Multiple sequence alignment - TraesCS3D01G081400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G081400 chr3D 100.000 4905 0 0 1 4905 40791675 40786771 0.000000e+00 9058.0
1 TraesCS3D01G081400 chr3A 91.131 4048 189 77 113 4092 52560868 52556923 0.000000e+00 5330.0
2 TraesCS3D01G081400 chr3A 88.694 628 41 9 4208 4810 52556811 52556189 0.000000e+00 739.0
3 TraesCS3D01G081400 chr3A 94.521 73 4 0 4093 4165 52556896 52556824 4.010000e-21 113.0
4 TraesCS3D01G081400 chr3B 90.514 1518 71 22 2610 4092 64506568 64508047 0.000000e+00 1938.0
5 TraesCS3D01G081400 chr3B 88.521 967 50 29 779 1721 64504156 64505085 0.000000e+00 1114.0
6 TraesCS3D01G081400 chr3B 87.955 880 66 18 1731 2581 64505436 64506304 0.000000e+00 1002.0
7 TraesCS3D01G081400 chr3B 85.079 630 50 26 4204 4804 64508166 64508780 1.950000e-168 603.0
8 TraesCS3D01G081400 chr3B 87.279 283 26 4 4532 4810 64416685 64416409 1.020000e-81 315.0
9 TraesCS3D01G081400 chr3B 84.186 215 24 8 3 213 64501619 64501827 2.990000e-47 200.0
10 TraesCS3D01G081400 chr3B 85.714 105 7 3 4440 4536 64422289 64422185 2.420000e-18 104.0
11 TraesCS3D01G081400 chr2B 82.828 297 22 4 1218 1512 128055137 128054868 6.350000e-59 239.0
12 TraesCS3D01G081400 chr2B 92.982 57 2 2 4155 4209 712827982 712827926 1.130000e-11 82.4
13 TraesCS3D01G081400 chr1D 87.248 149 18 1 1161 1309 411410265 411410412 8.440000e-38 169.0
14 TraesCS3D01G081400 chr1D 86.395 147 20 0 1165 1311 613832 613978 1.410000e-35 161.0
15 TraesCS3D01G081400 chr1D 92.647 68 5 0 1000 1067 613669 613736 1.120000e-16 99.0
16 TraesCS3D01G081400 chr1B 86.395 147 20 0 1165 1311 4476291 4476437 1.410000e-35 161.0
17 TraesCS3D01G081400 chr1B 92.647 68 5 0 1000 1067 4476114 4476181 1.120000e-16 99.0
18 TraesCS3D01G081400 chr1B 97.959 49 1 0 4161 4209 624639972 624639924 8.750000e-13 86.1
19 TraesCS3D01G081400 chr1B 96.078 51 2 0 4159 4209 535009904 535009854 3.150000e-12 84.2
20 TraesCS3D01G081400 chr1A 86.395 147 20 0 1165 1311 3447369 3447515 1.410000e-35 161.0
21 TraesCS3D01G081400 chr1A 92.647 68 5 0 1000 1067 3447202 3447269 1.120000e-16 99.0
22 TraesCS3D01G081400 chr1A 91.667 60 4 1 4150 4209 113434097 113434039 1.130000e-11 82.4
23 TraesCS3D01G081400 chr6A 77.737 274 45 8 2266 2525 558796694 558796423 2.360000e-33 154.0
24 TraesCS3D01G081400 chr6B 90.769 65 6 0 2453 2517 514285541 514285605 2.430000e-13 87.9
25 TraesCS3D01G081400 chr7B 94.545 55 3 0 4155 4209 22065528 22065582 8.750000e-13 86.1
26 TraesCS3D01G081400 chr7B 96.078 51 2 0 4159 4209 69712673 69712723 3.150000e-12 84.2
27 TraesCS3D01G081400 chr7B 96.078 51 2 0 4159 4209 547472483 547472433 3.150000e-12 84.2
28 TraesCS3D01G081400 chr2A 92.982 57 3 1 4154 4209 733861293 733861349 1.130000e-11 82.4
29 TraesCS3D01G081400 chr2D 91.667 60 2 2 4153 4209 62385788 62385847 4.070000e-11 80.5
30 TraesCS3D01G081400 chr5D 90.909 55 5 0 2458 2512 453889281 453889227 1.890000e-09 75.0
31 TraesCS3D01G081400 chr5B 100.000 31 0 0 2458 2488 366029622 366029652 1.910000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G081400 chr3D 40786771 40791675 4904 True 9058.000000 9058 100.000000 1 4905 1 chr3D.!!$R1 4904
1 TraesCS3D01G081400 chr3A 52556189 52560868 4679 True 2060.666667 5330 91.448667 113 4810 3 chr3A.!!$R1 4697
2 TraesCS3D01G081400 chr3B 64501619 64508780 7161 False 971.400000 1938 87.251000 3 4804 5 chr3B.!!$F1 4801

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
937 2747 1.175347 AGACGCACTCACTCTGCTCA 61.175 55.0 0.0 0.0 32.03 4.26 F
1474 3311 0.321919 TGCCAGTCCAGTTCATCTGC 60.322 55.0 0.0 0.0 42.38 4.26 F
2528 4736 0.179076 CCAGCACAGACACACACTCA 60.179 55.0 0.0 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2308 4512 0.617249 AGCTCAGCCAGGCTCTACTT 60.617 55.0 12.53 0.0 36.4 2.24 R
2660 5111 0.883833 TTTAGTCTGTCCGTCCGTCC 59.116 55.0 0.00 0.0 0.0 4.79 R
4185 6697 0.038435 TACGTCCATTTCCGCGACAA 60.038 50.0 8.23 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
387 469 6.730960 TCTCGCCATAACTTTTTACGAAAT 57.269 33.333 0.00 0.00 0.00 2.17
392 475 7.115095 TCGCCATAACTTTTTACGAAATTTTGG 59.885 33.333 10.22 1.83 0.00 3.28
404 487 6.451064 ACGAAATTTTGGGAGTCATAATCC 57.549 37.500 10.22 0.00 35.99 3.01
411 494 4.271696 TGGGAGTCATAATCCAATAGCG 57.728 45.455 0.00 0.00 38.70 4.26
427 510 8.521170 TCCAATAGCGCTATCTACATATAAGT 57.479 34.615 29.11 7.18 0.00 2.24
465 548 8.827599 CATAGTGTTTGAAAATCGTAAAGTTCG 58.172 33.333 0.00 0.00 0.00 3.95
555 684 6.487331 ACACATTATAGTCCGTGGTTCAAAAA 59.513 34.615 0.00 0.00 33.62 1.94
680 816 8.370493 TCCAGAACATCATAAAAGAATCGATC 57.630 34.615 0.00 0.00 0.00 3.69
686 822 8.768957 ACATCATAAAAGAATCGATCGATGAT 57.231 30.769 29.99 22.45 34.70 2.45
826 2617 4.717279 ACTTTCTTAACTTGTAGGCCCA 57.283 40.909 0.00 0.00 0.00 5.36
827 2618 5.256806 ACTTTCTTAACTTGTAGGCCCAT 57.743 39.130 0.00 0.00 0.00 4.00
829 2620 6.786122 ACTTTCTTAACTTGTAGGCCCATTA 58.214 36.000 0.00 0.00 0.00 1.90
830 2621 6.657966 ACTTTCTTAACTTGTAGGCCCATTAC 59.342 38.462 0.00 0.00 0.00 1.89
833 2624 6.177610 TCTTAACTTGTAGGCCCATTACTTG 58.822 40.000 0.00 0.00 0.00 3.16
834 2625 2.723273 ACTTGTAGGCCCATTACTTGC 58.277 47.619 0.00 0.00 0.00 4.01
835 2626 2.041081 ACTTGTAGGCCCATTACTTGCA 59.959 45.455 0.00 0.00 0.00 4.08
836 2627 3.290710 CTTGTAGGCCCATTACTTGCAT 58.709 45.455 0.00 0.00 0.00 3.96
838 2629 2.509548 TGTAGGCCCATTACTTGCATCT 59.490 45.455 0.00 0.00 0.00 2.90
840 2631 2.659428 AGGCCCATTACTTGCATCTTC 58.341 47.619 0.00 0.00 0.00 2.87
841 2632 1.683385 GGCCCATTACTTGCATCTTCC 59.317 52.381 0.00 0.00 0.00 3.46
842 2633 2.378038 GCCCATTACTTGCATCTTCCA 58.622 47.619 0.00 0.00 0.00 3.53
843 2634 2.099756 GCCCATTACTTGCATCTTCCAC 59.900 50.000 0.00 0.00 0.00 4.02
844 2635 3.355378 CCCATTACTTGCATCTTCCACA 58.645 45.455 0.00 0.00 0.00 4.17
