>input_sequence_26351
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------------------------------ATGAAGAAGATCTTCGGCGCCAAGAAGAGCAAGGACCCACCGCCCACCAT
CCAGGACGCCACCAACCAAGTCAGCCTC-CTCTCCCTCCCCGCCTTCTCCCCCGATTCGTTTCCCCTTCCCACGCCCGAA
ATCCAATCCAATGCCGCTCCGATTTGACCGGTGGCGCAGATAAACAAGCGGGGCGAGAGCGTGGACGAGAAGATCAAGAA
GCTGGACGAGGAGCTGGCGCGGTACAAGGAGCAGATCCGCAAGGCCCGCCCCGGCCCCTCGCAGGAGGCCATCAAGGCCC
GCGCCATCAGGCTCCTCAAGCACAAGCGCATGTACGAGGAGCAGCGCAACATGCTCTACAACCAGACCTACAACCTCGAC
CAGGTCGGCTTCGCCGCCGACGGCCTCAAGGACGCGCAGCAGACCGTACGCCCCGCCCGCCCTTCGTCTCCTCGTCTCTA
CCGCTGTGCCAGTCC-----AGTTCATCTGCAGTCCGGTTGCTGAATTTTCTTGATTTTCTGTCTGTCCAGATGGGTGCA
ATGAAGGCCGCCAACAAGGAGCTCAAGGGGATGATGAAGACCGTCAAGATCGAGGACATCGATGTACGTTTTGCTCCTCC
CCGTTCTTAGTTTTGCTGTCGCTGCTGCCGAATTCCTACTGCCATGTATGCTCTGTCAGGTTTTGTTTGTCTACAATTTG
AGTATTTCAGTGTCGTGGCTGATGCGTAGGATGTATCCCCTCTGAT----------------------------------
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-------------------------------------------------------------------TTAGTTTCAAATA
GCAGTAACTAAATTAGAGGGGATACATATATCAGTAACCATTCACCTGCAAATTTCCAAGACATAGCTCAATAACATATG
TAGTGCGCAATGAATAGTTTAAGCAGAAAGGGCATACTCCAAAAGCTTAGGAA-------------------TTAGGATC
ATACTAATTCTAGAGTCCATCCTTTCGATTGGCTAATCTGGGATCACATTTCCCAGCAGTATCCATGAGTTTACATGAAG
AAAATTACACAA-----CAACAAAAGTCGTATCCTTCTTTTTTACATCTTC--TGTTCATGTGCAACATCTGGCCTGACC
AGAAATTATTGGATCGGCAATCAGCCTTACTTACCCTACATTCTGCAACCATCAATTTATTTTCATAACAAAGAGTGCAT
ATGATGTGATTGAATAGCCATGGTCATTTTGGCAACCATCCGAATAAGGACCAACCTCCTACTGGTGCTAGCTTAGAATG
ACATATTTGGTTAGGGCCTAAACAATATTAATGTAGTATCTACAGTGGGAAGTACAGCTAAGTGCCTCTTTGGTTACCTG
CATCATTTTTGGCCTCCTTGCATCAGTGGCTAAGTAGAGCCTGGCTGAGCTAATGCAGGCTGAAA-ACCATGTTCTGCAC
CTAGTTTGGTTGCTCACAAAACCC-AGCTTGCATTATAGACGAAACACTAGTATGCCGTTTGGTTGCAGGCATGTTTTGC
CCAGATGC--GGTGTTGCCGTTTGGTTACGTGCAAGACATGCGGTGTGGTAACCTTTTGTTCCAGTGGTGAGGTTACCAG
CACAGACACACACTCAATAGGCAGAACAGAGCAATTTGAACAACCATTCGCACTACATTAGGTACTAC------------
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---------------------------------------------------------------------ATTGACAACCA
--GTCGTAATAACGACACTACGACAGTCTTAACCAGATAGTCATAATATAAACCTCACAGACAGACGGACGGACGGACGG
ACAGACTAAACATCCCGGATCAAGGCAAGTGCTTCGGTGTGCTTCTTGCACTTGGCCACCTTAAAATGACA---TTGGTT
AGGGCCTAACAAAATTACTTTGGTATCCACAGTGGGATGTACGACTTAATGACTTGATGAACCACCTTAAATGTTTCTCT
TTCAATGTTTGTTCATTACTCTCCCTTCACTTGATGGTAACACAAGTTCCTTTGTGAACTGTCATTTGTAGAATATGCAA
GATGAAATGACGGATCTGATGGACGTGAGCAACGAGATACAAGAATCTCTTGGTAGAAGCTACAACATCCCCGATGATGT
TGACGAGGAAGATCTAATGGGAGGTATGGAGGCTGTATTTTCAGCTGGAGAAGACTGTAACTTGATCTGGC-TTTACTGC
TCTTTTCGTTAACTGTAATTTTTAGAAGGCCCTTTTTAGAATATGCAAAGTTAATATTTTCAGCTGGAGAATATATCCCG
ATGTCATAAATATTCTAGATTTCTTTCTCTGCCATGTTGGTCCCAGGCATGTACTCTTCTGGGGGGAATTACATAGTCGT
AAATAGTCTAGATGTCGTCTGTTTACTGTCCTCATATCTTC--TTTTGTATTGAACATTGCAGAACTGGATGCTCTGGAA
GCTGATATGGAGTTTGAGTCAGCTGCAGTCCCATCATACCTTCAGCCAGATGAGGAATCTGATCTTAACTTGCCCGCTGC
ACCGACTTATCCTGCAGCAGTTCCCGTAAGCAGGCACCAGGTAAGTGGATTCCATGTGCATTTAGATTGCACAACAGAAT
GCAATTCACACAGCATATTTAACTTGGCATAATATTATCCTGAGTTTCTGGTGTTTCTTTCCTTGGGGGTGAATTAGCAT
GATAAAAATAGTGCATGGATTCTGAAATCCAAACAC----------------GCACTTTATGCCTGAGTTTCTCGCATAT
GTTTTCTGTTATTTTTGGACAAAAGGCATAAAAGTACCAATCAACCTCCACACACACACACACACACACTAAGTTCACCA
GTTTAACATGATAGGACAAACTTGCATGATTTGGTACAGTTGGTTTGCCGCTTGTGATTTTATACCTGGTAGGACGACGC
TGCATGATTTGCTACAGTTGACCGATGACTAAGCAACC------------ATGAGCCATTATTGAATAATGGGTCGTTT-
ATTTCGTTATGTGGTGCAGGAGGACGAGCTTGGACTGCCACCGGTACCTCGAGCGTCGCTCCGTAGTTAG----------
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>chr3D_1_TraesCS3D01G081400
TCGTAATTTTAGATTTTGAAAAGATGTCAAAAAAATCATGTATATGTAAGAAATACTAAAAAAAACAATAACCGTCAAAA
