Multiple sequence alignment - TraesCS3D01G075200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G075200 chr3D 100.000 2435 0 0 1 2435 36237371 36239805 0.000000e+00 4497.0
1 TraesCS3D01G075200 chr3D 89.064 1143 69 19 453 1580 36179643 36180744 0.000000e+00 1367.0
2 TraesCS3D01G075200 chr3D 86.640 247 28 4 1638 1881 506006113 506005869 3.990000e-68 268.0
3 TraesCS3D01G075200 chr3D 91.150 113 10 0 1930 2042 36180739 36180851 1.170000e-33 154.0
4 TraesCS3D01G075200 chr3D 89.247 93 10 0 292 384 134007623 134007715 1.530000e-22 117.0
5 TraesCS3D01G075200 chr3A 90.853 2263 135 24 199 2435 46843414 46845630 0.000000e+00 2966.0
6 TraesCS3D01G075200 chr3A 89.331 703 56 8 882 1580 46841281 46841968 0.000000e+00 865.0
7 TraesCS3D01G075200 chr3A 85.132 417 30 14 406 806 46840859 46841259 4.880000e-107 398.0
8 TraesCS3D01G075200 chr3A 80.827 266 37 8 1 258 7864560 7864819 1.910000e-46 196.0
9 TraesCS3D01G075200 chr3A 84.348 115 16 2 292 405 59815269 59815382 7.120000e-21 111.0
10 TraesCS3D01G075200 chr3B 88.112 2002 138 43 459 2395 59045707 59047673 0.000000e+00 2287.0
11 TraesCS3D01G075200 chr3B 88.000 100 12 0 292 391 32486886 32486985 4.250000e-23 119.0
12 TraesCS3D01G075200 chr3B 75.843 178 34 7 1 171 564627170 564626995 5.580000e-12 82.4
13 TraesCS3D01G075200 chr3B 85.507 69 4 3 412 474 59045618 59045686 1.560000e-07 67.6
14 TraesCS3D01G075200 chr1A 85.266 828 99 15 717 1537 300927895 300927084 0.000000e+00 832.0
15 TraesCS3D01G075200 chr1A 84.148 675 91 9 882 1550 428236149 428235485 7.340000e-180 640.0
16 TraesCS3D01G075200 chr1A 83.090 686 90 16 881 1550 428210638 428209963 3.460000e-168 601.0
17 TraesCS3D01G075200 chr1A 87.500 64 7 1 648 710 300931896 300931833 3.360000e-09 73.1
18 TraesCS3D01G075200 chr1D 83.857 669 84 13 882 1539 331283325 331282670 1.240000e-172 616.0
19 TraesCS3D01G075200 chr1D 83.016 683 94 14 881 1550 331197863 331197190 1.250000e-167 599.0
20 TraesCS3D01G075200 chr5A 82.911 316 42 8 1576 1883 362786094 362786405 8.580000e-70 274.0
21 TraesCS3D01G075200 chr5D 85.659 258 31 5 1625 1882 486244254 486244003 1.440000e-67 267.0
22 TraesCS3D01G075200 chr5D 84.821 112 16 1 295 406 526752610 526752500 7.120000e-21 111.0
23 TraesCS3D01G075200 chr4D 86.000 250 30 4 1638 1883 490401327 490401079 1.860000e-66 263.0
24 TraesCS3D01G075200 chr4D 84.956 113 15 2 292 404 99207504 99207614 1.980000e-21 113.0
25 TraesCS3D01G075200 chr5B 86.364 242 25 6 1642 1882 597291876 597291642 8.640000e-65 257.0
