>input_sequence_46427
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-----------ATGCCCCAGCTCGCCGCCTCCCCCGCGGCCGCCGCCTTCGCCGTCGCGGGCGGCGG---CCGCGCCGGG
TTCCGGCCCCCACCCCGCGCGCCGATGCGGGCGCGGGCGGCTGCTGCT---GCTTCCGGAGCCGCGAGCGCGTACACGGC
GATGCCGGCGGCGCAGCAGCAGCAGCCGCAGCCGACGTTCTACGACCTGCTGGGGATCTCGGCGGAGGGGAGCAGCTTCG
AGGACGTGCGGGCGGCGTACCGGCGGATGGCGCGCAAGTACCACCCGGACGTGTCCCCCCCGGACGCCGCCAAGGAGCAC
ACCCGCCGCTTCATCCAGGTGCAGGAGGCCTACGAGACGCTCTCCGACCCCAGCCGCCGCACCACCTACGACCGCGCCCT
CGCCCGCGGCGTCTGCCGCCTCGCCTTCTCCCCGGCCGCACGGCGCCACGACGCCTCCGCCTTCTACCACCAGGTTCCCA
--------CCCACTCTGCCTGTCTCCTCCGTCTCCATATCT---------CTGTTACTTCCTTCTTCTTTTCCGTGGATG
ATAATGG-ATGGAAATTGTCTGCATCACGGTCTGCTCCTCGAATTAATTCCTGACCACGTCTCAATCCGTCTGTGGTTTC
ACCTCGCTGTACACTTGTATTTATCTT-------ATTATAATTAATCCTTCAAACTGCACTATGCAATTGCAAACTTGTT
GGATTCAGATGGTTTTACAAATGAGCTTCACATTTTGATGCTCTGCTTCTGCATACAGACTTTGGCTTGTGTTA------
---------------ATTTTGGGCTAATCCTCGATATATTTAACAAGATTCCTCAACAAAACACCTCGATAATTCTGTGC
TAGCCAATTTATTCAGTTATAAGACACCTGTAAACTCATAGTTTAGCATATCATTCATG---------------------
--------TGGGATCCAGCCTGGCTTGAGATGGCTGGCTGGCTGGCTAATCCAGGAGTATTCTAGGACTGGGGG-AAAAA
TACTTGATTGGAGATCTTCTAGTTT--------ATTAGAACCCAATATTTGGTGTTTGACGACTAACCACTCCATATGCT
-------------------------------TGATGTATGACCTTTCAATCACAAACAGACAGAATAAGAAATACAGAAA
CCCTCCCTTA-TGCGATGTTATAAACGGATATGAATGAATTCAGCGGGTGTCAAATATATGCATGTGTGGCATGATGATG
GCTGGTGTCTGTTCAGATGGATTTAGAGAAGTCATTTTCATGTTAATAATTTGGAGAAG-AAAAGAAGGGATCGATTGAG
TGAGATATGTTAATTTGGTGTTGTCAGATTTGACAAGAAATCCAAAAAGGATTAATAATTTGAAAGTTGTGTC-------
--CTCCGTGTAAGGTTGAAAATTGCAGGAGTGAGCTATCTTTGGTGATGTCTCTTTTCATATCACTATTGATGATGTTGA
ATTAACAATGCCCGTGCCAATTGTCAACCATTGCTTTGTCATGCTCTTTGCG--AAGTTCCAACTTGCTGTAGAGCTTTC
TCTTTCTCCACACTAACTTCTTTCCTTTGTGAACCATACCACAGGAGCAGGAAGAGAAGTCTGGATGGAGGACGTCCTGG
GAAGGCCAAATATCCGAGCTGAAGAAGCGGAGCACGGTGAAGGACGCAGAAGAGAACCTATCCTGGGGAGCTCAGATGCG
AAGAAGAAGGGCCGAACAGTCGTGA-------------------------------------------------------
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>chr3D_1_TraesCS3D01G083700
CCCTGCCCCTTTTGTTGTTAACATATATTTCTGCACTTTGCAACTCTTTTGCCATGCACAAAGGTCGTTTGTGGTTAAGT
ATGTTGGTTGAAACGGTCTAAATATGTATGCATGCATGTATGTGTATGCTTTTGTTTCGCGTGTGATTATATATGTCGCG
TATGTGTATGCTTTTGTTTCGCGCGTGATTAGTATATCGCATTGTCTAAAG-TTTTGGCATGACCAACAGCTAGGATCAA
GACTAACACGTCGACGTCTTATCGTCGTGCATACC---------------------------------------------
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------------------------------------------------------------------------------TG
TGAATATATTGCTTGGACGAATGTGATGCGTGTAGACCTAACCAATGGCAGTTCCTTGCTGAGTTGCTTGTGGGCTATCA
GCGTTCACGTTCGTTTGACATGGTCTAGCTAGGCATGCGTT-----CCTGGTTTTGTATTGTTTTCACATATATGGTTGG
GTGCGTCGTTAGGGTTCGTTCGG------------CTAGACGAGGAAGAAATGAAAGATGGCTCCAAGTAATAATAATAC
CGTCCAAGATGGTATAATCTCCCTGTGCC--------------------------GGACAAAACGGCCAGACGTGTGGAA
ATAGTCCATGTATAATCTCCTCTCTCTCTTTTTTTAAAGTGAAAAACGGAGAAAACTTTACAGCCACCGATGCATGGATT
CTGGAAACTACTGCTGGACCTGGAC-----GTGTGCACAGCATCCAACACGGAACCCATAGCACATAAAATCG-------
--GCTTGTTTTCATATGCAAAACAGTAATT---CTTGACAATTTTGCTGGTTCTAGGCCAACACCG-----CAAGCCAAC