ATATAAAAACATTAAGACCATGTGTGTCTTTTGCAATAACCACTAC--AAAAATTCATTTACCTACCCTGGCTTTTTATG
TTGATGATGATGACAAATGATCATATTAGTTTATGCTTA-CCGGTGATTTGTTTCATAAAAAACCACCTGATTTCTT---
------------------------TTACATTTAGAGTAATTTAAAGCCTTCAAAGGTTCAGAAATATTTATTAAATAAAA
GTATGACAA----------------------------------------------TTTGTCTTTTG----C-AAAAAAGG
AGAAACTAACAATTTTTTGGAAGGGACTGAAATAATATATTTATATCTCGCCATAACTTTTTACGAAATT-TTGGGAGTC
ATAATCCAATAGCGCTATCTACATATAAGTTTTTTTTTCTGCATAGTGTTTGAAAATCGTAAAGTTCGAAACCCAATCCA
AAACCAGACATGGATTCAATTTAAGA-GGTTTTAAGAAAAAT--------------------------------------
-------TCTTGGACGAAACACATTATAGTCCGTGGTTCAAAAAAA-CC-TTTTCCATAAGATAAATGATTTCTAATATT
GAAATCTAAGAGAGAATAATCAAATTTTCTATTACTATTATAACAAATAGACTTGATGAAATCGATCCAGAACATCATAA
AAGAATCG-----ATCGATGATGAAAGAAGTCACAATTTCTCACCA----------------------------------
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-------------------------------------------TAATTAACCTCTAATTTTTTTTCTTGAAAATTAAAAT
AA------------------------------------------------------------------------------
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--------------------------------------------------------AAAT--ATGCTATTAATTTCACCA
TTCTTTTTAGGCTGGCAGGCCCGC--GAGTTGCCAACTTTCTTAACTTGTAGGCCCATTACTTGCATCTTCCACA-----
-------AAACCGAAGCCCATTTACATCTCAATATCAGTTTCAGAAAAAGGCTCATCT---GAATTTCGAAACACACAAA
GAGAGACGCACTCACTCTGCT----CACCAGGTCCCTCCACTCCAGCCGAGAAAC---------------------CGCC
GCCGCCGCCGCCCGCCCGCCGGAGCCGGAGATGAAGAAGATCTTCGGCGCCAAGAAGAGCAAGGACCCACCGCCCACCAT
CCAGGACGCCACCAACCAAGTCAGCCTC-CTCTCCCTCCCCGCCTTCTCCCCCGATTCGTTTCCCCTTCCCACGCCCGAA
ATCCAATCCAATGCCGCTCCGATTTGACCGGTGGCGCAGATAAACAAGCGGGGCGAGAGCGTGGACGAGAAGATCAAGAA
GCTGGACGAGGAGCTGGCGCGGTACAAGGAGCAGATCCGCAAGGCCCGCCCCGGCCCCTCGCAGGAGGCCATCAAGGCCC
GCGCCATCAGGCTCCTCAAGCACAAGCGCATGTACGAGGAGCAGCGCAACATGCTCTACAACCAGACCTACAACCTCGAC
CAGGTCGGCTTCGCCGCCGACGGCCTCAAGGACGCGCAGCAGACCGTACGCCCCGCCCGCCCTTCGTCTCCTCGTCTCTA
CCGCTGTGCCAGTCC-----AGTTCATCTGCAGTCCGGTTGCTGAATTTTCTTGATTTTCTGTCTGTCCAGATGGGTGCA
ATGAAGGCCGCCAACAAGGAGCTCAAGGGGATGATGAAGACCGTCAAGATCGAGGACATCGATGTACGTTTTGCTCCTCC
CCGTTCTTAGTTTTGCTGTCGCTGCTGCCGAATTCCTACTGCCATGTATGCTCTGTCAGGTTTTGTTTGTCTACAATTTG
AGTATTTCAGTGTCGTGGCTGATGCGTAGGATGTATCCCCTCTGAT----------------------------------
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-------------------------------------------------------------------TTAGTTTCAAATA
GCAGTAACTAAATTAGAGGGGATACATATATCAGTAACCATTCACCTGCAAATTTCCAAGACATAGCTCAATAACATATG
TAGTGCGCAATGAATAGTTTAAGCAGAAAGGGCATACTCCAAAAGCTTAGGAA-------------------TTAGGATC
ATACTAATTCTAGAGTCCATCCTTTCGATTGGCTAATCTGGGATCACATTTCCCAGCAGTATCCATGAGTTTACATGAAG
AAAATTACACAA-----CAACAAAAGTCGTATCCTTCTTTTTTACATCTTC--TGTTCATGTGCAACATCTGGCCTGACC
AGAAATTATTGGATCGGCAATCAGCCTTACTTACCCTACATTCTGCAACCATCAATTTATTTTCATAACAAAGAGTGCAT
ATGATGTGATTGAATAGCCATGGTCATTTTGGCAACCATCCGAATAAGGACCAACCTCCTACTGGTGCTAGCTTAGAATG
ACATATTTGGTTAGGGCCTAAACAATATTAATGTAGTATCTACAGTGGGAAGTACAGCTAAGTGCCTCTTTGGTTACCTG
CATCATTTTTGGCCTCCTTGCATCAGTGGCTAAGTAGAGCCTGGCTGAGCTAATGCAGGCTGAAA-ACCATGTTCTGCAC
CTAGTTTGGTTGCTCACAAAACCC-AGCTTGCATTATAGACGAAACACTAGTATGCCGTTTGGTTGCAGGCATGTTTTGC
CCAGATGC--GGTGTTGCCGTTTGGTTACGTGCAAGACATGCGGTGTGGTAACCTTTTGTTCCAGTGGTGAGGTTACCAG
CACAGACACACACTCAATAGGCAGAACAGAGCAATTTGAACAACCATTCGCACTACATTAGGTACTAC------------
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---------------------------------------------------------------------ATTGACAACCA
--GTCGTAATAACGACACTACGACAGTCTTAACCAGATAGTCATAATATAAACCTCACAGACAGACGGACGGACGGACGG
ACAGACTAAACATCCCGGATCAAGGCAAGTGCTTCGGTGTGCTTCTTGCACTTGGCCACCTTAAAATGACA---TTGGTT
AGGGCCTAACAAAATTACTTTGGTATCCACAGTGGGATGTACGACTTAATGACTTGATGAACCACCTTAAATGTTTCTCT