889 2692 7.820648 TCTCAATATCAGTTTCAGAAAAAGGC 58.179 34.615 0.00 0.00 0.00 4.35
937 2747 1.175347 AGACGCACTCACTCTGCTCA 61.175 55.000 0.00 0.00 32.03 4.26
1031 2862 3.049674 CGGCGCCAAGAAGAGCAA 61.050 61.111 28.98 0.00 0.00 3.91
1038 2869 0.401738 CCAAGAAGAGCAAGGACCCA 59.598 55.000 0.00 0.00 0.00 4.51
1079 2911 1.062488 ACCAACCAAGTCAGCCTCCT 61.062 55.000 0.00 0.00 0.00 3.69
1081 2913 0.689623 CAACCAAGTCAGCCTCCTCT 59.310 55.000 0.00 0.00 0.00 3.69
1082 2914 0.980423 AACCAAGTCAGCCTCCTCTC 59.020 55.000 0.00 0.00 0.00 3.20
1084 2916 1.621672 CCAAGTCAGCCTCCTCTCCC 61.622 65.000 0.00 0.00 0.00 4.30
1085 2917 0.617249 CAAGTCAGCCTCCTCTCCCT 60.617 60.000 0.00 0.00 0.00 4.20
1086 2918 0.325203 AAGTCAGCCTCCTCTCCCTC 60.325 60.000 0.00 0.00 0.00 4.30
1087 2919 1.760480 GTCAGCCTCCTCTCCCTCC 60.760 68.421 0.00 0.00 0.00 4.30
1088 2920 2.445654 CAGCCTCCTCTCCCTCCC 60.446 72.222 0.00 0.00 0.00 4.30
1089 2921 3.773154 AGCCTCCTCTCCCTCCCC 61.773 72.222 0.00 0.00 0.00 4.81
1444 3276 2.490685 GCCCTTCGTCTCCTCGTC 59.509 66.667 0.00 0.00 0.00 4.20
1446 3278 1.995646 GCCCTTCGTCTCCTCGTCTC 61.996 65.000 0.00 0.00 0.00 3.36
1448 3280 1.134461 CCCTTCGTCTCCTCGTCTCTA 60.134 57.143 0.00 0.00 0.00 2.43
1450 3282 1.935199 CTTCGTCTCCTCGTCTCTACC 59.065 57.143 0.00 0.00 0.00 3.18
1462 3294 1.153745 CTCTACCGCTGTGCCAGTC 60.154 63.158 4.45 0.00 33.43 3.51
1474 3311 0.321919 TGCCAGTCCAGTTCATCTGC 60.322 55.000 0.00 0.00 42.38 4.26
1520 3357 2.030027 TTCTGTCTGTCCAGATGGGT 57.970 50.000 0.00 0.00 40.96 4.51
1523 3360 1.126948 TGTCTGTCCAGATGGGTGCA 61.127 55.000 0.00 0.00 39.97 4.57
1639 3476 2.819595 TCGCTGCTGCCGAATTCC 60.820 61.111 10.24 0.00 35.36 3.01
1644 3481 1.293924 CTGCTGCCGAATTCCTACTG 58.706 55.000 0.00 0.00 0.00 2.74
1654 3491 3.187227 CGAATTCCTACTGCCATGTATGC 59.813 47.826 0.00 0.00 0.00 3.14
1672 3509 3.781079 TGCTCTGTCAGGTTTTGTTTG 57.219 42.857 0.00 0.00 0.00 2.93
1673 3510 3.088532 TGCTCTGTCAGGTTTTGTTTGT 58.911 40.909 0.00 0.00 0.00 2.83
1699 3536 6.861065 ACAATTTGAGTATTTCAGTGTCGT 57.139 33.333 2.79 0.00 37.07 4.34
1702 3539 2.683968 TGAGTATTTCAGTGTCGTGGC 58.316 47.619 0.00 0.00 0.00 5.01
1712 3549 1.153842 TGTCGTGGCTGATGCGTAG 60.154 57.895 0.00 0.00 40.82 3.51
1810 3988 4.159135 CCTGCAAATTTCCAAGACATAGCT 59.841 41.667 0.00 0.00 0.00 3.32
1839 4017 6.471976 ACATATGTAGTGCGCAATGAATAG 57.528 37.500 22.31 12.90 0.00 1.73
1864 4042 1.635487 AGCAGAAAGGGCATACTCCAA 59.365 47.619 0.00 0.00 0.00 3.53
1865 4043 2.041620 AGCAGAAAGGGCATACTCCAAA 59.958 45.455 0.00 0.00 0.00 3.28
1866 4044 2.825532 GCAGAAAGGGCATACTCCAAAA 59.174 45.455 0.00 0.00 0.00 2.44
1868 4046 3.092301 AGAAAGGGCATACTCCAAAAGC 58.908 45.455 0.00 0.00 0.00 3.51
1869 4047 2.907458 AAGGGCATACTCCAAAAGCT 57.093 45.000 0.00 0.00 0.00 3.74
1870 4048 2.907458 AGGGCATACTCCAAAAGCTT 57.093 45.000 0.00 0.00 0.00 3.74
1871 4049 4.316025 AAGGGCATACTCCAAAAGCTTA 57.684 40.909 0.00 0.00 0.00 3.09
1873 4051 2.952310 GGGCATACTCCAAAAGCTTAGG 59.048 50.000 0.00 5.35 0.00 2.69
1874 4052 3.371595 GGGCATACTCCAAAAGCTTAGGA 60.372 47.826 17.00 17.00 0.00 2.94
1880 4077 7.255277 GCATACTCCAAAAGCTTAGGAATTAGG 60.255 40.741 18.15 14.73 0.00 2.69
1956 4153 4.037222 TCCCAGCAGTATCCATGAGTTTA 58.963 43.478 0.00 0.00 0.00 2.01
1985 4187 9.482627 TGAAGAAAATTACACAACAACAAAAGT 57.517 25.926 0.00 0.00 0.00 2.66
1996 4198 5.820947 ACAACAACAAAAGTCGTATCCTTCT 59.179 36.000 0.00 0.00 0.00 2.85
2050 4254 4.218312 GGCCTGACCAGAAATTATTGGAT 58.782 43.478 13.49 0.71 37.89 3.41
2086 4290 3.951663 ACTTACCCTACATTCTGCAACC 58.048 45.455 0.00 0.00 0.00 3.77
2095 4299 6.096705 CCCTACATTCTGCAACCATCAATTTA 59.903 38.462 0.00 0.00 0.00 1.40
2131 4335 7.818997 AAGAGTGCATATGATGTGATTGAAT 57.181 32.000 6.97 0.00 0.00 2.57
2192 4396 2.625790 CCTCCTACTGGTGCTAGCTTAG 59.374 54.545 17.23 13.23 34.23 2.18
2194 4398 3.954904 CTCCTACTGGTGCTAGCTTAGAA 59.045 47.826 17.23 0.00 34.23 2.10
2231 4435 9.577222 GGTTAGGGCCTAAACAATATTAATGTA 57.423 33.333 31.71 1.43 34.16 2.29
2253 4457 6.827251 TGTAGTATCTACAGTGGGAAGTACAG 59.173 42.308 5.64 0.00 0.00 2.74
2308 4512 0.543277 CCTCCTTGCATCAGTGGCTA 59.457 55.000 0.00 0.00 0.00 3.93
2369 4574 1.142870 TCTGCACCTAGTTTGGTTGCT 59.857 47.619 0.00 0.00 38.45 3.91
2383 4589 0.746659 GTTGCTCACAAAACCCAGCT 59.253 50.000 0.00 0.00 37.58 4.24
2399 4605 3.876914 CCCAGCTTGCATTATAGACGAAA 59.123 43.478 0.00 0.00 0.00 3.46
2408 4614 9.464714 CTTGCATTATAGACGAAACACTAGTAT 57.535 33.333 0.00 0.00 0.00 2.12
2447 4655 1.530419 TTTTGCCCAGATGCGGTGT 60.530 52.632 0.00 0.00 0.00 4.16
2451 4659 3.443045 CCCAGATGCGGTGTTGCC 61.443 66.667 0.00 0.00 0.00 4.52
2528 4736 0.179076 CCAGCACAGACACACACTCA 60.179 55.000 0.00 0.00 0.00 3.41
2562 4770 4.383649 CAGAGCAATTTGAACAACCATTCG 59.616 41.667 0.00 0.00 0.00 3.34
2595 5046 4.321750 AGGTACTACATTGACAACCAGTCG 60.322 45.833 0.00 0.00 44.82 4.18
2622 5073 4.139183 ACGACACTACGACAGTCTTAAC 57.861 45.455 0.00 0.00 34.26 2.01
2656 5107 8.135529 TCATAATATAAACCTCACAGACAGACG 58.864 37.037 0.00 0.00 0.00 4.18
2657 5108 3.594603 ATAAACCTCACAGACAGACGG 57.405 47.619 0.00 0.00 0.00 4.79
2658 5109 1.410004 AAACCTCACAGACAGACGGA 58.590 50.000 0.00 0.00 0.00 4.69
2659 5110 0.674534 AACCTCACAGACAGACGGAC 59.325 55.000 0.00 0.00 0.00 4.79
2660 5111 1.210413 CCTCACAGACAGACGGACG 59.790 63.158 0.00 0.00 0.00 4.79
2668 5119 4.456253 CAGACGGACGGACGGACG 62.456 72.222 6.00 8.35 38.39 4.79
2706 5157 0.449388 GATCAAGGCAAGTGCTTCGG 59.551 55.000 2.85 0.00 41.70 4.30
2707 5158 0.250901 ATCAAGGCAAGTGCTTCGGT 60.251 50.000 2.85 0.00 41.70 4.69
2738 5189 2.298729 GCACTTGGCCACCTTAAAATGA 59.701 45.455 3.88 0.00 36.11 2.57
2771 5225 6.316513 AGGGCCTAACAAAATTACTTTGGTA 58.683 36.000 2.82 0.00 43.38 3.25
2789 5243 2.223971 GGTATCCACAGTGGGATGTACG 60.224 54.545 20.14 0.00 46.98 3.67
2856 5310 5.763204 TGTTTGTTCATTACTCTCCCTTCAC 59.237 40.000 0.00 0.00 0.00 3.18
