Multiple sequence alignment - TraesCS3D01G078500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G078500 chr3D 100.000 2809 0 0 1 2809 39033868 39031060 0.000000e+00 5188.0
1 TraesCS3D01G078500 chr3D 98.428 318 5 0 1 318 42301494 42301811 6.790000e-156 560.0
2 TraesCS3D01G078500 chr3B 93.624 1631 87 9 340 1958 61897540 61895915 0.000000e+00 2420.0
3 TraesCS3D01G078500 chr3B 91.692 325 22 3 2004 2327 61895912 61895592 1.990000e-121 446.0
4 TraesCS3D01G078500 chr3B 87.984 258 16 7 2360 2602 61895124 61894867 9.840000e-75 291.0
5 TraesCS3D01G078500 chr3B 88.479 217 16 5 2595 2809 61894822 61894613 1.290000e-63 254.0
6 TraesCS3D01G078500 chr3A 93.227 1373 86 3 338 1708 50383826 50382459 0.000000e+00 2013.0
7 TraesCS3D01G078500 chr3A 89.544 526 31 8 1739 2256 50382461 50381952 0.000000e+00 645.0
8 TraesCS3D01G078500 chr3A 95.556 45 2 0 1872 1916 50382248 50382204 3.880000e-09 73.1
9 TraesCS3D01G078500 chr5D 97.554 327 8 0 1 327 32703350 32703024 6.790000e-156 560.0
10 TraesCS3D01G078500 chr5D 98.428 318 5 0 1 318 124424624 124424941 6.790000e-156 560.0
11 TraesCS3D01G078500 chr2D 98.428 318 5 0 1 318 250187135 250186818 6.790000e-156 560.0
12 TraesCS3D01G078500 chr2D 98.113 318 6 0 1 318 111238067 111237750 3.160000e-154 555.0
13 TraesCS3D01G078500 chr2D 97.812 320 7 0 1 320 56065228 56064909 1.140000e-153 553.0
14 TraesCS3D01G078500 chr7D 98.131 321 3 1 1 318 42259792 42259472 8.790000e-155 556.0
15 TraesCS3D01G078500 chr7D 96.418 335 5 5 1 331 7724179 7723848 1.900000e-151 545.0
16 TraesCS3D01G078500 chr7D 81.596 451 71 7 986 1436 631935585 631935147 2.060000e-96 363.0
17 TraesCS3D01G078500 chr7D 81.308 321 39 12 2017 2328 101797711 101797403 1.010000e-59 241.0
18 TraesCS3D01G078500 chr7D 78.899 327 58 6 2015 2334 143950194 143949872 7.880000e-51 211.0
19 TraesCS3D01G078500 chr7D 76.327 245 56 1 1687 1931 152948614 152948856 2.270000e-26 130.0
20 TraesCS3D01G078500 chr4D 98.131 321 3 1 1 318 223442020 223441700 8.790000e-155 556.0
21 TraesCS3D01G078500 chr7B 79.286 700 108 20 983 1677 59180504 59179837 3.300000e-124 455.0
22 TraesCS3D01G078500 chr7B 80.087 462 80 9 986 1447 743457965 743457516 1.610000e-87 333.0
23 TraesCS3D01G078500 chr7B 78.135 311 53 8 2003 2302 107823342 107823648 1.720000e-42 183.0
24 TraesCS3D01G078500 chr7B 75.510 245 58 1 1687 1931 114940179 114940421 4.920000e-23 119.0
25 TraesCS3D01G078500 chr7A 81.699 459 72 6 986 1444 736465812 736466258 3.420000e-99 372.0
26 TraesCS3D01G078500 chr7A 80.997 321 39 12 2017 2328 105766087 105765780 4.680000e-58 235.0
27 TraesCS3D01G078500 chr5A 76.868 281 41 16 1686 1959 459002890 459002627 1.360000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G078500 chr3D 39031060 39033868 2808 True 5188.000000 5188 100.000000 1 2809 1 chr3D.!!$R1 2808
1 TraesCS3D01G078500 chr3B 61894613 61897540 2927 True 852.750000 2420 90.444750 340 2809 4 chr3B.!!$R1 2469
2 TraesCS3D01G078500 chr3A 50381952 50383826 1874 True 910.366667 2013 92.775667 338 2256 3 chr3A.!!$R1 1918
3 TraesCS3D01G078500 chr7B 59179837 59180504 667 True 455.000000 455 79.286000 983 1677 1 chr7B.!!$R1 694

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
232 233 0.036164 TTGGTGCGGCATACAAGAGT 59.964 50.0 15.89 0.0 0.0 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1946 1959 0.450583 GATGTGGTGCATGCACTCTG 59.549 55.0 40.86 0.0 45.52 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.864334 GGCGAGGATGGGTGCAGG 62.864 72.222 0.00 0.00 0.00 4.85
21 22 4.864334 GCGAGGATGGGTGCAGGG 62.864 72.222 0.00 0.00 0.00 4.45
22 23 3.402681 CGAGGATGGGTGCAGGGT 61.403 66.667 0.00 0.00 0.00 4.34
23 24 2.063979 CGAGGATGGGTGCAGGGTA 61.064 63.158 0.00 0.00 0.00 3.69
24 25 1.832912 GAGGATGGGTGCAGGGTAG 59.167 63.158 0.00 0.00 0.00 3.18
25 26 0.983378 GAGGATGGGTGCAGGGTAGT 60.983 60.000 0.00 0.00 0.00 2.73
26 27 0.550147 AGGATGGGTGCAGGGTAGTT 60.550 55.000 0.00 0.00 0.00 2.24
27 28 0.331616 GGATGGGTGCAGGGTAGTTT 59.668 55.000 0.00 0.00 0.00 2.66
28 29 1.272480 GGATGGGTGCAGGGTAGTTTT 60.272 52.381 0.00 0.00 0.00 2.43
29 30 1.818674 GATGGGTGCAGGGTAGTTTTG 59.181 52.381 0.00 0.00 0.00 2.44
30 31 0.553819 TGGGTGCAGGGTAGTTTTGT 59.446 50.000 0.00 0.00 0.00 2.83
31 32 0.958822 GGGTGCAGGGTAGTTTTGTG 59.041 55.000 0.00 0.00 0.00 3.33
32 33 0.958822 GGTGCAGGGTAGTTTTGTGG 59.041 55.000 0.00 0.00 0.00 4.17
33 34 1.477923 GGTGCAGGGTAGTTTTGTGGA 60.478 52.381 0.00 0.00 0.00 4.02
34 35 1.880027 GTGCAGGGTAGTTTTGTGGAG 59.120 52.381 0.00 0.00 0.00 3.86
35 36 0.881796 GCAGGGTAGTTTTGTGGAGC 59.118 55.000 0.00 0.00 0.00 4.70
36 37 1.545651 GCAGGGTAGTTTTGTGGAGCT 60.546 52.381 0.00 0.00 0.00 4.09
37 38 2.290071 GCAGGGTAGTTTTGTGGAGCTA 60.290 50.000 0.00 0.00 0.00 3.32
38 39 3.622455 GCAGGGTAGTTTTGTGGAGCTAT 60.622 47.826 0.00 0.00 0.00 2.97
39 40 3.941483 CAGGGTAGTTTTGTGGAGCTATG 59.059 47.826 0.00 0.00 0.00 2.23
40 41 3.054361 AGGGTAGTTTTGTGGAGCTATGG 60.054 47.826 0.00 0.00 0.00 2.74
41 42 3.308188 GGGTAGTTTTGTGGAGCTATGGT 60.308 47.826 0.00 0.00 0.00 3.55
42 43 3.689649 GGTAGTTTTGTGGAGCTATGGTG 59.310 47.826 0.00 0.00 0.00 4.17
43 44 3.788227 AGTTTTGTGGAGCTATGGTGA 57.212 42.857 0.00 0.00 0.00 4.02
44 45 3.679389 AGTTTTGTGGAGCTATGGTGAG 58.321 45.455 0.00 0.00 0.00 3.51
45 46 3.327757 AGTTTTGTGGAGCTATGGTGAGA 59.672 43.478 0.00 0.00 0.00 3.27
46 47 3.616956 TTTGTGGAGCTATGGTGAGAG 57.383 47.619 0.00 0.00 0.00 3.20
47 48 0.826715 TGTGGAGCTATGGTGAGAGC 59.173 55.000 0.00 0.00 36.62 4.09
48 49 0.105778 GTGGAGCTATGGTGAGAGCC 59.894 60.000 0.00 0.00 37.10 4.70
49 50 1.365633 GGAGCTATGGTGAGAGCCG 59.634 63.158 0.00 0.00 37.10 5.52
50 51 1.109920 GGAGCTATGGTGAGAGCCGA 61.110 60.000 0.00 0.00 37.10 5.54
51 52 0.313672 GAGCTATGGTGAGAGCCGAG 59.686 60.000 0.00 0.00 37.10 4.63
52 53 0.106469 AGCTATGGTGAGAGCCGAGA 60.106 55.000 0.00 0.00 37.10 4.04