TTCAATGTTTGTTCATTACTCTCCCTTCACTTGATGGTAACACAAGTTCCTTTGTGAACTGTCATTTGTAGAATATGCAA
GATGAAATGACGGATCTGATGGACGTGAGCAACGAGATACAAGAATCTCTTGGTAGAAGCTACAACATCCCCGATGATGT
TGACGAGGAAGATCTAATGGGAGGTATGGAGGCTGTATTTTCAGCTGGAGAAGACTGTAACTTGATCTGGC-TTTACTGC
TCTTTTCGTTAACTGTAATTTTTAGAAGGCCCTTTTTAGAATATGCAAAGTTAATATTTTCAGCTGGAGAATATATCCCG
ATGTCATAAATATTCTAGATTTCTTTCTCTGCCATGTTGGTCCCAGGCATGTACTCTTCTGGGGGGAATTACATAGTCGT
AAATAGTCTAGATGTCGTCTGTTTACTGTCCTCATATCTTC--TTTTGTATTGAACATTGCAGAACTGGATGCTCTGGAA
GCTGATATGGAGTTTGAGTCAGCTGCAGTCCCATCATACCTTCAGCCAGATGAGGAATCTGATCTTAACTTGCCCGCTGC
ACCGACTTATCCTGCAGCAGTTCCCGTAAGCAGGCACCAGGTAAGTGGATTCCATGTGCATTTAGATTGCACAACAGAAT
GCAATTCACACAGCATATTTAACTTGGCATAATATTATCCTGAGTTTCTGGTGTTTCTTTCCTTGGGGGTGAATTAGCAT
GATAAAAATAGTGCATGGATTCTGAAATCCAAACAC----------------GCACTTTATGCCTGAGTTTCTCGCATAT
GTTTTCTGTTATTTTTGGACAAAAGGCATAAAAGTACCAATCAACCTCCACACACACACACACACACACTAAGTTCACCA
GTTTAACATGATAGGACAAACTTGCATGATTTGGTACAGTTGGTTTGCCGCTTGTGATTTTATACCTGGTAGGACGACGC
TGCATGATTTGCTACAGTTGACCGATGACTAAGCAACC------------ATGAGCCATTATTGAATAATGGGTCGTTT-
ATTTCGTTATGTGGTGCAGGAGGACGAGCTTGGACTGCCACCGGTACCTCGAGCGTCGCTCCGTAGTTAGAACTTGGAAG
TATTTCCCGACCTTGTTCTCAGTGTTACTACCTCATTGTTAATGATGCGGGAGAAGTCTTTGTGTTTGCACTTAAACAAT
CCTTGTAAGCCATTTCTTGATGGTACTGCCTCTTATGGCTAAGCTGTGCAATGTAGCTAGTTTCCGGCTCTGCTTTGCTC
TATCCTGGCTGTATGGG--------------------------CTCCGTGCATATCGTTCATTATTTTCTGGTGGTCGTT
CCTGTTCGGGGCAGCGCTGTACTCTCATCATAGTTACTCCCTCCGTTCGGAATTACTTGTCGCGGAAATGGACGTATCTA
TCATCATTCACCAGTAGGTTTCTTATTGGTTGCAATAGGGAGAACATAAGTTGCTGAAAAACAATGGTAGATTTCTCAAA
CAGAAACTGGAGATAAAAACAGAGGTCAGAAGGCGACATGTCTTTTACTTATCCTGTGCACATTTTGCCC----ATTTGT
AACAAATAATGGAGGCAAGATAAGTATGAAGCCTG-GGGTGGCAGAAATATCTTTGGAGTGGTAC--AAAATTTGGT---
-------------CTCATTGAGGTGGACAGCCAATAGGAGGAGAGCACATGGCCCCACTGTTATCCAGAAGGGGCACACC
CG--------TGGCAGTATATAAGCAGGCACTGCTTAGCCTGATCGTCAGAGCTAACAGCAAAGCCGGA--------AGC
ACCACAACCTCGTATTCTAGACTTGTAGATAGAAAGGATCAGATTAACGGGAAGATGATGCAGGCCGCCGTTGCTTTGTC
GGCCGTGCTGCCTGTCACGTTAACGGGCAGGCCGGCGGCGAGGAGAAGGAGCGCCGCCGTGGCCGCCGGCGGCAGAAGGC
TTGTGGGTGCCGGCGTCCGTGCATCGGCTGCGGCGGCGCCGGAGGCGGACTACAGCTCCAGCGTCTCGTACGTTCCTCTC
CGTTCTTGACTAGATATATAGATGCCGGTGAGCTTGAACTGAACTGGGCATTTGTCGTGTCATGTGGTGGCGCGATGGTG
GGTGCAGGGTGTTCC
>chr3B_3
GTAATTTAGATATTTAAAGATGTC-----AAAAATTCATGTATATGTAAGAAATACTACAAAACCATAACCAATAAAATT
C-ATCAAAACATTAAGACAATGCGTGTCTTCTGCAATAACAAGTGCAAAAAAAATCATTTACGTACCCCGGCTTTT-ATG
TTGATGATGATGACAAATGATCATATTAATTGATGCTTTTTTGGTGATTTGTTTCAAAGAACAATAAAAATGAAAAAAAA
ACACCACCCCAAAAAACTTTTACATTATATTTAGAGTAATTTAAAGGCCTCAAAGTTTCAGATTTTATTTTTTTTGAAAA
ACATGAATGTTGGGAACTCGATGGATTAGATACCAATATAAATTCATAATTTTTTTTTGTCTTTTTCCCCC-AAAAAAAG
AGAAACTAACAATTGTTTTGTGAGGGAAAAAATAATTAATTTATTTCTCGCCATAAGTTTTTACAAAA-T-TTGCGAGTC
ATAATCTAATAGCACTATCTACATAAAAGATTTATTTCAGATACTTCCTTGAATCCGCG--AAGTTCAAAAGCCAATCCA
AAACCGGAAGTGGGTTCAATTTAAGCGGGTTTTAAGAAAAGAAAATCTTTAATATATAACATGAGCAATTTCACAGTTTA
AAATTGATCTTGGACCAAACGCACCATAGTCCATGGTTCAAAACAAACC-TTTTTCATAAGATGAATGATTTCTAATTTT
GAAATCTATGAGAGAAT------ATTTTTT-TTACTATTATAACTAATAGACTCGATGGAATCGATACAGAGCAGCATAT
AATAATTAGTCCAATGGATGACAAAAGAAGTCACAGTTGCTCACCTATTCTCCTTTTCTCTTTGAAATTAGGATGATAAG
AGCATTTCTAGTAGTACCCCTAAACCCTTAAATCTGTAAAAATAACTGCTTTTTTACAGTTTGGACAGAAAAAAGTGCGT
AGACTAGACCCCTTTAACCCTTAGACCCTCAAATTTTTTTTAGAGGCCCAACCCGGAAACACATCTTCAACCTGTAGAAG
CGAGGGTTTGGGAGGAAAACAGGGGTCGACCTGCAATCCTAGCAACGACGCGCGGGAGGGAAGTTTCATCCTCCCCAACC
TCCGCGCCGCCGCCGCCGTCGCGCGGATCCGGCCGCCCGCCGCCGTCCCCGCCGTCCCGCCGGCGCCTCACACCTCGGCC
GCGTCCATCCCCGGCCCCGGACGGCCGCGCCTCCTCCTCTCCGCGCGGATCGCCGCCCCTGCCCGCCCTCCGCCGCCGGA
GGTGATGCGCCGCGCCGTCCCTCCGTCACCGTCGCGGCCCGCAGCGAGCAGGGTGAGGCGAGCGGCCGCGCGCGCGGCTC
