | TCGATCCTCTGACACGCCAT | 61.038 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
2662 | 3488 | 0.668535 | CGATCCTCTGACACGCCATA | 59.331 | 55.000 | 0.00 | 0.00 | 0.00 | 2.74 |
2663 | 3489 | 1.600663 | CGATCCTCTGACACGCCATAC | 60.601 | 57.143 | 0.00 | 0.00 | 0.00 | 2.39 |
2687 | 3514 | 2.820787 | ACTAGCCATCCGTAGCATCTAC | 59.179 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
2688 | 3515 | 2.002505 | AGCCATCCGTAGCATCTACT | 57.997 | 50.000 | 2.96 | 0.00 | 0.00 | 2.57 |
2689 | 3516 | 3.156288 | AGCCATCCGTAGCATCTACTA | 57.844 | 47.619 | 2.96 | 0.00 | 0.00 | 1.82 |
2696 | 3523 | 5.244785 | TCCGTAGCATCTACTAAACTGTG | 57.755 | 43.478 | 2.96 | 0.00 | 0.00 | 3.66 |
2731 | 3559 | 7.544566 | CGAGTAGCAAAGTTAGAAAGGTTATGA | 59.455 | 37.037 | 0.00 | 0.00 | 0.00 | 2.15 |
2756 | 3584 | 2.103263 | AGAAGCATGGTTAGGATCGGAC | 59.897 | 50.000 | 10.70 | 0.00 | 0.00 | 4.79 |
2758 | 3586 | 2.958818 | AGCATGGTTAGGATCGGACTA | 58.041 | 47.619 | 0.00 | 0.00 | 0.00 | 2.59 |
2759 | 3587 | 2.628657 | AGCATGGTTAGGATCGGACTAC | 59.371 | 50.000 | 0.00 | 0.00 | 0.00 | 2.73 |
2760 | 3588 | 2.364324 | GCATGGTTAGGATCGGACTACA | 59.636 | 50.000 | 0.00 | 0.00 | 0.00 | 2.74 |
2761 | 3589 | 3.553096 | GCATGGTTAGGATCGGACTACAG | 60.553 | 52.174 | 0.00 | 0.00 | 0.00 | 2.74 |
2762 | 3590 | 2.029623 | TGGTTAGGATCGGACTACAGC | 58.970 | 52.381 | 0.00 | 0.00 | 0.00 | 4.40 |
2763 | 3591 | 2.029623 | GGTTAGGATCGGACTACAGCA | 58.970 | 52.381 | 0.00 | 0.00 | 0.00 | 4.41 |
2764 | 3592 | 2.034812 | GGTTAGGATCGGACTACAGCAG | 59.965 | 54.545 | 0.00 | 0.00 | 0.00 | 4.24 |
2765 | 3593 | 1.319541 | TAGGATCGGACTACAGCAGC | 58.680 | 55.000 | 0.00 | 0.00 | 0.00 | 5.25 |
2766 | 3594 | 0.684479 | AGGATCGGACTACAGCAGCA | 60.684 | 55.000 | 0.00 | 0.00 | 0.00 | 4.41 |
2767 | 3595 | 0.528684 | GGATCGGACTACAGCAGCAC | 60.529 | 60.000 | 0.00 | 0.00 | 0.00 | 4.40 |
2768 | 3596 | 0.457851 | GATCGGACTACAGCAGCACT | 59.542 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
2769 | 3597 | 1.676529 | GATCGGACTACAGCAGCACTA | 59.323 | 52.381 | 0.00 | 0.00 | 0.00 | 2.74 |
2783 | 3611 | 1.996292 | GCACTAGCTCAACGATGTCA | 58.004 | 50.000 | 0.00 | 0.00 | 37.91 | 3.58 |
2784 | 3612 | 1.656095 | GCACTAGCTCAACGATGTCAC | 59.344 | 52.381 | 0.00 | 0.00 | 37.91 | 3.67 |
2785 | 3613 | 2.926586 | GCACTAGCTCAACGATGTCACA | 60.927 | 50.000 | 0.00 | 0.00 | 37.91 | 3.58 |
2786 | 3614 | 3.317150 | CACTAGCTCAACGATGTCACAA | 58.683 | 45.455 | 0.00 | 0.00 | 0.00 | 3.33 |
2789 | 3667 | 4.997395 | ACTAGCTCAACGATGTCACAATTT | 59.003 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
2792 | 3670 | 4.083643 | AGCTCAACGATGTCACAATTTGAG | 60.084 | 41.667 | 16.72 | 16.72 | 41.82 | 3.02 |
2794 | 3672 | 5.094429 | TCAACGATGTCACAATTTGAGTG | 57.906 | 39.130 | 2.79 | 0.00 | 33.71 | 3.51 |
2798 | 3676 | 3.253188 | CGATGTCACAATTTGAGTGGGTT | 59.747 | 43.478 | 2.79 | 0.00 | 37.58 | 4.11 |
2804 | 3682 | 1.273327 | CAATTTGAGTGGGTTCCAGGC | 59.727 | 52.381 | 0.00 | 0.00 | 32.34 | 4.85 |
2807 | 3685 | 2.360475 | GAGTGGGTTCCAGGCTGC | 60.360 | 66.667 | 9.56 | 0.00 | 32.34 | 5.25 |
2812 | 3690 | 1.302949 | GGGTTCCAGGCTGCATGTA | 59.697 | 57.895 | 13.64 | 0.00 | 0.00 | 2.29 |
2813 | 3691 | 0.323360 | GGGTTCCAGGCTGCATGTAA | 60.323 | 55.000 | 13.64 | 0.16 | 0.00 | 2.41 |
2815 | 3693 | 1.202348 | GGTTCCAGGCTGCATGTAAAC | 59.798 | 52.381 | 13.64 | 15.37 | 0.00 | 2.01 |
2817 | 3695 | 0.698238 | TCCAGGCTGCATGTAAACCT | 59.302 | 50.000 | 13.64 | 0.00 | 0.00 | 3.50 |
2846 | 3724 | 2.675348 | GTCGCTCCTCCTTGAATCTTTG | 59.325 | 50.000 | 0.00 | 0.00 | 0.00 | 2.77 |
2892 | 3771 | 8.885494 | ATGAGACAGAAGTAATCAAATCTAGC | 57.115 | 34.615 | 0.00 | 0.00 | 30.20 | 3.42 |
2987 | 3866 | 2.102757 | TGCAAAGAAAGAAAGCCATGCA | 59.897 | 40.909 | 0.00 | 0.00 | 39.95 | 3.96 |
3039 | 3920 | 1.407656 | GGAGTGGTGTGGACTGTGGA | 61.408 | 60.000 | 0.00 | 0.00 | 0.00 | 4.02 |
3191 | 4075 | 2.286872 | GGATGGAGTGAAGATGCAGTG | 58.713 | 52.381 | 0.00 | 0.00 | 0.00 | 3.66 |
3198 | 4082 | 3.406764 | AGTGAAGATGCAGTGTCCTTTC | 58.593 | 45.455 | 0.00 | 0.00 | 0.00 | 2.62 |
3204 | 4088 | 3.521126 | AGATGCAGTGTCCTTTCTATGGT | 59.479 | 43.478 | 0.00 | 0.00 | 0.00 | 3.55 |