ACATCAACAAGGGGGAG--AGAAGCGGACGATGGCCGGAAAGCGACTCCACACATATCTTGGAG--A----TCTCTCTCT
ATATCTTCTCCACTCCACGCCCCCCTCTCCCAATTAAAAATTGCAGCACCACCACTCTCTGCTCCTACGGCTAAGCG---
-AAGCGCGAAAGCTAAGCAGATCAGATCAGATCAGCTCAGGTGGAGCTGACACACAGACAGAGATCCAACCCAGTGC---
-------ACACATGCCCCAGCTCGCCGCCTCCCCCGCGGCCGCCGCCTTCGCCGTCGCGGGCGGCGG---CCGCGCCGGG
TTCCGGCCCCCACCCCGCGCGCCGATGCGGGCGCGGGCGGCTGCTGCT---GCTTCCGGAGCCGCGAGCGCGTACACGGC
GATGCCGGCGGCGCAGCAGCAGCAGCCGCAGCCGACGTTCTACGACCTGCTGGGGATCTCGGCGGAGGGGAGCAGCTTCG
AGGACGTGCGGGCGGCGTACCGGCGGATGGCGCGCAAGTACCACCCGGACGTGTCCCCCCCGGACGCCGCCAAGGAGCAC
ACCCGCCGCTTCATCCAGGTGCAGGAGGCCTACGAGACGCTCTCCGACCCCAGCCGCCGCACCACCTACGACCGCGCCCT
CGCCCGCGGCGTCTGCCGCCTCGCCTTCTCCCCGGCCGCACGGCGCCACGACGCCTCCGCCTTCTACCACCAGGTTCCCA
--------CCCACTCTGCCTGTCTCCTCCGTCTCCATATCT---------CTGTTACTTCCTTCTTCTTTTCCGTGGATG
ATAATGG-ATGGAAATTGTCTGCATCACGGTCTGCTCCTCGAATTAATTCCTGACCACGTCTCAATCCGTCTGTGGTTTC
ACCTCGCTGTACACTTGTATTTATCTT-------ATTATAATTAATCCTTCAAACTGCACTATGCAATTGCAAACTTGTT
GGATTCAGATGGTTTTACAAATGAGCTTCACATTTTGATGCTCTGCTTCTGCATACAGACTTTGGCTTGTGTTA------
---------------ATTTTGGGCTAATCCTCGATATATTTAACAAGATTCCTCAACAAAACACCTCGATAATTCTGTGC
TAGCCAATTTATTCAGTTATAAGACACCTGTAAACTCATAGTTTAGCATATCATTCATG---------------------
--------TGGGATCCAGCCTGGCTTGAGATGGCTGGCTGGCTGGCTAATCCAGGAGTATTCTAGGACTGGGGG-AAAAA
TACTTGATTGGAGATCTTCTAGTTT--------ATTAGAACCCAATATTTGGTGTTTGACGACTAACCACTCCATATGCT
-------------------------------TGATGTATGACCTTTCAATCACAAACAGACAGAATAAGAAATACAGAAA
CCCTCCCTTA-TGCGATGTTATAAACGGATATGAATGAATTCAGCGGGTGTCAAATATATGCATGTGTGGCATGATGATG
GCTGGTGTCTGTTCAGATGGATTTAGAGAAGTCATTTTCATGTTAATAATTTGGAGAAG-AAAAGAAGGGATCGATTGAG
TGAGATATGTTAATTTGGTGTTGTCAGATTTGACAAGAAATCCAAAAAGGATTAATAATTTGAAAGTTGTGTC-------
--CTCCGTGTAAGGTTGAAAATTGCAGGAGTGAGCTATCTTTGGTGATGTCTCTTTTCATATCACTATTGATGATGTTGA
ATTAACAATGCCCGTGCCAATTGTCAACCATTGCTTTGTCATGCTCTTTGCG--AAGTTCCAACTTGCTGTAGAGCTTTC
TCTTTCTCCACACTAACTTCTTTCCTTTGTGAACCATACCACAGGAGCAGGAAGAGAAGTCTGGATGGAGGACGTCCTGG
GAAGGCCAAATATCCGAGCTGAAGAAGCGGAGCACGGTGAAGGACGCAGAAGAGAACCTATCCTGGGGAGCTCAGATGCG
AAGAAGAAGGGCCGAACAGTCGTGACATCGATCCTCTGACACGCCATACG-CACTAGCCATCCGTAGCATCTACTAAACT
GTGTATATCTTCGAGTAGCA-AAGTTAGAAAGGTTATGATTAAGAAGCATGGTTAGGATCGGACTACAGCAGCACTAGCT
CAACGATGTCACAA--------------------------------------------------TTTGAGTGGGTTCCAG
GCTGCATGTAAACCTCAACGATGTCGCTCCTCCTTGAATCTTTGCCTGATGAAATGTAAATATAATGAGACAGAAG-TAA
TCAAATCTAGCTGTACTACGAACTGACGATTTGACCAGTGGAATTTTCTTGAGGTGATGTGTTGTGTTTTTTGGTGGTTG
GAGTTGCAAAGAAAGAAAGCCATGCA--CATGGATATTCTTTCAGTGGTTTCAGATGAAGGGAGTGGTGTGGACTGTGGA
GGGACTGATGGTGTTGATTTTTTGTTTGCAGTGCACTATG---GGCCACCCGTTAGGCAAAGTCATGTTGGTGATGGCTG
ATGGATATCCTTCTGGATGTGGCTGTGGTTGATGACTCAACTGGACTTATCTATGGATGGAGTGAAGATGCAGTGTCCTT
TCTATGGTTTTAACTGTTCCTGGCGGTTTGACTTTTTATCTG-CACACAATTTTTTCAGTTTCTAGAGTCTTTTTTTG--
TGCAATATATGTCTCTTGAGCATCAAGAAATAGGCCAACCTCTCCACCGTGGAAGAAAAGAAATGGACAACTACTTTAGC
TGGCTAGCTAGCACAAAATACATTTTACTCAACAAAAAAGTGGTTCATTTATGCTATTTTTATTTCCTCCATGAGCA-TT
TTTTATTATCTTGTATCGCCTGTTTCGCTAACGTCTTCCTATATGTATATGTACGCAATATATGTGTTGAACAG--ATGC
ATTCAGATTAACGCGTCGACGTCTTATCGTCGTGTATATGTGCTAACATATTTGTTCAA-CGAATGTGATGTGTGCAAAT