AACGTGAGGAGGGCGAGGACGTCGGCCACGGTAGCAGGCACTCAGCAAGCCGGTCTCGGCAGAGAAGAAATCATAGGCCA
CGCCTCGGTATTTGCCACTCTTTGCACCGCGCGGCACATGCGCACGAGCTGTTTGATGCTTTGCGTCAACGAGTTCGAGC
AGGCCTTGTTCTTGGTTCATCCACATGTTTATCAAAAGCAATATGTTTCTTGTGTCAGGAGGTTTCCGAGAAATGATCGA
GGTATACATTCACTAATCAGTTGCACTAACGGTACTTTTGGAGTATCAGAACATGGTCAAATTTGTCCGTCCTTATAAAA
TTGTCAAACTTTGATAATTGCTATATTTGTATGTCACACCAAGCTTTACTTTTAGCATATCTATAGTTTGAAGACAGACA
TTGGTGCTAAAATTTTCATCTATATTATCTGTTGGACCATTAAACAAGGACATGTTTCTTCTTTAGATCTAAAAACATTG
TAATTTGATTCGAACAATTATTGTAATTTGCTCAAACATTGTTGTAATAATTTGAATGATTATTGTTTTATTCGGTGGTG
TAATAATAACTAGAATGATTATTGTTTTATGTTAAATGCGATGGAATTTGTGATATGTCATATGATGGAATGTGATGAAA
TGTGTGATATGTGAAATGACAGTTTTAAAGGTTGGGGTTGAGGCAAAGACTAGAACCCTCAAATCCAACCCTTAAAGTAG
TTTAAGGGTTGGGTTTGAGGTTTCTAGTATTTGCCCGTGTTTTTCAATCCTTAAAAGTATCAAAAAGTGGCACTTCTCAA
CCCTTAAAACTGCTTTAAGGATTTGAGGGTTTGAGGGTTCTACTAGTAATGCTCTAAGTTTTTTTTTTGATCATCAGTAC
AGACACAAGCGCTCATATACACGCGCGTACACTCACCCCTATGAACGCACACACGCACACCCTACCCCTATGAGCACCTC
CGAGAGACTGAGCCGGCATATCATCTTGAGATTTACGAAGTCACCGTAGGCGCCTCGTCGTCGACGGGAACGTCTACTCC
CACTGAAAGCGCATCGCCGAAAATCCTGAAATAAATTCAGGAATAATGCGAGCACCAGGATTTGAACCCTGATGGGTTGG
GGATACCACTGTCCACCTAACCAACTCAATCACAGATTGATTCGCAGTAATGCTCTAAGT--ATGCTATTGTTTCCATC-
------TTAGGCCGACAGGCCCGCTTGAGTTGCCAACTTTCTTAACTTGCAGGCCCGCTGGTTAGCCCATTACGCACAAT
CTTCCATAAACCGAAGCCCATGTACATCTCAATATCAGTTTCAGAAAAAAGGCTCACCTCCGAATTTCGAAACACACAAA
GAGAGACGCACTCACTCTGCTCCCACCCCAGGTCCCTCCACTCCAGCCGAGAAAC---------------------CGCC
GCCGCCCA----------CCGGAGCCGGAGATGAAGAAGATCTTCGGCGCGAAGAAGAGCAGGGACCCGCCGCCCACCAT
CCAGGACGCCACCAACCAAGTCAGCCTCTCCCCTC-------CCTTCTCCCCCGATTCGTTTCCCCTTCTCACGCCCGAA
ATCCAATCCAATGCCGCTCCGATTTGACCGGTGGCGCAGATAAACAAGCGGGGCGAGAGCGTGGACGAGAAGATCAAGAA
GCTGGACGAGGAGCTGACGCGGTACAAGGAGCAGATCCGCAAGGCCCGGCCGGGCCCCTCGCAGGAGGCCATCAAGGCCC
GCGCCATCAGGCTCCTCAAGCACAAGCGCATGTACGAGGAGCAGCGCAACATGCTCTACAACCAGACCTACAACCTCGAC
CAGGTGGGCTTCGCCGCCGACGGCCTCAAGGACGCGCAGCAGACCGTACGCCCCGCCCGCCCTCCGTCTCCTCCTGTGTG
CTGCTGTGCCGGTTC-----ATTTCATCTCTAGTGCGGTTG------------------CTGTCTGTCCAGATGGGCGCG
ATGAAGGCCGCCAACAAGGAGCTCAAGGGGATGATGAAGACCGTCAAGATCGAGGACATCGATGTACGTTTTGCTCCGCC
CCGTTTCTTGTTTTGCTGTCGCTGCTGCCGGATTCGTGCTACCTTGTATGGCCTGTGAGGTTTTGTTTCGCTACAATTTC
AGTGTCGTGGGTGATGCCGTGATGCGTATGATGTATCATCTAAGTTAGAGCATCTCCAATAGCATGTGTATATTTGGATG
TCTATATATTCATATAGACAATTGTCTAAAAAAAATTCCCTCATATACACGTCCAGTTTTAGATCAGAACGTCTATATAT
ACAGGGACCATGACAGGTGGGCCCTCGCTGGGGAGAGGAAGAAATCATGACTGCAGCTGAGTTTGGACGACGCCTTCACA
TTGTCCAGGCGTGGACATTGTCGAGGTTGATTTAGAGGATGTGTATATTTGGACAACCATATAGACAAGCTGTTGTACGC
CTGTTTTGGGCTCACGTCGTGGAAAACGAGTATAGACATCCATATAGACAAGCTATTGGAGATGCTCTTAGTTTCAAACA
GCAGTAACTAAATTAGAGGGGATGCGTATGTCAGTAACCATTCACCTGCAAATTTCCAAGACATAGCC---TAATATATG
TATGGCACAATGAATACTTTAAGCAGAAAGGGCATACTCCACTCGTACTGTCAAATATGGCGTATCAGAAGCTTAGTATC
ATACTAACTCTAGAATCCGTCCTTTCGATTGGCTAATCTGGGATCACATTTCCCAGCAGTATCCATGAGTTTTCATGAAG
AGAATTACACACACACAAAAAAAAAACTGTATCCTTC-TTTTTACATCTTATATGTTCATGTGCAATATCTGGCCAGACC
AGAAATTATTGTACCGGCAATCAGCCTTGTTTATCCTACATTCTGTAACTATCAATTTCTTTTCATAGCAAAGAGTGCAT
ATGATGTGATTGAAGAGCCATGGCCATTTTGGCAACCATCCGAATAAGGACCGACCTCCTACTGGTGCTACCTTACAGTG
ACATTTTTGGTTAGGGCCTAAACAATATTAATGTGGTATCCACAGTGGGATGTACAACTAAGTGTCTGTCTGGTTACCTG
CATCATTTTTGGCCTCCTTGCATCAGTGGCTGAGTAGAGCCCGACTGAGCTAATTCAGGCTGAAA-ACCATGTTCTGCAC
CTAGTTTGGTTGCCCACAAAACCTCAGCCTGCATTGTAGACGAACCACTAGTACGCTGTTTGGTTGCAGACATGTTTTGC
CCAGATGCAAGGTGCTGCTGTTTGGTTATGTGCAGGACA------GTGGTAACCTTTTGTTCCAGTGGTGAGGTTACCTG
CACAGACACACACTC-ATAGGCCGAACAGAGCAATTTGAACAACCGTTCACACTACAGTAGGTACTACTCCCTCCGTTCC
GATTTACTCGTTGTGGTTTTAGTTCTTGAACTAAAACCATGATGAGTACTCCCTCCGTTCCTAAATACAAGTCTTTGTAG
