>input_sequence_68238
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----------------------------------------------ATGGCAGACCACCTTCAAGTTCAGCAGCAACAAC
AACA-GTTGGAGCTTCCACCGGGGTACAGGTTCCACCCTACTGATGAGGAGATCATCACCTCCTACCTTGCCCCTAAGAT
TCTCAACCCAGCGTTCGACGCCACGGCGATCGGTGAGGTGGACGTGAACAAGAACGAGCCATGGGAGCTTCCCAAGAAGG
CCAAGATGGGGGAGAACGAGTGGTACTTTTACTGCCAGAAGGACCGCAAGTACCCCACTGGGATACGAACCAACCAGGCC
ACGAAGGCCGGCTACTGGAAGACCACAGGTAAGGACAAGGAGATCGTCAATCCACATTGTACGTCCATGCTCATCGGCAT
GAAGAAGACATTGGTGTTCTACAAGGGCAGAGCTCCCAGCGGGGAGAAGACCAACTGGGTCATGCATGAGTACAGGCTCG
AGATCGGCAAGCAGTCAACAACCGGCCTGCCCACCGCCATCACAAATGCCGCTTCCATTAACGCGTCTTCCAAGGTATAT
ATTTAAACATAGAGTATGGTTGTACGTAGTCA--AATCATGAACATGGTCGTCCATCCATACATACGTACACACCTAGCT
ATTGACCATAATTTATTTGCACTGATTCAATTTATGTATGTTGGC---AGGAGTATGTGGTTTGCAGGATCTTCCATAAG
AACACTGGAAGTGGGCTGTCATCCATGGTGTCACATGAGGACGTTGGGACCAGGCCGGGCAACAACGACCAGGGCAACGG
CAGTGGAACAACCACCCACAAGATCTCGTCTATGAGCATGGGTACAGATGGGGCATGTTGA-------------------
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-------------------------------------------------------
>chr3D_1_TraesCS3D01G078500
TGCGGCGAGGATGGGTGCAGGGTAGTTTTGTGGAGCTATGGTGAGAGCCGAGAGAGAAGTGGCCGCGGCGTTGGCAGCCT
TGGCGATGAGTGCGGCCCGGCGCTCGAAGTAGCCGGGCGGCGGCGGCGGTGGCGTTGGCGGAGCCATACCCTAAACCCTA
GGACCGGTATCTGATACCATGAAAGCTGAATAAAACTGTTGCTTATTGATGATTTGGTGCGGCATACAAGAGTATATAAG
AGGGTACAAACCGACTTGGGGTAGGGGTACAAAACTGACTTGGACTAGAAGTCGTATACCATAATGACTACTCGAACATG
GACAATTGTAAAAAAAAAAAATTGTACCATCCATCCAGTGACCAGGGGCTTTGAAAACATAAATCGTTTTGCGTAAACAT
GCATCAGCTTCAGTATATGGTAATTTTTTTCTTCTAAAATATATAGTATGTGGTAAATACATAAGGGTGAAATGTATAGT
ACATATAGTTCACACATGATACATCTCAATTAAACGCCATATAAATTAGAACAATAGCAGGGCTACATATGCACACGCAG
CTAGTAGATACATACAAATGTGGGTGTCTATTTGCTTTACATAACAAAGCTAGGCGGCAACAGCAACAGAA----CATAT
AGATCGGACGAGCAGGTGGGTAGAGGACTTCACATGCATACGCTAACAAGAATGAAAACAAAACCAATTGTGCAATCTGG
CATGGCCATGGCCTAGAAAAGCTCGAGAGACCCATCACCTGTCACTACCAGGGTGAGGCGCTGACAATAGGACAACAGGC
GCACGGTTGTAAAGACGAGGAAGCTATCTCTATCCATCCACTGCCAGGAGGAACGCAATTAAACAAAGGC--AAAAATGT
TGATGCTTCTTTGGCAAGCGCCTTGCCAGTACACGCATTCACTCCTATTTAAGCACCTCCCCTCATATATCTAGCTCATT
AAATTCGTTCCATAGTTGCATACAGCGATCCCATAGAGCCTCCACCATGGCAGACCACCTTCAAGTTCAGCAGCAACAAC
AACA-GTTGGAGCTTCCACCGGGGTACAGGTTCCACCCTACTGATGAGGAGATCATCACCTCCTACCTTGCCCCTAAGAT
TCTCAACCCAGCGTTCGACGCCACGGCGATCGGTGAGGTGGACGTGAACAAGAACGAGCCATGGGAGCTTCCCAAGAAGG
CCAAGATGGGGGAGAACGAGTGGTACTTTTACTGCCAGAAGGACCGCAAGTACCCCACTGGGATACGAACCAACCAGGCC
ACGAAGGCCGGCTACTGGAAGACCACAGGTAAGGACAAGGAGATCGTCAATCCACATTGTACGTCCATGCTCATCGGCAT
GAAGAAGACATTGGTGTTCTACAAGGGCAGAGCTCCCAGCGGGGAGAAGACCAACTGGGTCATGCATGAGTACAGGCTCG