3245 | 4130 | 6.039616 | GGTTTGACTTTTTATCTGCACACAA | 58.960 | 36.000 | 0.00 | 0.00 | 0.00 | 3.33 |
3310 | 4197 | 3.650281 | TGAGCATCAAGAAATAGGCCA | 57.350 | 42.857 | 5.01 | 0.00 | 45.97 | 5.36 |
3350 | 4237 | 8.414003 | GGAAGAAAAGAAATGGACAACTACTTT | 58.586 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
3353 | 4240 | 8.568794 | AGAAAAGAAATGGACAACTACTTTAGC | 58.431 | 33.333 | 0.00 | 0.00 | 0.00 | 3.09 |
3354 | 4241 | 8.465273 | AAAAGAAATGGACAACTACTTTAGCT | 57.535 | 30.769 | 0.00 | 0.00 | 0.00 | 3.32 |
3355 | 4242 | 7.440523 | AAGAAATGGACAACTACTTTAGCTG | 57.559 | 36.000 | 0.00 | 0.00 | 0.00 | 4.24 |
3484 | 4372 | 8.396390 | CGCTAACGTCTTCCTATATGTATATGT | 58.604 | 37.037 | 0.00 | 0.00 | 33.53 | 2.29 |
3510 | 4400 | 5.622448 | CGCAATATATGTGTTGAACAGATGC | 59.378 | 40.000 | 17.04 | 12.00 | 43.64 | 3.91 |
3552 | 4442 | 5.438117 | ACGTCTTATCGTCGTGTATATGTG | 58.562 | 41.667 | 0.00 | 0.00 | 40.04 | 3.21 |
3588 | 4479 | 3.065925 | TCAACGAATGTGATGTGTGCAAA | 59.934 | 39.130 | 0.00 | 0.00 | 0.00 | 3.68 |
3632 | 4523 | 1.393539 | CGAGTTGCTTGTGGGTTATCG | 59.606 | 52.381 | 0.00 | 0.00 | 0.00 | 2.92 |
3633 | 4524 | 2.423577 | GAGTTGCTTGTGGGTTATCGT | 58.576 | 47.619 | 0.00 | 0.00 | 0.00 | 3.73 |
3635 | 4526 | 2.812011 | AGTTGCTTGTGGGTTATCGTTC | 59.188 | 45.455 | 0.00 | 0.00 | 0.00 | 3.95 |
3636 | 4527 | 1.434555 | TGCTTGTGGGTTATCGTTCG | 58.565 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
3638 | 4529 | 1.802365 | GCTTGTGGGTTATCGTTCGTT | 59.198 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 1.710816 | TAACAACAAAAGGGGCAGGG | 58.289 | 50.000 | 0.00 | 0.00 | 0.00 | 4.45 |
1 | 2 | 2.432510 | TGTTAACAACAAAAGGGGCAGG | 59.567 | 45.455 | 5.64 | 0.00 | 38.72 | 4.85 |
2 | 3 | 3.810310 | TGTTAACAACAAAAGGGGCAG | 57.190 | 42.857 | 5.64 | 0.00 | 38.72 | 4.85 |
4 | 5 | 9.093970 | GAAATATATGTTAACAACAAAAGGGGC | 57.906 | 33.333 | 13.23 | 0.00 | 45.86 | 5.80 |
14 | 15 | 9.352784 | GCAAAGTGCAGAAATATATGTTAACAA | 57.647 | 29.630 | 13.23 | 2.74 | 44.26 | 2.83 |
15 | 16 | 8.909708 | GCAAAGTGCAGAAATATATGTTAACA | 57.090 | 30.769 | 11.41 | 11.41 | 44.26 | 2.41 |
32 | 33 | 1.594397 | GGCAAAAGAGTTGCAAAGTGC | 59.406 | 47.619 | 12.66 | 4.78 | 46.58 | 4.40 |
33 | 34 | 2.891112 | TGGCAAAAGAGTTGCAAAGTG | 58.109 | 42.857 | 12.66 | 0.00 | 46.58 | 3.16 |
34 | 35 | 3.460103 | CATGGCAAAAGAGTTGCAAAGT | 58.540 | 40.909 | 12.66 | 0.00 | 46.58 | 2.66 |
35 | 36 | 2.222445 | GCATGGCAAAAGAGTTGCAAAG | 59.778 | 45.455 | 12.66 | 0.22 | 46.58 | 2.77 |
36 | 37 | 2.211806 | GCATGGCAAAAGAGTTGCAAA | 58.788 | 42.857 | 12.66 | 1.41 | 46.58 | 3.68 |
37 | 38 | 1.138464 | TGCATGGCAAAAGAGTTGCAA | 59.862 | 42.857 | 12.66 | 0.00 | 46.58 | 4.08 |
40 | 41 | 2.512485 | TGTGCATGGCAAAAGAGTTG | 57.488 | 45.000 | 0.00 | 0.00 | 41.47 | 3.16 |
41 | 42 | 3.460103 | CTTTGTGCATGGCAAAAGAGTT | 58.540 | 40.909 | 14.80 | 0.00 | 41.47 | 3.01 |
42 | 43 | 2.224113 | CCTTTGTGCATGGCAAAAGAGT | 60.224 | 45.455 | 18.54 | 0.00 | 41.47 | 3.24 |
43 | 44 | 2.224113 | ACCTTTGTGCATGGCAAAAGAG | 60.224 | 45.455 | 18.54 | 13.76 | 41.47 | 2.85 |
44 | 45 | 1.761784 | ACCTTTGTGCATGGCAAAAGA | 59.238 | 42.857 | 18.54 | 3.28 | 41.47 | 2.52 |
45 | 46 | 2.137523 | GACCTTTGTGCATGGCAAAAG | 58.862 | 47.619 | 13.78 | 13.78 | 41.47 | 2.27 |
46 | 47 | 1.537776 | CGACCTTTGTGCATGGCAAAA | 60.538 | 47.619 | 0.00 | 0.00 | 41.47 | 2.44 |
47 | 48 | 0.031857 | CGACCTTTGTGCATGGCAAA | 59.968 | 50.000 | 0.00 | 0.00 | 41.47 | 3.68 |
50 | 51 | 0.031994 | AAACGACCTTTGTGCATGGC | 59.968 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
51 | 52 | 1.769733 | CAAACGACCTTTGTGCATGG | 58.230 | 50.000 | 0.00 | 0.00 | 35.41 | 3.66 |
58 | 59 | 4.625972 | ACTTAACCACAAACGACCTTTG | 57.374 | 40.909 | 0.00 | 0.00 | 44.42 | 2.77 |
59 | 60 | 5.824097 | ACATACTTAACCACAAACGACCTTT | 59.176 | 36.000 | 0.00 | 0.00 | 0.00 | 3.11 |
60 | 61 | 5.370679 | ACATACTTAACCACAAACGACCTT | 58.629 | 37.500 | 0.00 | 0.00 | 0.00 | 3.50 |
61 | 62 | 4.964593 | ACATACTTAACCACAAACGACCT | 58.035 | 39.130 | 0.00 | 0.00 | 0.00 | 3.85 |
63 | 64 | 5.007921 | ACCAACATACTTAACCACAAACGAC | 59.992 | 40.000 | 0.00 | 0.00 | 0.00 | 4.34 |
64 | 65 | 5.124645 | ACCAACATACTTAACCACAAACGA | 58.875 | 37.500 | 0.00 | 0.00 | 0.00 | 3.85 |