26 TraesCS3D01G075200 chr5B 76.357 258 47 7 1 258 492103992 492104235 2.540000e-25 126.0
27 TraesCS3D01G075200 chr5B 84.167 120 17 2 292 411 679748617 679748734 5.500000e-22 115.0
28 TraesCS3D01G075200 chr2B 82.935 293 43 7 1580 1867 744158979 744159269 8.640000e-65 257.0
29 TraesCS3D01G075200 chr6D 84.556 259 31 7 1628 1882 160464538 160464791 5.200000e-62 248.0
30 TraesCS3D01G075200 chr7B 84.400 250 32 6 1638 1882 44238427 44238180 3.130000e-59 239.0
31 TraesCS3D01G075200 chr4A 81.667 240 34 6 1 237 619944312 619944080 8.890000e-45 191.0
32 TraesCS3D01G075200 chr1B 77.567 263 42 11 1 260 196372443 196372195 2.520000e-30 143.0
33 TraesCS3D01G075200 chr7D 85.841 113 16 0 295 407 416238975 416238863 1.180000e-23 121.0
34 TraesCS3D01G075200 chr2D 80.556 144 27 1 291 434 160404793 160404651 2.560000e-20 110.0
35 TraesCS3D01G075200 chr2D 78.065 155 29 4 1 150 43511672 43511518 2.580000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G075200 chr3D 36237371 36239805 2434 False 4497.000000 4497 100.000000 1 2435 1 chr3D.!!$F1 2434
1 TraesCS3D01G075200 chr3D 36179643 36180851 1208 False 760.500000 1367 90.107000 453 2042 2 chr3D.!!$F3 1589
2 TraesCS3D01G075200 chr3A 46840859 46845630 4771 False 1409.666667 2966 88.438667 199 2435 3 chr3A.!!$F3 2236
3 TraesCS3D01G075200 chr3B 59045618 59047673 2055 False 1177.300000 2287 86.809500 412 2395 2 chr3B.!!$F2 1983
4 TraesCS3D01G075200 chr1A 428235485 428236149 664 True 640.000000 640 84.148000 882 1550 1 chr1A.!!$R2 668
5 TraesCS3D01G075200 chr1A 428209963 428210638 675 True 601.000000 601 83.090000 881 1550 1 chr1A.!!$R1 669
6 TraesCS3D01G075200 chr1A 300927084 300931896 4812 True 452.550000 832 86.383000 648 1537 2 chr1A.!!$R3 889
7 TraesCS3D01G075200 chr1D 331282670 331283325 655 True 616.000000 616 83.857000 882 1539 1 chr1D.!!$R2 657
8 TraesCS3D01G075200 chr1D 331197190 331197863 673 True 599.000000 599 83.016000 881 1550 1 chr1D.!!$R1 669

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
26 27 0.031314 ATCGAGCGATGACGATGCTT 59.969 50.0 4.37 0.0 45.38 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1893 8699 1.13428 CACCCGAGATCAAATGCTCCT 60.134 52.381 0.0 0.0 0.0 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.758783 TCATTGATCGAGCGATGACG 58.241 50.000 25.94 5.06 42.93 4.35
21 22 1.333619 TCATTGATCGAGCGATGACGA 59.666 47.619 25.94 7.95 42.66 4.20
23 24 1.758783 TTGATCGAGCGATGACGATG 58.241 50.000 10.42 0.00 46.71 3.84