AGATTCCACTAGGTGGACTACATACGGAGCAAAATGAATGAATCTAAACTTAAAATGCATCTATATACATCCATATGCGG
TTTATAGTGGAATCTCTACAAAGACTTAAATTTAGGAACGGAGGGAGTAAATCGGAACGGAGGGAGTACATTGATAACCA
TAGTCATAATAACGAC--------AGTCTTAAGCAGATAGTCATAATATAAACCTCACAGACAGACA----GACGGACAG
ACAGACTAAACATCCCGGATCAAGGCAAGTGCTTCGTCGTGCTTCTTGCACTTGGCCACGTTAAAATGGCATAGTTGGTT
AGGGCCTAACAAAATTACTTTGGTTTCCACAGTGGGA-GTACAACTTAATGACTTGATGAACCACCTTAAATGTTTCTCT
TTCAATGTTTGTTCATTACTCTCCCTTCATTTGATGGTAACACAAGTTCCTTCGTGAACTGTCATCTATAGAATATGCAA
GATGAAATGACGGATCTGATGGACGTGAGCAACGAGATACAAGAATCTCTTGGTAGGAGCTACAACATCCCGGACGATGT
TGACGAGGAAGATCTAATGGGAGGTATGGAGGCTGTATTTTCAGTTGGAGAAGACTGTAACATTATCTGGGTTTTACTGC
TCTTTTCGCAAACTGTAATCTTT--------------AGAATATGC-AAGTTAATATTTTCAGTTGGAGAATATATCCCG
ATGTCATAAATAGTCTAGATTTCTTTCTCTGCCATGTTGGTCCCAGGCATGTACTCTTATGGGGGGAATTACATAGTCGT
AAATAGTCTAGATGTCCTCTATTTACTGTCCTCATTTCCTTTTTTTTGTATCGAACATTGCAGAACTGGATGCTCTGGAA
GCTGATATGGAGTTTGAGTCAGCTGCAGTCCCGTCGTACCTTCAGCCAGATGAGGAATCTGATCTTAACTTGCCCGCTGC
ACCGACTTATCCTGCAGCAGTTCCCGTAAGCAGGCACCAGGTAAGTGGATTCCATGTGCATTTAGATTGCACAACAGAAT
GCAATCCACACAGCATATTTAACTTGTCATAATATTATCCTGATCTTCTGGTGTTTATTTCCTTGGGGGTGAATTAACAT
GATAAAAATAGTGCATGGGTTCTGAAATCCGAACAATGTTCAGTATCTGGTAGCACTTTATGCCTGAGTTTCTCGCGTAT
GCCTTCAGTTATTTTTGGACAAAAGGCATAAATTTACCAATGAACCTCCACACACGCAAACACTAAG-------------
--TTAACATGCTAGGAAAAAGTTGCATGATTTGGTACAGTTGGTTTGCCCCTTGTTATTTGATACCTGGTAGGACGATGC
TGCATGATTTGCTACAGCTGACCGATGACTAAGCAACCATGTTGTTTTGAATGAGCCATTATTGAATAATGGATCGCTTA
ATTTCGTTATGTTGTGCAGGAGGACGAGCTTGGACTGCCACCGGTACCTCGAGCTTCGCTCCGTAGTTAGAACCTGGAAG
TATTTCCCGTCCTTGTTCTCAGTGT---TACCTCATTGTTAATGATGCGAGAGAAGTCTTTGTGTTTGTACTTAAACAAT
CCTTGTATGCCATTTCTTGATGGTACTGCTTCCTGCGGTTAAGCTGTGCAATGTAGCTAGTTTCCGGCTCTGTTTTGCTC
TATCCTGGCCATATGGGAATTCTGAATTTGCGACGATCTGAATGTCCGTGCATATCATTCATCTTTTCCTGATGGTCGTT
CGGTTTTGGGGTAGCGATGCACTCTCATCATACATAGTTAGTTGCCAGCAGTGCA-------------------TATATG
TCATCATACACCGGTAGGTTTCTT---GGTTGCAATAGGGAGAACAGAAGTTGCTGAAAAACAGTGGTAGATTTGCCAGA
TAGTCATAAT--------ACAGAGGTCAGAAGGTGACATCTCTTTTACTTATCCTGTGCATATTTTTTCCCTATATTTGT
AACAAAAGATGGAGGCAAGATAAGTATGAAGCCTGAGGGGGGAAGAAATATCTTTTGGAATGGTACAAAAATTTGGTCCC
GTGGGAGGACTCACTCATTGAGGTGGACAGCCAATAGGAGGAGAGCACATGGCCCCACTGTTATCCAGACAGGACACACT
CAC--------GGCAGTATATAAGCAGGCACTGCTTAGCCTGATCGTCA-AGCTAACTACAGCA----AAGCAAGCGAGC
ACCACAACCTCGTATTC-AGATTTCTAGATAGACAGGATCAGATTAACCAGAAGATGATGCAGGCCACCGTTGCCTTGTC
GGCCGTGCTGACTGTCGCCGTAAGGGGCAGGCCGGCGGCGAGGAGGAGGAGCGCCACCGTGGCCGCCGGCGGCAGAAGGA
TGCCGGGCGGTGCCGTTCGTGCATCGGCCGCCGCGGCGCCGGAGGCGGACTACAGCTCCAGCGTCTCGTACGTT------
--------------------------------------------------------------------------------
---------------
>chr3A_113
--------------------------------------------------------------------------------
--------------------------------GCAATAACCACTAC--AAAAATTCATTTACCTACCCTGGCTTTTTATG
TTGATGATGATCACAAATGATCATATTAGTTGATGCTTA-TTGGTGATTTGTTTCATAAAAAACCACTTGGTTT-TT---
------------------------TTACATTTAGAGTAATTTAAAGCCTTCAAAGGTTCAGAAATATTTATTAAATAAAA
GTACAACAA----------------------------------------------TTTGTCTTTCG----CAAAAAAAGG
AGAAACTAACAATTTTTTGGAAGGGACTGAAATAATATATTTATTTCTCACCATAACTCTTTATGAAA-TTTTGCGAGTC
ATAATCTAATAGCACTATCTACATATAAGATTTTTTTTC-GCATACTGTTTGAAAATCGTAAAGTTCAAAACCCAATCCA
AAACCAGACATGGATTAAATTTAAGA-GGTTTTAAGAAAAAAAA------------------------------------
-------TCTTGGACGAAACACATTATAGTCCGTGGTCCAACACAAACCTTTTTCCATAAGATAAATGATTTCTAATATT
GAAATCTAAGAGAGAATAACCAAATTTTCC-ATACTATTATAACAAATAG------TGAAATCGATCCAGAACATCATAA
AAGAATCG-----ATGGATGACGAAAGAAGTCACAATTTCTCACCA----------------------------------
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-------------------------------------------TAATTAACCTCTAATTG-TTTTCTCGAAAAATATATA