GGTTAATTCCTTGCTGTGCACACGAGTTGCTTGTGGGTTATCGTTCGTTG------------------------------
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>chr3B_87
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------GTTGACACGGTCTAAATTATGCCTAAAAATATT-----TATGCTTTTGTTTCGCGTGTGATTATAT--------
----------------------------TTATTATATCACATTGTCTAATTTTTTTGGCATGATCAACAAAGAGG---AA
GATTAACGCGTCGCGTGCACCCTCATCGGTAGTATAGTAATTGCTTGTTTGTGGGTTATCCATGCTCGTTGACATGGTCT
AGGATTGCATGCGTGATTTTTTGTATTTCGTTTCATATGTGGTTGGATATCTCGATAGGTTTGTGCTCTAAGTATGACCA
GACGAGGGAGAAGAGCAAGATGGATCTAATTATACAATCATCTTTATACCTGATCAAAAGTCAGTCCGAACACGATAAGA
ATAGGGAGCTCTTTGTCTGGTCCATTTGGAAGGGACAAGGACTTGGGAGTCAAGTGGACGCGTTGCGAAAACGAAAATAA
GCTAATCACTGTTGCTTTAATGACCTTGTTGTCATCTTGATGCAAAAAAGATCAATGCGGGTGGTTGCAGACTTCGCGGA
CGTGCTCACCTCCATTGCATCCCTACTTGACAAGGACCAGGCACGTGGAAATTGTCAATGTGCAATCATATTTTGCAATC
CCCGCAAAACAAAATTAATCTTATTTTATAAGTGAAATGGAGAAAAAATTACAACCAATTATGCATGAATTCTTGAAGGT
ACTTCTGGACCTGGATGTGTGCACAGCATCCAAAATGGAACCCTTGACATCCAACATGGCCGTGTATATATATATGTATG
TAAATTTATTACTTGGACGAATGTGATGGGTGCACCCCTAGCCAATGGTAATTCCTTGCCGTGTTGCTTGTGGGCTATCA
------ACCTTCGTTTGACATGGTCTATCCAGGCATGCACAGCACGCCTGGTTTTGTATTTGTTGGG------TGGGTGG
GTGCGTCGTTAGGGTTCGTTGGGCAGCAGCTTTGACTAGACGAGGAAGAAATGCAAGATGGCTCCAAGTAATAATGATGC
CGTCCAAGTTGGTCAGAGGTGACAAGACGCGGCAGAGTGGACGCATGCCCGTGCGGGACAAAACGTACAGACGTGTGGAC
AGTGGCTATGTATAATCGTCCTCTTTTTTAAAAAAAAAGTGAAAAATGGAGAAAAATTTACAGCCACCGGTGCATGGCTT
CTGGAAACTACTGCTGGACCTGGCCTGGATGTGTGCACGGCATCCAACACTGAACCCACGGCACATAAAATTGCTCTC--
-------GTTTCAGACGCAAAACAGTAATT---CTTGACAATTTTGCTGGTTCTAGAGCAACACACAGCAAGGTG-----
-------------------------GGACAATGGCCGGAAAGCGACTCCACACATATCTTGGAGGGAAATCTCCCTCTCT
ATATCTTCTCCACGCCCCCCTCTCCCCCCCTAATTAAAAATTGGAGCACCACCACTCTCTGCTCCTACGGCTAAGCCAAG
CAAGCGCGAAAGCTGAGCAGATCAGATCAGGTGGAGCTG----------------AGACAGAGATCCGACCCGGTGCACC
AGGCCGCACACATGCCCCACCTCGCAGCGTCCCCCGCGTCCGCGTTCGCCGT---------------------CGCCGGG
TTCCGGCCCCCACCCCGCGCGCCGACGCGGGCGCGGGCGTCTGCCACG---GCCGGAGGAGCCGCGCGCACGGCCA----
-----CGGCGGTGCAGCAGCAGACGCAGCAGCCGACGTTCTACGACCTGCTGGGGATCTCGCCGGAGGGGAGCACCTTCG
AGGACGTGCGGGCGGCGTACCGGCGGATGGCGCGCAAGTACCACCCGGACGTGTCCCCGCCGGACGCCACCAAGGAGCAC
ACGCGCCGCTTCATCCAGGTGCAGGAGGCCTACGAGACGCTCTCCGACCCCAGCCGCCGCACCAGCTACGACCGCGCCCT
CGCCCGCGGCGTCTGCCGCCTCGCCTTCTCCCCCGCCGCGCGCCGCCACGACGCCTCCGCCTTCTACCACCAGGTATTAA
TCAACCAGCCCACTCTGCCCGTCTCCTCCGTCTCGATATCT---------CTGTTCTTTCCTGTC---------TGGATA
ATAATGGAATGGAAATTGTCTGCATCATGGTCTGCTCCTCGAATTAATTCCTGACCACGTCTCAATCCGTCTGTGGTTTC
ATTCACCTCG----TTTTATTTATCTTACTTATAATTATTATTAATCCTTCAAACTGAATTCTACGAG----AACTTGTT
GAGTTCAGATGGTTCCACAAATGAGCTTCACATTTTGATGC------------------------CTTGTGTTAATACCT
GA------TAGTAACATTTTAGGCTAATCCTCAATATATTTAACAAGATTCCTCAATAAAATACCTCAATAACTCTGTGC
TAGCCTATTTATTCAGT--TAAGACACCTGTTAACTCACAGTTTAACATATCAGTCATG---------------------
--------TGGGATCCAGCCTGGCTTGAGATGGCTGGCTGGTT----AATCCAGAAGTATTCTAGGACTGAAAAAAAAAA
TACTTGATTGGAGATCTTCTAGTTT--------A---GATCCCAATATTTGGTGCTTGACGACTAACCACTCCATATGCT
TGATGCTTGACGACTAACCACTCCATATGCTTGATGTATCACCTTTCAATCACAAACAGACAGAATAAGAAATACAGAAA
CCCTCCCTTA-TGCAATCTTATATATGAATATGAATGAATTCAGCGGATGTAAAATATATGCACATGTGGCATGATGATG