24 25 0.661483 TGATCGAGCGATGACGATGC 60.661 55.000 10.42 0.00 46.71 3.91
25 26 0.386605 GATCGAGCGATGACGATGCT 60.387 55.000 10.42 0.00 46.71 3.79
26 27 0.031314 ATCGAGCGATGACGATGCTT 59.969 50.000 4.37 0.00 45.38 3.91
27 28 0.867329 TCGAGCGATGACGATGCTTG 60.867 55.000 0.00 0.00 39.49 4.01
28 29 1.142185 CGAGCGATGACGATGCTTGT 61.142 55.000 0.00 0.00 39.49 3.16
29 30 0.299895 GAGCGATGACGATGCTTGTG 59.700 55.000 0.00 0.00 39.49 3.33
30 31 1.297158 GCGATGACGATGCTTGTGC 60.297 57.895 0.00 0.00 42.66 4.57
31 32 1.699656 GCGATGACGATGCTTGTGCT 61.700 55.000 0.00 0.00 42.66 4.40
32 33 0.299895 CGATGACGATGCTTGTGCTC 59.700 55.000 0.00 0.00 42.66 4.26
33 34 1.649664 GATGACGATGCTTGTGCTCT 58.350 50.000 0.00 0.00 40.48 4.09
34 35 1.326852 GATGACGATGCTTGTGCTCTG 59.673 52.381 0.00 0.00 40.48 3.35
35 36 0.033920 TGACGATGCTTGTGCTCTGT 59.966 50.000 0.00 0.00 40.48 3.41
36 37 1.151668 GACGATGCTTGTGCTCTGTT 58.848 50.000 0.00 0.00 40.48 3.16
37 38 1.127582 GACGATGCTTGTGCTCTGTTC 59.872 52.381 0.00 0.00 40.48 3.18
38 39 0.445436 CGATGCTTGTGCTCTGTTCC 59.555 55.000 0.00 0.00 40.48 3.62
39 40 0.807496 GATGCTTGTGCTCTGTTCCC 59.193 55.000 0.00 0.00 40.48 3.97
40 41 0.403271 ATGCTTGTGCTCTGTTCCCT 59.597 50.000 0.00 0.00 40.48 4.20
41 42 0.183492 TGCTTGTGCTCTGTTCCCTT 59.817 50.000 0.00 0.00 40.48 3.95
42 43 0.877743 GCTTGTGCTCTGTTCCCTTC 59.122 55.000 0.00 0.00 36.03 3.46
43 44 1.544314 GCTTGTGCTCTGTTCCCTTCT 60.544 52.381 0.00 0.00 36.03 2.85
44 45 2.856222 CTTGTGCTCTGTTCCCTTCTT 58.144 47.619 0.00 0.00 0.00 2.52
45 46 2.260844 TGTGCTCTGTTCCCTTCTTG 57.739 50.000 0.00 0.00 0.00 3.02
46 47 1.202806 TGTGCTCTGTTCCCTTCTTGG 60.203 52.381 0.00 0.00 0.00 3.61
47 48 1.072331 GTGCTCTGTTCCCTTCTTGGA 59.928 52.381 0.00 0.00 38.35 3.53
48 49 1.349026 TGCTCTGTTCCCTTCTTGGAG 59.651 52.381 0.00 0.00 38.35 3.86
49 50 1.339535 GCTCTGTTCCCTTCTTGGAGG 60.340 57.143 0.00 0.00 38.35 4.30
50 51 0.693049 TCTGTTCCCTTCTTGGAGGC 59.307 55.000 0.00 0.00 38.35 4.70
51 52 0.401738 CTGTTCCCTTCTTGGAGGCA 59.598 55.000 0.00 0.00 38.35 4.75
52 53 1.005215 CTGTTCCCTTCTTGGAGGCAT 59.995 52.381 0.00 0.00 38.35 4.40
53 54 1.004745 TGTTCCCTTCTTGGAGGCATC 59.995 52.381 0.00 0.00 38.35 3.91
54 55 0.253044 TTCCCTTCTTGGAGGCATCG 59.747 55.000 0.00 0.00 38.35 3.84
55 56 0.909610 TCCCTTCTTGGAGGCATCGT 60.910 55.000 0.00 0.00 38.35 3.73
56 57 0.745845 CCCTTCTTGGAGGCATCGTG 60.746 60.000 0.00 0.00 38.35 4.35
57 58 0.036010 CCTTCTTGGAGGCATCGTGT 60.036 55.000 0.00 0.00 38.35 4.49