3075 5530 3.211045 TGGCTTTACTGCTCTTTTCGTT 58.789 40.909 0.00 0.00 0.00 3.85
3095 5550 9.667989 TTTCGTTAACTGTAATTTTTAGAAGGC 57.332 29.630 3.71 0.00 0.00 4.35
3096 5551 7.809665 TCGTTAACTGTAATTTTTAGAAGGCC 58.190 34.615 3.71 0.00 0.00 5.19
3097 5552 7.025365 CGTTAACTGTAATTTTTAGAAGGCCC 58.975 38.462 0.00 0.00 0.00 5.80
3098 5553 7.094506 CGTTAACTGTAATTTTTAGAAGGCCCT 60.095 37.037 0.00 0.00 0.00 5.19
3099 5554 8.582437 GTTAACTGTAATTTTTAGAAGGCCCTT 58.418 33.333 0.00 0.00 0.00 3.95
3100 5555 7.612065 AACTGTAATTTTTAGAAGGCCCTTT 57.388 32.000 0.00 0.00 0.00 3.11
3101 5556 7.612065 ACTGTAATTTTTAGAAGGCCCTTTT 57.388 32.000 0.00 0.00 0.00 2.27
3102 5557 8.029782 ACTGTAATTTTTAGAAGGCCCTTTTT 57.970 30.769 0.00 0.00 0.00 1.94
3242 5697 8.710551 ACATAGTCGTAAATAGTCTAGATGTCG 58.289 37.037 0.00 0.00 0.00 4.35
3246 5701 7.042590 AGTCGTAAATAGTCTAGATGTCGTCTG 60.043 40.741 4.73 0.00 37.83 3.51
3261 5716 4.763279 TGTCGTCTGTTTACTGTCCTCATA 59.237 41.667 0.00 0.00 0.00 2.15
3264 5719 5.886474 TCGTCTGTTTACTGTCCTCATATCT 59.114 40.000 0.00 0.00 0.00 1.98
3266 5721 6.693545 CGTCTGTTTACTGTCCTCATATCTTC 59.306 42.308 0.00 0.00 0.00 2.87
3339 5796 1.196766 AGTCAGCTGCAGTCCCATCA 61.197 55.000 16.64 0.00 0.00 3.07
3520 5977 8.738645 ATATTATCCTGAGTTTCTGGTGTTTC 57.261 34.615 2.53 0.00 36.89 2.78
3562 6019 6.964807 AGCATGATAAAAATAGTGCATGGA 57.035 33.333 0.00 0.00 35.06 3.41
3609 6082 2.093500 TGCCTGAGTTTCTCGCATATGT 60.093 45.455 4.29 0.00 32.35 2.29
3640 6113 9.396022 TGTTATTTTTGGACAAAAGGCATAAAA 57.604 25.926 9.80 5.24 40.83 1.52
3641 6114 9.877137 GTTATTTTTGGACAAAAGGCATAAAAG 57.123 29.630 9.80 0.00 40.83 2.27
3663 6136 1.214175 ACCAATCAACCTCCACACACA 59.786 47.619 0.00 0.00 0.00 3.72
3671 6144 0.392327 CCTCCACACACACACACACA 60.392 55.000 0.00 0.00 0.00 3.72
3672 6145 0.726827 CTCCACACACACACACACAC 59.273 55.000 0.00 0.00 0.00 3.82
3674 6147 0.167908 CCACACACACACACACACAC 59.832 55.000 0.00 0.00 0.00 3.82
3675 6148 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3676 6149 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3677 6150 1.155889 CACACACACACACACACACT 58.844 50.000 0.00 0.00 0.00 3.55
3678 6151 2.289133 ACACACACACACACACACACTA 60.289 45.455 0.00 0.00 0.00 2.74
3679 6152 2.739379 CACACACACACACACACACTAA 59.261 45.455 0.00 0.00 0.00 2.24
3680 6153 3.000041 ACACACACACACACACACTAAG 59.000 45.455 0.00 0.00 0.00 2.18
3681 6154 3.000041 CACACACACACACACACTAAGT 59.000 45.455 0.00 0.00 0.00 2.24
3682 6155 3.435327 CACACACACACACACACTAAGTT 59.565 43.478 0.00 0.00 0.00 2.66
3683 6156 3.682858 ACACACACACACACACTAAGTTC 59.317 43.478 0.00 0.00 0.00 3.01
3684 6157 3.682377 CACACACACACACACTAAGTTCA 59.318 43.478 0.00 0.00 0.00 3.18
3685 6158 3.682858 ACACACACACACACTAAGTTCAC 59.317 43.478 0.00 0.00 0.00 3.18
3686 6159 3.063452 CACACACACACACTAAGTTCACC 59.937 47.826 0.00 0.00 0.00 4.02
3687 6160 3.266636 CACACACACACTAAGTTCACCA 58.733 45.455 0.00 0.00 0.00 4.17
3688 6161 3.309682 CACACACACACTAAGTTCACCAG 59.690 47.826 0.00 0.00 0.00 4.00
3689 6162 3.055385 ACACACACACTAAGTTCACCAGT 60.055 43.478 0.00 0.00 0.00 4.00
3698 6171 7.011950 CACACTAAGTTCACCAGTTTAACATGA 59.988 37.037 0.00 0.00 0.00 3.07
3704 6177 6.879458 AGTTCACCAGTTTAACATGATAGGAC 59.121 38.462 0.00 0.00 0.00 3.85
3708 6181 7.174253 TCACCAGTTTAACATGATAGGACAAAC 59.826 37.037 0.00 0.00 0.00 2.93
3737 6210 1.025812 TTGGTACAGTTGGTTTGCCG 58.974 50.000 0.00 0.00 42.39 5.69
3743 6216 0.871163 CAGTTGGTTTGCCGCTTGTG 60.871 55.000 0.00 0.00 37.67 3.33
3748 6221 1.137872 TGGTTTGCCGCTTGTGATTTT 59.862 42.857 0.00 0.00 37.67 1.82
3765 6238 5.981915 GTGATTTTATACCTGGTAGGACGAC 59.018 44.000 12.78 3.80 37.67 4.34
3908 6394 1.396301 CGTCGCTCCGTAGTTAGAACT 59.604 52.381 0.00 0.00 42.91 3.01
3964 6450 4.816385 ACTACCTCATTGTTAATGATGCGG 59.184 41.667 4.85 5.92 46.10 5.69
4165 6677 4.912766 GCGCTGTACTCTCATCATAGTTAC 59.087 45.833 0.00 0.00 0.00 2.50
4167 6679 6.367421 CGCTGTACTCTCATCATAGTTACTC 58.633 44.000 0.00 0.00 0.00 2.59
4168 6680 6.566942 CGCTGTACTCTCATCATAGTTACTCC 60.567 46.154 0.00 0.00 0.00 3.85
4171 6683 6.999272 TGTACTCTCATCATAGTTACTCCCTC 59.001 42.308 0.00 0.00 0.00 4.30
4172 6684 5.390387 ACTCTCATCATAGTTACTCCCTCC 58.610 45.833 0.00 0.00 0.00 4.30
4173 6685 4.399219 TCTCATCATAGTTACTCCCTCCG 58.601 47.826 0.00 0.00 0.00 4.63
4174 6686 4.141228 TCTCATCATAGTTACTCCCTCCGT 60.141 45.833 0.00 0.00 0.00 4.69
4175 6687 4.543689 TCATCATAGTTACTCCCTCCGTT 58.456 43.478 0.00 0.00 0.00 4.44
4176 6688 4.583489 TCATCATAGTTACTCCCTCCGTTC 59.417 45.833 0.00 0.00 0.00 3.95
4177 6689 2.947652 TCATAGTTACTCCCTCCGTTCG 59.052 50.000 0.00 0.00 0.00 3.95
4178 6690 1.755179 TAGTTACTCCCTCCGTTCGG 58.245 55.000 4.74 4.74 0.00 4.30
4179 6691 0.038744 AGTTACTCCCTCCGTTCGGA 59.961 55.000 13.34 13.34 0.00 4.55
4180 6692 0.890683 GTTACTCCCTCCGTTCGGAA 59.109 55.000 14.79 0.04 33.41 4.30
4181 6693 1.479730 GTTACTCCCTCCGTTCGGAAT 59.520 52.381 14.79 2.09 33.41 3.01
4182 6694 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
4184 6696 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
4185 6697 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
4186 6698 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
4187 6699 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
4188 6700 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
4189 6701 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
4190 6702 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
4191 6703 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
4192 6704 1.266211 CGTTCGGAATTACTTGTCGCG 60.266 52.381 0.00 0.00 0.00 5.87
4193 6705 1.060122 GTTCGGAATTACTTGTCGCGG 59.940 52.381 6.13 0.00 0.00 6.46
4194 6706 0.527113 TCGGAATTACTTGTCGCGGA 59.473 50.000 6.13 0.00 0.00 5.54
4195 6707 1.067706 TCGGAATTACTTGTCGCGGAA 60.068 47.619 6.13 0.00 0.00 4.30