AGATCGGCAAGCAGTCAACAACCGGCCTGCCCACCGCCATCACAAATGCCGCTTCCATTAACGCGTCTTCCAAGGTATAT
ATTTAAACATAGAGTATGGTTGTACGTAGTCA--AATCATGAACATGGTCGTCCATCCATACATACGTACACACCTAGCT
ATTGACCATAATTTATTTGCACTGATTCAATTTATGTATGTTGGC---AGGAGTATGTGGTTTGCAGGATCTTCCATAAG
AACACTGGAAGTGGGCTGTCATCCATGGTGTCACATGAGGACGTTGGGACCAGGCCGGGCAACAACGACCAGGGCAACGG
CAGTGGAACAACCACCCACAAGATCTCGTCTATGAGCATGGGTACAGATGGGGCATGTTGAAGTACTGATAATCAGATGA
TCCAAGACAAGATATATATGTGTGTGTGCATTAATTAATCATCCATCAGAAGATTGGTCGATATATACCAACATCTATAT
TGGTTTGCAGCGCATTTTATTTTTCAGCGTGATTCCAACAGAGTGCATGCACCACATCAGAAGATCGGTCCATATATACC
AACATCTATATTGGTTGGCTCGTTTTGCTTGCCTCTCTTGTGCTAGTATTGTGTGTATGTGTATCGGCTTGTACATGCAC
CACATATC-GGTGTATAGCTAGCTACATTTGCATTGTAAACTTCCTAGGAGTGTACACCCTGCATGTTTTAAACCTAGCT
ATATGGAATATACTATTTTCTTAAATTATGAATGTTTG--------ACTAAATGTATTATCATGAATTTGATTACATATG
TTTA-TTTTATTTGGAAACAAATTTTGAGCATGCGCCAACCTAGAGGGACTTCCATCAACCACATAAACTCTTACTTACA
CTTTCAAAGTTTAACAAATGTATTGAATAACTTATTTTTAG---------------------------------------
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----------------------AAAAACACACACACACACAC--------------------------------------
----------------ATGTAAGTGATGAAATATCATTGATCTTTCGAAATGTATA----CTTTTTTAGTTGCCTTAATC
AATGAGAATATGATGGCCGAGATGGAATGAAATGCAGAACACATATCATTCTCTTATAATTATAACACGACAACCATATA
TATAGGATTTCATGATTGGTCTAAGCAGGTCTGAAACAATTT-TTAGGTCACGCA------TCAGTACTAGCCATA---A
ATAGAGGGTTTCATGGTTGAGCATAATGT---------------------------------------------------
--TATGGCCTAATTTTGGTTAGGAGAAACTAACGGAACAAAATTTATTTTCTCACTAACCACACAACAGAATTGGAGACG
GGATCAATACTAGCGGTGGCGGAATTATATGATCGAGCCAAGCTGGGCAGTGACATGTATAGCCCAGGAGAAAACAAAGG
AGCCGAACTAACCTGCCGAA--AACCTTGCCAAATTACTTTCTGTGCACTCTATC
>chr3A_338
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-----------------AAAATTGTACCATCCATTCAGTGACCGGGGACTATGAAAACATACGTCGTTTTGCGTAAACAT
GCAGGAGCTTCAGTATGTGGTAATTTTTTTCTTCTCAAAAATATAGTATGTGGTAAATACATAACGGTGAAATGTATAGT
ACATATAGTTGACACATGATACATCCCGATTAAACGCCATATAAATTAGAACAATAGCAGGGCTACATATGCACACGCAG
CTAATAGATACATACAAATGTGGGTGTCTATTTGCTTTACCTAACAAAGCTAGGCGGCAACAGCAACAGAA----CATGT
AGATCGGACGAGCAGGTGGGTAGAGGACCGCATATTCATACGCTAACAAGAATGAAAACAAAACCAATTGTGCAATCTGG
CATGACCATGGCCTAGAAAGGCTCGAGAGACCCGTCACCTGTCACTACCAGGGTGTAGCCCTGAAAATAGGACAAGTGAA
GCACAGTTGTAAAGACGAGGAAGCTATCTCTATCCATCCATTGCCAGTAGGAACACAATTAAACAAAGGCATAAAAATGT
CGATGCTTCTTTGGCAAGCGCCTTGCCAGTACACGCATTCACTCCTATTTAAGGACCTCCCCTCATATATCTAGCTCATT
AAATTCGTTCCATAGTT-CATACAGTGATCCTATAGAGCCTCTGCCATGGTAGACCACCTTCAAGTTCAGCAGCAACAAC
AACA-GTTGGAGCTTCCAATGGGGTTCAGGTTCCACCCTACTGATGAGGAGATCATCACCTCCTACCTTGCCCCTAAGAT
TCTCAACCCAGCATTCGACGCCACAGCGATCGGTGAGGTGGACCTGAACAAGAACGAGCCATGGGAACTTCCCAAGAAGG