GCTGGTGTCTGTTCAGATGGATTTAGAGAAGTCATTTTCATGCTAATAATTTGGAGAAG-AAAAGAAAGAATCGCATGAG
TGAGATTTGTTAACTTGGTGTTGTCAGATTTGACACGAAATCCAAAAAGTATTAATAATTTGGAAAGTGGTGTGTCCTAC
GTCTACGTGTATGGATGAAAATTGCAGGAGTGAGCTATCTTTGATGATGTCTCTTTTCGTATCACTATTGATGATGTTGA
ATTAACAATACCCGTAGCAATTGTCAACCATTGTTATGTCATGCTCTTTGCGAAAAGTTCCAACTTGCTGTAGATCTTTC
TCTGTCTCCACACTAACTTCTTTCCTTTGTGAACCATACTACAGGAGCAGGAAGAGAGGTCTGGATGGAGGACGTCCTGG
GAAGGCCAAATATCCGAGCTGAAGAAGCGGAGCACGGTGAAGGACGCAGAAGAGAACCTATCCTGGGGAGCTCAGATGCG
AAGAA---GGGCTGAACAATTGTGACAGTGCTCCTCGGACACTCTTATGTCCACTAGCCATCCGTAGCATCTA---AACT
GTCTATATCTTTGAGTAGCAGAAGTTAGAAAGGTTATGCTTAAGAAGCATGGTTAGGATCGGAGTTACAGCCATGGCGCT
GCTCGAGCCTTGCCTGGTGTATGTTAAACCATACTACCATACATAGCTCACAGCAAACATATAGTTCGAATAGGTGCCAG
GATGTATGTCGAACCCAACGATGTCGCTCCTCCTTGGATC-TTACCTGATGAAATGTAAATATAATGAGACAGAAAATAA
TCGAAGCTAGTTGTATTTTGAGTCCATGATTTGACTCGTGGAATTCTCTTGAGGTGATGTGTTGTGCTTTTTAGTGGTTG
GAATTACGAAGAAAGGAAGCCATGTGTGCATGGATATCCTTTCAGTGGTTTCAGATGAAGGGAGTGGTGT----------
-GGACTGATGGTGTTGATTTTTTGTTTGCAGTGCACTATG---GGCCACCCGTTAGGCAAAGTCATGTTGGTGATGGCTG
ATGAATATCCTTCTGGATGTGGCTGCGGTCGA-GAGTC-ACTGGACTTATCTATGGATGGAGTGAAGATTCAGCATCCTT
TGTATGG-TTTAACTGTTCCTGGCGGTTTGAGTTTTTATCTG-CACACAGTTTTTTCAGTTTCTAGAGTCTTTTTTTTTA
TGCAATATATGTCTCTTGGGCATCAAGAAAAAGGCCGACCTCTCCACCGTGGAAGAAAAGAAATGGACAACTACTTCA--
--GCTGGCTAGCACAAAATACATTTTACTCAAGAAAAAAGTGGTTCATTTATGCTGTTTTTATTTCCTCCATGAGCA-TT
TTTTATTATCTTGTATCG-CTGTTTCGCTAACGTCTTCCTAAATGCATATGCACGCAATGTATGTGTTGAACAA--AT--
ACTCAGATTAACGCGTCGACGTCTTATCGTCGTGTATATGTACCAACATGTTTGTTCGA-CGAATGTGATGTGTGCAA-T
GGTTAATTACTTGCTGTGCACACGAGTTGCTTGTGGGTTATCAACGTTCGTTGCCATGGTCTAGCTAGGCACGCACGCCT
GATTTTGTATTGTTTCGTAGTACTATATGGGTGGATATGTCATTAGGGTTCTTTCGAAAGCAGCTTGACTAGACGAGGAA
GAAATTCAGTTGGACGATACTGTCTTCACGGGAACGTGTCGGCTGTTTTGTGCGGTATTGAACACGGCCTCGAAAAGGGT
GCATATATTTTGGCTACCGAAAGGCTGGATGACCTTATCCTTTAATGGATCTTTTGTCAAGGAAACCGGGGAATCAGGAA
CCAGTATGATTCTCAGAGATTCAAAAGGATCGGTAATCTTTGCAGTTTATAGATACTTGTTCAATTGTAATGACGCAGTG
GAGGTGGAGATCAAGGCAATCATAGAGGGTCCGATTCGTTGATATAGCAATCCAAAGCCCCCATCGTGATCCTGTCTGAC
AATGTTGATGCCATTGCGGCTCCTGCTCTGCTCTGCGTATGGTCATTTGATAACCAAAATCAAGCTTCTCAGAGTTTATT
CCTATGAAGTCAAGTCGTAATCAAAATAGAGTAGTTGATAGTCTTGTTAATATCGGTCGGTCTGAAGGTAGCACCGCTTG
TTAGTTGCCCCAGCTCCTAGACAGTGTTTCAGACCTCTATTATCTTGGAAAGAAATTTTCTTTAGCCTTGAAAAGAAAAA
GTCAGTAGGACCATGATAAGACCGACAAGAGTGGACGCATGTTTGTGCGGCTCCATTTGAAAGCAACAAGGACCAGACGT
GTGGAAAGAGTCCATGCATAACCTATTTTTTTTCTAGTGAAATGGAGGATAATGTACAGCCACCGATGCATGAATTCTGG
AAGGTGCTGCCGGACCTGGATGTTGCCCAACATCCAACATGGAACTCATATAGCACACACACAAAAGAATGCTTGCTTGG
TTTCAGATAGATAGATGAAAACAGAATCCTATGGTACCGCAAACGAGAGCCGTGGTTTAGTGCCCGGGTGCATCTGCATC
TGCATCTACTCCCTCTGTTTCTAAATATTTGTCTTTTTAAGATTTCAAATGGGCTATCACATACAGACGTATATAGACAT
ATTTTAGAGTGTAGATTCACTCATTTTGCTTCATATGTAGTCACTCGTTGAAATCTCTAGAAAAACAAATATTTAGGAAC
GGAGGGAATAGGTGTGAACAGTAAATTAAAATAAAATAGTAAAAAGGTTAAAATTCTGATATTTTTTTTCATTCAAGATG
TTTGAATGCGTGTAGAAATTATGTTGTTTGAACAGTCAAGGAGGTTGCCAAAACGAAACAAATTTTGACTGAAATAAACT
TTGAAAAAGAACACTGTTTGAACTTGATTTGTTTTCCTAGCGCTTCTCGAATGTCCAAACACCACGAAAAGTTGCACTCG