68 | 69 | 7.259161 | GTTTCAACCAACATACTTAACCACAA | 58.741 | 34.615 | 0.00 | 0.00 | 0.00 | 3.33 |
69 | 70 | 6.458478 | CGTTTCAACCAACATACTTAACCACA | 60.458 | 38.462 | 0.00 | 0.00 | 0.00 | 4.17 |
70 | 71 | 5.910723 | CGTTTCAACCAACATACTTAACCAC | 59.089 | 40.000 | 0.00 | 0.00 | 0.00 | 4.16 |
72 | 73 | 5.008911 | ACCGTTTCAACCAACATACTTAACC | 59.991 | 40.000 | 0.00 | 0.00 | 0.00 | 2.85 |
74 | 75 | 6.056884 | AGACCGTTTCAACCAACATACTTAA | 58.943 | 36.000 | 0.00 | 0.00 | 0.00 | 1.85 |
75 | 76 | 5.613329 | AGACCGTTTCAACCAACATACTTA | 58.387 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
76 | 77 | 4.457466 | AGACCGTTTCAACCAACATACTT | 58.543 | 39.130 | 0.00 | 0.00 | 0.00 | 2.24 |
77 | 78 | 4.081322 | AGACCGTTTCAACCAACATACT | 57.919 | 40.909 | 0.00 | 0.00 | 0.00 | 2.12 |
79 | 80 | 8.670135 | CATATTTAGACCGTTTCAACCAACATA | 58.330 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
80 | 81 | 7.175990 | ACATATTTAGACCGTTTCAACCAACAT | 59.824 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
81 | 82 | 6.487331 | ACATATTTAGACCGTTTCAACCAACA | 59.513 | 34.615 | 0.00 | 0.00 | 0.00 | 3.33 |
82 | 83 | 6.905578 | ACATATTTAGACCGTTTCAACCAAC | 58.094 | 36.000 | 0.00 | 0.00 | 0.00 | 3.77 |
83 | 84 | 8.670135 | CATACATATTTAGACCGTTTCAACCAA | 58.330 | 33.333 | 0.00 | 0.00 | 0.00 | 3.67 |
84 | 85 | 7.201661 | GCATACATATTTAGACCGTTTCAACCA | 60.202 | 37.037 | 0.00 | 0.00 | 0.00 | 3.67 |
85 | 86 | 7.130269 | GCATACATATTTAGACCGTTTCAACC | 58.870 | 38.462 | 0.00 | 0.00 | 0.00 | 3.77 |
91 | 92 | 5.762711 | TGCATGCATACATATTTAGACCGTT | 59.237 | 36.000 | 18.46 | 0.00 | 33.67 | 4.44 |
103 | 104 | 6.624204 | GCATACACATACATGCATGCATACAT | 60.624 | 38.462 | 31.73 | 23.12 | 45.51 | 2.29 |
104 | 105 | 5.335035 | GCATACACATACATGCATGCATACA | 60.335 | 40.000 | 31.73 | 21.98 | 45.51 | 2.29 |
105 | 106 | 5.090757 | GCATACACATACATGCATGCATAC | 58.909 | 41.667 | 31.73 | 0.00 | 45.51 | 2.39 |
106 | 107 | 5.299582 | GCATACACATACATGCATGCATA | 57.700 | 39.130 | 31.73 | 18.79 | 45.51 | 3.14 |
107 | 108 | 4.168922 | GCATACACATACATGCATGCAT | 57.831 | 40.909 | 27.46 | 27.46 | 45.51 | 3.96 |
108 | 109 | 3.629438 | GCATACACATACATGCATGCA | 57.371 | 42.857 | 26.53 | 25.04 | 45.51 | 3.96 |
113 | 114 | 6.237279 | CGAAACAAAAGCATACACATACATGC | 60.237 | 38.462 | 0.00 | 0.00 | 46.35 | 4.06 |
114 | 115 | 6.237279 | GCGAAACAAAAGCATACACATACATG | 60.237 | 38.462 | 0.00 | 0.00 | 0.00 | 3.21 |
115 | 116 | 5.799936 | GCGAAACAAAAGCATACACATACAT | 59.200 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
116 | 117 | 5.150683 | GCGAAACAAAAGCATACACATACA | 58.849 | 37.500 | 0.00 | 0.00 | 0.00 | 2.29 |
117 | 118 | 4.259734 | CGCGAAACAAAAGCATACACATAC | 59.740 | 41.667 | 0.00 | 0.00 | 0.00 | 2.39 |
119 | 120 | 3.233578 | CGCGAAACAAAAGCATACACAT | 58.766 | 40.909 | 0.00 | 0.00 | 0.00 | 3.21 |
120 | 121 | 2.032302 | ACGCGAAACAAAAGCATACACA | 59.968 | 40.909 | 15.93 | 0.00 | 0.00 | 3.72 |
121 | 122 | 2.400408 | CACGCGAAACAAAAGCATACAC | 59.600 | 45.455 | 15.93 | 0.00 | 0.00 | 2.90 |
123 | 124 | 2.400408 | CACACGCGAAACAAAAGCATAC | 59.600 | 45.455 | 15.93 | 0.00 | 0.00 | 2.39 |
152 | 153 | 2.509052 | AGCATACACATACGCGACAT | 57.491 | 45.000 | 15.93 | 1.87 | 0.00 | 3.06 |
154 | 155 | 3.181524 | ACAAAAGCATACACATACGCGAC | 60.182 | 43.478 | 15.93 | 0.00 | 0.00 | 5.19 |
155 | 156 | 2.997303 | ACAAAAGCATACACATACGCGA | 59.003 | 40.909 | 15.93 | 0.00 | 0.00 | 5.87 |
156 | 157 | 3.383546 | ACAAAAGCATACACATACGCG | 57.616 | 42.857 | 3.53 | 3.53 | 0.00 | 6.01 |
158 | 159 | 4.259734 | GCGAAACAAAAGCATACACATACG | 59.740 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
161 | 162 | 3.233578 | CGCGAAACAAAAGCATACACAT | 58.766 | 40.909 | 0.00 | 0.00 | 0.00 | 3.21 |
162 | 163 | 2.645163 | CGCGAAACAAAAGCATACACA | 58.355 | 42.857 | 0.00 | 0.00 | 0.00 | 3.72 |
163 | 164 | 1.382088 | GCGCGAAACAAAAGCATACAC | 59.618 | 47.619 | 12.10 | 0.00 | 0.00 | 2.90 |
166 | 167 | 0.236187 | ACGCGCGAAACAAAAGCATA | 59.764 | 45.000 | 39.36 | 0.00 | 0.00 | 3.14 |
170 | 171 | 1.394697 | AATCACGCGCGAAACAAAAG | 58.605 | 45.000 | 39.36 | 14.44 | 0.00 | 2.27 |
171 | 172 | 2.032722 | ACTAATCACGCGCGAAACAAAA | 60.033 | 40.909 | 39.36 | 13.87 | 0.00 | 2.44 |