CCAAGATGGGGGAGAACGAGTGGTACTTTTACTGCCAGAAGGACCGCAAGTACCCCACCGGAATACGAACCAACCGAGCC
ACAAAGGCTGGCTACTGGAAGACCACGGGTAAGGACAAGGAGATCGTCAATCCACATTGCACGTCCATGCTCATCGGCAT
GAAGAAGACATTGGTGTTCTACAAGGGCAGAGCTCCCAGTGGGGAGAAGACCAACTGGGTCATGCACGAGTACAGGCTCA
AGATCAACAAGCAGTCAACAACCAGCCTGCCCAGTGCCATAGGAAATGCTGCTTCTATTAACATGTCTTCCAAGG----T
ATTTAAACCTAGAGTATGGTAGTACGTAGTCA--AACCATGAACATGGTCGTCCGTCCATACACAAGTACATACCTAGCT
ATTGACCATAATTTGTTTGCACTGATTCAGTTTATGTATGTTGGC---AGGAGTATGTGGTTTGCAGGATCTTCCATAAG
AACGCTGGAAGTAGGCTTTCATCCATGGTGTCACATGAGG---------------------------------GCAACGG
TGGTGCAACACCCACCGACAAGATCTGGTCGATGAGCATGGGTACAGATGGGGCATGTTGAAGTATTGATAATCAGATGA
TCCAAGACAACATATATATGTGTGTGGGCATTAATTAGTCATCCATCAGAAGATCCATCGATATATACCAACATCTATAT
TGGTTTGCAGCGCATTTTATTTTTAGAGAGTT-----------TGCATGCACCACATCAGAAGATCGGTCGATATATACC
AACATCTATATTGGTTGGCTCGTTTGGCTTGCCGCTCTTGTGCTAGTGTTGTGTGTATGTGTATCGGCTTGTACATGCAC
CACATATC-GGTGTATACCTAGCTACATTTGCATTGTAAACTTCCTAGGAGTGTACACCATGCATGTTTTAATC----CT
ATATTGAATATACTAATTTGTTAAATTATAAATGTTTGACACTTTGACTAAATGTATTATCGTGAATTTGATTACATATG
TTTA-TT-TATTTGGAAACAAATACTGGGCATGCACCA------------------------------------------
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>chr3B_340
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-------------------AATTGTACCATCCATCCAGTGACCGGGGACATTGAAAACATAAATCGTTTTGCGTAAACAT
GCATTAGCTTCAGTATATGGTAATTTTTTTCTTCTAAAAAATATAGTATGTGGTAAATACATAAGGGTGAAATGTATAGT
ACATATAGTTCACACTTGATACATCTCAATTAAACGCCATATAAATTAGAACAATAGCAGGGCTACGTATGCACACGCAG
CTAGTAGATACATACAAATGTGGGTGTCTATTTGCTTTACATAACAAAGCTGGGCGGCAACAGCAACAGAACATGCATGT
AGATCGGACGAGAAGGTGGGTAGAGGACCGCATACGCATACGCTAACAAGAATGAAAACAAAACCAATTGTGCAATCTGG
CATGGCCATGGCCTAGAAAGGCTCGAGAGACCCGTCACCTGTCATCACCAGGGTGAGGCCCTGACAATAGGACAAGCAGA
GCACAGTTGTAAAGACGAGGAAGCTATCTCTATCCATCCATTGCCAGTAGGAACACAATTAAACAAAGGCACAAAAATGT
CGATGCTTCTTTGGCAAGCGCCTTGCCAGTACACGCTTTCACTCCTATTTAAGCGCCTCCCCTGATGTATCTAGCTCATT
AAATTCCTTCCATAGTTGCATACAGCGATCACATAGAGCCTCCGCCATGGCAGACCACCTTCAAGTTCAGCAGCAACAAC
AACATGTTAGAGCTTCCACCGGGGTTCAGGTTCCACCCTACTGATGAGGAGATCATCACCTCCTACCTTGCCCCTAAGAT
TCTCAACCCAGCGTTCAACGCCACAGCGATCGGTGAGGTGGACCTGAATAAGAACGAGCCATGGGAGCTTCCCAACAAGG
CCAAGATGGGGGAGAATGAGTGGTACTTTTACTGCCAGAAGGACCGCAAGTACCCCACCGGGATACGAACCAACCGGGCC
ACGAAGGCCGGCTACTGGAAGGCCACGGGTAAGGACAAAGAGATCGTCAACCCACATTGCATGTCCATGCTCATGGGCAT
GAAGAAGACATTGGTGTTCTACAAGGGCAGAGCTCCCAGCGGGGAGAAGACCAACTGGGTCATGCACGAGTACAGGCTCG
AGATCGGCAAGCAGTCAACATCCGGCCTGCCCACCACCATCGCAAATGCCGCTTCCAATAACGTGTCTTCTAAGG----T
ATTTAAACCTACAGTATGGTAGTACGTAGTCATGAATCATGAGCATGGTCGTCCGTCCATACATATGCACATACCTAGCT