53 54 0.313672 GCTATGGTGAGAGCCGAGAG 59.686 60.000 0.00 0.00 29.51 3.20
54 55 1.974265 CTATGGTGAGAGCCGAGAGA 58.026 55.000 0.00 0.00 0.00 3.10
55 56 1.879380 CTATGGTGAGAGCCGAGAGAG 59.121 57.143 0.00 0.00 0.00 3.20
56 57 0.257328 ATGGTGAGAGCCGAGAGAGA 59.743 55.000 0.00 0.00 0.00 3.10
57 58 0.038310 TGGTGAGAGCCGAGAGAGAA 59.962 55.000 0.00 0.00 0.00 2.87
58 59 0.738389 GGTGAGAGCCGAGAGAGAAG 59.262 60.000 0.00 0.00 0.00 2.85
59 60 1.459450 GTGAGAGCCGAGAGAGAAGT 58.541 55.000 0.00 0.00 0.00 3.01
60 61 1.132262 GTGAGAGCCGAGAGAGAAGTG 59.868 57.143 0.00 0.00 0.00 3.16
61 62 0.738389 GAGAGCCGAGAGAGAAGTGG 59.262 60.000 0.00 0.00 0.00 4.00
62 63 1.140804 GAGCCGAGAGAGAAGTGGC 59.859 63.158 0.00 0.00 46.07 5.01
63 64 2.185608 GCCGAGAGAGAAGTGGCC 59.814 66.667 0.00 0.00 39.83 5.36
64 65 2.492090 CCGAGAGAGAAGTGGCCG 59.508 66.667 0.00 0.00 0.00 6.13
65 66 2.202676 CGAGAGAGAAGTGGCCGC 60.203 66.667 8.71 8.71 0.00 6.53
66 67 2.202676 GAGAGAGAAGTGGCCGCG 60.203 66.667 11.42 0.00 0.00 6.46
67 68 3.708220 GAGAGAGAAGTGGCCGCGG 62.708 68.421 24.05 24.05 0.00 6.46
89 90 3.207669 GGCAGCCTTGGCGATGAG 61.208 66.667 3.29 0.00 40.30 2.90
90 91 2.437359 GCAGCCTTGGCGATGAGT 60.437 61.111 5.95 0.00 0.00 3.41
91 92 2.758089 GCAGCCTTGGCGATGAGTG 61.758 63.158 5.95 0.00 0.00 3.51
92 93 2.437359 AGCCTTGGCGATGAGTGC 60.437 61.111 5.95 0.00 0.00 4.40
93 94 3.869272 GCCTTGGCGATGAGTGCG 61.869 66.667 0.00 0.00 0.00 5.34
94 95 3.197790 CCTTGGCGATGAGTGCGG 61.198 66.667 0.00 0.00 0.00 5.69
119 120 4.570663 CTCGAAGTAGCCGGGCGG 62.571 72.222 14.39 0.00 38.57 6.13
156 157 3.700198 CGGAGCCATACCCTAAACC 57.300 57.895 0.00 0.00 0.00 3.27
157 158 0.108019 CGGAGCCATACCCTAAACCC 59.892 60.000 0.00 0.00 0.00 4.11
158 159 1.519498 GGAGCCATACCCTAAACCCT 58.481 55.000 0.00 0.00 0.00 4.34
159 160 2.697967 GGAGCCATACCCTAAACCCTA 58.302 52.381 0.00 0.00 0.00 3.53
160 161 2.638363 GGAGCCATACCCTAAACCCTAG 59.362 54.545 0.00 0.00 0.00 3.02
161 162 2.638363 GAGCCATACCCTAAACCCTAGG 59.362 54.545 0.06 0.06 34.52 3.02
162 163 2.251872 AGCCATACCCTAAACCCTAGGA 59.748 50.000 11.48 0.00 36.85 2.94
163 164 2.371179 GCCATACCCTAAACCCTAGGAC 59.629 54.545 11.48 0.00 36.85 3.85
164 165 2.977580 CCATACCCTAAACCCTAGGACC 59.022 54.545 11.48 0.00 36.85 4.46
165 166 2.459555 TACCCTAAACCCTAGGACCG 57.540 55.000 11.48 0.00 36.85 4.79
166 167 0.325954 ACCCTAAACCCTAGGACCGG 60.326 60.000 11.48 0.00 36.85 5.28
167 168 0.325954 CCCTAAACCCTAGGACCGGT 60.326 60.000 6.92 6.92 36.85 5.28
168 169 1.062962 CCCTAAACCCTAGGACCGGTA 60.063 57.143 7.34 0.00 36.85 4.02
169 170 2.426855 CCCTAAACCCTAGGACCGGTAT 60.427 54.545 7.34 0.96 36.85 2.73
170 171 2.896044 CCTAAACCCTAGGACCGGTATC 59.104 54.545 7.34 2.53 36.85 2.24
171 172 2.862850 AAACCCTAGGACCGGTATCT 57.137 50.000 7.34 11.41 0.00 1.98
172 173 2.083628 AACCCTAGGACCGGTATCTG 57.916 55.000 7.34 0.00 0.00 2.90
173 174 1.229131 ACCCTAGGACCGGTATCTGA 58.771 55.000 7.34 0.00 0.00 3.27
174 175 1.787676 ACCCTAGGACCGGTATCTGAT 59.212 52.381 7.34 0.00 0.00 2.90
175 176 2.991713 ACCCTAGGACCGGTATCTGATA 59.008 50.000 7.34 0.00 0.00 2.15
176 177 3.245193 ACCCTAGGACCGGTATCTGATAC 60.245 52.174 17.52 17.52 35.00 2.24
190 191 7.976135 GTATCTGATACCATGAAAGCTGAAT 57.024 36.000 15.40 0.00 0.00 2.57
192 193 9.494271 GTATCTGATACCATGAAAGCTGAATAA 57.506 33.333 15.40 0.00 0.00 1.40
193 194 8.985315 ATCTGATACCATGAAAGCTGAATAAA 57.015 30.769 0.00 0.00 0.00 1.40
194 195 8.806429 TCTGATACCATGAAAGCTGAATAAAA 57.194 30.769 0.00 0.00 0.00 1.52
195 196 8.677300 TCTGATACCATGAAAGCTGAATAAAAC 58.323 33.333 0.00 0.00 0.00 2.43
196 197 8.579850 TGATACCATGAAAGCTGAATAAAACT 57.420 30.769 0.00 0.00 0.00 2.66
197 198 8.461222 TGATACCATGAAAGCTGAATAAAACTG 58.539 33.333 0.00 0.00 0.00 3.16
198 199 6.655078 ACCATGAAAGCTGAATAAAACTGT 57.345 33.333 0.00 0.00 0.00 3.55
199 200 7.054491 ACCATGAAAGCTGAATAAAACTGTT 57.946 32.000 0.00 0.00 0.00 3.16
200 201 6.925165 ACCATGAAAGCTGAATAAAACTGTTG 59.075 34.615 0.00 0.00 0.00 3.33
201 202 6.128742 CCATGAAAGCTGAATAAAACTGTTGC 60.129 38.462 0.00 0.00 0.00 4.17
202 203 6.147864 TGAAAGCTGAATAAAACTGTTGCT 57.852 33.333 0.00 0.00 0.00 3.91
203 204 6.572519 TGAAAGCTGAATAAAACTGTTGCTT 58.427 32.000 6.28 6.28 40.59 3.91
204 205 7.711846 TGAAAGCTGAATAAAACTGTTGCTTA 58.288 30.769 10.97 0.91 38.36 3.09
205 206 8.359642 TGAAAGCTGAATAAAACTGTTGCTTAT 58.640 29.630 10.97 2.97 38.36 1.73
206 207 9.196552 GAAAGCTGAATAAAACTGTTGCTTATT 57.803 29.630 10.97 9.98 38.36 1.40
207 208 8.524870 AAGCTGAATAAAACTGTTGCTTATTG 57.475 30.769 12.52 4.06 37.68 1.90
208 209 7.885297 AGCTGAATAAAACTGTTGCTTATTGA 58.115 30.769 12.52 6.05 0.00 2.57
209 210 8.526147 AGCTGAATAAAACTGTTGCTTATTGAT 58.474 29.630 12.52 0.15 0.00 2.57
210 211 8.589629 GCTGAATAAAACTGTTGCTTATTGATG 58.410 33.333 12.52 6.16 0.00 3.07
211 212 9.844790 CTGAATAAAACTGTTGCTTATTGATGA 57.155 29.630 12.52 0.00 0.00 2.92
216 217 7.894376 AAACTGTTGCTTATTGATGATTTGG 57.106 32.000 0.00 0.00 0.00 3.28
217 218 6.594788 ACTGTTGCTTATTGATGATTTGGT 57.405 33.333 0.00 0.00 0.00 3.67
218 219 6.392354 ACTGTTGCTTATTGATGATTTGGTG 58.608 36.000 0.00 0.00 0.00 4.17
219 220 5.170021 TGTTGCTTATTGATGATTTGGTGC 58.830 37.500 0.00 0.00 0.00 5.01
220 221 4.031418 TGCTTATTGATGATTTGGTGCG 57.969 40.909 0.00 0.00 0.00 5.34
221 222 3.181488 TGCTTATTGATGATTTGGTGCGG 60.181 43.478 0.00 0.00 0.00 5.69
222 223 3.374745 CTTATTGATGATTTGGTGCGGC 58.625 45.455 0.00 0.00 0.00 6.53
223 224 1.184431 ATTGATGATTTGGTGCGGCA 58.816 45.000 0.00 0.00 0.00 5.69
224 225 1.184431 TTGATGATTTGGTGCGGCAT 58.816 45.000 5.72 0.00 0.00 4.40
225 226 2.049888 TGATGATTTGGTGCGGCATA 57.950 45.000 5.72 0.00 0.00 3.14
226 227 1.675483 TGATGATTTGGTGCGGCATAC 59.325 47.619 5.72 3.06 0.00 2.39
227 228 1.675483 GATGATTTGGTGCGGCATACA 59.325 47.619 5.72 6.06 0.00 2.29
228 229 1.539157 TGATTTGGTGCGGCATACAA 58.461 45.000 15.89 15.89 0.00 2.41
229 230 1.472082 TGATTTGGTGCGGCATACAAG 59.528 47.619 18.06 0.00 0.00 3.16