173 | 174 | 1.141645 | ACTAATCACGCGCGAAACAA | 58.858 | 45.000 | 39.36 | 17.24 | 0.00 | 2.83 |
174 | 175 | 1.979897 | TACTAATCACGCGCGAAACA | 58.020 | 45.000 | 39.36 | 16.92 | 0.00 | 2.83 |
175 | 176 | 4.486691 | CGATATACTAATCACGCGCGAAAC | 60.487 | 45.833 | 39.36 | 7.47 | 0.00 | 2.78 |
176 | 177 | 3.600786 | CGATATACTAATCACGCGCGAAA | 59.399 | 43.478 | 39.36 | 23.85 | 0.00 | 3.46 |
177 | 178 | 3.158268 | CGATATACTAATCACGCGCGAA | 58.842 | 45.455 | 39.36 | 24.25 | 0.00 | 4.70 |
178 | 179 | 2.765918 | CGATATACTAATCACGCGCGA | 58.234 | 47.619 | 39.36 | 16.76 | 0.00 | 5.87 |
179 | 180 | 1.249491 | GCGATATACTAATCACGCGCG | 59.751 | 52.381 | 30.96 | 30.96 | 37.06 | 6.86 |
180 | 181 | 2.953806 | GCGATATACTAATCACGCGC | 57.046 | 50.000 | 5.73 | 0.00 | 37.06 | 6.86 |
183 | 184 | 8.669394 | TTAGACAATGCGATATACTAATCACG | 57.331 | 34.615 | 0.00 | 0.00 | 0.00 | 4.35 |
191 | 192 | 7.376072 | GCCAAAACTTTAGACAATGCGATATAC | 59.624 | 37.037 | 0.00 | 0.00 | 0.00 | 1.47 |
198 | 199 | 5.119125 | GTCATGCCAAAACTTTAGACAATGC | 59.881 | 40.000 | 0.00 | 0.00 | 0.00 | 3.56 |
222 | 224 | 3.902881 | AGTCTTGATCCTAGCTGTTGG | 57.097 | 47.619 | 0.00 | 0.00 | 0.00 | 3.77 |
234 | 236 | 2.847901 | CGTCGACGTGTTAGTCTTGAT | 58.152 | 47.619 | 29.08 | 0.00 | 38.90 | 2.57 |
253 | 255 | 2.041966 | GGTATGCACGACGATAAGACG | 58.958 | 52.381 | 0.00 | 0.00 | 43.26 | 4.18 |
254 | 256 | 3.043586 | CAGGTATGCACGACGATAAGAC | 58.956 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
255 | 257 | 2.686405 | ACAGGTATGCACGACGATAAGA | 59.314 | 45.455 | 0.00 | 0.00 | 0.00 | 2.10 |
257 | 259 | 2.424246 | TCACAGGTATGCACGACGATAA | 59.576 | 45.455 | 0.00 | 0.00 | 0.00 | 1.75 |
258 | 260 | 2.018515 | TCACAGGTATGCACGACGATA | 58.981 | 47.619 | 0.00 | 0.00 | 0.00 | 2.92 |
259 | 261 | 0.815095 | TCACAGGTATGCACGACGAT | 59.185 | 50.000 | 0.00 | 0.00 | 0.00 | 3.73 |
260 | 262 | 0.599060 | TTCACAGGTATGCACGACGA | 59.401 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
261 | 263 | 1.640428 | ATTCACAGGTATGCACGACG | 58.360 | 50.000 | 0.00 | 0.00 | 0.00 | 5.12 |
262 | 264 | 6.618592 | GCAATATATTCACAGGTATGCACGAC | 60.619 | 42.308 | 0.00 | 0.00 | 0.00 | 4.34 |
263 | 265 | 5.408299 | GCAATATATTCACAGGTATGCACGA | 59.592 | 40.000 | 0.00 | 0.00 | 0.00 | 4.35 |
264 | 266 | 5.409520 | AGCAATATATTCACAGGTATGCACG | 59.590 | 40.000 | 0.00 | 0.00 | 0.00 | 5.34 |
265 | 267 | 6.808008 | AGCAATATATTCACAGGTATGCAC | 57.192 | 37.500 | 0.00 | 0.00 | 0.00 | 4.57 |
266 | 268 | 6.207221 | CCAAGCAATATATTCACAGGTATGCA | 59.793 | 38.462 | 0.00 | 0.00 | 0.00 | 3.96 |
268 | 270 | 7.360353 | CGTCCAAGCAATATATTCACAGGTATG | 60.360 | 40.741 | 0.00 | 0.00 | 0.00 | 2.39 |
270 | 272 | 5.989168 | CGTCCAAGCAATATATTCACAGGTA | 59.011 | 40.000 | 0.00 | 0.00 | 0.00 | 3.08 |
272 | 274 | 5.056480 | TCGTCCAAGCAATATATTCACAGG | 58.944 | 41.667 | 0.00 | 0.00 | 0.00 | 4.00 |
273 | 275 | 6.603237 | TTCGTCCAAGCAATATATTCACAG | 57.397 | 37.500 | 0.00 | 0.00 | 0.00 | 3.66 |
281 | 886 | 4.261322 | GCATCACATTCGTCCAAGCAATAT | 60.261 | 41.667 | 0.00 | 0.00 | 0.00 | 1.28 |
286 | 891 | 0.247814 | CGCATCACATTCGTCCAAGC | 60.248 | 55.000 | 0.00 | 0.00 | 0.00 | 4.01 |
304 | 909 | 2.277084 | GCCATTGGTTAGGTCTACACG | 58.723 | 52.381 | 4.26 | 0.00 | 0.00 | 4.49 |
310 | 915 | 2.092323 | GGAACTGCCATTGGTTAGGTC | 58.908 | 52.381 | 14.95 | 14.95 | 36.34 | 3.85 |
311 | 916 | 1.710809 | AGGAACTGCCATTGGTTAGGT | 59.289 | 47.619 | 4.26 | 1.91 | 37.18 | 3.08 |
324 | 929 | 1.602311 | AGCAACTCAGCAAGGAACTG | 58.398 | 50.000 | 0.00 | 0.00 | 40.86 | 3.16 |
326 | 931 | 1.678101 | ACAAGCAACTCAGCAAGGAAC | 59.322 | 47.619 | 0.00 | 0.00 | 36.85 | 3.62 |
335 | 940 | 1.350684 | TGATAGCCCACAAGCAACTCA | 59.649 | 47.619 | 0.00 | 0.00 | 34.23 | 3.41 |
337 | 942 | 1.952367 | GCTGATAGCCCACAAGCAACT | 60.952 | 52.381 | 0.00 | 0.00 | 34.48 | 3.16 |
356 | 961 | 0.025256 | TGTCAAACGAACGTGAACGC | 59.975 | 50.000 | 2.11 | 0.00 | 44.43 | 4.84 |
357 | 962 | 2.286223 | CATGTCAAACGAACGTGAACG | 58.714 | 47.619 | 0.40 | 0.40 | 46.33 | 3.95 |
358 | 963 | 2.031191 | ACCATGTCAAACGAACGTGAAC | 59.969 | 45.455 | 0.00 | 1.01 | 36.01 | 3.18 |
359 | 964 | 2.281517 | ACCATGTCAAACGAACGTGAA | 58.718 | 42.857 | 0.00 | 0.00 | 36.01 | 3.18 |