ATTGACCATAATTTATTTGCACTGATTCAGTTTATGTACATTGGT---AGGAGTATGTGGTTTGCAGGATCTTCCATAAG
AACACTGGAAGTGGGGTGTCATCCATGGTGTCACATGAGGACGTTGGGACCGGTCCTGGCAACAACGACCAGGGCAACGG
CGGTGCAACAACCACCGACAAGATCTTGTCGATGAGCATGCGTACAGGTGGGGCATGTTGAAGTACTAATAATCAGATGA
TCCAAGAAAACATATATGTGTGTCTGTGCATTAATTAATCATCCATCAGAAGATCGGTCGATATATACCAACATCTATAT
TGGTTTGCACCGCATTTTATTTTTCAGTGTGATTCCAAGAGAGTTTGCATGCGC--------------------------
---------------TGGCTCATCTGGCTTGCCTCTCTTGTGCTAGTGTTGTGTGTATTTGTATCGGCTTGTACATGCAC
CACATAACTGGTGTATATCTAGCTACATTTGCATTGTAAACTTCCTAGGAGTGTACACCATGCATGTTTTAAAC----CT
ATATAGAATGTACTATTTTGTTAAATTGTGAATGC--------TTGACTGAATGCATTATCGTGAATTTGATTACATATG
TTTATTT-TATTTGGAAACAAATTTTGGGCATGCACCAACCTAGAGGGACTTCCATCCACCACATAAACTCTTACATACA
CTCTCAAAATTTAACAAATGTATTGGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNAAGACCACATGCACACACATCGTATTCCTATGAGAACCTCCGATAATTTGAGCCGACA
AGATGCGAACCCACCTATGTAAGTGATGAAATATCATTGATCTTTCGAAATGTATACTTTCTTAATTAGGTGCCGTAATC
AACGAGAATAAGATGGCTGAGATGGAATGAAATGCAAAAAACATATCATTCTCTTATTATGATAACATGACAAACATAAA
TATAGGATATCATGATTGGTCTAAGCATGTCTGAAACAATTTATTGGGTCACGCATTGACGTCAGTAATAGCCATAAATA
ATAGAGGGTTTCATGGTTGAGCATAATGTGTATGTTTTTCTTACAGTACAAACTTAGCAACAATATTGATCCATTTGCAT
GTTATGGCCTAATTTTGGTTAGCAGAAACTAATGGGACAACATTTATTTTCTCACAAACCACACAAAAGAATTGGACACG
GGATCGATAA-----GTGGCGGAAT--TATGATCGAGCCAAGCTGGGCAGTGACATGTATAGTCCAGGAGAAAACAAAGG
AGCCCAACTGATCTGCCGAACTAACCTAGCCAAATTACTTTTTGTGTTCTCTATC
>chr7B_983
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----------------------------TCCCAGAGAGCCTCCGCCATGGCAGACCACCTTCAAGTTCAGCGGCAACAAC
TAAA-GTTC------CCTCAGGGGTTCAGGTTTCACCCGACGGATGTGGAGATCATCACCTCCTACCTAGTCCCTAAAGT
GTTGAACAAAGCATTCGACCCCATAGCGATCGGGGAGGTGGACCTGAACAAATGTGAGCCGTGGGAACTCCCCGAGAAGG
CGAAAATGGGGGAGAAGGAGTGGTACTTCTTCTCCCAAAAGGACCGCAAGTACCCCACCGGTATACGGACTAACCGAGCC
ACGACTTCCGGCTACTGGAAGGCCACTGGAAAGGACAAGGAGATCTTCCACCATGTGACTACAAGT---CTCATCGGCAT
GAAGAAGACGTTGGTCTTCTACAAGGGTAGGGCGCCAAGGGGGGAGAAGACCAACTGGGTCATGCATGAGTATAGGCTCG
AGTGTGGAAAACAAGGAACACCTGGTCTACCCACCGACATCACCACCGCCACAGCCATTAATGCATCTTCCAAGG----T
ATTTAAACACATACTAGTA------GTACTCATGATTCATGAACACGTTCGTACGTA-------------ATAGCTAGCT
ACTGGACATAGTTGATTTGCACTGATTTAGTTTATGTATGTTGGTAGGAGGAGTATGTGGTTTGCAGGATATTCCATAAG
AGCACTGGA-----------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS--------------------------S---S--------------------------------
----S----------------------------------S----------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------S-
----------------------------SS--S-----------------------------------------------
-------------------S-------------S-------------------------S---------------SS--S