58 59 1.611673 CCTTCTTGGAGGCATCGTGTT 60.612 52.381 0.00 0.00 38.35 3.32
59 60 2.154462 CTTCTTGGAGGCATCGTGTTT 58.846 47.619 0.00 0.00 0.00 2.83
60 61 1.522668 TCTTGGAGGCATCGTGTTTG 58.477 50.000 0.00 0.00 0.00 2.93
61 62 0.523072 CTTGGAGGCATCGTGTTTGG 59.477 55.000 0.00 0.00 0.00 3.28
62 63 0.109532 TTGGAGGCATCGTGTTTGGA 59.890 50.000 0.00 0.00 0.00 3.53
63 64 0.321564 TGGAGGCATCGTGTTTGGAG 60.322 55.000 0.00 0.00 0.00 3.86
64 65 0.036388 GGAGGCATCGTGTTTGGAGA 60.036 55.000 0.00 0.00 0.00 3.71
65 66 1.610624 GGAGGCATCGTGTTTGGAGAA 60.611 52.381 0.00 0.00 0.00 2.87
66 67 2.151202 GAGGCATCGTGTTTGGAGAAA 58.849 47.619 0.00 0.00 0.00 2.52
67 68 1.880027 AGGCATCGTGTTTGGAGAAAC 59.120 47.619 0.00 0.00 41.72 2.78
68 69 1.068541 GGCATCGTGTTTGGAGAAACC 60.069 52.381 0.00 0.00 40.81 3.27
69 70 1.068541 GCATCGTGTTTGGAGAAACCC 60.069 52.381 0.00 0.00 40.81 4.11
70 71 1.539827 CATCGTGTTTGGAGAAACCCC 59.460 52.381 0.00 0.00 40.81 4.95
71 72 0.841289 TCGTGTTTGGAGAAACCCCT 59.159 50.000 0.00 0.00 40.81 4.79
72 73 1.213430 TCGTGTTTGGAGAAACCCCTT 59.787 47.619 0.00 0.00 40.81 3.95
73 74 2.028876 CGTGTTTGGAGAAACCCCTTT 58.971 47.619 0.00 0.00 40.81 3.11
74 75 2.223711 CGTGTTTGGAGAAACCCCTTTG 60.224 50.000 0.00 0.00 40.81 2.77
75 76 1.760029 TGTTTGGAGAAACCCCTTTGC 59.240 47.619 0.00 0.00 40.81 3.68
76 77 1.036707 TTTGGAGAAACCCCTTTGCG 58.963 50.000 0.00 0.00 38.00 4.85
77 78 0.825840 TTGGAGAAACCCCTTTGCGG 60.826 55.000 0.00 0.00 38.00 5.69
78 79 1.228459 GGAGAAACCCCTTTGCGGT 60.228 57.895 0.00 0.00 34.07 5.68
79 80 1.241990 GGAGAAACCCCTTTGCGGTC 61.242 60.000 0.00 0.00 31.48 4.79
80 81 1.228459 AGAAACCCCTTTGCGGTCC 60.228 57.895 0.00 0.00 31.48 4.46
81 82 2.596338 AAACCCCTTTGCGGTCCG 60.596 61.111 6.99 6.99 31.48 4.79
82 83 4.653888 AACCCCTTTGCGGTCCGG 62.654 66.667 14.38 0.00 31.48 5.14
88 89 3.599285 CTTTGCGGTCCGGGTGCTA 62.599 63.158 14.38 0.00 0.00 3.49
89 90 2.869503 CTTTGCGGTCCGGGTGCTAT 62.870 60.000 14.38 0.00 0.00 2.97
90 91 2.862674 TTTGCGGTCCGGGTGCTATC 62.863 60.000 14.38 0.00 0.00 2.08
91 92 3.537874 GCGGTCCGGGTGCTATCT 61.538 66.667 14.38 0.00 0.00 1.98
92 93 3.090219 GCGGTCCGGGTGCTATCTT 62.090 63.158 14.38 0.00 0.00 2.40
93 94 1.520666 CGGTCCGGGTGCTATCTTT 59.479 57.895 2.34 0.00 0.00 2.52
94 95 0.810031 CGGTCCGGGTGCTATCTTTG 60.810 60.000 2.34 0.00 0.00 2.77
95 96 0.463833 GGTCCGGGTGCTATCTTTGG 60.464 60.000 0.00 0.00 0.00 3.28
96 97 0.252197 GTCCGGGTGCTATCTTTGGT 59.748 55.000 0.00 0.00 0.00 3.67