CCTTGTACATCCGACCATCTTGGATGCCAATAAAAAAAAGAAGCCATGCTCGCATAGACATCCTTTCACTGTTGATTTTT
GTTTGCAGTGTACTATGGACCACCCGTTAGGCAAGTCATGTTGGTGATGGCTGATGGATAT
>chr3D_597
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-------------------------------------------AAATGGAGGAAAATGTACAGCCACCGATGCATGGATT
CTGGAAGGTACTGCCGGAGCTGGAT-----GTA-GCACAACATCCAACATGGAACTCATATAGCACAAAAAAAAAAATGC
TTGCTTGGTTTCTGATAGAGGAAAACA-----------------------------------------------------
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-GAATCCTATGGTACTGCAAACGAGAGCCATGATTTGGTGCCCAGG---TGCATCTGCACTTGGGCGTGAACAGTAAATT
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----------------------------------------------------CAAATAGACTAATTTAAAATTTAAGAAA
AAACTGATTTTTTGTCATCCAAGATGT------------TTGAATGCATGTAAAATTTATGTTGTTTTGGACATTCAAGG
AGGTTGCCCCAAAAAACAAATTTTGACTGTGAAAGAAACTTT----------------GAAAAAGAACACTGTTTGAACT
TG------------------------------------------------------------------------------
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-----------------------------ATTTGTTTTCCTAGCGCTTCTCG--AATGTCCAAACACCACGGAAATTTGC
ACTCGCCTTGTACATCGGAGCATCTTGGATGCCAAT--------------------------------------------
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-------AAAGAAGAGAAGCCATGCTCGCATAGATATCCTTTCAGTGTTGA-----------------------------
------------------TTTTTGTTTGCAGCGTACTATG---GGCCACCCGTTAGGC-GAGTCATGTTGGTGATGGCTG
ATGGATATACTCCTGGATGTGGCTGTGGTTGATGACTCA-CTGGACTTAGCTATGGGTGGAGTGAAGATGCAGTATCCTT
TGTATGG-TTTAACTGTTTTTGGCGGTTTGACTTTTATCTGCACACAAAGTTATTTCCGTTTGCAGAGTCTTTTTTAC--
-GCAATATATGTCTTTTGAGCATCAAGAAATGGGCCGACCTCTCCACCGTGGAAGAAAATAAATGGACAAATACT-----
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>chr3A_695
AGATTAACGCGTCGACGTCTTATCGTCGTTTGCTTGCGTGTGTAGTAATTTTCTTGTGATTTGTGCGTCCCTTGCCGTGC
GCACGAGTTGCTTGTTGACACGGTCTAGGTATGCATGCGTGTTTTTTTTTTTTTTTGTATTTCATATTTCGTTTCATGTG
TGGTTGGATGTCTCGAGAGGCAGGTTTGTGCTTCAAGTATGAATAGACGAGGAGGAAGGGCAAGGTGGAGCTAATGTAAA
TAATACCATCATATTAGACCTCATCAAAAGTCAGTCGGAACACGATAATTATAGGGAGCTCTTTGTCTGGTCCATTTGGA
AGGGACATGGACTTGGGATGCAAGTGGACGGGCTGCGAAAACGAAAATAAGCTAATCACTGTTGCTTTAGTGACCTTGTT
GTCTTGATGCAAAAAAGATCAATGCGGGTGTTTGCAGACTTCGCGGACGTGCTCACCTGCACCAAGGAGGACCAGACAAG
TGGAAATTGGCAATGTGTAATCATATTTCACAATCCCCGCAGGCCGCAGAACAACATTAATCTTATCTTACAAGTGAAAT
GGAGAAAAACATGCCACCACTCATGCATGAATCCTTGAAGGCACTGCTGGACATGGATGTGTGCCCTGCATCTAGCATCC
AACATGGGCGTGTGTGTATATGCATGCAAATATGTTTCTTATGGAAATAGCATGGAATGAGGTTTGATCCTATTCATGAG
GATTCCCTAAATGTCTCATTTCAAAAACCGAAACAATCGGGACTTTTCGGAGATTGGATGCAGTTACTAATTCATGATCT
AGCATGTACAGAATGAAAACTTCATTCTCGATTCTATGAGAATTTTCATGAAAACGTTTCATTTGCTTCTCTTCAATAAA
AGTTCCATTTTCCCAGAATGGACCGAATGTGATGCGTGCAACAGTGGTAATCCCTCTGCAACGTTCGGTGATATGGAATG
CATGCCTGTTTTTTATCGTTTTCATGTACTCCCTCCGTTCCAATGGTTGGATGCGTCGTTAGGGTTCGTTGGGCAGCAGC
TTAACTAGGCGAGGAACAAATGCAAGATGGCTCCAACTCAAGTCATAATAACACCGTCCAAGTTGGTCAGAGGTGACAAG
ACGGGGCAGAGTGGACGCATCCTTGTGCGGGACAAAATGGACCAGACGTGTGGAATATAATCTCCTCTCTTTTCTAAAGT
GAAAAACGGAGAAAAAT---------------------------------------------------------------
-----------------------------------------------------------------------CG-------