TA------------------------------------------------------------------------------
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--------------------------------------------------------AAAAAGATGTTATTAATTTCACCA
TTCGTTTTAGGCTGGCAGGCCCGC--GAGTTGCCAACTTTTTAAACTTGTAG------------GCCCATTACTCACAAT
CTTCCATAAACCGAAGCCCATTTACATCTCCATATCAGTCTCAGAAAAAGGTTCATCT---GAATTTCGAAACACACAAA
GAGAGACGCACTCACTCTGCT----CCCCAGGTCCCTCCACTCGAGCCGAGAAACTGCCGCCGCCGCCGCCGCCGCCGCC
GCCGCCCA----------CCGGAGCCGGAGATGAAGAAGATCTTCGGCGCCAAGAAGAGCAGGGACCCGCCGCCCACCAT
CCAGGACGCCACCAACCAAGTCAGCCTC-CCCCTC-------CCTTCTCCCCCGATTCGTTTCCCCTTCCCACGCCCGAA
ATCCCATCCAATGCCGCTCCGATTTGGCCGGTGGCACAGATAAACAAGCGGGGCGAGAGCGTGGACGAGAAGATCAAGAA
GCTGGACGAGGAGCTGGCGCGGTACAAGGAGCAGATCCGCAAGGCCCGCCCCGGCCCCTCGCAGGAGGCCATCAAGGCCC
GCGCCATCAGGCTCCTCAAGCACAAGCGCATGTACGAGGAGCAGCGCAACATGCTCTACAACCAGACCTACAACCTCGAC
CAGGTCGGCTTCGCCGCCGACGGCCTCAAGGACGCGCAGCAGACCGTACGCA---CCCGCCCTTCATCTCCCCGTGTGTG
CTGCTGTAGCAGTTCAGTCCAGTTCATCTG---TCCGGTTGCTGAATTTTCTTGATTTTCTGTCTGTCCAGATGGGCGCG
ATGAAGGCCGCCAACAAGGAGCTCAAGGGGATGATGAAGACCGTCAAGATCGAGGACATCGATGTACGTTTTGCTCCTGC
CCATTCTTAGTTCATCTGTCGCTGCTGCCGAATTCGTATTACCATGTATGGTCTGTCAGGTTTTGTTTTGCTACAATTTG
AGTATTTCAGTGTCGCGGGTGATG-------------CCCTCTAAT----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------TTAGTTTCAAATA
GCAGTAACTAAATTAGAGGGGATACATATATCAGTAATCATTCACCTGCAAATTTCCAAGACATAGCCCAATAACATATG
TAGTGCGCAATGAACACTTTAAGCAGAAAGGTTATACTCCACTCATACTGTCAAATATGGTGTATCGGAAGCTTAGCATC
ATACTAACTTTAGAGTCCGTCCTTGCGATTGGCTAATCTGGGATCGCATTTCCCAGCAGTATCCATGGGTTTTCATGAAG
AAAATTACACAC-----AAAAAAAAACCGTATCCTTC-TTTTTACATCTTC--TGTTCTTGTGCAACATCTGGCCAGACC
AGAAATTATTGGACCGGCAATCAGCCTTACTTATCATACATCCTGCAACTATCAATTTCTTTTCATAACAAAGATTGCAT
ATGATGTGATTGAAGAGCCATGGTCATTTTGGCAACCATCCGAATAAGGACCAACCTCCTACTAGTGCTAGCTTACACTG
ACATATTTGGTCAGGGCCTAAACAATATTAATGTGGTATCTACAGTGGGATGTACAACTAAGTGCCTCTTTGGTTACCTG
CATCATTTTTGGCCTCCTTGCATCGGTGGCTGAGTAGAGCCTGGCTGAGCTAATGCAGGCTGAAAAACCATGTTCTGAAC
CTAGTTTGGTTGCCCGCAAAACCCCAGCCTGTATTATAGGCGAACAACTAGCACGCCGTTTGGTTGCAGGCATGTGATTC
CCAGATGCAAGGTGCTGCTGTTTGGTTACGTGCAAGACATGCGGTGTGG-AACCTTTTGTTCCAGTGGTGAC--------
-----ACACGCACTC-ATAGGCAGAACAGAGCAATTTGAACAACCATTCACACTACATTAGGTACTAC------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------ATTGACAACCA
TAGCCATAATAATGCCAG------AGTCTTAAGCAGGTAGTCATAATATAAACTTCACAGACAGACA----GAAAGACAG
ACAGACTAAACATCCTGCATCAAGGCAAGTGCTTCGTCGTGCTTCTTGCACTTGGCCACCTTATAAGGGCA-AGTTGGTT
AGGGCCTAACAAATTTA-------TTCCACAGTGGGATGTACAACTTAATGACTTGATGAACCACCTTAAATGTTTCTCT
TTCAATGTTTGTTCATTACTCTCCCTTCATTTGATGGTAACACAAGTTCCTTTGTGAGCTGTCATTTGTAGAATATGCAA
GATGAAATGACGGATCTGATGGACGTGAGCAACGAGATACAAGAATCTCTTGGTAGAAGCTACAACATTCCCGATGATGT
TGACGAGGAAGATCTAATGGGAGGTACGGAGGCTGTATTTTCAGCTGGAGAAGACTGTAACTTGATCTGGC-TTTACTGC
TCTTTTTGTGAACTGTAATTTTA--------------AGAATATGCAAAGTTAATATTTTCAGTTGGAGAATATATCCCG
ATGTCATAAATAGTCTAGATTTCTTTCTTTGCCATGTTAGTCCCAGGCATGTACTCTTCTGGGGGGAATTACATAGTCGT
AAATAGTCTAGATGTCCTCTATTTACTGTCCTCATTTG----TTTTTGTATTGAACATTGCAGAGCTGGATGCTCTGGAA
GCTGATATGGAGTTTGAGTCAGCTGCAGTCCCATCGTACCTTCAGCCAGATGAGGAATCTGATCTTAACTTGCCCGCTGC
ACCGACTTATCCTGCAGCAGTTCCCGTAAGCAGGCACCAGGTAAGTGGATTCCATGTGCATTTACATTGCACAACAGAAC
GCAATTCACACAGCATATTTAACTTGGCATAATATTACCCTGAGTTTCTGGTGTTTGTTTCCTTGGGGGTGAATTAGCAT
GATAAAAATAGTGCATGGGTTCTGAAATCCAAACACTGTTCAGTATCTGTTACCACTTTATGCCTGAGTTTCTCGCATAT
GCTTTCTGTTATTTTTGGACAAAAGGCATAAATTTACCAATCAACCTCCACACATGAACACACTAAG-------------
--TTAACATGCTAGGAAAAAGTTGGATGACTTGGTATAGTTGGTTTGCCCCTTGTTATTTGATACCTGGTAGGACGATGC
TGCATGATTTGCTACAGTTGACCGATGACTAAGCAACCCC------------GAGCCATTATTGAATAATGGGTCGTTT-