4196 6708 1.727880 CGGAATTACTTGTCGCGGAAA 59.272 47.619 6.13 0.00 0.00 3.13
4197 6709 2.350498 CGGAATTACTTGTCGCGGAAAT 59.650 45.455 6.13 0.00 0.00 2.17
4198 6710 3.680789 GGAATTACTTGTCGCGGAAATG 58.319 45.455 6.13 0.00 0.00 2.32
4199 6711 3.486875 GGAATTACTTGTCGCGGAAATGG 60.487 47.826 6.13 0.00 0.00 3.16
4200 6712 2.459060 TTACTTGTCGCGGAAATGGA 57.541 45.000 6.13 0.00 0.00 3.41
4201 6713 1.717194 TACTTGTCGCGGAAATGGAC 58.283 50.000 6.13 0.00 0.00 4.02
4202 6714 1.289109 ACTTGTCGCGGAAATGGACG 61.289 55.000 6.13 0.00 33.45 4.79
4206 6718 0.850856 GTCGCGGAAATGGACGTATC 59.149 55.000 6.13 0.00 0.00 2.24
4305 6817 8.746052 TTTCTCAAACAGAAACTGGAGATAAA 57.254 30.769 0.00 0.00 44.78 1.40
4322 6834 5.249420 AGATAAAAACAGAGGTCAGAAGGC 58.751 41.667 0.00 0.00 0.00 4.35
4328 6840 0.534412 AGAGGTCAGAAGGCGACATG 59.466 55.000 0.00 0.00 34.97 3.21
4495 7030 0.623723 GGCCCCACTGTTATCCAGAA 59.376 55.000 0.00 0.00 44.49 3.02
4496 7031 1.408822 GGCCCCACTGTTATCCAGAAG 60.409 57.143 0.00 0.00 44.49 2.85
4499 7034 1.212935 CCCACTGTTATCCAGAAGGGG 59.787 57.143 13.26 9.18 46.83 4.79
4505 7040 0.623723 TTATCCAGAAGGGGCACACC 59.376 55.000 0.00 0.00 37.22 4.16
4560 7103 2.812358 TCGTCAGAGCTAACAGCAAA 57.188 45.000 0.38 0.00 45.56 3.68
4561 7104 2.677199 TCGTCAGAGCTAACAGCAAAG 58.323 47.619 0.38 0.00 45.56 2.77
4562 7105 1.127582 CGTCAGAGCTAACAGCAAAGC 59.872 52.381 0.38 0.00 45.56 3.51
4563 7106 1.466558 GTCAGAGCTAACAGCAAAGCC 59.533 52.381 0.38 0.00 45.56 4.35
4564 7107 0.445436 CAGAGCTAACAGCAAAGCCG 59.555 55.000 0.38 0.00 45.56 5.52
4565 7108 0.674895 AGAGCTAACAGCAAAGCCGG 60.675 55.000 0.00 0.00 45.56 6.13
4587 7138 1.623811 AGCACCACAACCTCGTATTCT 59.376 47.619 0.00 0.00 0.00 2.40
4591 7142 4.421948 CACCACAACCTCGTATTCTAGAC 58.578 47.826 0.00 0.00 0.00 2.59
4594 7145 5.103000 CCACAACCTCGTATTCTAGACTTG 58.897 45.833 0.00 0.00 0.00 3.16
4603 7154 9.491675 CCTCGTATTCTAGACTTGTAGATAGAA 57.508 37.037 0.00 0.00 38.31 2.10
4618 7169 9.967346 TTGTAGATAGAAAGGATCAGATTAACG 57.033 33.333 0.00 0.00 0.00 3.18
4619 7170 8.577296 TGTAGATAGAAAGGATCAGATTAACGG 58.423 37.037 0.00 0.00 0.00 4.44
4636 7187 1.895707 GGGAAGATGATGCAGGCCG 60.896 63.158 0.00 0.00 0.00 6.13
4673 7224 0.234884 GTGCTGCCTGTCACGTTAAC 59.765 55.000 0.00 0.00 0.00 2.01
4705 7256 4.560856 CGAGGAGAAGGAGCGCCG 62.561 72.222 2.29 0.00 39.96 6.46
4809 7360 3.873828 CGTCTCGTACGTTCCTCTC 57.126 57.895 16.05 0.01 46.72 3.20
4811 7362 0.373024 GTCTCGTACGTTCCTCTCCG 59.627 60.000 16.05 0.00 0.00 4.63
4812 7363 0.036952 TCTCGTACGTTCCTCTCCGT 60.037 55.000 16.05 0.00 40.87 4.69
4813 7364 0.801251 CTCGTACGTTCCTCTCCGTT 59.199 55.000 16.05 0.00 38.43 4.44
4814 7365 0.798776 TCGTACGTTCCTCTCCGTTC 59.201 55.000 16.05 0.00 38.43 3.95
4815 7366 0.801251 CGTACGTTCCTCTCCGTTCT 59.199 55.000 7.22 0.00 38.43 3.01
4816 7367 1.198637 CGTACGTTCCTCTCCGTTCTT 59.801 52.381 7.22 0.00 38.43 2.52
4817 7368 2.593257 GTACGTTCCTCTCCGTTCTTG 58.407 52.381 0.00 0.00 38.43 3.02
4818 7369 1.325355 ACGTTCCTCTCCGTTCTTGA 58.675 50.000 0.00 0.00 32.50 3.02
4819 7370 1.000496 ACGTTCCTCTCCGTTCTTGAC 60.000 52.381 0.00 0.00 32.50 3.18
4820 7371 1.269998 CGTTCCTCTCCGTTCTTGACT 59.730 52.381 0.00 0.00 0.00 3.41
4821 7372 2.486982 CGTTCCTCTCCGTTCTTGACTA 59.513 50.000 0.00 0.00 0.00 2.59
4822 7373 3.426426 CGTTCCTCTCCGTTCTTGACTAG 60.426 52.174 0.00 0.00 0.00 2.57
4823 7374 3.715638 TCCTCTCCGTTCTTGACTAGA 57.284 47.619 0.00 0.00 0.00 2.43
4824 7375 4.237976 TCCTCTCCGTTCTTGACTAGAT 57.762 45.455 0.00 0.00 31.54 1.98
4825 7376 5.369409 TCCTCTCCGTTCTTGACTAGATA 57.631 43.478 0.00 0.00 31.54 1.98
4826 7377 5.942961 TCCTCTCCGTTCTTGACTAGATAT 58.057 41.667 0.00 0.00 31.54 1.63
4827 7378 7.075851 TCCTCTCCGTTCTTGACTAGATATA 57.924 40.000 0.00 0.00 31.54 0.86
4828 7379 7.691213 TCCTCTCCGTTCTTGACTAGATATAT 58.309 38.462 0.00 0.00 31.54 0.86
4829 7380 8.823794 TCCTCTCCGTTCTTGACTAGATATATA 58.176 37.037 0.00 0.00 31.54 0.86
4830 7381 9.104965 CCTCTCCGTTCTTGACTAGATATATAG 57.895 40.741 2.77 2.77 31.54 1.31
4831 7382 9.878667 CTCTCCGTTCTTGACTAGATATATAGA 57.121 37.037 11.31 0.00 31.54 1.98
4834 7385 8.894731 TCCGTTCTTGACTAGATATATAGATGC 58.105 37.037 11.31 1.50 31.54 3.91
4835 7386 8.132362 CCGTTCTTGACTAGATATATAGATGCC 58.868 40.741 11.31 0.00 31.54 4.40
4836 7387 7.853437 CGTTCTTGACTAGATATATAGATGCCG 59.147 40.741 11.31 1.16 31.54 5.69
4837 7388 7.809546 TCTTGACTAGATATATAGATGCCGG 57.190 40.000 11.31 0.00 0.00 6.13
4838 7389 7.347252 TCTTGACTAGATATATAGATGCCGGT 58.653 38.462 11.31 0.00 0.00 5.28
4839 7390 6.944234 TGACTAGATATATAGATGCCGGTG 57.056 41.667 11.31 0.00 0.00 4.94
4840 7391 6.659824 TGACTAGATATATAGATGCCGGTGA 58.340 40.000 11.31 0.00 0.00 4.02
4841 7392 6.768381 TGACTAGATATATAGATGCCGGTGAG 59.232 42.308 11.31 0.00 0.00 3.51
4842 7393 4.927978 AGATATATAGATGCCGGTGAGC 57.072 45.455 1.90 0.00 0.00 4.26
4843 7394 4.541705 AGATATATAGATGCCGGTGAGCT 58.458 43.478 1.90 0.19 0.00 4.09
4844 7395 4.959210 AGATATATAGATGCCGGTGAGCTT 59.041 41.667 1.90 0.00 0.00 3.74
4845 7396 2.820059 TATAGATGCCGGTGAGCTTG 57.180 50.000 1.90 0.00 0.00 4.01
4846 7397 1.123077 ATAGATGCCGGTGAGCTTGA 58.877 50.000 1.90 0.00 0.00 3.02
4847 7398 0.901827 TAGATGCCGGTGAGCTTGAA 59.098 50.000 1.90 0.00 0.00 2.69
4848 7399 0.674895 AGATGCCGGTGAGCTTGAAC 60.675 55.000 1.90 0.00 0.00 3.18
4849 7400 0.674895 GATGCCGGTGAGCTTGAACT 60.675 55.000 1.90 0.00 0.00 3.01
4850 7401 0.957395 ATGCCGGTGAGCTTGAACTG 60.957 55.000 1.90 0.00 0.00 3.16
4851 7402 1.301716 GCCGGTGAGCTTGAACTGA 60.302 57.895 1.90 0.00 0.00 3.41
4852 7403 0.884704 GCCGGTGAGCTTGAACTGAA 60.885 55.000 1.90 0.00 0.00 3.02
4853 7404 0.868406 CCGGTGAGCTTGAACTGAAC 59.132 55.000 0.00 0.00 0.00 3.18
4854 7405 1.541233 CCGGTGAGCTTGAACTGAACT 60.541 52.381 0.00 0.00 0.00 3.01