--GCTTGGTTTCAGATGCAAAACAGTAATAATCCTTGACAATTTTGCTGGTCGTAGGCCAACACCGCGAGCCAAGCCAAC
ACATCAACAAGTGGGGTAAAGAAGCGGACAATGGCCGGACAGCGACTCCACACATATCTTGGAGAAA----TCTCTCTCT
ATATCTTCTCCACGCCCCCCTCGCTCCC---AATTAAAAATCGCAGCACCACCACTCTCTGCTCCCACGGCTAAGCAAAG
CAAGCGCGCACGCTAAGCAGATCAGATCAGGTCAGGTCAGGTGGAGCG--------------------------------
-------ACACATGCCCCAGCTCGCCGCCTCCCCCGCGCCCGCCGCCTTCGCCGTCGCGGGCGGCGGGGGCCGCGCCGGG
TTCCGGCCCCCGCCCCGCGCGGCGACGCGGGCGCGGGCGGCGGCGGCCGCCGCTTCCGGAGCCGCGAGCGCGTACACGGC
GGTT------------------CAGCAGCAGCCGACGTTCTACGACCTGCTGGGGATCTCGGCGGAGGGGAGCAGCTTCG
AGGACGTGCGGGCGGCCTACCGGCGGATGGCGCGCAAGTACCACCCGGACGTGTCCCCGCCGGACGCCGCCAAGGAGCAC
ACCCGCCGCTTCATCCAGGTGCAGGAGGCCTACGAGACGCTCTCCGACCCCAGCCGCCGCACCACCTACGACCGCGCCCT
CGCCCGCGGCGTCTGCCGCCTCGCCTTCTCCCCCGCCGCGCGGCGCCACGACGCCTCCGCCTTCTACCACCAGGTGCGTA
CATACATACATACGTCATCTCCACCATTTCCTCTCCTCCAGCTCGTCAAACTGTTACTTCCCTTTTTAGATAATA--ATA
ATAATGG-ATGGAAATTCTCCGCATCATGATCTGCCCCTCAG----ATTCCTGATCGCAACTGAATCCCCCTGTGGTTTT
AATTCAAATTGTTGTCT---------------------TAGTTAATCCTTCAAAC-------------------CTTGTT
GGATTCAGATGGTTTTACAAATGAGCCTCACATTTTGATGCTCTGCTTTTGTATGCAGACTTTGGCTTGTGTTAATACCT
GAACCTGATAGTAACATTTTAGGCTAATCCTCAATATATTTAACAAGATTCCTCAATAGAAAACCTCAATAACTCTGTGC
TAGCTTATTTATTCAGT--TAAGACACCTGTAAACTCATAGTTTAGCATATCATTCATGTGGGATCCTAGTTTAACATAT
CATTCATGTGGGATCCACCCTGGCTTGAGATGGCTGGCTGGCT----AATTCAGGAGTATTCTAGGACTAGGGAAAAAAA
AACTAGATTGGAGATCTTCTAGGCCTCCTCAACA---GATCCCAATATTTGGTGCTTGACGACTAACCACCCCATATGCT
-------------------------------TGATGTATGACCTTTCATTCACAAACAGACAGAATAAGAAATACAGAAA
CTCCCCCTATGTGCGATGTCATATACGAATATGAATGAATTCGGTGGATGTAAAATATATGCACATGTGGCATGATGATG
GCTGGTGTCTGTTCAGATGGATTTAGAGAAGTCATTTTCATGCTAATAATTTGCAGAAGAAAAAGAAAGAATCGCATGGG
TGAGATTTGTTAATTTGGCGTTGTCAGATTTGACAAGAAATCTAAAAAGATTAATCATTTGGAAAGTGGTATC-------
--CTACGTGTATGGATGAAAATTGCAGGAGTGAGCTATCTTTGGTGATGTCCCTTTACATATCACTGTTGATGATGTGGA
ATTAACAATGTCCATGGCAATTGTCAACGATTGG-TTGTTATATTCCTTGCG--AAGTTCCAACTTTCTGTAGAGCTTTC
TCTTTCTCCACGCTAACTTCCCGCCTTTGTGAACCATACCACAGGAACAGGAAGAGAAGTCTGGCTGGAGGACATCGTGG
GAAGGCCAAATATCCGAGCTGAAGAAGCGGAGCACGGTGAAGGATGCAGAAGAGAACCTATCCTGGGGAGCTCAGATGCG
AAGAAGAAGGGCCGAACAATTGTGACAGTGCACCTCTTACACTCTTATGTCCACTAGCCATCCGTAGCATCTA---AACT
GTCGATATCTTTGTGTAGCAAAAGTTAGAAAGGTTATTCTTAAGAAGCATGGTTAGGATCGGAGT-ACAGCCATGGCGCT
GCTTGAGTCTTGCCTGGTGTATGCTAAACCATACTACCATACATGGCTCACAGGAAACATATAGTTCGACTAGGTGCCAG
GATGTATGTTGAACCCAACGGCGTCGCTCCTCCTTGAATCTTTACCTGATGAAATGTAAATATAATGAGACAGAAG-TAA
TCAAATCTAGTTGTACTATGAACTGACGATTTGACCAGTGGAATTTTCTTGAGGTGATGTGTTGTGTTTTTTAGTGGTTG
GAGTTGCAAAGAAAGAAAGCCATAG--GCATGGATATTCTTTCAGTGGTTTCAGATGAAGGGAGTGGTGTGGACTGTGGG
GGGACTGATGGTGTTGATTTTTTGTTTGCAGTGTACTATTATTGGCCACCTGTTAGGCAGAGCCATGTTGGTGATGGCTG
ATGGATATCCTTCTGGATGTGGCTGCGGCTGACGAGTC-ACTGAACTTATCTATGGATGGAGTGAAGATGCAGTATCCTT
TGTATGG-TTTAACTGTTCCTGGCGGTCTGACTTTTTATCCG-CACACAGTTTTTTCAGTTTCTAGAGTCA--TTTTTTA
TGCAATATATGTCTCCTGAGCATCAAGAAATAGGCCCACCTCTCCACCGTGGAGGAAAAGAAATGGACAACTACTTCA--
--GCTAGCTAGCACAAAATGCATTTTATTCAACGAAAAAGTGGTTCATTTATGCTATTTTTATTTCCTTCATGAGCATTT
TTTTATTATCTTGTATCG-CTGTTTTGCTAACGTCTTCCTATATGTATATGCACACAACATATGTGTTGAACAAACAT--