230 231 1.742831 GATTTGGTGCGGCATACAAGA 59.257 47.619 18.06 12.22 0.00 3.02
231 232 1.164411 TTTGGTGCGGCATACAAGAG 58.836 50.000 18.06 0.00 0.00 2.85
232 233 0.036164 TTGGTGCGGCATACAAGAGT 59.964 50.000 15.89 0.00 0.00 3.24
233 234 0.899019 TGGTGCGGCATACAAGAGTA 59.101 50.000 5.72 0.00 34.10 2.59
234 235 1.484653 TGGTGCGGCATACAAGAGTAT 59.515 47.619 5.72 0.00 41.57 2.12
235 236 2.696187 TGGTGCGGCATACAAGAGTATA 59.304 45.455 5.72 0.00 38.88 1.47
236 237 3.323691 TGGTGCGGCATACAAGAGTATAT 59.676 43.478 5.72 0.00 38.88 0.86
237 238 4.525100 TGGTGCGGCATACAAGAGTATATA 59.475 41.667 5.72 0.00 38.88 0.86
238 239 5.011227 TGGTGCGGCATACAAGAGTATATAA 59.989 40.000 5.72 0.00 38.88 0.98
239 240 5.577164 GGTGCGGCATACAAGAGTATATAAG 59.423 44.000 5.72 0.00 38.88 1.73
240 241 6.387465 GTGCGGCATACAAGAGTATATAAGA 58.613 40.000 5.72 0.00 38.88 2.10
241 242 6.528423 GTGCGGCATACAAGAGTATATAAGAG 59.472 42.308 5.72 0.00 38.88 2.85
242 243 6.037098 GCGGCATACAAGAGTATATAAGAGG 58.963 44.000 0.00 0.00 38.88 3.69
243 244 6.565234 CGGCATACAAGAGTATATAAGAGGG 58.435 44.000 0.00 0.00 38.88 4.30
244 245 6.153000 CGGCATACAAGAGTATATAAGAGGGT 59.847 42.308 0.00 0.00 38.88 4.34
245 246 7.338703 CGGCATACAAGAGTATATAAGAGGGTA 59.661 40.741 0.00 0.00 38.88 3.69
246 247 8.468399 GGCATACAAGAGTATATAAGAGGGTAC 58.532 40.741 0.00 0.00 38.88 3.34
247 248 9.021807 GCATACAAGAGTATATAAGAGGGTACA 57.978 37.037 0.00 0.00 38.88 2.90
251 252 8.702819 ACAAGAGTATATAAGAGGGTACAAACC 58.297 37.037 0.00 0.00 45.97 3.27
260 261 2.936928 GGTACAAACCGACTTGGGG 58.063 57.895 0.00 0.00 44.64 4.96
261 262 0.109153 GGTACAAACCGACTTGGGGT 59.891 55.000 0.00 0.00 44.64 4.95
262 263 1.347378 GGTACAAACCGACTTGGGGTA 59.653 52.381 0.00 0.00 44.64 3.69
263 264 2.613725 GGTACAAACCGACTTGGGGTAG 60.614 54.545 0.00 0.00 44.64 3.18
264 265 0.399075 ACAAACCGACTTGGGGTAGG 59.601 55.000 0.00 0.00 44.68 3.18
265 266 0.322187 CAAACCGACTTGGGGTAGGG 60.322 60.000 0.00 0.00 43.65 3.53
266 267 1.494716 AAACCGACTTGGGGTAGGGG 61.495 60.000 0.00 0.00 43.65 4.79
267 268 2.285144 CCGACTTGGGGTAGGGGT 60.285 66.667 0.00 0.00 37.11 4.95
268 269 1.002017 CCGACTTGGGGTAGGGGTA 59.998 63.158 0.00 0.00 37.11 3.69
269 270 1.332889 CCGACTTGGGGTAGGGGTAC 61.333 65.000 0.00 0.00 37.11 3.34
270 271 0.615544 CGACTTGGGGTAGGGGTACA 60.616 60.000 0.00 0.00 0.00 2.90
271 272 1.660242 GACTTGGGGTAGGGGTACAA 58.340 55.000 0.00 0.00 0.00 2.41
272 273 1.987368 GACTTGGGGTAGGGGTACAAA 59.013 52.381 0.00 0.00 0.00 2.83
273 274 2.376181 GACTTGGGGTAGGGGTACAAAA 59.624 50.000 0.00 0.00 0.00 2.44
274 275 2.108776 ACTTGGGGTAGGGGTACAAAAC 59.891 50.000 0.00 0.00 0.00 2.43
275 276 2.136974 TGGGGTAGGGGTACAAAACT 57.863 50.000 0.00 0.00 0.00 2.66
276 277 1.706305 TGGGGTAGGGGTACAAAACTG 59.294 52.381 0.00 0.00 0.00 3.16
277 278 1.987368 GGGGTAGGGGTACAAAACTGA 59.013 52.381 0.00 0.00 0.00 3.41
278 279 2.290514 GGGGTAGGGGTACAAAACTGAC 60.291 54.545 0.00 0.00 0.00 3.51
279 280 2.641321 GGGTAGGGGTACAAAACTGACT 59.359 50.000 0.00 0.00 0.00 3.41
280 281 3.073503 GGGTAGGGGTACAAAACTGACTT 59.926 47.826 0.00 0.00 0.00 3.01
281 282 4.070009 GGTAGGGGTACAAAACTGACTTG 58.930 47.826 0.00 0.00 0.00 3.16
282 283 3.223674 AGGGGTACAAAACTGACTTGG 57.776 47.619 0.00 0.00 0.00 3.61
283 284 2.781174 AGGGGTACAAAACTGACTTGGA 59.219 45.455 0.00 0.00 0.00 3.53
284 285 2.882761 GGGGTACAAAACTGACTTGGAC 59.117 50.000 0.00 1.73 36.96 4.02
285 286 3.434596 GGGGTACAAAACTGACTTGGACT 60.435 47.826 0.00 0.00 37.69 3.85
286 287 4.202388 GGGGTACAAAACTGACTTGGACTA 60.202 45.833 0.00 0.00 37.69 2.59
287 288 4.995487 GGGTACAAAACTGACTTGGACTAG 59.005 45.833 0.00 0.00 37.69 2.57
288 289 5.221581 GGGTACAAAACTGACTTGGACTAGA 60.222 44.000 0.00 0.00 37.69 2.43
289 290 6.285990 GGTACAAAACTGACTTGGACTAGAA 58.714 40.000 0.00 0.00 37.69 2.10
290 291 6.424207 GGTACAAAACTGACTTGGACTAGAAG 59.576 42.308 0.00 0.00 37.69 2.85
291 292 5.990668 ACAAAACTGACTTGGACTAGAAGT 58.009 37.500 0.00 0.00 36.33 3.01
292 293 6.049790 ACAAAACTGACTTGGACTAGAAGTC 58.950 40.000 13.36 13.36 46.45 3.01
299 300 6.058827 GACTTGGACTAGAAGTCGTATACC 57.941 45.833 6.96 0.00 45.96 2.73
300 301 5.503927 ACTTGGACTAGAAGTCGTATACCA 58.496 41.667 0.00 0.00 45.96 3.25
301 302 6.127793 ACTTGGACTAGAAGTCGTATACCAT 58.872 40.000 0.00 0.00 45.96 3.55
302 303 7.285566 ACTTGGACTAGAAGTCGTATACCATA 58.714 38.462 0.00 0.00 45.96 2.74
303 304 7.776969 ACTTGGACTAGAAGTCGTATACCATAA 59.223 37.037 0.00 0.00 45.96 1.90
304 305 8.701908 TTGGACTAGAAGTCGTATACCATAAT 57.298 34.615 0.00 0.00 45.96 1.28
305 306 8.107399 TGGACTAGAAGTCGTATACCATAATG 57.893 38.462 0.00 0.00 45.96 1.90
306 307 7.940688 TGGACTAGAAGTCGTATACCATAATGA 59.059 37.037 0.00 0.00 45.96 2.57
307 308 8.235905 GGACTAGAAGTCGTATACCATAATGAC 58.764 40.741 0.00 0.00 45.96 3.06
308 309 8.921353 ACTAGAAGTCGTATACCATAATGACT 57.079 34.615 0.00 0.39 42.40 3.41
311 312 8.921353 AGAAGTCGTATACCATAATGACTACT 57.079 34.615 8.63 0.00 40.29 2.57
312 313 9.001542 AGAAGTCGTATACCATAATGACTACTC 57.998 37.037 8.63 5.22 40.29 2.59
313 314 7.361889 AGTCGTATACCATAATGACTACTCG 57.638 40.000 6.97 0.00 39.59 4.18
314 315 7.157347 AGTCGTATACCATAATGACTACTCGA 58.843 38.462 6.97 0.00 39.59 4.04
315 316 7.658982 AGTCGTATACCATAATGACTACTCGAA 59.341 37.037 6.97 0.00 39.59 3.71
316 317 7.743838 GTCGTATACCATAATGACTACTCGAAC 59.256 40.741 0.00 0.00 0.00 3.95
317 318 7.442062 TCGTATACCATAATGACTACTCGAACA 59.558 37.037 0.00 0.00 0.00 3.18
318 319 8.235226 CGTATACCATAATGACTACTCGAACAT 58.765 37.037 0.00 0.00 0.00 2.71
319 320 9.343103 GTATACCATAATGACTACTCGAACATG 57.657 37.037 0.00 0.00 0.00 3.21
320 321 5.601662 ACCATAATGACTACTCGAACATGG 58.398 41.667 0.00 0.00 37.12 3.66
321 322 5.362717 ACCATAATGACTACTCGAACATGGA 59.637 40.000 0.00 0.00 35.47 3.41
322 323 5.692204 CCATAATGACTACTCGAACATGGAC 59.308 44.000 0.00 0.00 33.73 4.02
323 324 4.801330 AATGACTACTCGAACATGGACA 57.199 40.909 0.00 0.00 0.00 4.02