4855 7406 1.528586 CGGTGAGCTTGAACTGAACTG 59.471 52.381 0.00 0.00 0.00 3.16
4856 7407 1.876156 GGTGAGCTTGAACTGAACTGG 59.124 52.381 0.00 0.00 0.00 4.00
4857 7408 1.876156 GTGAGCTTGAACTGAACTGGG 59.124 52.381 0.00 0.00 0.00 4.45
4858 7409 0.877743 GAGCTTGAACTGAACTGGGC 59.122 55.000 0.00 0.00 0.00 5.36
4859 7410 0.183492 AGCTTGAACTGAACTGGGCA 59.817 50.000 0.00 0.00 0.00 5.36
4860 7411 1.202976 AGCTTGAACTGAACTGGGCAT 60.203 47.619 0.00 0.00 0.00 4.40
4861 7412 1.615392 GCTTGAACTGAACTGGGCATT 59.385 47.619 0.00 0.00 0.00 3.56
4862 7413 2.036346 GCTTGAACTGAACTGGGCATTT 59.964 45.455 0.00 0.00 0.00 2.32
4863 7414 3.645884 CTTGAACTGAACTGGGCATTTG 58.354 45.455 0.00 0.00 0.00 2.32
4864 7415 2.665165 TGAACTGAACTGGGCATTTGT 58.335 42.857 0.00 0.00 0.00 2.83
4865 7416 2.622942 TGAACTGAACTGGGCATTTGTC 59.377 45.455 0.00 0.00 0.00 3.18
4866 7417 1.238439 ACTGAACTGGGCATTTGTCG 58.762 50.000 0.00 0.00 0.00 4.35
4867 7418 1.238439 CTGAACTGGGCATTTGTCGT 58.762 50.000 0.00 0.00 0.00 4.34
4868 7419 0.950836 TGAACTGGGCATTTGTCGTG 59.049 50.000 0.00 0.00 0.00 4.35
4869 7420 0.951558 GAACTGGGCATTTGTCGTGT 59.048 50.000 0.00 0.00 0.00 4.49
4870 7421 0.951558 AACTGGGCATTTGTCGTGTC 59.048 50.000 0.00 0.00 0.00 3.67
4871 7422 0.179032 ACTGGGCATTTGTCGTGTCA 60.179 50.000 0.00 0.00 0.00 3.58
4872 7423 1.167851 CTGGGCATTTGTCGTGTCAT 58.832 50.000 0.00 0.00 0.00 3.06
4873 7424 0.880441 TGGGCATTTGTCGTGTCATG 59.120 50.000 0.00 0.00 0.00 3.07
4874 7425 0.881118 GGGCATTTGTCGTGTCATGT 59.119 50.000 0.00 0.00 0.00 3.21
4875 7426 1.401409 GGGCATTTGTCGTGTCATGTG 60.401 52.381 0.00 0.00 0.00 3.21
4876 7427 1.401409 GGCATTTGTCGTGTCATGTGG 60.401 52.381 0.00 0.00 0.00 4.17
4877 7428 1.266718 GCATTTGTCGTGTCATGTGGT 59.733 47.619 0.00 0.00 0.00 4.16
4878 7429 2.917714 GCATTTGTCGTGTCATGTGGTG 60.918 50.000 0.00 0.00 0.00 4.17
4879 7430 1.304254 TTTGTCGTGTCATGTGGTGG 58.696 50.000 0.00 0.00 0.00 4.61
4880 7431 1.163420 TTGTCGTGTCATGTGGTGGC 61.163 55.000 0.00 0.00 0.00 5.01
4881 7432 2.356913 TCGTGTCATGTGGTGGCG 60.357 61.111 0.00 0.00 34.28 5.69
4882 7433 4.088762 CGTGTCATGTGGTGGCGC 62.089 66.667 0.00 0.00 39.54 6.53
4883 7434 4.088762 GTGTCATGTGGTGGCGCG 62.089 66.667 0.00 0.00 34.28 6.86
4884 7435 4.306967 TGTCATGTGGTGGCGCGA 62.307 61.111 12.10 0.00 34.28 5.87
4885 7436 2.819595 GTCATGTGGTGGCGCGAT 60.820 61.111 12.10 0.00 0.00 4.58
4886 7437 2.819154 TCATGTGGTGGCGCGATG 60.819 61.111 12.10 2.18 0.00 3.84
4887 7438 3.879682 CATGTGGTGGCGCGATGG 61.880 66.667 12.10 0.00 0.00 3.51
4888 7439 4.408821 ATGTGGTGGCGCGATGGT 62.409 61.111 12.10 0.00 0.00 3.55
4899 7450 4.033776 CGATGGTGGGTGCAGGGT 62.034 66.667 0.00 0.00 0.00 4.34
4900 7451 2.361610 GATGGTGGGTGCAGGGTG 60.362 66.667 0.00 0.00 0.00 4.61
4901 7452 3.185203 ATGGTGGGTGCAGGGTGT 61.185 61.111 0.00 0.00 0.00 4.16
4902 7453 2.713531 GATGGTGGGTGCAGGGTGTT 62.714 60.000 0.00 0.00 0.00 3.32
4903 7454 2.597510 GGTGGGTGCAGGGTGTTC 60.598 66.667 0.00 0.00 0.00 3.18
4904 7455 2.597510 GTGGGTGCAGGGTGTTCC 60.598 66.667 0.00 0.00 0.00 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 7.346751 AGACACACATGGTCTTAATGTTTTT 57.653 32.000 0.00 0.00 42.77 1.94
98 99 5.175491 GTGGTTATTGCAAAAGACACACATG 59.825 40.000 17.36 0.00 0.00 3.21
102 103 5.590663 TGTAGTGGTTATTGCAAAAGACACA 59.409 36.000 21.59 11.20 0.00 3.72
110 111 9.553064 AATGAATTTTTGTAGTGGTTATTGCAA 57.447 25.926 0.00 0.00 0.00 4.08
189 192 5.004448 TGAAACAAATCACCGGTAAGCATA 58.996 37.500 6.87 0.00 0.00 3.14
363 445 6.730960 TTTCGTAAAAAGTTATGGCGAGAT 57.269 33.333 0.00 0.00 0.00 2.75
387 469 5.530915 CGCTATTGGATTATGACTCCCAAAA 59.469 40.000 0.00 0.00 41.40 2.44
392 475 3.931578 AGCGCTATTGGATTATGACTCC 58.068 45.455 8.99 0.00 0.00 3.85
437 520 7.644490 ACTTTACGATTTTCAAACACTATGCA 58.356 30.769 0.00 0.00 0.00 3.96
443 526 7.653523 TTCGAACTTTACGATTTTCAAACAC 57.346 32.000 0.00 0.00 39.45 3.32
465 548 3.386402 TGTCTGGTTTTGGATTGGGTTTC 59.614 43.478 0.00 0.00 0.00 2.78
518 602 6.592607 GGACTATAATGTGTTTCGTCCAAGAA 59.407 38.462 0.00 0.00 39.30 2.52
643 774 5.673514 TGATGTTCTGGATCGATTTCATCA 58.326 37.500 0.00 10.67 38.27 3.07
680 816 7.524912 AGAAATTGTGACTTCTTTCATCATCG 58.475 34.615 7.46 0.00 31.55 3.84
686 822 5.885352 TGGTGAGAAATTGTGACTTCTTTCA 59.115 36.000 7.46 0.00 32.01 2.69
826 2617 5.564651 CGGTTTTGTGGAAGATGCAAGTAAT 60.565 40.000 0.00 0.00 0.00 1.89
827 2618 4.261405 CGGTTTTGTGGAAGATGCAAGTAA 60.261 41.667 0.00 0.00 0.00 2.24
829 2620 2.034558 CGGTTTTGTGGAAGATGCAAGT 59.965 45.455 0.00 0.00 0.00 3.16
830 2621 2.293122 TCGGTTTTGTGGAAGATGCAAG 59.707 45.455 0.00 0.00 0.00 4.01
833 2624 2.922335 GCTTCGGTTTTGTGGAAGATGC 60.922 50.000 4.34 0.00 39.56 3.91
834 2625 2.351738 GGCTTCGGTTTTGTGGAAGATG 60.352 50.000 4.34 0.00 39.56 2.90
835 2626 1.886542 GGCTTCGGTTTTGTGGAAGAT 59.113 47.619 4.34 0.00 39.56 2.40
836 2627 1.314730 GGCTTCGGTTTTGTGGAAGA 58.685 50.000 4.34 0.00 39.56 2.87
838 2629 0.395862 TGGGCTTCGGTTTTGTGGAA 60.396 50.000 0.00 0.00 0.00 3.53
840 2631 0.678950 AATGGGCTTCGGTTTTGTGG 59.321 50.000 0.00 0.00 0.00 4.17
841 2632 2.524569 AAATGGGCTTCGGTTTTGTG 57.475 45.000 0.00 0.00 0.00 3.33
842 2633 2.959707 TGTAAATGGGCTTCGGTTTTGT 59.040 40.909 0.00 0.00 0.00 2.83
843 2634 3.651803 TGTAAATGGGCTTCGGTTTTG 57.348 42.857 0.00 0.00 0.00 2.44
844 2635 4.086457 AGATGTAAATGGGCTTCGGTTTT 58.914 39.130 0.00 0.00 0.00 2.43
889 2692 5.989249 TGTGTGTTTCGAAATTCAGATGAG 58.011 37.500 14.69 0.00 0.00 2.90
937 2747 2.122954 GGAGTGGAGGGACCTGGT 59.877 66.667 0.00 0.00 39.86 4.00
1079 2911 3.680920 GAGAAGGCGGGGAGGGAGA 62.681 68.421 0.00 0.00 0.00 3.71
1081 2913 4.798682 GGAGAAGGCGGGGAGGGA 62.799 72.222 0.00 0.00 0.00 4.20
1088 2920 3.462199 GAATCGGGGGAGAAGGCGG 62.462 68.421 0.00 0.00 0.00 6.13
1089 2921 2.109181 GAATCGGGGGAGAAGGCG 59.891 66.667 0.00 0.00 0.00 5.52