ATTCAGATTAACGCGTCGATGTCTTATCGTCGTTTATGTGTACTAACATATTTGTTCGAGCGAATGTGATGTGTGCAA-T
GGTTAATTCCTTGCTGTGCACACGAGTTGCTTGTGGGTTATCAATGTTCGTTG---------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------
>SNPs
SSS-SSS-SSS-S-SS--SSSSSSS-SS--SSSSSSSS--SSSSSSSS--SS-S--SSSSSS-SS---SSS-S-SSSS-S
SSSSSS-----S-----------SSSSSSSS-SSSSSS-SSS-S----------------------------S-SSS-S-
-SSS--S---SS-SSSSSSSSS-SS-SS---S------S------------------------S-----------S-S--
--S----------SSSS-SSSSSSSSSS-S-S-SS---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----S----S-----------------S-----SS------------S-S--------S-S------------------
SSSSS---S------------------S----------SSS-------------------SS---SSSS-SSS---S---
--------------------S--------------------------------S--------------------------
--------S----SSS-SS---------S------------------------------------S-------------S
-S--S------------SS-SSSS-S-S-SSSSSS-----------S--------S------------------------
--------------------------------------------------------------------------------
-------S-----S------------------------------------------------------------------
-----------S---SS------------S--------------------------------------------------
-------------S--S-S-S-S--S-S--S---------------------------------------------S---
------------------------------S----S-----------SSSSSSSS------------S----S-------
--------------------------------------S-----------------------------------------
-------------------------S------------------S--S--------------------------------
-S-SS------S--------------S-----------------------------------------------------
----------------------------------------------------------S---------------------
--------------------------------------------------------------------------------
---------------------------------S-----S-----------------------------------S-SS-
---------------------------------------------------------------S--SSSS-SSS-----S
---------------------------S----------------------------------------------------
-SS--S--S-SSSS--S----------------------------------------S-S-S-S-S-SSSSS--------
------------------------------------------------S-----S-------------------------
--------------------S-----------S-----------------------S----S-----S----S-------
-----S-----------SS-------------------------------------------------------------
-------------------------------------------SSSS--------------------------S------
----------------------------------SSS--S--------------S-------------------------
--------------------------------------------------------------------------------
---------------------------S-------------------S---S-----------SS---------------
------------------------------------------S------------------------S-S----SS----
------S------------------------------------------S--------------------S---------
----S------S--S-----------------------------------------------------------------
----------------S----------------S----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------S-S------SS-S-----------S-SSSSSS-----------------------SSS----