97 98 0.251916 TCCGGGTGCTATCTTTGGTG 59.748 55.000 0.00 0.00 0.00 4.17
98 99 0.748005 CCGGGTGCTATCTTTGGTGG 60.748 60.000 0.00 0.00 0.00 4.61
99 100 0.035439 CGGGTGCTATCTTTGGTGGT 60.035 55.000 0.00 0.00 0.00 4.16
100 101 1.463674 GGGTGCTATCTTTGGTGGTG 58.536 55.000 0.00 0.00 0.00 4.17
101 102 1.463674 GGTGCTATCTTTGGTGGTGG 58.536 55.000 0.00 0.00 0.00 4.61
102 103 1.271926 GGTGCTATCTTTGGTGGTGGT 60.272 52.381 0.00 0.00 0.00 4.16
103 104 2.514803 GTGCTATCTTTGGTGGTGGTT 58.485 47.619 0.00 0.00 0.00 3.67
104 105 3.560453 GGTGCTATCTTTGGTGGTGGTTA 60.560 47.826 0.00 0.00 0.00 2.85
105 106 3.689649 GTGCTATCTTTGGTGGTGGTTAG 59.310 47.826 0.00 0.00 0.00 2.34
106 107 3.329520 TGCTATCTTTGGTGGTGGTTAGT 59.670 43.478 0.00 0.00 0.00 2.24
107 108 3.939592 GCTATCTTTGGTGGTGGTTAGTC 59.060 47.826 0.00 0.00 0.00 2.59
108 109 4.323562 GCTATCTTTGGTGGTGGTTAGTCT 60.324 45.833 0.00 0.00 0.00 3.24
109 110 5.105064 GCTATCTTTGGTGGTGGTTAGTCTA 60.105 44.000 0.00 0.00 0.00 2.59
110 111 4.612264 TCTTTGGTGGTGGTTAGTCTAC 57.388 45.455 0.00 0.00 0.00 2.59
111 112 4.228824 TCTTTGGTGGTGGTTAGTCTACT 58.771 43.478 0.00 0.00 0.00 2.57
112 113 4.039973 TCTTTGGTGGTGGTTAGTCTACTG 59.960 45.833 0.00 0.00 0.00 2.74
113 114 1.621814 TGGTGGTGGTTAGTCTACTGC 59.378 52.381 0.00 0.00 0.00 4.40
114 115 1.900486 GGTGGTGGTTAGTCTACTGCT 59.100 52.381 0.00 0.00 0.00 4.24
115 116 2.353803 GGTGGTGGTTAGTCTACTGCTG 60.354 54.545 0.00 0.00 0.00 4.41
116 117 1.275291 TGGTGGTTAGTCTACTGCTGC 59.725 52.381 0.00 0.00 0.00 5.25
117 118 1.630148 GTGGTTAGTCTACTGCTGCG 58.370 55.000 0.00 0.00 0.00 5.18
118 119 1.201647 GTGGTTAGTCTACTGCTGCGA 59.798 52.381 0.00 0.00 0.00 5.10
119 120 1.472878 TGGTTAGTCTACTGCTGCGAG 59.527 52.381 0.00 0.00 0.00 5.03
120 121 1.473278 GGTTAGTCTACTGCTGCGAGT 59.527 52.381 9.15 9.15 0.00 4.18
121 122 2.520979 GTTAGTCTACTGCTGCGAGTG 58.479 52.381 12.80 5.64 0.00 3.51
122 123 2.109425 TAGTCTACTGCTGCGAGTGA 57.891 50.000 12.80 7.29 0.00 3.41
123 124 1.468985 AGTCTACTGCTGCGAGTGAT 58.531 50.000 12.80 0.00 0.00 3.06
124 125 1.821753 AGTCTACTGCTGCGAGTGATT 59.178 47.619 12.80 5.19 0.00 2.57
125 126 1.923204 GTCTACTGCTGCGAGTGATTG 59.077 52.381 12.80 3.91 0.00 2.67
126 127 1.818674 TCTACTGCTGCGAGTGATTGA 59.181 47.619 12.80 5.55 0.00 2.57
127 128 2.428530 TCTACTGCTGCGAGTGATTGAT 59.571 45.455 12.80 0.00 0.00 2.57
128 129 1.649664 ACTGCTGCGAGTGATTGATC 58.350 50.000 4.36 0.00 0.00 2.92
129 130 1.066645 ACTGCTGCGAGTGATTGATCA 60.067 47.619 0.00 0.00 0.00 2.92
139 140 2.118313 TGATTGATCACTGTGGCAGG 57.882 50.000 8.11 0.00 35.51 4.85