324 325 4.801330 ATGACTACTCGAACATGGACAA 57.199 40.909 0.00 0.00 0.00 3.18
325 326 4.801330 TGACTACTCGAACATGGACAAT 57.199 40.909 0.00 0.00 0.00 2.71
326 327 5.147330 TGACTACTCGAACATGGACAATT 57.853 39.130 0.00 0.00 0.00 2.32
327 328 4.929211 TGACTACTCGAACATGGACAATTG 59.071 41.667 3.24 3.24 0.00 2.32
328 329 4.894784 ACTACTCGAACATGGACAATTGT 58.105 39.130 11.78 11.78 0.00 2.71
329 330 6.032956 ACTACTCGAACATGGACAATTGTA 57.967 37.500 11.95 0.00 0.00 2.41
330 331 6.460781 ACTACTCGAACATGGACAATTGTAA 58.539 36.000 11.95 3.30 0.00 2.41
331 332 6.932400 ACTACTCGAACATGGACAATTGTAAA 59.068 34.615 11.95 2.90 0.00 2.01
332 333 6.627395 ACTCGAACATGGACAATTGTAAAA 57.373 33.333 11.95 0.13 0.00 1.52
333 334 7.033530 ACTCGAACATGGACAATTGTAAAAA 57.966 32.000 11.95 0.00 0.00 1.94
363 364 1.837439 GTACCATCCATCCAGTGACCA 59.163 52.381 0.00 0.00 0.00 4.02
367 368 0.990282 ATCCATCCAGTGACCAGGGG 60.990 60.000 0.00 0.00 0.00 4.79
404 405 3.230355 TCGTTTTGCGTAAACATGCATC 58.770 40.909 0.00 0.00 45.20 3.91
634 639 1.535028 CGGCAACAGCAACAGAACATA 59.465 47.619 0.00 0.00 0.00 2.29
664 669 0.324830 GAGCAGGTGGGTAGAGGACT 60.325 60.000 0.00 0.00 0.00 3.85
665 670 0.117340 AGCAGGTGGGTAGAGGACTT 59.883 55.000 0.00 0.00 0.00 3.01
668 673 1.550976 CAGGTGGGTAGAGGACTTCAC 59.449 57.143 0.00 0.00 34.02 3.18
749 754 1.633774 AGAAAAGCTCGAGAGACCCA 58.366 50.000 18.75 0.00 35.39 4.51
775 780 1.982395 TCACTACCAGGGTGAGGCG 60.982 63.158 0.06 0.00 38.57 5.52
791 796 0.727398 GGCGCTGACAATAGGACAAC 59.273 55.000 7.64 0.00 0.00 3.32
792 797 1.438651 GCGCTGACAATAGGACAACA 58.561 50.000 0.00 0.00 0.00 3.33
795 800 1.740025 GCTGACAATAGGACAACAGGC 59.260 52.381 0.00 0.00 0.00 4.85
800 805 1.019278 AATAGGACAACAGGCGCACG 61.019 55.000 10.83 0.63 0.00 5.34
836 841 5.022787 AGGAAGCTATCTCTATCCATCCAC 58.977 45.833 1.38 0.00 32.47 4.02
843 848 1.347050 CTCTATCCATCCACTGCCAGG 59.653 57.143 0.00 0.00 0.00 4.45
850 855 1.903877 ATCCACTGCCAGGAGGAACG 61.904 60.000 11.48 0.00 38.83 3.95
874 881 6.690528 CGCAATTAAACAAAGGCAAAAATGTT 59.309 30.769 0.00 0.00 37.59 2.71
997 1004 1.188219 GCGATCCCATAGAGCCTCCA 61.188 60.000 0.00 0.00 0.00 3.86
1058 1066 2.686106 GGAGCTTCCACCGGGGTA 60.686 66.667 6.32 0.00 36.28 3.69
1156 1164 2.102357 CGATCGGTGAGGTGGACG 59.898 66.667 7.38 0.00 0.00 4.79
1251 1259 2.590114 GGACCGCAAGTACCCCACT 61.590 63.158 0.00 0.00 40.05 4.00
1268 1276 1.002659 CACTGGGATACGAACCAACCA 59.997 52.381 0.00 0.00 36.09 3.67
1299 1307 1.541310 CCGGCTACTGGAAGACCACA 61.541 60.000 0.00 0.00 41.77 4.17
1508 1516 2.073816 CATTAACGCGTCTTCCAAGGT 58.926 47.619 14.44 0.00 0.00 3.50
1509 1517 3.255725 CATTAACGCGTCTTCCAAGGTA 58.744 45.455 14.44 0.00 0.00 3.08
1510 1518 3.598019 TTAACGCGTCTTCCAAGGTAT 57.402 42.857 14.44 0.00 0.00 2.73
1511 1519 4.717233 TTAACGCGTCTTCCAAGGTATA 57.283 40.909 14.44 0.00 0.00 1.47
1565 1575 4.805609 TCAAATCATGAACATGGTCGTCCA 60.806 41.667 1.37 3.25 40.86 4.02
1582 1592 4.023792 TCGTCCATCCATACATACGTACAC 60.024 45.833 0.00 0.00 0.00 2.90
1620 1630 9.585099 GACCATAATTTATTTGCACTGATTCAA 57.415 29.630 0.00 0.00 0.00 2.69
1719 1732 1.125093 ACATGAGGACGTTGGGACCA 61.125 55.000 0.00 0.00 0.00 4.02
1721 1734 1.553690 ATGAGGACGTTGGGACCAGG 61.554 60.000 0.00 0.00 0.00 4.45
1774 1787 2.568623 ACAACCACCCACAAGATCTC 57.431 50.000 0.00 0.00 0.00 2.75
1778 1791 0.898320 CCACCCACAAGATCTCGTCT 59.102 55.000 0.00 0.00 39.43 4.18
1935 1948 3.123284 TGCAGCGCATTTTATTTTTCAGC 59.877 39.130 11.47 0.00 31.71 4.26
1946 1959 7.401484 TTTTATTTTTCAGCGTGATTCCAAC 57.599 32.000 0.00 0.00 0.00 3.77
1978 1991 1.482593 ACCACATCAGAAGATCGGTCC 59.517 52.381 0.00 0.00 33.72 4.46
2013 2026 5.885912 ACATCTATATTGGTTGGCTCGTTTT 59.114 36.000 0.00 0.00 0.00 2.43
2035 2048 2.093973 GCTTGCCTCTCTTGTGCTAGTA 60.094 50.000 0.00 0.00 31.80 1.82
2126 2140 2.817665 ACTTCCTAGGAGTGTACACCC 58.182 52.381 22.28 20.96 0.00 4.61
2141 2155 3.744238 ACACCCTGCATGTTTTAAACC 57.256 42.857 5.32 0.00 0.00 3.27
2142 2156 3.304829 ACACCCTGCATGTTTTAAACCT 58.695 40.909 5.32 0.00 0.00 3.50
2143 2157 4.475345 ACACCCTGCATGTTTTAAACCTA 58.525 39.130 5.32 0.00 0.00 3.08
2144 2158 4.522789 ACACCCTGCATGTTTTAAACCTAG 59.477 41.667 5.32 0.00 0.00 3.02
2151 2165 8.292448 CCTGCATGTTTTAAACCTAGCTATATG 58.708 37.037 5.32 1.48 0.00 1.78
2252 2275 3.493877 TGGAAACAAATTTTGAGCATGCG 59.506 39.130 15.81 0.00 37.44 4.73
2293 2316 7.016153 TCCATCAACCACATAAACTCTTACT 57.984 36.000 0.00 0.00 0.00 2.24
2300 2323 9.052759 CAACCACATAAACTCTTACTTACACTT 57.947 33.333 0.00 0.00 0.00 3.16
2358 2762 3.896122 AGAAAAACACACACACACACAC 58.104 40.909 0.00 0.00 0.00 3.82
2436 2898 7.630082 GCCTTAATCAATGAGAATATGATGGCC 60.630 40.741 0.00 0.00 35.63 5.36
2455 2917 2.287427 GCCGAGATGGAATGAAATGCAG 60.287 50.000 0.00 0.00 42.00 4.41
2458 2920 4.497006 CCGAGATGGAATGAAATGCAGAAC 60.497 45.833 0.00 0.00 42.00 3.01
2526 2988 5.826737 AGGATTTCATGATTGGTCTAAGCAG 59.173 40.000 0.00 0.00 38.21 4.24
2543 3006 8.349983 GTCTAAGCAGGTCTGAAACAATTTTTA 58.650 33.333 1.65 0.00 0.00 1.52
2559 3028 5.796350 ATTTTTAGGTCACGCATCAGTAC 57.204 39.130 0.00 0.00 0.00 2.73
2636 3161 6.849588 GTTAGGAGAAACTAACGGAACAAA 57.150 37.500 0.00 0.00 42.17 2.83
2662 3187 9.744468 AATTTATTTTCTCACTAACCACACAAC 57.256 29.630 0.00 0.00 0.00 3.32
2672 3197 4.821805 ACTAACCACACAACAGAATTGGAG 59.178 41.667 0.00 0.00 0.00 3.86
2681 3206 2.187958 ACAGAATTGGAGACGGGATCA 58.812 47.619 0.00 0.00 0.00 2.92
2685 3210 4.752101 CAGAATTGGAGACGGGATCAATAC 59.248 45.833 0.00 0.00 30.67 1.89
2686 3211 4.656112 AGAATTGGAGACGGGATCAATACT 59.344 41.667 0.00 0.00 30.67 2.12
2687 3212 5.839063 AGAATTGGAGACGGGATCAATACTA 59.161 40.000 0.00 0.00 30.67 1.82
2688 3213 5.730296 ATTGGAGACGGGATCAATACTAG 57.270 43.478 0.00 0.00 0.00 2.57
2689 3214 2.891580 TGGAGACGGGATCAATACTAGC 59.108 50.000 0.00 0.00 0.00 3.42
2690 3215 2.095161 GGAGACGGGATCAATACTAGCG 60.095 54.545 0.00 0.00 0.00 4.26