360 | 965 | 1.862201 | GACCATGTCAAACGAACGTGA | 59.138 | 47.619 | 0.00 | 0.00 | 36.01 | 4.35 |
364 | 969 | 3.326747 | AGCTAGACCATGTCAAACGAAC | 58.673 | 45.455 | 0.00 | 0.00 | 34.60 | 3.95 |
383 | 988 | 2.182842 | CCAGGAACGCATGCCTAGC | 61.183 | 63.158 | 13.15 | 0.00 | 32.03 | 3.42 |
394 | 999 | 6.814146 | TGTGAAAACAATACAAAACCAGGAAC | 59.186 | 34.615 | 0.00 | 0.00 | 0.00 | 3.62 |
395 | 1000 | 6.936279 | TGTGAAAACAATACAAAACCAGGAA | 58.064 | 32.000 | 0.00 | 0.00 | 0.00 | 3.36 |
396 | 1001 | 6.531503 | TGTGAAAACAATACAAAACCAGGA | 57.468 | 33.333 | 0.00 | 0.00 | 0.00 | 3.86 |
411 | 1021 | 5.348164 | GCACCCAACCATATATGTGAAAAC | 58.652 | 41.667 | 11.73 | 0.00 | 0.00 | 2.43 |
412 | 1022 | 4.097135 | CGCACCCAACCATATATGTGAAAA | 59.903 | 41.667 | 11.73 | 0.00 | 0.00 | 2.29 |
416 | 1026 | 2.548057 | GACGCACCCAACCATATATGTG | 59.452 | 50.000 | 11.73 | 4.39 | 0.00 | 3.21 |
417 | 1027 | 2.805295 | CGACGCACCCAACCATATATGT | 60.805 | 50.000 | 11.73 | 0.00 | 0.00 | 2.29 |
418 | 1028 | 1.798223 | CGACGCACCCAACCATATATG | 59.202 | 52.381 | 5.68 | 5.68 | 0.00 | 1.78 |
419 | 1029 | 1.414919 | ACGACGCACCCAACCATATAT | 59.585 | 47.619 | 0.00 | 0.00 | 0.00 | 0.86 |
421 | 1031 | 0.035820 | AACGACGCACCCAACCATAT | 60.036 | 50.000 | 0.00 | 0.00 | 0.00 | 1.78 |
422 | 1032 | 0.607112 | TAACGACGCACCCAACCATA | 59.393 | 50.000 | 0.00 | 0.00 | 0.00 | 2.74 |
423 | 1033 | 0.672401 | CTAACGACGCACCCAACCAT | 60.672 | 55.000 | 0.00 | 0.00 | 0.00 | 3.55 |
427 | 1037 | 2.042404 | AACCCTAACGACGCACCCAA | 62.042 | 55.000 | 0.00 | 0.00 | 0.00 | 4.12 |
451 | 1061 | 2.099263 | TCATTTCTTCCTCGTCTAGCCG | 59.901 | 50.000 | 0.00 | 0.00 | 0.00 | 5.52 |
507 | 1129 | 2.303022 | CGGCACAGGGAGATTATACCAT | 59.697 | 50.000 | 0.00 | 0.00 | 0.00 | 3.55 |
512 | 1134 | 0.759346 | GTCCGGCACAGGGAGATTAT | 59.241 | 55.000 | 0.00 | 0.00 | 33.31 | 1.28 |
513 | 1135 | 0.616395 | TGTCCGGCACAGGGAGATTA | 60.616 | 55.000 | 0.00 | 0.00 | 33.31 | 1.75 |
514 | 1136 | 1.488705 | TTGTCCGGCACAGGGAGATT | 61.489 | 55.000 | 0.00 | 0.00 | 35.97 | 2.40 |
516 | 1138 | 1.701031 | TTTTGTCCGGCACAGGGAGA | 61.701 | 55.000 | 0.00 | 0.00 | 35.97 | 3.71 |
517 | 1139 | 1.228124 | TTTTGTCCGGCACAGGGAG | 60.228 | 57.895 | 0.00 | 0.00 | 35.97 | 4.30 |
527 | 1149 | 2.943653 | GTCTGGCCGTTTTGTCCG | 59.056 | 61.111 | 0.00 | 0.00 | 0.00 | 4.79 |
538 | 1186 | 2.000447 | GACTATTTCCACACGTCTGGC | 59.000 | 52.381 | 4.76 | 0.00 | 0.00 | 4.85 |
552 | 1200 | 9.474313 | GAGAGAGGAGATTATACATGGACTATT | 57.526 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
554 | 1202 | 8.225863 | AGAGAGAGGAGATTATACATGGACTA | 57.774 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
557 | 1205 | 7.341885 | AGAGAGAGAGGAGATTATACATGGA | 57.658 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
583 | 1231 | 9.478768 | AGTTTTCTCCGTTTTTCACTTTAAAAA | 57.521 | 25.926 | 0.00 | 0.00 | 36.30 | 1.94 |
584 | 1232 | 9.478768 | AAGTTTTCTCCGTTTTTCACTTTAAAA | 57.521 | 25.926 | 0.00 | 0.00 | 0.00 | 1.52 |
585 | 1233 | 9.478768 | AAAGTTTTCTCCGTTTTTCACTTTAAA | 57.521 | 25.926 | 0.00 | 0.00 | 32.72 | 1.52 |
587 | 1235 | 9.558648 | GTAAAGTTTTCTCCGTTTTTCACTTTA | 57.441 | 29.630 | 0.00 | 0.00 | 35.42 | 1.85 |
599 | 1247 | 2.225727 | GGTGGCTGTAAAGTTTTCTCCG | 59.774 | 50.000 | 0.00 | 0.00 | 0.00 | 4.63 |
608 | 1256 | 1.064505 | CATGCATCGGTGGCTGTAAAG | 59.935 | 52.381 | 0.00 | 0.00 | 0.00 | 1.85 |
712 | 1374 | 9.979578 | AATTGTCAAGAATTACTGTTTTGCATA | 57.020 | 25.926 | 0.00 | 0.00 | 0.00 | 3.14 |
782 | 1452 | 2.128507 | ATCGTCCGCTTCTCTCCCC | 61.129 | 63.158 | 0.00 | 0.00 | 0.00 | 4.81 |
786 | 1456 | 2.496817 | GCCATCGTCCGCTTCTCT | 59.503 | 61.111 | 0.00 | 0.00 | 0.00 | 3.10 |
787 | 1457 | 2.586357 | GGCCATCGTCCGCTTCTC | 60.586 | 66.667 | 0.00 | 0.00 | 0.00 | 2.87 |
798 | 1470 | 2.125106 | AGTCGCTTTCCGGCCATC | 60.125 | 61.111 | 2.24 | 0.00 | 44.17 | 3.51 |
863 | 1541 | 4.384098 | GCAATTTTTAATTGGGAGAGGGGG | 60.384 | 45.833 | 12.53 | 0.00 | 0.00 | 5.40 |
865 | 1543 | 5.419239 | TGCAATTTTTAATTGGGAGAGGG | 57.581 | 39.130 | 12.53 | 0.00 | 0.00 | 4.30 |
868 | 1546 | 5.237048 | GTGCTGCAATTTTTAATTGGGAGA | 58.763 | 37.500 | 2.77 | 0.00 | 0.00 | 3.71 |
870 | 1548 | 4.202398 | TGGTGCTGCAATTTTTAATTGGGA | 60.202 | 37.500 | 2.77 | 0.00 | 0.00 | 4.37 |