140 141 1.340308 TGATTGATCACTGTGGCAGGG 60.340 52.381 8.11 0.00 36.00 4.45
141 142 0.682209 ATTGATCACTGTGGCAGGGC 60.682 55.000 8.11 0.00 34.42 5.19
142 143 1.782201 TTGATCACTGTGGCAGGGCT 61.782 55.000 8.11 0.00 34.42 5.19
143 144 1.001641 GATCACTGTGGCAGGGCTT 60.002 57.895 8.11 0.00 34.42 4.35
144 145 0.610232 GATCACTGTGGCAGGGCTTT 60.610 55.000 8.11 0.00 34.42 3.51
145 146 0.178953 ATCACTGTGGCAGGGCTTTT 60.179 50.000 8.11 0.00 34.42 2.27
146 147 0.396974 TCACTGTGGCAGGGCTTTTT 60.397 50.000 8.11 0.00 34.42 1.94
147 148 0.032540 CACTGTGGCAGGGCTTTTTC 59.967 55.000 0.00 0.00 35.51 2.29
148 149 1.115326 ACTGTGGCAGGGCTTTTTCC 61.115 55.000 0.00 0.00 35.51 3.13
149 150 0.829182 CTGTGGCAGGGCTTTTTCCT 60.829 55.000 0.00 0.00 34.39 3.36
150 151 0.398381 TGTGGCAGGGCTTTTTCCTT 60.398 50.000 0.00 0.00 31.06 3.36
151 152 0.758734 GTGGCAGGGCTTTTTCCTTT 59.241 50.000 0.00 0.00 31.06 3.11
152 153 1.140852 GTGGCAGGGCTTTTTCCTTTT 59.859 47.619 0.00 0.00 31.06 2.27
153 154 1.843206 TGGCAGGGCTTTTTCCTTTTT 59.157 42.857 0.00 0.00 31.06 1.94
154 155 2.158827 TGGCAGGGCTTTTTCCTTTTTC 60.159 45.455 0.00 0.00 31.06 2.29
155 156 2.104792 GGCAGGGCTTTTTCCTTTTTCT 59.895 45.455 0.00 0.00 31.06 2.52
156 157 3.433598 GGCAGGGCTTTTTCCTTTTTCTT 60.434 43.478 0.00 0.00 31.06 2.52
157 158 4.199310 GCAGGGCTTTTTCCTTTTTCTTT 58.801 39.130 0.00 0.00 31.06 2.52
158 159 4.640201 GCAGGGCTTTTTCCTTTTTCTTTT 59.360 37.500 0.00 0.00 31.06 2.27
159 160 5.220854 GCAGGGCTTTTTCCTTTTTCTTTTC 60.221 40.000 0.00 0.00 31.06 2.29
160 161 6.115446 CAGGGCTTTTTCCTTTTTCTTTTCT 58.885 36.000 0.00 0.00 31.06 2.52
161 162 6.258727 CAGGGCTTTTTCCTTTTTCTTTTCTC 59.741 38.462 0.00 0.00 31.06 2.87
162 163 6.156949 AGGGCTTTTTCCTTTTTCTTTTCTCT 59.843 34.615 0.00 0.00 0.00 3.10
163 164 6.480320 GGGCTTTTTCCTTTTTCTTTTCTCTC 59.520 38.462 0.00 0.00 0.00 3.20
164 165 7.268586 GGCTTTTTCCTTTTTCTTTTCTCTCT 58.731 34.615 0.00 0.00 0.00 3.10
165 166 7.436673 GGCTTTTTCCTTTTTCTTTTCTCTCTC 59.563 37.037 0.00 0.00 0.00 3.20
166 167 8.194104 GCTTTTTCCTTTTTCTTTTCTCTCTCT 58.806 33.333 0.00 0.00 0.00 3.10
171 172 9.860898 TTCCTTTTTCTTTTCTCTCTCTTTTTG 57.139 29.630 0.00 0.00 0.00 2.44
172 173 8.470002 TCCTTTTTCTTTTCTCTCTCTTTTTGG 58.530 33.333 0.00 0.00 0.00 3.28
173 174 7.223582 CCTTTTTCTTTTCTCTCTCTTTTTGGC 59.776 37.037 0.00 0.00 0.00 4.52
174 175 7.410120 TTTTCTTTTCTCTCTCTTTTTGGCT 57.590 32.000 0.00 0.00 0.00 4.75
175 176 6.382869 TTCTTTTCTCTCTCTTTTTGGCTG 57.617 37.500 0.00 0.00 0.00 4.85