2701 3226 0.756903 ATACTAGCGGTGGCGGAATT 59.243 50.000 0.00 0.00 46.35 2.17
2702 3227 1.401761 TACTAGCGGTGGCGGAATTA 58.598 50.000 0.00 0.00 46.35 1.40
2738 3263 2.487934 CTGGGCAGTGACATGTATAGC 58.512 52.381 0.00 0.54 0.00 2.97
2760 3285 1.537202 CAGGAGAAAACAAAGGAGCCG 59.463 52.381 0.00 0.00 0.00 5.52
2765 3290 4.062991 GAGAAAACAAAGGAGCCGAACTA 58.937 43.478 0.00 0.00 0.00 2.24
2767 3292 4.275196 AGAAAACAAAGGAGCCGAACTAAC 59.725 41.667 0.00 0.00 0.00 2.34
2781 3308 2.651382 ACTAACCTGCCGAAAACCTT 57.349 45.000 0.00 0.00 0.00 3.50
2795 3322 5.176774 CCGAAAACCTTGCCAAATTACTTTC 59.823 40.000 0.00 0.00 0.00 2.62
2800 3327 3.989817 CCTTGCCAAATTACTTTCTGTGC 59.010 43.478 0.00 0.00 0.00 4.57
2801 3328 4.501229 CCTTGCCAAATTACTTTCTGTGCA 60.501 41.667 0.00 0.00 0.00 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.864334 CCTGCACCCATCCTCGCC 62.864 72.222 0.00 0.00 0.00 5.54
4 5 4.864334 CCCTGCACCCATCCTCGC 62.864 72.222 0.00 0.00 0.00 5.03
5 6 2.032860 CTACCCTGCACCCATCCTCG 62.033 65.000 0.00 0.00 0.00 4.63
6 7 0.983378 ACTACCCTGCACCCATCCTC 60.983 60.000 0.00 0.00 0.00 3.71
7 8 0.550147 AACTACCCTGCACCCATCCT 60.550 55.000 0.00 0.00 0.00 3.24
8 9 0.331616 AAACTACCCTGCACCCATCC 59.668 55.000 0.00 0.00 0.00 3.51
9 10 1.818674 CAAAACTACCCTGCACCCATC 59.181 52.381 0.00 0.00 0.00 3.51
10 11 1.146982 ACAAAACTACCCTGCACCCAT 59.853 47.619 0.00 0.00 0.00 4.00
11 12 0.553819 ACAAAACTACCCTGCACCCA 59.446 50.000 0.00 0.00 0.00 4.51
12 13 0.958822 CACAAAACTACCCTGCACCC 59.041 55.000 0.00 0.00 0.00 4.61
13 14 0.958822 CCACAAAACTACCCTGCACC 59.041 55.000 0.00 0.00 0.00 5.01
14 15 1.880027 CTCCACAAAACTACCCTGCAC 59.120 52.381 0.00 0.00 0.00 4.57
15 16 1.817740 GCTCCACAAAACTACCCTGCA 60.818 52.381 0.00 0.00 0.00 4.41
16 17 0.881796 GCTCCACAAAACTACCCTGC 59.118 55.000 0.00 0.00 0.00 4.85
17 18 2.568623 AGCTCCACAAAACTACCCTG 57.431 50.000 0.00 0.00 0.00 4.45
18 19 3.054361 CCATAGCTCCACAAAACTACCCT 60.054 47.826 0.00 0.00 0.00 4.34
19 20 3.279434 CCATAGCTCCACAAAACTACCC 58.721 50.000 0.00 0.00 0.00 3.69
20 21 3.689649 CACCATAGCTCCACAAAACTACC 59.310 47.826 0.00 0.00 0.00 3.18
21 22 4.575885 TCACCATAGCTCCACAAAACTAC 58.424 43.478 0.00 0.00 0.00 2.73
22 23 4.530553 TCTCACCATAGCTCCACAAAACTA 59.469 41.667 0.00 0.00 0.00 2.24
23 24 3.327757 TCTCACCATAGCTCCACAAAACT 59.672 43.478 0.00 0.00 0.00 2.66
24 25 3.674997 TCTCACCATAGCTCCACAAAAC 58.325 45.455 0.00 0.00 0.00 2.43
25 26 3.869912 GCTCTCACCATAGCTCCACAAAA 60.870 47.826 0.00 0.00 35.80 2.44
26 27 2.355108 GCTCTCACCATAGCTCCACAAA 60.355 50.000 0.00 0.00 35.80 2.83
27 28 1.208052 GCTCTCACCATAGCTCCACAA 59.792 52.381 0.00 0.00 35.80 3.33
28 29 0.826715 GCTCTCACCATAGCTCCACA 59.173 55.000 0.00 0.00 35.80 4.17
29 30 0.105778 GGCTCTCACCATAGCTCCAC 59.894 60.000 0.00 0.00 38.80 4.02
30 31 1.395045 CGGCTCTCACCATAGCTCCA 61.395 60.000 0.00 0.00 38.80 3.86
31 32 1.109920 TCGGCTCTCACCATAGCTCC 61.110 60.000 0.00 0.00 38.80 4.70
32 33 0.313672 CTCGGCTCTCACCATAGCTC 59.686 60.000 0.00 0.00 38.80 4.09
33 34 0.106469 TCTCGGCTCTCACCATAGCT 60.106 55.000 0.00 0.00 38.80 3.32
34 35 0.313672 CTCTCGGCTCTCACCATAGC 59.686 60.000 0.00 0.00 38.03 2.97
35 36 1.879380 CTCTCTCGGCTCTCACCATAG 59.121 57.143 0.00 0.00 0.00 2.23
36 37 1.490910 TCTCTCTCGGCTCTCACCATA 59.509 52.381 0.00 0.00 0.00 2.74
37 38 0.257328 TCTCTCTCGGCTCTCACCAT 59.743 55.000 0.00 0.00 0.00 3.55
38 39 0.038310 TTCTCTCTCGGCTCTCACCA 59.962 55.000 0.00 0.00 0.00 4.17
39 40 0.738389 CTTCTCTCTCGGCTCTCACC 59.262 60.000 0.00 0.00 0.00 4.02
40 41 1.132262 CACTTCTCTCTCGGCTCTCAC 59.868 57.143 0.00 0.00 0.00 3.51
41 42 1.458398 CACTTCTCTCTCGGCTCTCA 58.542 55.000 0.00 0.00 0.00 3.27
42 43 0.738389 CCACTTCTCTCTCGGCTCTC 59.262 60.000 0.00 0.00 0.00 3.20
43 44 1.319614 GCCACTTCTCTCTCGGCTCT 61.320 60.000 0.00 0.00 39.73 4.09
44 45 1.140804 GCCACTTCTCTCTCGGCTC 59.859 63.158 0.00 0.00 39.73 4.70
45 46 2.355193 GGCCACTTCTCTCTCGGCT 61.355 63.158 0.00 0.00 42.56 5.52
46 47 2.185608 GGCCACTTCTCTCTCGGC 59.814 66.667 0.00 0.00 42.21 5.54
47 48 2.492090 CGGCCACTTCTCTCTCGG 59.508 66.667 2.24 0.00 0.00 4.63
48 49 2.202676 GCGGCCACTTCTCTCTCG 60.203 66.667 2.24 0.00 0.00 4.04
49 50 2.202676 CGCGGCCACTTCTCTCTC 60.203 66.667 2.24 0.00 0.00 3.20
50 51 3.764466 CCGCGGCCACTTCTCTCT 61.764 66.667 14.67 0.00 0.00 3.10
69 70 3.064324 ATCGCCAAGGCTGCCAAC 61.064 61.111 22.65 5.83 39.32 3.77
70 71 3.063704 CATCGCCAAGGCTGCCAA 61.064 61.111 22.65 0.00 39.32 4.52
71 72 3.982316 CTCATCGCCAAGGCTGCCA 62.982 63.158 22.65 0.00 39.32 4.92
72 73 3.207669 CTCATCGCCAAGGCTGCC 61.208 66.667 11.65 11.65 39.32 4.85
73 74 2.437359 ACTCATCGCCAAGGCTGC 60.437 61.111 9.73 0.00 39.32 5.25
74 75 2.758089 GCACTCATCGCCAAGGCTG 61.758 63.158 9.73 1.66 39.32 4.85
75 76 2.437359 GCACTCATCGCCAAGGCT 60.437 61.111 9.73 0.00 39.32 4.58
76 77 3.869272 CGCACTCATCGCCAAGGC 61.869 66.667 0.00 0.00 37.85 4.35
77 78 3.197790 CCGCACTCATCGCCAAGG 61.198 66.667 0.00 0.00 0.00 3.61
78 79 3.869272 GCCGCACTCATCGCCAAG 61.869 66.667 0.00 0.00 0.00 3.61
102 103 4.570663 CCGCCCGGCTACTTCGAG 62.571 72.222 8.05 0.00 0.00 4.04
137 138 0.534427 GGTTTAGGGTATGGCTCCGC 60.534 60.000 0.00 0.00 0.00 5.54
138 139 0.108019 GGGTTTAGGGTATGGCTCCG 59.892 60.000 0.00 0.00 0.00 4.63
139 140 1.519498 AGGGTTTAGGGTATGGCTCC 58.481 55.000 0.00 0.00 0.00 4.70
140 141 2.638363 CCTAGGGTTTAGGGTATGGCTC 59.362 54.545 0.00 0.00 0.00 4.70
141 142 2.251872 TCCTAGGGTTTAGGGTATGGCT 59.748 50.000 9.46 0.00 35.45 4.75
142 143 2.371179 GTCCTAGGGTTTAGGGTATGGC 59.629 54.545 9.46 0.00 35.45 4.40
143 144 2.977580 GGTCCTAGGGTTTAGGGTATGG 59.022 54.545 9.46 0.00 35.45 2.74
144 145 2.631545 CGGTCCTAGGGTTTAGGGTATG 59.368 54.545 9.46 0.00 35.45 2.39
145 146 2.426855 CCGGTCCTAGGGTTTAGGGTAT 60.427 54.545 9.46 0.00 35.45 2.73
146 147 1.062962 CCGGTCCTAGGGTTTAGGGTA 60.063 57.143 9.46 0.00 35.45 3.69