----S-----------------------------------S------S------S-------------------------
S-------------------------------------------------------------------------------
-------------------------------------------S------------------------------------
-------------------------S------------------------------------------------------
------------------------S------------------S------------------------------------
----------------------------------------------------------S----------------S----
--------------------------S-----------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------SSSS-
--------------------S---------------------------------S----------S-----S--------
-----------------------------S--------------------------------------------------
---------------------------------------------------S-S--S-----------------------
-S---S----------S---------S---S-------------------------------------------------
----------S-------------------------------------------S-------------------------
---------------------------S----------S-------------------------------S---------
-------------------------S---------------------S--------------------------------
-----------------S-----------------------------------------S--------------SSSS--
----S--------------S-----------------------------------------S------------------
-------S-------------------S------S----------------------S-----------------S----
--S-----S----------------S---SSSSSSSSSSSS---------------------------------------
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------------------------S-S----SS--------S--------------------------------------
---------------------------------------------------------------SS----S----S-----
--S-------S------S------------------S--S-----------------S--S------S-----S----S-
--------S------------------S-----------------S---------------------S------------
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----------------------S---------S--S----S--------------S----------S---------S---
-----S---SSSSSS----------SS-----------------------------------S-----------------
----S----S-S---------------S-------------S----SS-------
>forward_233
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-----------------------------------------------------TTGGTGCGGCATACAAGAGT-------
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>reverse_1959
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--------------------------------------CAGAGTGCATGCACCACATC----------------------
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-------------------------------------------------------