873 | 1551 | 4.514441 | TGGTGGTGCTGCAATTTTTAATTG | 59.486 | 37.500 | 2.77 | 7.58 | 0.00 | 2.32 |
919 | 1597 | 0.247458 | CTGCTTAGCTTTCGCGCTTC | 60.247 | 55.000 | 5.56 | 0.00 | 41.30 | 3.86 |
954 | 1636 | 0.320247 | GTGTGTCAGCTCCACCTGAG | 60.320 | 60.000 | 9.87 | 0.00 | 42.14 | 3.35 |
966 | 1648 | 2.597455 | TGGATCTCTGTCTGTGTGTCA | 58.403 | 47.619 | 0.00 | 0.00 | 0.00 | 3.58 |
967 | 1649 | 3.321497 | GTTGGATCTCTGTCTGTGTGTC | 58.679 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
968 | 1650 | 2.037772 | GGTTGGATCTCTGTCTGTGTGT | 59.962 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
969 | 1651 | 2.613977 | GGGTTGGATCTCTGTCTGTGTG | 60.614 | 54.545 | 0.00 | 0.00 | 0.00 | 3.82 |
970 | 1652 | 1.625818 | GGGTTGGATCTCTGTCTGTGT | 59.374 | 52.381 | 0.00 | 0.00 | 0.00 | 3.72 |
971 | 1653 | 1.625315 | TGGGTTGGATCTCTGTCTGTG | 59.375 | 52.381 | 0.00 | 0.00 | 0.00 | 3.66 |
972 | 1654 | 1.905215 | CTGGGTTGGATCTCTGTCTGT | 59.095 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
973 | 1655 | 1.905215 | ACTGGGTTGGATCTCTGTCTG | 59.095 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
1169 | 1867 | 3.238241 | CGTAGAACGTCGGCTGCG | 61.238 | 66.667 | 11.80 | 11.80 | 36.74 | 5.18 |
1458 | 2156 | 2.930019 | CAGGCAGAGTGGGTGGGA | 60.930 | 66.667 | 0.00 | 0.00 | 0.00 | 4.37 |
1460 | 2158 | 2.177594 | GAGACAGGCAGAGTGGGTGG | 62.178 | 65.000 | 0.00 | 0.00 | 0.00 | 4.61 |
1461 | 2159 | 1.294780 | GAGACAGGCAGAGTGGGTG | 59.705 | 63.158 | 0.00 | 0.00 | 0.00 | 4.61 |
1509 | 2224 | 5.822519 | TCCATTATCATCCACGGAAAAGAAG | 59.177 | 40.000 | 0.00 | 0.00 | 0.00 | 2.85 |
1512 | 2227 | 5.048504 | CCATCCATTATCATCCACGGAAAAG | 60.049 | 44.000 | 0.00 | 0.00 | 0.00 | 2.27 |
1513 | 2228 | 4.826733 | CCATCCATTATCATCCACGGAAAA | 59.173 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
1514 | 2229 | 4.103943 | TCCATCCATTATCATCCACGGAAA | 59.896 | 41.667 | 0.00 | 0.00 | 0.00 | 3.13 |
1515 | 2230 | 3.650461 | TCCATCCATTATCATCCACGGAA | 59.350 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
1517 | 2232 | 3.701205 | TCCATCCATTATCATCCACGG | 57.299 | 47.619 | 0.00 | 0.00 | 0.00 | 4.94 |
1518 | 2233 | 6.016024 | ACAATTTCCATCCATTATCATCCACG | 60.016 | 38.462 | 0.00 | 0.00 | 0.00 | 4.94 |
1519 | 2234 | 7.232127 | AGACAATTTCCATCCATTATCATCCAC | 59.768 | 37.037 | 0.00 | 0.00 | 0.00 | 4.02 |
1525 | 2240 | 6.395426 | TGCAGACAATTTCCATCCATTATC | 57.605 | 37.500 | 0.00 | 0.00 | 0.00 | 1.75 |
1552 | 2268 | 2.579207 | TTAATTCGAGGAGCAGACCG | 57.421 | 50.000 | 0.00 | 0.00 | 34.73 | 4.79 |
1606 | 2322 | 6.273825 | AGATAAATACAAGTGTACAGCGAGG | 58.726 | 40.000 | 0.00 | 0.00 | 32.72 | 4.63 |
1607 | 2323 | 7.757097 | AAGATAAATACAAGTGTACAGCGAG | 57.243 | 36.000 | 0.00 | 0.00 | 32.72 | 5.03 |
1661 | 2384 | 4.272991 | TGAATCCAACAAGTTTGCAATTGC | 59.727 | 37.500 | 23.69 | 23.69 | 42.50 | 3.56 |
1663 | 2386 | 5.916318 | TCTGAATCCAACAAGTTTGCAATT | 58.084 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
1665 | 2388 | 4.998671 | TCTGAATCCAACAAGTTTGCAA | 57.001 | 36.364 | 0.00 | 0.00 | 0.00 | 4.08 |
1666 | 2389 | 4.262121 | CCATCTGAATCCAACAAGTTTGCA | 60.262 | 41.667 | 0.00 | 0.00 | 0.00 | 4.08 |
1667 | 2390 | 4.240096 | CCATCTGAATCCAACAAGTTTGC | 58.760 | 43.478 | 0.00 | 0.00 | 0.00 | 3.68 |
1668 | 2391 | 5.458041 | ACCATCTGAATCCAACAAGTTTG | 57.542 | 39.130 | 0.00 | 0.00 | 0.00 | 2.93 |
1669 | 2392 | 6.484364 | AAACCATCTGAATCCAACAAGTTT | 57.516 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
1726 | 2449 | 2.816087 | ACAAGCCAAAGTCTGTATGCAG | 59.184 | 45.455 | 4.14 | 4.14 | 43.87 | 4.41 |
1732 | 2455 | 5.852282 | AATTAACACAAGCCAAAGTCTGT | 57.148 | 34.783 | 0.00 | 0.00 | 0.00 | 3.41 |
1757 | 2501 | 9.099454 | CTTGTTAAATATATCGAGGATTAGCCC | 57.901 | 37.037 | 0.00 | 0.00 | 37.37 | 5.19 |
1793 | 2537 | 5.088739 | GCACAGAATTATCGAGGTGTTTTG | 58.911 | 41.667 | 0.00 | 0.00 | 32.88 | 2.44 |
1798 | 2542 | 3.738282 | GCTAGCACAGAATTATCGAGGTG | 59.262 | 47.826 | 10.63 | 0.00 | 33.21 | 4.00 |
1804 | 2548 | 9.617975 | GAATAAATTGGCTAGCACAGAATTATC | 57.382 | 33.333 | 18.24 | 9.88 | 0.00 | 1.75 |
1809 | 2553 | 5.945784 | ACTGAATAAATTGGCTAGCACAGAA | 59.054 | 36.000 | 18.24 | 3.63 | 0.00 | 3.02 |