147 148 0.325954 CCGGTCCTAGGGTTTAGGGT 60.326 60.000 9.46 0.00 35.45 4.34
148 149 0.325954 ACCGGTCCTAGGGTTTAGGG 60.326 60.000 9.46 4.92 35.45 3.53
149 150 2.459555 TACCGGTCCTAGGGTTTAGG 57.540 55.000 12.40 8.37 37.75 2.69
150 151 3.573110 CAGATACCGGTCCTAGGGTTTAG 59.427 52.174 12.40 0.00 37.75 1.85
151 152 3.205056 TCAGATACCGGTCCTAGGGTTTA 59.795 47.826 12.40 0.00 37.75 2.01
152 153 2.023695 TCAGATACCGGTCCTAGGGTTT 60.024 50.000 12.40 0.00 37.75 3.27
153 154 1.572415 TCAGATACCGGTCCTAGGGTT 59.428 52.381 12.40 0.00 37.75 4.11
154 155 1.229131 TCAGATACCGGTCCTAGGGT 58.771 55.000 12.40 0.83 40.35 4.34
155 156 2.606751 ATCAGATACCGGTCCTAGGG 57.393 55.000 12.40 0.00 0.00 3.53
156 157 3.354467 GGTATCAGATACCGGTCCTAGG 58.646 54.545 21.68 0.82 45.20 3.02
166 167 7.976135 ATTCAGCTTTCATGGTATCAGATAC 57.024 36.000 11.71 11.71 35.00 2.24
168 169 8.985315 TTTATTCAGCTTTCATGGTATCAGAT 57.015 30.769 0.00 0.00 0.00 2.90
169 170 8.677300 GTTTTATTCAGCTTTCATGGTATCAGA 58.323 33.333 0.00 0.00 0.00 3.27
170 171 8.680903 AGTTTTATTCAGCTTTCATGGTATCAG 58.319 33.333 0.00 0.00 0.00 2.90
171 172 8.461222 CAGTTTTATTCAGCTTTCATGGTATCA 58.539 33.333 0.00 0.00 0.00 2.15
172 173 8.462016 ACAGTTTTATTCAGCTTTCATGGTATC 58.538 33.333 0.00 0.00 0.00 2.24
173 174 8.353423 ACAGTTTTATTCAGCTTTCATGGTAT 57.647 30.769 0.00 0.00 0.00 2.73
174 175 7.759489 ACAGTTTTATTCAGCTTTCATGGTA 57.241 32.000 0.00 0.00 0.00 3.25
175 176 6.655078 ACAGTTTTATTCAGCTTTCATGGT 57.345 33.333 0.00 0.00 0.00 3.55
176 177 6.128742 GCAACAGTTTTATTCAGCTTTCATGG 60.129 38.462 0.00 0.00 0.00 3.66
177 178 6.643770 AGCAACAGTTTTATTCAGCTTTCATG 59.356 34.615 0.00 0.00 0.00 3.07
178 179 6.752168 AGCAACAGTTTTATTCAGCTTTCAT 58.248 32.000 0.00 0.00 0.00 2.57
179 180 6.147864 AGCAACAGTTTTATTCAGCTTTCA 57.852 33.333 0.00 0.00 0.00 2.69
180 181 8.748380 ATAAGCAACAGTTTTATTCAGCTTTC 57.252 30.769 9.36 0.00 40.95 2.62
181 182 8.981647 CAATAAGCAACAGTTTTATTCAGCTTT 58.018 29.630 9.36 0.00 40.95 3.51
182 183 8.359642 TCAATAAGCAACAGTTTTATTCAGCTT 58.640 29.630 9.12 9.12 42.87 3.74
183 184 7.885297 TCAATAAGCAACAGTTTTATTCAGCT 58.115 30.769 1.43 0.00 0.00 4.24
184 185 8.589629 CATCAATAAGCAACAGTTTTATTCAGC 58.410 33.333 1.43 0.00 0.00 4.26
185 186 9.844790 TCATCAATAAGCAACAGTTTTATTCAG 57.155 29.630 1.43 0.00 0.00 3.02
190 191 9.421806 CCAAATCATCAATAAGCAACAGTTTTA 57.578 29.630 0.00 0.00 0.00 1.52
191 192 7.933033 ACCAAATCATCAATAAGCAACAGTTTT 59.067 29.630 0.00 0.00 0.00 2.43
192 193 7.385752 CACCAAATCATCAATAAGCAACAGTTT 59.614 33.333 0.00 0.00 0.00 2.66
193 194 6.869913 CACCAAATCATCAATAAGCAACAGTT 59.130 34.615 0.00 0.00 0.00 3.16
194 195 6.392354 CACCAAATCATCAATAAGCAACAGT 58.608 36.000 0.00 0.00 0.00 3.55
195 196 5.290158 GCACCAAATCATCAATAAGCAACAG 59.710 40.000 0.00 0.00 0.00 3.16
196 197 5.170021 GCACCAAATCATCAATAAGCAACA 58.830 37.500 0.00 0.00 0.00 3.33
197 198 4.266029 CGCACCAAATCATCAATAAGCAAC 59.734 41.667 0.00 0.00 0.00 4.17
198 199 4.422840 CGCACCAAATCATCAATAAGCAA 58.577 39.130 0.00 0.00 0.00 3.91
199 200 3.181488 CCGCACCAAATCATCAATAAGCA 60.181 43.478 0.00 0.00 0.00 3.91
200 201 3.374745 CCGCACCAAATCATCAATAAGC 58.625 45.455 0.00 0.00 0.00 3.09
201 202 3.181488 TGCCGCACCAAATCATCAATAAG 60.181 43.478 0.00 0.00 0.00 1.73
202 203 2.757314 TGCCGCACCAAATCATCAATAA 59.243 40.909 0.00 0.00 0.00 1.40
203 204 2.373224 TGCCGCACCAAATCATCAATA 58.627 42.857 0.00 0.00 0.00 1.90
204 205 1.184431 TGCCGCACCAAATCATCAAT 58.816 45.000 0.00 0.00 0.00 2.57
205 206 1.184431 ATGCCGCACCAAATCATCAA 58.816 45.000 0.00 0.00 0.00 2.57
206 207 1.675483 GTATGCCGCACCAAATCATCA 59.325 47.619 0.00 0.00 0.00 3.07
207 208 1.675483 TGTATGCCGCACCAAATCATC 59.325 47.619 0.00 0.00 0.00 2.92
208 209 1.761449 TGTATGCCGCACCAAATCAT 58.239 45.000 0.00 0.00 0.00 2.45
209 210 1.472082 CTTGTATGCCGCACCAAATCA 59.528 47.619 0.00 0.00 0.00 2.57
210 211 1.742831 TCTTGTATGCCGCACCAAATC 59.257 47.619 0.00 0.00 0.00 2.17
211 212 1.745087 CTCTTGTATGCCGCACCAAAT 59.255 47.619 0.00 0.00 0.00 2.32
212 213 1.164411 CTCTTGTATGCCGCACCAAA 58.836 50.000 0.00 0.00 0.00 3.28
213 214 0.036164 ACTCTTGTATGCCGCACCAA 59.964 50.000 0.00 0.94 0.00 3.67
214 215 0.899019 TACTCTTGTATGCCGCACCA 59.101 50.000 0.00 0.00 0.00 4.17
215 216 2.240493 ATACTCTTGTATGCCGCACC 57.760 50.000 0.00 0.00 37.92 5.01
216 217 6.387465 TCTTATATACTCTTGTATGCCGCAC 58.613 40.000 0.00 0.00 39.49 5.34
217 218 6.350194 CCTCTTATATACTCTTGTATGCCGCA 60.350 42.308 0.00 0.00 39.49 5.69
218 219 6.037098 CCTCTTATATACTCTTGTATGCCGC 58.963 44.000 0.00 0.00 39.49 6.53
219 220 6.153000 ACCCTCTTATATACTCTTGTATGCCG 59.847 42.308 0.00 0.00 39.49 5.69
220 221 7.483580 ACCCTCTTATATACTCTTGTATGCC 57.516 40.000 0.00 0.00 39.49 4.40
221 222 9.021807 TGTACCCTCTTATATACTCTTGTATGC 57.978 37.037 0.00 0.00 39.49 3.14
225 226 8.702819 GGTTTGTACCCTCTTATATACTCTTGT 58.297 37.037 0.00 0.00 38.60 3.16
226 227 7.866393 CGGTTTGTACCCTCTTATATACTCTTG 59.134 40.741 0.00 0.00 41.75 3.02
227 228 7.781693 TCGGTTTGTACCCTCTTATATACTCTT 59.218 37.037 0.00 0.00 41.75 2.85
228 229 7.230309 GTCGGTTTGTACCCTCTTATATACTCT 59.770 40.741 0.00 0.00 41.75 3.24
229 230 7.230309 AGTCGGTTTGTACCCTCTTATATACTC 59.770 40.741 0.00 0.00 41.75 2.59
230 231 7.065504 AGTCGGTTTGTACCCTCTTATATACT 58.934 38.462 0.00 0.00 41.75 2.12
231 232 7.282332 AGTCGGTTTGTACCCTCTTATATAC 57.718 40.000 0.00 0.00 41.75 1.47
232 233 7.201938 CCAAGTCGGTTTGTACCCTCTTATATA 60.202 40.741 0.00 0.00 41.75 0.86
233 234 6.407752 CCAAGTCGGTTTGTACCCTCTTATAT 60.408 42.308 0.00 0.00 41.75 0.86
234 235 5.105228 CCAAGTCGGTTTGTACCCTCTTATA 60.105 44.000 0.00 0.00 41.75 0.98
235 236 4.323257 CCAAGTCGGTTTGTACCCTCTTAT 60.323 45.833 0.00 0.00 41.75 1.73
236 237 3.007182 CCAAGTCGGTTTGTACCCTCTTA 59.993 47.826 0.00 0.00 41.75 2.10
237 238 2.224450 CCAAGTCGGTTTGTACCCTCTT 60.224 50.000 0.00 0.00 41.75 2.85
238 239 1.346722 CCAAGTCGGTTTGTACCCTCT 59.653 52.381 0.00 0.00 41.75 3.69