ATTTCGTTATGTGGTGCAGGAGGACGAGCTTGGACTGCCACCGGTACCTCGAGCGTCGCTCCGTAGTTAGAACCTGGAAG
TATTTCCCGACCGTGTTCCAAGTGTTACTACCTCATTGTCAATGATGCGAGAGAAGTCTTTGTGTTTGCACTTGAACAAT
CCTTGTAAGCTATTTCTTGATGGTACTGCCTGTTATGGTTAAGCTGTGCAATGTAGCTAGTTTCCGGCTCTGCTTTGCTC
TATCCTGGCTGTATGGGGATTCCGAATTTGCGACGAACTGAATCTCCGTGCATATCGTTCATTATTTTCTGGTGGCAGTT
CCTGTTCGGGGCAGCCATGTACTCTCATCATAGTTAGTTGCCAGTGC------------------------------ATA
TCATCATTCACCAGTAGGTTTCTTATTGGTTGCAATAAAGAGAAGATAAGTTGCTAAAAAACAATGGTAGATTTCTCAAA
CAAAAACTGGAGATAGGAACAGGGGTCAGAAGGAGACATCTCTTTTACTTATCCTGTGCACATTTTGCCC----ATTTGT
AACAAATAATGGGGGCAAGATAAGTATGAAGCCTG-GGGTGGCAGAAATATCTTTGGAGTGGTAC--AAAATTTGGTCCC
GTGGGAGGACTCACTCATTGAGGTGGACAGCCAATGGGAGGAGAGCACATGGCCCCACTGTTATCCAAACAGGACACACT
CACACATCCATGGCAGTATATAAGCAGGCAGTGCTTAGCCTGATCGTCAGAGCTAACTACAACA----A--------AGC
ACCACAACCTCGTATTC-AGATTTCTAGATAGACAGGATCAGATTAACCAGGAGATGATGCAGGCCACCGTTGCTTTGTC
GGCCGTGCTGCCTGTCGCCGTAAGGGGCAGGCCGGCGGCGAGGAGGAGGAGCGCCACCGTTGCTGGCGGCGGCAGAAGGA
CCGTGGGTGCCGGCGTCCGGGCATCGGCGGCGGCGGCGCCGGAGGCGGACTACAGCTCCAGCGTCTCGTACGTTCTCTCT
C-------------------------------------------------------------------------------
---------------
>SNPs
SSSSSS-SSSSSS--SSSS-SSSSSSSSS-----S-----------------------S----SSSS-SSSSSSSS--SS
SS--S-------------S---S-------S-------------------------------------------------
-------------------------------S--------SS-------------------------S--S---S-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------S-----------------------S-----S-----
------S------S---------------S---------S-----S---------------------S------------
-----------------------------------------S--------------------------------------
-------------------------------------------S------------------------------------
-------------------S----------S----------------------S--------------------------
---------------S-----S----------------------------------------------------------
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----------------------------------------------------------------------------S--S
--------------------------------------------------------------------------------
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---S----------------------------------------------------SS-SS--SSSS-S-SSSSS-----
---------------------------------------------------S----------------------------
--------------------------S-----------------------------------------------------
------SSSSSSSSSSSS-------------------------------------------S------S-----------
------------------------------S-SS-SSSSSSS--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------S-S-S
-S-----------S----------------S---------------------------------------------S--S
--------------------------------------------------------------------------------
-----------------------------------S----S---------S-----------------SS----------
---------------S--S---------S---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------S------------
----------------S------------------------SSS-SSSS-SS------------------------S---
-------S----------S-----------------------------------------------------S-------
-----------S-----S--S----SS----------S-------------------------------------S----
-------------S-------------------S---------------S--------S---------------------
--------------S------------------------------------------------------------S-S--
----------------------------------S---------------S-----S-----------------------
-------------------------------S------------------------------------------------
-------------S--------------S---------------S--------S--------------------------