--S--------S--------------------------S------------------------S-SSSSSSSSSSSS---
SSS---SSSSSSSS----------------------------------------------------S--S-S---S----
-S--S----SS-S-S----------------------------S------------------------------------
----------S-------S-----------------------------------------------------S-------
-------------------------S-----------------------------------------------------S
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
-S-----S-----------------------------------------S---------------------------S--
------------------------------------S---------------------------------------S-SS
SS------------------------------------------------------------------------------
------------------S--------------------------------S---------------------S----SS
-----------------------------------------S---------------S--------------------S-
------------------------------------------SS-SS-S-------------------------------
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-------------------------------------------------------------
>forward_70
--------------------------------------------------GCCATGCACAAAGGTCGTTT----------
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>reverse_2159
--------------------------------------------------------------------------------
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------------------------------------------------------------------------------CA
CCCACTCTGCCTGTCTC---------------------------------------------------------------
--------------------------------------------------------------------------------
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>forward_1001
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------GGTCTAGCTAGGCATGCGTT---------------------------------------
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-------------------------------------------------------------
>reverse_2944
--------------------------------------------------------------------------------
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---------------------------------------------------------------TGTGTGGCATGATGATG
GCT-----------------------------------------------------------------------------
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-------------------------------------------------------------
>forward_2329
--------------------------------------------------------------------------------
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---------------------------------------------------------------------TCTGTGGTTTC
ACCTCGCTG-----------------------------------------------------------------------
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-------------------------------------------------------------
>reverse_3485
--------------------------------------------------------------------------------
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--------------------------------------------CATACGCACTAGCCATCCGT----------------
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-------------------------------------------------------------