239 240 1.609841 CCCAAGTCGGTTTGTACCCTC 60.610 57.143 0.00 0.00 41.75 4.30
240 241 0.399075 CCCAAGTCGGTTTGTACCCT 59.601 55.000 0.00 0.00 41.75 4.34
241 242 0.607217 CCCCAAGTCGGTTTGTACCC 60.607 60.000 0.00 0.00 41.75 3.69
242 243 0.109153 ACCCCAAGTCGGTTTGTACC 59.891 55.000 0.00 0.00 41.33 3.34
243 244 2.613725 CCTACCCCAAGTCGGTTTGTAC 60.614 54.545 0.00 0.00 34.66 2.90
244 245 1.624813 CCTACCCCAAGTCGGTTTGTA 59.375 52.381 0.00 0.00 34.66 2.41
245 246 0.399075 CCTACCCCAAGTCGGTTTGT 59.601 55.000 0.00 0.00 34.66 2.83
246 247 0.322187 CCCTACCCCAAGTCGGTTTG 60.322 60.000 0.00 0.00 34.66 2.93
247 248 1.494716 CCCCTACCCCAAGTCGGTTT 61.495 60.000 0.00 0.00 34.66 3.27
248 249 1.921857 CCCCTACCCCAAGTCGGTT 60.922 63.158 0.00 0.00 34.66 4.44
249 250 1.814292 TACCCCTACCCCAAGTCGGT 61.814 60.000 0.00 0.00 37.40 4.69
250 251 1.002017 TACCCCTACCCCAAGTCGG 59.998 63.158 0.00 0.00 0.00 4.79
251 252 0.615544 TGTACCCCTACCCCAAGTCG 60.616 60.000 0.00 0.00 0.00 4.18
252 253 1.660242 TTGTACCCCTACCCCAAGTC 58.340 55.000 0.00 0.00 0.00 3.01
253 254 2.108776 GTTTTGTACCCCTACCCCAAGT 59.891 50.000 0.00 0.00 0.00 3.16
254 255 2.377531 AGTTTTGTACCCCTACCCCAAG 59.622 50.000 0.00 0.00 0.00 3.61
255 256 2.108601 CAGTTTTGTACCCCTACCCCAA 59.891 50.000 0.00 0.00 0.00 4.12
256 257 1.706305 CAGTTTTGTACCCCTACCCCA 59.294 52.381 0.00 0.00 0.00 4.96
257 258 1.987368 TCAGTTTTGTACCCCTACCCC 59.013 52.381 0.00 0.00 0.00 4.95
258 259 2.641321 AGTCAGTTTTGTACCCCTACCC 59.359 50.000 0.00 0.00 0.00 3.69
259 260 4.070009 CAAGTCAGTTTTGTACCCCTACC 58.930 47.826 0.00 0.00 0.00 3.18
260 261 4.070009 CCAAGTCAGTTTTGTACCCCTAC 58.930 47.826 0.00 0.00 0.00 3.18
261 262 3.975312 TCCAAGTCAGTTTTGTACCCCTA 59.025 43.478 0.00 0.00 0.00 3.53
262 263 2.781174 TCCAAGTCAGTTTTGTACCCCT 59.219 45.455 0.00 0.00 0.00 4.79
263 264 2.882761 GTCCAAGTCAGTTTTGTACCCC 59.117 50.000 0.00 0.00 0.00 4.95
264 265 3.816994 AGTCCAAGTCAGTTTTGTACCC 58.183 45.455 0.00 0.00 0.00 3.69
265 266 5.850614 TCTAGTCCAAGTCAGTTTTGTACC 58.149 41.667 0.00 0.00 0.00 3.34
266 267 6.985059 ACTTCTAGTCCAAGTCAGTTTTGTAC 59.015 38.462 0.00 0.00 27.00 2.90
267 268 7.120923 ACTTCTAGTCCAAGTCAGTTTTGTA 57.879 36.000 0.00 0.00 27.00 2.41
268 269 5.990668 ACTTCTAGTCCAAGTCAGTTTTGT 58.009 37.500 0.00 0.00 27.00 2.83
269 270 5.175856 CGACTTCTAGTCCAAGTCAGTTTTG 59.824 44.000 18.00 2.79 46.99 2.44
270 271 5.163437 ACGACTTCTAGTCCAAGTCAGTTTT 60.163 40.000 18.00 0.57 46.99 2.43
271 272 4.341520 ACGACTTCTAGTCCAAGTCAGTTT 59.658 41.667 18.00 2.39 46.99 2.66
272 273 3.890147 ACGACTTCTAGTCCAAGTCAGTT 59.110 43.478 18.00 4.22 46.99 3.16
273 274 3.488363 ACGACTTCTAGTCCAAGTCAGT 58.512 45.455 18.00 14.31 46.99 3.41
274 275 5.821516 ATACGACTTCTAGTCCAAGTCAG 57.178 43.478 18.00 13.87 46.99 3.51
275 276 5.587844 GGTATACGACTTCTAGTCCAAGTCA 59.412 44.000 18.00 5.06 46.99 3.41
276 277 5.587844 TGGTATACGACTTCTAGTCCAAGTC 59.412 44.000 11.14 11.14 42.12 3.01
277 278 5.503927 TGGTATACGACTTCTAGTCCAAGT 58.496 41.667 0.00 0.00 42.12 3.16
278 279 6.636562 ATGGTATACGACTTCTAGTCCAAG 57.363 41.667 0.00 0.00 42.12 3.61
279 280 8.573885 CATTATGGTATACGACTTCTAGTCCAA 58.426 37.037 0.00 0.00 42.12 3.53
280 281 7.940688 TCATTATGGTATACGACTTCTAGTCCA 59.059 37.037 0.00 0.00 42.12 4.02
281 282 8.235905 GTCATTATGGTATACGACTTCTAGTCC 58.764 40.741 0.00 0.00 42.12 3.85
282 283 9.001542 AGTCATTATGGTATACGACTTCTAGTC 57.998 37.037 3.78 0.00 41.71 2.59
283 284 8.921353 AGTCATTATGGTATACGACTTCTAGT 57.079 34.615 3.78 0.00 29.68 2.57
286 287 8.921353 AGTAGTCATTATGGTATACGACTTCT 57.079 34.615 12.23 10.29 35.47 2.85
287 288 7.956403 CGAGTAGTCATTATGGTATACGACTTC 59.044 40.741 12.23 8.65 35.47 3.01
288 289 7.658982 TCGAGTAGTCATTATGGTATACGACTT 59.341 37.037 12.23 0.00 35.47 3.01
289 290 7.157347 TCGAGTAGTCATTATGGTATACGACT 58.843 38.462 11.82 11.82 37.48 4.18
290 291 7.356641 TCGAGTAGTCATTATGGTATACGAC 57.643 40.000 0.00 0.00 0.00 4.34
291 292 7.442062 TGTTCGAGTAGTCATTATGGTATACGA 59.558 37.037 0.00 0.00 0.00 3.43
292 293 7.578852 TGTTCGAGTAGTCATTATGGTATACG 58.421 38.462 0.00 0.00 0.00 3.06
293 294 9.343103 CATGTTCGAGTAGTCATTATGGTATAC 57.657 37.037 0.00 0.00 0.00 1.47
294 295 8.520351 CCATGTTCGAGTAGTCATTATGGTATA 58.480 37.037 0.00 0.00 0.00 1.47
295 296 7.232737 TCCATGTTCGAGTAGTCATTATGGTAT 59.767 37.037 14.67 0.00 35.31 2.73
296 297 6.548251 TCCATGTTCGAGTAGTCATTATGGTA 59.452 38.462 14.67 5.11 35.31 3.25
297 298 5.362717 TCCATGTTCGAGTAGTCATTATGGT 59.637 40.000 14.67 0.00 35.31 3.55
298 299 5.692204 GTCCATGTTCGAGTAGTCATTATGG 59.308 44.000 11.23 11.23 35.14 2.74
299 300 6.273071 TGTCCATGTTCGAGTAGTCATTATG 58.727 40.000 0.00 0.00 0.00 1.90
300 301 6.465439 TGTCCATGTTCGAGTAGTCATTAT 57.535 37.500 0.00 0.00 0.00 1.28
301 302 5.907866 TGTCCATGTTCGAGTAGTCATTA 57.092 39.130 0.00 0.00 0.00 1.90
302 303 4.801330 TGTCCATGTTCGAGTAGTCATT 57.199 40.909 0.00 0.00 0.00 2.57
303 304 4.801330 TTGTCCATGTTCGAGTAGTCAT 57.199 40.909 0.00 0.00 0.00 3.06
304 305 4.801330 ATTGTCCATGTTCGAGTAGTCA 57.199 40.909 0.00 0.00 0.00 3.41
305 306 4.929808 ACAATTGTCCATGTTCGAGTAGTC 59.070 41.667 4.92 0.00 0.00 2.59
306 307 4.894784 ACAATTGTCCATGTTCGAGTAGT 58.105 39.130 4.92 0.00 0.00 2.73
307 308 6.961359 TTACAATTGTCCATGTTCGAGTAG 57.039 37.500 15.85 0.00 0.00 2.57
308 309 7.731882 TTTTACAATTGTCCATGTTCGAGTA 57.268 32.000 15.85 0.00 0.00 2.59
309 310 6.627395 TTTTACAATTGTCCATGTTCGAGT 57.373 33.333 15.85 0.00 0.00 4.18
363 364 4.526650 ACGATTTATGTTTTCAAAGCCCCT 59.473 37.500 0.00 0.00 0.00 4.79
367 368 6.297410 CGCAAAACGATTTATGTTTTCAAAGC 59.703 34.615 1.18 2.21 45.11 3.51
634 639 0.955178 CACCTGCTCGTCCGATCTAT 59.045 55.000 0.00 0.00 0.00 1.98
664 669 4.249661 TCTTGTTAGCGTATGCATGTGAA 58.750 39.130 10.16 0.00 46.23 3.18
665 670 3.855858 TCTTGTTAGCGTATGCATGTGA 58.144 40.909 10.16 0.00 46.23 3.58
668 673 5.408204 TCATTCTTGTTAGCGTATGCATG 57.592 39.130 10.16 1.64 46.23 4.06