1911 | 2684 | 5.186215 | GTCCTAGAATACTCCTGGATTAGCC | 59.814 | 48.000 | 0.00 | 0.00 | 37.10 | 3.93 |
1912 | 2685 | 6.014012 | AGTCCTAGAATACTCCTGGATTAGC | 58.986 | 44.000 | 0.00 | 0.00 | 0.00 | 3.09 |
1913 | 2686 | 6.435904 | CCAGTCCTAGAATACTCCTGGATTAG | 59.564 | 46.154 | 0.00 | 0.00 | 40.29 | 1.73 |
1914 | 2687 | 6.315714 | CCAGTCCTAGAATACTCCTGGATTA | 58.684 | 44.000 | 0.00 | 0.00 | 40.29 | 1.75 |
1993 | 2775 | 5.416083 | CATATGGAGTGGTTAGTCGTCAAA | 58.584 | 41.667 | 0.00 | 0.00 | 0.00 | 2.69 |
2094 | 2908 | 4.516698 | ACACCCGCTGAATTCATTCATATC | 59.483 | 41.667 | 8.96 | 0.00 | 44.92 | 1.63 |
2114 | 2928 | 4.977963 | GCCACACATGCATATATTTGACAC | 59.022 | 41.667 | 0.00 | 0.00 | 0.00 | 3.67 |
2130 | 2944 | 0.033894 | AGCCATCATCATGCCACACA | 60.034 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
2131 | 2945 | 0.384309 | CAGCCATCATCATGCCACAC | 59.616 | 55.000 | 0.00 | 0.00 | 0.00 | 3.82 |
2213 | 3028 | 5.398603 | ACATATCTCACTCAATCGATCCC | 57.601 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
2220 | 3035 | 9.466497 | ACACCAAATTAACATATCTCACTCAAT | 57.534 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
2221 | 3036 | 8.862325 | ACACCAAATTAACATATCTCACTCAA | 57.138 | 30.769 | 0.00 | 0.00 | 0.00 | 3.02 |
2232 | 3047 | 8.420222 | TCAAATCTGACAACACCAAATTAACAT | 58.580 | 29.630 | 0.00 | 0.00 | 0.00 | 2.71 |
2296 | 3111 | 2.825861 | TTCAACCTTACACGGAGGAC | 57.174 | 50.000 | 0.00 | 0.00 | 37.72 | 3.85 |
2301 | 3125 | 3.971150 | TGCAATTTTCAACCTTACACGG | 58.029 | 40.909 | 0.00 | 0.00 | 0.00 | 4.94 |
2308 | 3132 | 3.565307 | TCACTCCTGCAATTTTCAACCT | 58.435 | 40.909 | 0.00 | 0.00 | 0.00 | 3.50 |
2311 | 3135 | 3.225104 | AGCTCACTCCTGCAATTTTCAA | 58.775 | 40.909 | 0.00 | 0.00 | 0.00 | 2.69 |
2393 | 3217 | 4.128643 | ACAAAGCAATGGTTGACAATTGG | 58.871 | 39.130 | 10.83 | 0.22 | 0.00 | 3.16 |
2410 | 3234 | 2.975410 | TCGCAAAGAGCATGACAAAG | 57.025 | 45.000 | 0.00 | 0.00 | 46.13 | 2.77 |
2633 | 3459 | 1.671328 | TCAGAGGATCGATGTCACGAC | 59.329 | 52.381 | 0.54 | 0.00 | 44.84 | 4.34 |
2635 | 3461 | 1.401905 | TGTCAGAGGATCGATGTCACG | 59.598 | 52.381 | 0.54 | 0.00 | 42.67 | 4.35 |
2642 | 3468 | 1.037579 | ATGGCGTGTCAGAGGATCGA | 61.038 | 55.000 | 0.00 | 0.00 | 42.67 | 3.59 |
2643 | 3469 | 0.668535 | TATGGCGTGTCAGAGGATCG | 59.331 | 55.000 | 0.00 | 0.00 | 42.67 | 3.69 |
2645 | 3471 | 0.385751 | CGTATGGCGTGTCAGAGGAT | 59.614 | 55.000 | 0.00 | 0.00 | 35.54 | 3.24 |
2657 | 3483 | 0.951040 | GGATGGCTAGTGCGTATGGC | 60.951 | 60.000 | 0.00 | 0.00 | 40.82 | 4.40 |
2659 | 3485 | 0.032130 | ACGGATGGCTAGTGCGTATG | 59.968 | 55.000 | 0.00 | 0.00 | 41.84 | 2.39 |
2660 | 3486 | 1.540267 | CTACGGATGGCTAGTGCGTAT | 59.460 | 52.381 | 6.15 | 0.00 | 43.22 | 3.06 |
2661 | 3487 | 0.949397 | CTACGGATGGCTAGTGCGTA | 59.051 | 55.000 | 5.67 | 5.67 | 41.84 | 4.42 |
2662 | 3488 | 1.734137 | CTACGGATGGCTAGTGCGT | 59.266 | 57.895 | 3.98 | 3.98 | 45.49 | 5.24 |
2663 | 3489 | 1.661821 | GCTACGGATGGCTAGTGCG | 60.662 | 63.158 | 0.00 | 0.00 | 40.82 | 5.34 |
2664 | 3490 | 0.034059 | ATGCTACGGATGGCTAGTGC | 59.966 | 55.000 | 0.00 | 0.00 | 38.76 | 4.40 |
2687 | 3514 | 8.343366 | TGCTACTCGAAGATATACACAGTTTAG | 58.657 | 37.037 | 0.00 | 0.00 | 33.89 | 1.85 |
2688 | 3515 | 8.217131 | TGCTACTCGAAGATATACACAGTTTA | 57.783 | 34.615 | 0.00 | 0.00 | 33.89 | 2.01 |
2689 | 3516 | 7.096884 | TGCTACTCGAAGATATACACAGTTT | 57.903 | 36.000 | 0.00 | 0.00 | 33.89 | 2.66 |
2696 | 3523 | 9.947669 | TTCTAACTTTGCTACTCGAAGATATAC | 57.052 | 33.333 | 0.00 | 0.00 | 38.25 | 1.47 |
2705 | 3532 | 7.544566 | TCATAACCTTTCTAACTTTGCTACTCG | 59.455 | 37.037 | 0.00 | 0.00 | 0.00 | 4.18 |
2731 | 3559 | 5.071788 | TCCGATCCTAACCATGCTTCTTAAT | 59.928 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2764 | 3592 | 1.656095 | GTGACATCGTTGAGCTAGTGC | 59.344 | 52.381 | 0.00 | 0.00 | 40.05 | 4.40 |
2765 | 3593 | 2.946564 | TGTGACATCGTTGAGCTAGTG | 58.053 | 47.619 | 0.00 | 0.00 | 0.00 | 2.74 |
2766 | 3594 | 3.660501 | TTGTGACATCGTTGAGCTAGT | 57.339 | 42.857 | 0.00 | 0.00 | 0.00 | 2.57 |
2767 | 3595 | 5.120674 | TCAAATTGTGACATCGTTGAGCTAG | 59.879 | 40.000 | 0.00 | 0.00 | 0.00 | 3.42 |