1090 2922 2.109181 CGAATCGGGGGAGAAGGC 59.891 66.667 0.00 0.00 0.00 4.35
1462 3294 0.742281 CCGGACTGCAGATGAACTGG 60.742 60.000 23.35 15.21 45.82 4.00
1474 3311 2.554032 AGAAAATTCAGCAACCGGACTG 59.446 45.455 9.46 13.13 35.15 3.51
1520 3357 2.599875 TTGGCGGCCTTCATTGCA 60.600 55.556 21.46 0.00 0.00 4.08
1523 3360 1.535204 CCTTGTTGGCGGCCTTCATT 61.535 55.000 21.46 0.00 0.00 2.57
1639 3476 3.181472 TGACAGAGCATACATGGCAGTAG 60.181 47.826 0.00 0.00 0.00 2.57
1644 3481 1.134280 ACCTGACAGAGCATACATGGC 60.134 52.381 3.32 0.00 0.00 4.40
1654 3491 5.584649 TGTAGACAAACAAAACCTGACAGAG 59.415 40.000 3.32 0.00 0.00 3.35
1672 3509 8.162880 CGACACTGAAATACTCAAATTGTAGAC 58.837 37.037 0.00 0.00 32.17 2.59
1673 3510 7.870954 ACGACACTGAAATACTCAAATTGTAGA 59.129 33.333 0.00 0.00 32.17 2.59
1699 3536 1.408969 TACATCCTACGCATCAGCCA 58.591 50.000 0.00 0.00 37.52 4.75
1702 3539 2.093973 GGGGATACATCCTACGCATCAG 60.094 54.545 8.14 0.00 46.35 2.90
1712 3549 6.441088 AACTAAATCAGAGGGGATACATCC 57.559 41.667 0.00 0.00 46.41 3.51
1810 3988 6.481644 TCATTGCGCACTACATATGTTATTGA 59.518 34.615 11.12 0.00 0.00 2.57
1839 4017 4.096532 GGAGTATGCCCTTTCTGCTTAAAC 59.903 45.833 0.00 0.00 0.00 2.01
1880 4077 9.474313 AGGATGGACTCTAGAATTAGTATGATC 57.526 37.037 0.00 0.00 0.00 2.92
1891 4088 5.163405 CCAATCGAAAGGATGGACTCTAGAA 60.163 44.000 0.40 0.00 38.85 2.10
1902 4099 4.392940 CCAGATTAGCCAATCGAAAGGAT 58.607 43.478 10.40 6.60 44.51 3.24
1956 4153 8.994429 TTGTTGTTGTGTAATTTTCTTCATGT 57.006 26.923 0.00 0.00 0.00 3.21
1975 4172 7.329588 AAAAGAAGGATACGACTTTTGTTGT 57.670 32.000 12.12 0.00 46.41 3.32
2032 4236 3.882888 GCCGATCCAATAATTTCTGGTCA 59.117 43.478 5.63 0.00 34.11 4.02
2070 4274 3.003394 TGATGGTTGCAGAATGTAGGG 57.997 47.619 0.00 0.00 39.31 3.53
2192 4396 5.140454 AGGCCCTAACCAAATATGTCATTC 58.860 41.667 0.00 0.00 0.00 2.67
2194 4398 4.814224 AGGCCCTAACCAAATATGTCAT 57.186 40.909 0.00 0.00 0.00 3.06
2231 4435 4.645588 GCTGTACTTCCCACTGTAGATACT 59.354 45.833 0.00 0.00 0.00 2.12
2247 4451 3.307059 CCAAAGAGGCACTTAGCTGTACT 60.307 47.826 0.00 0.00 41.55 2.73
2253 4457 2.747989 GGTAACCAAAGAGGCACTTAGC 59.252 50.000 0.00 0.00 41.55 3.09
2308 4512 0.617249 AGCTCAGCCAGGCTCTACTT 60.617 55.000 12.53 0.00 36.40 2.24
2369 4574 1.412079 ATGCAAGCTGGGTTTTGTGA 58.588 45.000 0.00 0.00 0.00 3.58
2383 4589 9.244799 CATACTAGTGTTTCGTCTATAATGCAA 57.755 33.333 5.39 0.00 0.00 4.08
2399 4605 3.071479 CAACCAAACGGCATACTAGTGT 58.929 45.455 5.39 0.00 0.00 3.55
2408 4614 3.910490 GCCTGCAACCAAACGGCA 61.910 61.111 6.04 0.00 40.41 5.69
2447 4655 2.879163 TTGCACGTAACCAAACGGCAA 61.879 47.619 15.92 15.92 46.62 4.52
2511 4719 2.627515 ATTGAGTGTGTGTCTGTGCT 57.372 45.000 0.00 0.00 0.00 4.40
2528 4736 5.012239 TCAAATTGCTCTGTTCTGCCTATT 58.988 37.500 0.00 0.00 0.00 1.73
2562 4770 7.262772 TGTCAATGTAGTACCTAATGTAGTGC 58.737 38.462 0.00 0.00 36.38 4.40
2595 5046 5.862811 AGACTGTCGTAGTGTCGTTATTAC 58.137 41.667 1.52 0.00 40.53 1.89
2607 5058 6.315642 TGACTATCTGGTTAAGACTGTCGTAG 59.684 42.308 1.52 0.00 40.55 3.51
2608 5059 6.175471 TGACTATCTGGTTAAGACTGTCGTA 58.825 40.000 1.52 0.26 40.55 3.43
2609 5060 5.008331 TGACTATCTGGTTAAGACTGTCGT 58.992 41.667 1.52 1.36 40.55 4.34
2610 5061 5.562506 TGACTATCTGGTTAAGACTGTCG 57.437 43.478 1.52 0.00 40.55 4.35
2656 5107 4.112341 CTGTCCGTCCGTCCGTCC 62.112 72.222 0.00 0.00 0.00 4.79
2657 5108 3.052082 TCTGTCCGTCCGTCCGTC 61.052 66.667 0.00 0.00 0.00 4.79
2658 5109 2.454832 TAGTCTGTCCGTCCGTCCGT 62.455 60.000 0.00 0.00 0.00 4.69
2659 5110 1.300971 TTAGTCTGTCCGTCCGTCCG 61.301 60.000 0.00 0.00 0.00 4.79
2660 5111 0.883833 TTTAGTCTGTCCGTCCGTCC 59.116 55.000 0.00 0.00 0.00 4.79
2668 5119 1.829222 TCCGGGATGTTTAGTCTGTCC 59.171 52.381 0.00 0.00 0.00 4.02
2738 5189 3.818295 TTGTTAGGCCCTAACCAATGT 57.182 42.857 26.80 0.00 43.82 2.71
2771 5225 1.480954 GTCGTACATCCCACTGTGGAT 59.519 52.381 27.94 15.69 46.22 3.41
2789 5243 5.940470 AGGTGGTTCATCAAGTCATTAAGTC 59.060 40.000 0.00 0.00 0.00 3.01
3075 5530 8.715190 AAAGGGCCTTCTAAAAATTACAGTTA 57.285 30.769 21.20 0.00 0.00 2.24
3089 5544 5.518865 TGCATATTCTAAAAAGGGCCTTCT 58.481 37.500 21.20 12.55 0.00 2.85
3090 5545 5.852282 TGCATATTCTAAAAAGGGCCTTC 57.148 39.130 21.20 2.58 0.00 3.46
3091 5546 6.213397 ACTTTGCATATTCTAAAAAGGGCCTT 59.787 34.615 14.48 14.48 33.20 4.35
3092 5547 5.721480 ACTTTGCATATTCTAAAAAGGGCCT 59.279 36.000 0.00 0.00 33.20 5.19
3093 5548 5.977635 ACTTTGCATATTCTAAAAAGGGCC 58.022 37.500 0.00 0.00 33.20 5.80
3094 5549 8.996024 TTAACTTTGCATATTCTAAAAAGGGC 57.004 30.769 0.00 0.00 33.20 5.19
3129 5584 5.921962 TGACATCGGGATATATTCTCCAG 57.078 43.478 6.41 3.07 34.24 3.86
3158 5613 6.715280 ACATGGCAGAGAAAGAAATCTAGAA 58.285 36.000 0.00 0.00 0.00 2.10
3242 5697 7.777095 AGAAGATATGAGGACAGTAAACAGAC 58.223 38.462 0.00 0.00 0.00 3.51
3246 5701 9.220767 ACAAAAGAAGATATGAGGACAGTAAAC 57.779 33.333 0.00 0.00 0.00 2.01
3261 5716 8.579006 TCTGCAATGTTCAATACAAAAGAAGAT 58.421 29.630 0.00 0.00 40.89 2.40
3264 5719 8.196771 AGTTCTGCAATGTTCAATACAAAAGAA 58.803 29.630 0.00 0.00 40.89 2.52
3266 5721 7.095940 CCAGTTCTGCAATGTTCAATACAAAAG 60.096 37.037 0.00 0.00 40.89 2.27
3339 5796 3.051940 TCCTCATCTGGCTGAAGGTAT 57.948 47.619 10.73 0.00 0.00 2.73
3520 5977 2.760650 GCTAATTCACCCCCAAGGAAAG 59.239 50.000 0.00 0.00 39.89 2.62
3562 6019 3.569701 AGTGCGTGTTTGGATTTCAGAAT 59.430 39.130 0.00 0.00 0.00 2.40
3609 6082 7.607991 TGCCTTTTGTCCAAAAATAACAGAAAA 59.392 29.630 6.65 0.00 39.49 2.29
3640 6113 2.708861 TGTGTGGAGGTTGATTGGTACT 59.291 45.455 0.00 0.00 0.00 2.73
3641 6114 2.812011 GTGTGTGGAGGTTGATTGGTAC 59.188 50.000 0.00 0.00 0.00 3.34
3663 6136 3.682858 GTGAACTTAGTGTGTGTGTGTGT 59.317 43.478 0.00 0.00 0.00 3.72
3671 6144 6.174760 TGTTAAACTGGTGAACTTAGTGTGT 58.825 36.000 0.00 0.00 0.00 3.72
3672 6145 6.671614 TGTTAAACTGGTGAACTTAGTGTG 57.328 37.500 0.00 0.00 0.00 3.82