735 740 1.040339 GGTGATGGGTCTCTCGAGCT 61.040 60.000 7.81 0.00 37.77 4.09
775 780 1.740025 GCCTGTTGTCCTATTGTCAGC 59.260 52.381 0.00 0.00 0.00 4.26
791 796 1.206578 CTTTACAACCGTGCGCCTG 59.793 57.895 4.18 0.00 0.00 4.85
792 797 1.070105 TCTTTACAACCGTGCGCCT 59.930 52.632 4.18 0.00 0.00 5.52
795 800 0.433492 CTCGTCTTTACAACCGTGCG 59.567 55.000 0.00 0.00 0.00 5.34
800 805 3.041508 AGCTTCCTCGTCTTTACAACC 57.958 47.619 0.00 0.00 0.00 3.77
836 841 0.962356 AATTGCGTTCCTCCTGGCAG 60.962 55.000 7.75 7.75 36.66 4.85
843 848 3.673338 GCCTTTGTTTAATTGCGTTCCTC 59.327 43.478 0.00 0.00 0.00 3.71
850 855 7.699812 TCAACATTTTTGCCTTTGTTTAATTGC 59.300 29.630 0.00 0.00 30.23 3.56
874 881 0.241749 CGCTTGCCAAAGAAGCATCA 59.758 50.000 6.54 0.00 45.15 3.07
1137 1145 3.458163 TCCACCTCACCGATCGCC 61.458 66.667 10.32 0.00 0.00 5.54
1156 1164 1.197721 CCATGGCTCGTTCTTGTTCAC 59.802 52.381 0.00 0.00 0.00 3.18
1251 1259 0.616371 CCTGGTTGGTTCGTATCCCA 59.384 55.000 0.00 0.00 0.00 4.37
1299 1307 3.025262 GACGATCTCCTTGTCCTTACCT 58.975 50.000 0.00 0.00 32.75 3.08
1533 1541 6.312672 CCATGTTCATGATTTGACTACGTACA 59.687 38.462 13.51 0.00 32.84 2.90
1565 1575 5.048224 GCTAGGTGTGTACGTATGTATGGAT 60.048 44.000 0.00 0.00 32.11 3.41
1576 1586 3.129813 TGGTCAATAGCTAGGTGTGTACG 59.870 47.826 4.27 0.00 0.00 3.67
1620 1630 7.229306 CACATACTCCTGCCAACATACATAAAT 59.771 37.037 0.00 0.00 0.00 1.40
1724 1737 2.983592 CCCTGGTCGTTGTTGCCC 60.984 66.667 0.00 0.00 0.00 5.36
1753 1766 2.814336 GAGATCTTGTGGGTGGTTGTTC 59.186 50.000 0.00 0.00 0.00 3.18
1764 1777 4.298744 TGCTCATAGACGAGATCTTGTG 57.701 45.455 20.70 6.17 39.04 3.33
1774 1787 2.623416 TCTGTACCCATGCTCATAGACG 59.377 50.000 0.00 0.00 0.00 4.18
1778 1791 2.639347 CCCATCTGTACCCATGCTCATA 59.361 50.000 0.00 0.00 0.00 2.15
1935 1948 1.511850 TGCACTCTGTTGGAATCACG 58.488 50.000 0.00 0.00 0.00 4.35
1946 1959 0.450583 GATGTGGTGCATGCACTCTG 59.549 55.000 40.86 0.00 45.52 3.35
2013 2026 0.686789 TAGCACAAGAGAGGCAAGCA 59.313 50.000 0.00 0.00 0.00 3.91
2035 2048 4.137116 AGCCGATACACATACACACAAT 57.863 40.909 0.00 0.00 0.00 2.71
2084 2098 6.555315 AGTTTACAATGCAAATGTAGCTAGC 58.445 36.000 6.62 6.62 34.92 3.42
2126 2140 8.292448 CCATATAGCTAGGTTTAAAACATGCAG 58.708 37.037 18.25 6.55 0.00 4.41
2245 2268 1.153289 CTCTAGGTTGGCGCATGCT 60.153 57.895 17.13 0.00 42.25 3.79
2252 2275 0.542333 GGAAGTCCCTCTAGGTTGGC 59.458 60.000 0.00 0.00 36.75 4.52
2275 2298 9.623000 AAAGTGTAAGTAAGAGTTTATGTGGTT 57.377 29.630 0.00 0.00 0.00 3.67
2327 2350 9.915629 TGTGTGTGTGTTTTTCTAAAAATAAGT 57.084 25.926 4.09 0.00 39.75 2.24
2329 2352 9.692749 TGTGTGTGTGTGTTTTTCTAAAAATAA 57.307 25.926 4.09 0.00 39.75 1.40
2330 2353 9.130312 GTGTGTGTGTGTGTTTTTCTAAAAATA 57.870 29.630 4.09 0.00 39.75 1.40
2331 2354 7.653713 TGTGTGTGTGTGTGTTTTTCTAAAAAT 59.346 29.630 4.09 0.00 39.75 1.82
2332 2355 6.978659 TGTGTGTGTGTGTGTTTTTCTAAAAA 59.021 30.769 0.00 0.00 35.67 1.94
2333 2356 6.418226 GTGTGTGTGTGTGTGTTTTTCTAAAA 59.582 34.615 0.00 0.00 0.00 1.52
2334 2357 5.915758 GTGTGTGTGTGTGTGTTTTTCTAAA 59.084 36.000 0.00 0.00 0.00 1.85
2335 2358 5.008712 TGTGTGTGTGTGTGTGTTTTTCTAA 59.991 36.000 0.00 0.00 0.00 2.10
2336 2359 4.515567 TGTGTGTGTGTGTGTGTTTTTCTA 59.484 37.500 0.00 0.00 0.00 2.10
2337 2360 3.316588 TGTGTGTGTGTGTGTGTTTTTCT 59.683 39.130 0.00 0.00 0.00 2.52
2338 2361 3.633235 TGTGTGTGTGTGTGTGTTTTTC 58.367 40.909 0.00 0.00 0.00 2.29
2341 2745 2.556189 ACATGTGTGTGTGTGTGTGTTT 59.444 40.909 0.00 0.00 37.14 2.83
2343 2747 1.819928 ACATGTGTGTGTGTGTGTGT 58.180 45.000 0.00 0.00 37.14 3.72
2348 2752 4.511082 TCATCACTTACATGTGTGTGTGTG 59.489 41.667 23.14 21.63 40.72 3.82
2349 2753 4.702831 TCATCACTTACATGTGTGTGTGT 58.297 39.130 23.14 15.01 39.39 3.72
2408 2870 8.799367 CCATCATATTCTCATTGATTAAGGCAA 58.201 33.333 0.00 0.00 0.00 4.52
2413 2875 7.167535 TCGGCCATCATATTCTCATTGATTAA 58.832 34.615 2.24 0.00 0.00 1.40
2421 2883 3.055602 CCATCTCGGCCATCATATTCTCA 60.056 47.826 2.24 0.00 0.00 3.27
2429 2891 1.130777 TCATTCCATCTCGGCCATCA 58.869 50.000 2.24 0.00 33.14 3.07
2436 2898 4.095334 TGTTCTGCATTTCATTCCATCTCG 59.905 41.667 0.00 0.00 0.00 4.04
2507 2969 4.225942 AGACCTGCTTAGACCAATCATGAA 59.774 41.667 0.00 0.00 0.00 2.57
2526 2988 5.912955 CGTGACCTAAAAATTGTTTCAGACC 59.087 40.000 0.00 0.00 0.00 3.85
2543 3006 1.405821 GCTAGTACTGATGCGTGACCT 59.594 52.381 5.39 0.00 0.00 3.85
2559 3028 6.656693 CCATGAAACCCTCTATTTATGGCTAG 59.343 42.308 0.00 0.00 0.00 3.42
2636 3161 9.744468 GTTGTGTGGTTAGTGAGAAAATAAATT 57.256 29.630 0.00 0.00 0.00 1.82
2651 3176 4.819630 GTCTCCAATTCTGTTGTGTGGTTA 59.180 41.667 0.00 0.00 0.00 2.85
2662 3187 2.988010 TGATCCCGTCTCCAATTCTG 57.012 50.000 0.00 0.00 0.00 3.02
2672 3197 1.612463 ACCGCTAGTATTGATCCCGTC 59.388 52.381 0.00 0.00 0.00 4.79
2681 3206 0.756903 ATTCCGCCACCGCTAGTATT 59.243 50.000 0.00 0.00 0.00 1.89
2685 3210 2.736144 TATAATTCCGCCACCGCTAG 57.264 50.000 0.00 0.00 0.00 3.42
2686 3211 2.563620 TCATATAATTCCGCCACCGCTA 59.436 45.455 0.00 0.00 0.00 4.26
2687 3212 1.346395 TCATATAATTCCGCCACCGCT 59.654 47.619 0.00 0.00 0.00 5.52
2688 3213 1.803334 TCATATAATTCCGCCACCGC 58.197 50.000 0.00 0.00 0.00 5.68
2689 3214 2.603110 CGATCATATAATTCCGCCACCG 59.397 50.000 0.00 0.00 0.00 4.94
2690 3215 3.857052 TCGATCATATAATTCCGCCACC 58.143 45.455 0.00 0.00 0.00 4.61
2701 3226 2.234661 CCCAGCTTGGCTCGATCATATA 59.765 50.000 0.00 0.00 36.40 0.86
2702 3227 1.002888 CCCAGCTTGGCTCGATCATAT 59.997 52.381 0.00 0.00 36.40 1.78
2738 3263 1.889170 GCTCCTTTGTTTTCTCCTGGG 59.111 52.381 0.00 0.00 0.00 4.45
2760 3285 2.501261 AGGTTTTCGGCAGGTTAGTTC 58.499 47.619 0.00 0.00 0.00 3.01
2765 3290 1.739667 GCAAGGTTTTCGGCAGGTT 59.260 52.632 0.00 0.00 0.00 3.50
2767 3292 1.743321 TTGGCAAGGTTTTCGGCAGG 61.743 55.000 0.00 0.00 36.49 4.85
2781 3308 3.636300 AGTGCACAGAAAGTAATTTGGCA 59.364 39.130 21.04 0.00 0.00 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.