2768 | 3596 | 4.994217 | TCAAATTGTGACATCGTTGAGCTA | 59.006 | 37.500 | 0.00 | 0.00 | 0.00 | 3.32 |
2769 | 3597 | 3.814842 | TCAAATTGTGACATCGTTGAGCT | 59.185 | 39.130 | 0.00 | 0.00 | 0.00 | 4.09 |
2773 | 3601 | 4.221342 | CCACTCAAATTGTGACATCGTTG | 58.779 | 43.478 | 1.79 | 0.00 | 37.60 | 4.10 |
2774 | 3602 | 3.253188 | CCCACTCAAATTGTGACATCGTT | 59.747 | 43.478 | 1.79 | 0.00 | 37.60 | 3.85 |
2775 | 3603 | 2.813754 | CCCACTCAAATTGTGACATCGT | 59.186 | 45.455 | 1.79 | 0.00 | 37.60 | 3.73 |
2779 | 3607 | 2.955660 | GGAACCCACTCAAATTGTGACA | 59.044 | 45.455 | 1.79 | 0.00 | 37.60 | 3.58 |
2780 | 3608 | 2.955660 | TGGAACCCACTCAAATTGTGAC | 59.044 | 45.455 | 1.79 | 0.00 | 37.60 | 3.67 |
2781 | 3609 | 3.221771 | CTGGAACCCACTCAAATTGTGA | 58.778 | 45.455 | 1.79 | 0.00 | 37.60 | 3.58 |
2782 | 3610 | 2.297033 | CCTGGAACCCACTCAAATTGTG | 59.703 | 50.000 | 0.00 | 0.00 | 35.39 | 3.33 |
2783 | 3611 | 2.597455 | CCTGGAACCCACTCAAATTGT | 58.403 | 47.619 | 0.00 | 0.00 | 0.00 | 2.71 |
2784 | 3612 | 1.273327 | GCCTGGAACCCACTCAAATTG | 59.727 | 52.381 | 0.00 | 0.00 | 0.00 | 2.32 |
2785 | 3613 | 1.147817 | AGCCTGGAACCCACTCAAATT | 59.852 | 47.619 | 0.00 | 0.00 | 0.00 | 1.82 |
2786 | 3614 | 0.779997 | AGCCTGGAACCCACTCAAAT | 59.220 | 50.000 | 0.00 | 0.00 | 0.00 | 2.32 |
2789 | 3667 | 3.160585 | CAGCCTGGAACCCACTCA | 58.839 | 61.111 | 0.00 | 0.00 | 0.00 | 3.41 |
2792 | 3670 | 2.036256 | ATGCAGCCTGGAACCCAC | 59.964 | 61.111 | 0.00 | 0.00 | 0.00 | 4.61 |
2794 | 3672 | 0.323360 | TTACATGCAGCCTGGAACCC | 60.323 | 55.000 | 0.00 | 0.00 | 0.00 | 4.11 |
2798 | 3676 | 0.698238 | AGGTTTACATGCAGCCTGGA | 59.302 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
2804 | 3682 | 3.436704 | ACATCGTTGAGGTTTACATGCAG | 59.563 | 43.478 | 0.00 | 0.00 | 0.00 | 4.41 |
2807 | 3685 | 3.483574 | GCGACATCGTTGAGGTTTACATG | 60.484 | 47.826 | 2.85 | 0.00 | 42.22 | 3.21 |
2812 | 3690 | 1.429463 | GAGCGACATCGTTGAGGTTT | 58.571 | 50.000 | 2.85 | 0.00 | 42.22 | 3.27 |
2813 | 3691 | 0.389948 | GGAGCGACATCGTTGAGGTT | 60.390 | 55.000 | 2.85 | 0.00 | 42.22 | 3.50 |
2815 | 3693 | 0.526524 | GAGGAGCGACATCGTTGAGG | 60.527 | 60.000 | 2.85 | 0.00 | 42.22 | 3.86 |
2817 | 3695 | 0.965866 | AGGAGGAGCGACATCGTTGA | 60.966 | 55.000 | 2.85 | 0.00 | 42.22 | 3.18 |
2892 | 3771 | 5.283247 | GTCAAATCGTCAGTTCGTAGTACAG | 59.717 | 44.000 | 0.38 | 0.00 | 0.00 | 2.74 |
2900 | 3779 | 2.155732 | CACTGGTCAAATCGTCAGTTCG | 59.844 | 50.000 | 0.00 | 0.00 | 38.27 | 3.95 |
2954 | 3833 | 1.398692 | TCTTTGCAACTCCAACCACC | 58.601 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
2987 | 3866 | 6.947733 | TGAAACCACTGAAAGAATATCCATGT | 59.052 | 34.615 | 0.00 | 0.00 | 37.43 | 3.21 |
3039 | 3920 | 3.814504 | AAATCAACACCATCAGTCCCT | 57.185 | 42.857 | 0.00 | 0.00 | 0.00 | 4.20 |
3191 | 4075 | 7.447545 | AGGAACAGTTAAAACCATAGAAAGGAC | 59.552 | 37.037 | 0.00 | 0.00 | 0.00 | 3.85 |
3198 | 4082 | 4.142687 | CGCCAGGAACAGTTAAAACCATAG | 60.143 | 45.833 | 0.00 | 0.00 | 0.00 | 2.23 |
3204 | 4088 | 2.351706 | ACCGCCAGGAACAGTTAAAA | 57.648 | 45.000 | 0.00 | 0.00 | 41.02 | 1.52 |
3273 | 4158 | 6.426025 | TGATGCTCAAGAGACATATATTGCAC | 59.574 | 38.462 | 0.32 | 0.00 | 0.00 | 4.57 |
3353 | 4240 | 7.629222 | AAAATGTATTTTGTGCTAGCTAGCCAG | 60.629 | 37.037 | 36.45 | 8.75 | 41.96 | 4.85 |
3354 | 4241 | 6.152661 | AAAATGTATTTTGTGCTAGCTAGCCA | 59.847 | 34.615 | 36.45 | 29.89 | 41.96 | 4.75 |
3355 | 4242 | 6.564328 | AAAATGTATTTTGTGCTAGCTAGCC | 58.436 | 36.000 | 36.45 | 28.01 | 41.96 | 3.93 |
3451 | 4339 | 1.725164 | GGAAGACGTTAGCGAAACAGG | 59.275 | 52.381 | 5.81 | 0.00 | 42.00 | 4.00 |
3484 | 4372 | 7.518211 | GCATCTGTTCAACACATATATTGCGTA | 60.518 | 37.037 | 0.00 | 0.00 | 33.76 | 4.42 |
3506 | 4394 | 3.535860 | GACGCGTTAATCTGAATGCATC | 58.464 | 45.455 | 15.53 | 0.00 | 40.68 | 3.91 |
3509 | 4399 | 1.586578 | TCGACGCGTTAATCTGAATGC | 59.413 | 47.619 | 15.53 | 0.00 | 37.87 | 3.56 |
3510 | 4400 | 2.345470 | CGTCGACGCGTTAATCTGAATG | 60.345 | 50.000 | 26.59 | 0.00 | 0.00 | 2.67 |
3568 | 4458 | 3.706802 | TTTGCACACATCACATTCGTT | 57.293 | 38.095 | 0.00 | 0.00 | 0.00 | 3.85 |
3588 | 4479 | 3.056607 | GTGCACAGCAAGGAATTAACCAT | 60.057 | 43.478 | 13.17 | 0.00 | 41.47 | 3.55 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.