3674 6147 7.490962 TCATGTTAAACTGGTGAACTTAGTG 57.509 36.000 0.00 0.00 0.00 2.74
3675 6148 9.436957 CTATCATGTTAAACTGGTGAACTTAGT 57.563 33.333 0.00 0.00 0.00 2.24
3676 6149 8.883731 CCTATCATGTTAAACTGGTGAACTTAG 58.116 37.037 0.00 0.00 0.00 2.18
3677 6150 8.598916 TCCTATCATGTTAAACTGGTGAACTTA 58.401 33.333 0.00 0.00 0.00 2.24
3678 6151 7.390718 GTCCTATCATGTTAAACTGGTGAACTT 59.609 37.037 0.00 0.00 0.00 2.66
3679 6152 6.879458 GTCCTATCATGTTAAACTGGTGAACT 59.121 38.462 0.00 0.00 0.00 3.01
3680 6153 6.653320 TGTCCTATCATGTTAAACTGGTGAAC 59.347 38.462 0.00 0.00 0.00 3.18
3681 6154 6.774673 TGTCCTATCATGTTAAACTGGTGAA 58.225 36.000 0.00 0.00 0.00 3.18
3682 6155 6.367374 TGTCCTATCATGTTAAACTGGTGA 57.633 37.500 0.00 0.00 0.00 4.02
3683 6156 7.174946 AGTTTGTCCTATCATGTTAAACTGGTG 59.825 37.037 0.00 0.00 36.06 4.17
3684 6157 7.231467 AGTTTGTCCTATCATGTTAAACTGGT 58.769 34.615 0.00 0.00 36.06 4.00
3685 6158 7.687941 AGTTTGTCCTATCATGTTAAACTGG 57.312 36.000 0.00 0.00 36.06 4.00
3686 6159 7.538678 GCAAGTTTGTCCTATCATGTTAAACTG 59.461 37.037 0.00 0.00 37.09 3.16
3687 6160 7.230510 TGCAAGTTTGTCCTATCATGTTAAACT 59.769 33.333 0.00 0.00 38.20 2.66
3688 6161 7.367285 TGCAAGTTTGTCCTATCATGTTAAAC 58.633 34.615 0.00 0.00 0.00 2.01
3689 6162 7.517614 TGCAAGTTTGTCCTATCATGTTAAA 57.482 32.000 0.00 0.00 0.00 1.52
3698 6171 5.481473 ACCAAATCATGCAAGTTTGTCCTAT 59.519 36.000 15.92 0.71 32.41 2.57
3704 6177 5.531634 ACTGTACCAAATCATGCAAGTTTG 58.468 37.500 12.31 12.31 33.72 2.93
3708 6181 4.022068 ACCAACTGTACCAAATCATGCAAG 60.022 41.667 0.00 0.00 0.00 4.01
3737 6210 6.260271 GTCCTACCAGGTATAAAATCACAAGC 59.740 42.308 0.00 0.00 36.53 4.01
3743 6216 5.218139 CGTCGTCCTACCAGGTATAAAATC 58.782 45.833 0.00 0.00 36.53 2.17
3748 6221 1.141657 AGCGTCGTCCTACCAGGTATA 59.858 52.381 0.00 0.00 36.53 1.47
3964 6450 3.695816 GTGCAAACACAAAGACTTCTCC 58.304 45.455 0.00 0.00 46.61 3.71
4033 6519 4.437239 ACTAGCTACATTGCACAGCTTAG 58.563 43.478 14.38 12.00 42.95 2.18
4145 6657 7.001674 AGGGAGTAACTATGATGAGAGTACAG 58.998 42.308 0.00 0.00 0.00 2.74
4165 6677 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
4167 6679 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
4168 6680 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
4171 6683 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44
4172 6684 1.266211 CGCGACAAGTAATTCCGAACG 60.266 52.381 0.00 0.00 0.00 3.95
4173 6685 1.060122 CCGCGACAAGTAATTCCGAAC 59.940 52.381 8.23 0.00 0.00 3.95
4174 6686 1.067706 TCCGCGACAAGTAATTCCGAA 60.068 47.619 8.23 0.00 0.00 4.30
4175 6687 0.527113 TCCGCGACAAGTAATTCCGA 59.473 50.000 8.23 0.00 0.00 4.55
4176 6688 1.352114 TTCCGCGACAAGTAATTCCG 58.648 50.000 8.23 0.00 0.00 4.30
4177 6689 3.486875 CCATTTCCGCGACAAGTAATTCC 60.487 47.826 8.23 0.00 0.00 3.01
4178 6690 3.372822 TCCATTTCCGCGACAAGTAATTC 59.627 43.478 8.23 0.00 0.00 2.17
4179 6691 3.126343 GTCCATTTCCGCGACAAGTAATT 59.874 43.478 8.23 0.00 0.00 1.40
4180 6692 2.676342 GTCCATTTCCGCGACAAGTAAT 59.324 45.455 8.23 0.00 0.00 1.89
4181 6693 2.070783 GTCCATTTCCGCGACAAGTAA 58.929 47.619 8.23 0.00 0.00 2.24
4182 6694 1.717194 GTCCATTTCCGCGACAAGTA 58.283 50.000 8.23 0.00 0.00 2.24
4184 6696 1.289109 ACGTCCATTTCCGCGACAAG 61.289 55.000 8.23 0.00 0.00 3.16
4185 6697 0.038435 TACGTCCATTTCCGCGACAA 60.038 50.000 8.23 0.00 0.00 3.18
4186 6698 0.173935 ATACGTCCATTTCCGCGACA 59.826 50.000 8.23 0.00 0.00 4.35
4187 6699 0.850856 GATACGTCCATTTCCGCGAC 59.149 55.000 8.23 0.00 0.00 5.19
4188 6700 0.742505 AGATACGTCCATTTCCGCGA 59.257 50.000 8.23 0.00 0.00 5.87
4189 6701 2.410785 TAGATACGTCCATTTCCGCG 57.589 50.000 0.00 0.00 0.00 6.46
4190 6702 3.909430 TGATAGATACGTCCATTTCCGC 58.091 45.455 0.00 0.00 0.00 5.54
4191 6703 5.709966 TGATGATAGATACGTCCATTTCCG 58.290 41.667 0.00 0.00 0.00 4.30
4192 6704 7.819415 TGAATGATGATAGATACGTCCATTTCC 59.181 37.037 0.00 0.00 0.00 3.13
4193 6705 8.651588 GTGAATGATGATAGATACGTCCATTTC 58.348 37.037 0.00 0.00 0.00 2.17
4194 6706 7.604164 GGTGAATGATGATAGATACGTCCATTT 59.396 37.037 0.00 0.00 0.00 2.32
4195 6707 7.099764 GGTGAATGATGATAGATACGTCCATT 58.900 38.462 0.00 0.00 0.00 3.16
4196 6708 6.211384 TGGTGAATGATGATAGATACGTCCAT 59.789 38.462 0.00 0.00 0.00 3.41
4197 6709 5.538433 TGGTGAATGATGATAGATACGTCCA 59.462 40.000 0.00 0.00 0.00 4.02
4198 6710 6.025749 TGGTGAATGATGATAGATACGTCC 57.974 41.667 0.00 0.00 0.00 4.79
4199 6711 6.682746 ACTGGTGAATGATGATAGATACGTC 58.317 40.000 0.00 0.00 0.00 4.34
4200 6712 6.656632 ACTGGTGAATGATGATAGATACGT 57.343 37.500 0.00 0.00 0.00 3.57
4201 6713 7.094162 ACCTACTGGTGAATGATGATAGATACG 60.094 40.741 0.00 0.00 46.51 3.06
4202 6714 8.128322 ACCTACTGGTGAATGATGATAGATAC 57.872 38.462 0.00 0.00 46.51 2.24
4304 6816 1.416401 TCGCCTTCTGACCTCTGTTTT 59.584 47.619 0.00 0.00 0.00 2.43
4305 6817 1.048601 TCGCCTTCTGACCTCTGTTT 58.951 50.000 0.00 0.00 0.00 2.83
4322 6834 6.455646 GCACAGGATAAGTAAAAGACATGTCG 60.456 42.308 19.85 3.39 34.09 4.35
4328 6840 6.743575 ATGTGCACAGGATAAGTAAAAGAC 57.256 37.500 25.84 0.00 0.00 3.01
4499 7034 0.179056 ATATACTGCCACGGGTGTGC 60.179 55.000 0.00 2.22 45.04 4.57
4505 7040 2.688507 CCTGCTTATATACTGCCACGG 58.311 52.381 4.93 0.00 0.00 4.94
4507 7042 2.808543 GTGCCTGCTTATATACTGCCAC 59.191 50.000 4.93 3.22 0.00 5.01
4555 7098 2.985847 GGTGCTTCCGGCTTTGCT 60.986 61.111 0.00 0.00 42.39 3.91
4556 7099 3.294493 TGGTGCTTCCGGCTTTGC 61.294 61.111 0.00 0.00 42.39 3.68
4560 7103 2.594592 GTTGTGGTGCTTCCGGCT 60.595 61.111 0.00 0.00 42.39 5.52
4561 7104 3.670377 GGTTGTGGTGCTTCCGGC 61.670 66.667 0.00 0.00 39.52 6.13
4562 7105 1.966451 GAGGTTGTGGTGCTTCCGG 60.966 63.158 0.00 0.00 39.52 5.14
4563 7106 2.317609 CGAGGTTGTGGTGCTTCCG 61.318 63.158 0.00 0.00 39.52 4.30
4564 7107 0.034337 TACGAGGTTGTGGTGCTTCC 59.966 55.000 0.00 0.00 0.00 3.46
4565 7108 2.094762 ATACGAGGTTGTGGTGCTTC 57.905 50.000 0.00 0.00 0.00 3.86