--------------S---S-----------------------------------------------------------S-
---------------S---------------------------------S------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----S-----------SSSSSSS--------S---------------------------------SSSSS-------S-
------------------------------------SS------------------------------S-----------
------------------------S-----------------S-------------------------------------
-----------------------------S--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------S-------------SSSSSSSSSSSSSS--------------------------S----------------
------------S-------------------------------------------------------------------
----------------S---S--------------S--S-S---------------------------------------
-----------------------------------S--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------S-----------------------
------------------S-------------------------------------------------------------
-S------------------------------SS---------------------S-------SS-SSSSSSSSSSSSSS
SS--------S-----S---S----------------------------S-----S----S----------------S--
--------------------------------------------------------------------------------
-------------------------------------------------------------------------S------
-------------------------------------------------S------------------------------
--------------------------------------S-----------------------------------------
--------------------------------------------------------------------------------
----------------S-------------------S-SS--SSSSSSSSSSSS-SSSSSSSSSSSSSSSSSSS---S--
--------------------------------------------------------------------------------
---------------SS----------------S-----S----------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------SS--S-----S
-S-------------------------------------------------------SS---SSSSSS------------
-----------------S---S--S--------S--------------SS----------------S-------------
----------------S-SS---S---------------------S---------S-----------------------S
-S--------------------------S----------------------------------------------SSSSS
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS
>forward_2747
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-------AGACGCACTCACTCTGCTCA-----------------------------------------------------
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>reverse_4512
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-------------------------------AAGTAGAGCCTGGCTGAGCT-----------------------------
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>forward_3311
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-----------TGCCAGTCCAGTTCATCTGC-------------------------------------------------
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>reverse_5111
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----------------------------------------------------------------------GGACGGACGG
ACAGACTAAA----------------------------------------------------------------------
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>forward_4736
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----------------------------------------------------------------------------CCAG
CACAGACACACACTCA----------------------------------------------------------------
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>reverse_6697
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--------------------------------------------------------TTGTCGCGGAAATGGACGTA----
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---------------