4594 7145 8.030106 CCCGTTAATCTGATCCTTTCTATCTAC 58.970 40.741 0.00 0.00 0.00 2.59
4603 7154 5.366768 TCATCTTCCCGTTAATCTGATCCTT 59.633 40.000 0.00 0.00 0.00 3.36
4618 7169 1.895707 CGGCCTGCATCATCTTCCC 60.896 63.158 0.00 0.00 0.00 3.97
4619 7170 2.550101 GCGGCCTGCATCATCTTCC 61.550 63.158 13.61 0.00 45.45 3.46
4805 7356 9.878667 TCTATATATCTAGTCAAGAACGGAGAG 57.121 37.037 0.00 0.00 37.89 3.20
4808 7359 8.894731 GCATCTATATATCTAGTCAAGAACGGA 58.105 37.037 0.00 0.00 37.89 4.69
4809 7360 8.132362 GGCATCTATATATCTAGTCAAGAACGG 58.868 40.741 0.00 0.00 37.89 4.44
4811 7362 8.132362 CCGGCATCTATATATCTAGTCAAGAAC 58.868 40.741 0.00 0.00 37.89 3.01
4812 7363 7.834681 ACCGGCATCTATATATCTAGTCAAGAA 59.165 37.037 0.00 0.00 37.89 2.52
4813 7364 7.283354 CACCGGCATCTATATATCTAGTCAAGA 59.717 40.741 0.00 0.00 39.02 3.02
4814 7365 7.283354 TCACCGGCATCTATATATCTAGTCAAG 59.717 40.741 0.00 0.00 0.00 3.02
4815 7366 7.116736 TCACCGGCATCTATATATCTAGTCAA 58.883 38.462 0.00 0.00 0.00 3.18
4816 7367 6.659824 TCACCGGCATCTATATATCTAGTCA 58.340 40.000 0.00 0.00 0.00 3.41
4817 7368 6.293735 GCTCACCGGCATCTATATATCTAGTC 60.294 46.154 0.00 0.00 0.00 2.59
4818 7369 5.533154 GCTCACCGGCATCTATATATCTAGT 59.467 44.000 0.00 0.00 0.00 2.57
4819 7370 5.767665 AGCTCACCGGCATCTATATATCTAG 59.232 44.000 0.00 0.00 34.17 2.43
4820 7371 5.696030 AGCTCACCGGCATCTATATATCTA 58.304 41.667 0.00 0.00 34.17 1.98
4821 7372 4.541705 AGCTCACCGGCATCTATATATCT 58.458 43.478 0.00 0.00 34.17 1.98
4822 7373 4.927978 AGCTCACCGGCATCTATATATC 57.072 45.455 0.00 0.00 34.17 1.63
4823 7374 4.711846 TCAAGCTCACCGGCATCTATATAT 59.288 41.667 0.00 0.00 34.17 0.86
4824 7375 4.086457 TCAAGCTCACCGGCATCTATATA 58.914 43.478 0.00 0.00 34.17 0.86
4825 7376 2.899900 TCAAGCTCACCGGCATCTATAT 59.100 45.455 0.00 0.00 34.17 0.86
4826 7377 2.316108 TCAAGCTCACCGGCATCTATA 58.684 47.619 0.00 0.00 34.17 1.31
4827 7378 1.123077 TCAAGCTCACCGGCATCTAT 58.877 50.000 0.00 0.00 34.17 1.98
4828 7379 0.901827 TTCAAGCTCACCGGCATCTA 59.098 50.000 0.00 0.00 34.17 1.98
4829 7380 0.674895 GTTCAAGCTCACCGGCATCT 60.675 55.000 0.00 0.00 34.17 2.90
4830 7381 0.674895 AGTTCAAGCTCACCGGCATC 60.675 55.000 0.00 0.00 34.17 3.91
4831 7382 0.957395 CAGTTCAAGCTCACCGGCAT 60.957 55.000 0.00 0.00 34.17 4.40
4832 7383 1.597854 CAGTTCAAGCTCACCGGCA 60.598 57.895 0.00 0.00 34.17 5.69
4833 7384 0.884704 TTCAGTTCAAGCTCACCGGC 60.885 55.000 0.00 0.00 0.00 6.13
4834 7385 0.868406 GTTCAGTTCAAGCTCACCGG 59.132 55.000 0.00 0.00 0.00 5.28
4835 7386 1.528586 CAGTTCAGTTCAAGCTCACCG 59.471 52.381 0.00 0.00 0.00 4.94
4836 7387 1.876156 CCAGTTCAGTTCAAGCTCACC 59.124 52.381 0.00 0.00 0.00 4.02
4837 7388 1.876156 CCCAGTTCAGTTCAAGCTCAC 59.124 52.381 0.00 0.00 0.00 3.51
4838 7389 1.815408 GCCCAGTTCAGTTCAAGCTCA 60.815 52.381 0.00 0.00 0.00 4.26
4839 7390 0.877743 GCCCAGTTCAGTTCAAGCTC 59.122 55.000 0.00 0.00 0.00 4.09
4840 7391 0.183492 TGCCCAGTTCAGTTCAAGCT 59.817 50.000 0.00 0.00 0.00 3.74
4841 7392 1.251251 ATGCCCAGTTCAGTTCAAGC 58.749 50.000 0.00 0.00 0.00 4.01
4842 7393 3.068590 ACAAATGCCCAGTTCAGTTCAAG 59.931 43.478 0.00 0.00 0.00 3.02
4843 7394 3.030291 ACAAATGCCCAGTTCAGTTCAA 58.970 40.909 0.00 0.00 0.00 2.69
4844 7395 2.622942 GACAAATGCCCAGTTCAGTTCA 59.377 45.455 0.00 0.00 0.00 3.18
4845 7396 2.350772 CGACAAATGCCCAGTTCAGTTC 60.351 50.000 0.00 0.00 0.00 3.01
4846 7397 1.608590 CGACAAATGCCCAGTTCAGTT 59.391 47.619 0.00 0.00 0.00 3.16
4847 7398 1.238439 CGACAAATGCCCAGTTCAGT 58.762 50.000 0.00 0.00 0.00 3.41
4848 7399 1.069022 CACGACAAATGCCCAGTTCAG 60.069 52.381 0.00 0.00 0.00 3.02
4849 7400 0.950836 CACGACAAATGCCCAGTTCA 59.049 50.000 0.00 0.00 0.00 3.18
4850 7401 0.951558 ACACGACAAATGCCCAGTTC 59.048 50.000 0.00 0.00 0.00 3.01
4851 7402 0.951558 GACACGACAAATGCCCAGTT 59.048 50.000 0.00 0.00 0.00 3.16
4852 7403 0.179032 TGACACGACAAATGCCCAGT 60.179 50.000 0.00 0.00 0.00 4.00
4853 7404 1.135603 CATGACACGACAAATGCCCAG 60.136 52.381 0.00 0.00 0.00 4.45
4854 7405 0.880441 CATGACACGACAAATGCCCA 59.120 50.000 0.00 0.00 0.00 5.36
4855 7406 0.881118 ACATGACACGACAAATGCCC 59.119 50.000 0.00 0.00 0.00 5.36
4856 7407 1.401409 CCACATGACACGACAAATGCC 60.401 52.381 0.00 0.00 0.00 4.40
4857 7408 1.266718 ACCACATGACACGACAAATGC 59.733 47.619 0.00 0.00 0.00 3.56
4858 7409 2.350676 CCACCACATGACACGACAAATG 60.351 50.000 0.00 0.00 0.00 2.32
4859 7410 1.879380 CCACCACATGACACGACAAAT 59.121 47.619 0.00 0.00 0.00 2.32
4860 7411 1.304254 CCACCACATGACACGACAAA 58.696 50.000 0.00 0.00 0.00 2.83
4861 7412 1.163420 GCCACCACATGACACGACAA 61.163 55.000 0.00 0.00 0.00 3.18
4862 7413 1.596752 GCCACCACATGACACGACA 60.597 57.895 0.00 0.00 0.00 4.35
4863 7414 2.667318 CGCCACCACATGACACGAC 61.667 63.158 0.00 0.00 0.00 4.34
4864 7415 2.356913 CGCCACCACATGACACGA 60.357 61.111 0.00 0.00 0.00 4.35
4865 7416 4.088762 GCGCCACCACATGACACG 62.089 66.667 0.00 0.00 0.00 4.49
4866 7417 4.088762 CGCGCCACCACATGACAC 62.089 66.667 0.00 0.00 0.00 3.67
4867 7418 3.604129 ATCGCGCCACCACATGACA 62.604 57.895 0.00 0.00 0.00 3.58
4868 7419 2.819595 ATCGCGCCACCACATGAC 60.820 61.111 0.00 0.00 0.00 3.06
4869 7420 2.819154 CATCGCGCCACCACATGA 60.819 61.111 0.00 0.00 0.00 3.07
4870 7421 3.879682 CCATCGCGCCACCACATG 61.880 66.667 0.00 0.00 0.00 3.21
4871 7422 4.408821 ACCATCGCGCCACCACAT 62.409 61.111 0.00 0.00 0.00 3.21
4882 7433 4.033776 ACCCTGCACCCACCATCG 62.034 66.667 0.00 0.00 0.00 3.84
4883 7434 2.361610 CACCCTGCACCCACCATC 60.362 66.667 0.00 0.00 0.00 3.51
4884 7435 2.713531 GAACACCCTGCACCCACCAT 62.714 60.000 0.00 0.00 0.00 3.55
4885 7436 3.425014 AACACCCTGCACCCACCA 61.425 61.111 0.00 0.00 0.00 4.17
4886 7437 2.597510 GAACACCCTGCACCCACC 60.598 66.667 0.00 0.00 0.00 4.61
4887 7438 2.597510 GGAACACCCTGCACCCAC 60.598 66.667 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.