176 177 5.440610 TCTTTTCTCTCTCTTTTTGGCTGT 58.559 37.500 0.00 0.00 0.00 4.40
177 178 6.591935 TCTTTTCTCTCTCTTTTTGGCTGTA 58.408 36.000 0.00 0.00 0.00 2.74
178 179 7.227156 TCTTTTCTCTCTCTTTTTGGCTGTAT 58.773 34.615 0.00 0.00 0.00 2.29
179 180 8.375506 TCTTTTCTCTCTCTTTTTGGCTGTATA 58.624 33.333 0.00 0.00 0.00 1.47
180 181 9.171877 CTTTTCTCTCTCTTTTTGGCTGTATAT 57.828 33.333 0.00 0.00 0.00 0.86
183 184 9.770097 TTCTCTCTCTTTTTGGCTGTATATATG 57.230 33.333 0.00 0.00 0.00 1.78
184 185 7.875041 TCTCTCTCTTTTTGGCTGTATATATGC 59.125 37.037 0.00 0.00 0.00 3.14
185 186 7.508687 TCTCTCTTTTTGGCTGTATATATGCA 58.491 34.615 3.35 3.35 0.00 3.96
186 187 8.159447 TCTCTCTTTTTGGCTGTATATATGCAT 58.841 33.333 3.79 3.79 0.00 3.96
187 188 8.327941 TCTCTTTTTGGCTGTATATATGCATC 57.672 34.615 0.19 0.05 0.00 3.91
188 189 7.391554 TCTCTTTTTGGCTGTATATATGCATCC 59.608 37.037 14.67 14.67 30.69 3.51
189 190 7.233632 TCTTTTTGGCTGTATATATGCATCCT 58.766 34.615 20.07 0.00 31.24 3.24
190 191 7.391554 TCTTTTTGGCTGTATATATGCATCCTC 59.608 37.037 20.07 5.86 31.24 3.71
191 192 5.760484 TTGGCTGTATATATGCATCCTCA 57.240 39.130 20.07 8.11 31.24 3.86
192 193 5.760484 TGGCTGTATATATGCATCCTCAA 57.240 39.130 20.07 2.66 31.24 3.02
193 194 6.317663 TGGCTGTATATATGCATCCTCAAT 57.682 37.500 20.07 0.00 31.24 2.57
194 195 6.351711 TGGCTGTATATATGCATCCTCAATC 58.648 40.000 20.07 0.00 31.24 2.67
195 196 6.157471 TGGCTGTATATATGCATCCTCAATCT 59.843 38.462 20.07 0.00 31.24 2.40
196 197 7.052873 GGCTGTATATATGCATCCTCAATCTT 58.947 38.462 14.36 0.00 0.00 2.40
197 198 7.226325 GGCTGTATATATGCATCCTCAATCTTC 59.774 40.741 14.36 0.00 0.00 2.87
198 199 7.767659 GCTGTATATATGCATCCTCAATCTTCA 59.232 37.037 0.19 0.00 0.00 3.02
199 200 9.315525 CTGTATATATGCATCCTCAATCTTCAG 57.684 37.037 0.19 0.00 0.00 3.02
200 201 8.819845 TGTATATATGCATCCTCAATCTTCAGT 58.180 33.333 0.19 0.00 0.00 3.41
201 202 9.664332 GTATATATGCATCCTCAATCTTCAGTT 57.336 33.333 0.19 0.00 0.00 3.16
202 203 6.879276 ATATGCATCCTCAATCTTCAGTTG 57.121 37.500 0.19 0.00 0.00 3.16
203 204 3.349927 TGCATCCTCAATCTTCAGTTGG 58.650 45.455 0.00 0.00 0.00 3.77
204 205 3.245016 TGCATCCTCAATCTTCAGTTGGT 60.245 43.478 0.00 0.00 0.00 3.67
205 206 3.376546 GCATCCTCAATCTTCAGTTGGTC 59.623 47.826 0.00 0.00 0.00 4.02
206 207 4.582869 CATCCTCAATCTTCAGTTGGTCA 58.417 43.478 0.00 0.00 0.00 4.02
207 208 4.916041 TCCTCAATCTTCAGTTGGTCAT 57.084 40.909 0.00 0.00 0.00 3.06
208 209 5.246981 TCCTCAATCTTCAGTTGGTCATT 57.753 39.130 0.00 0.00 0.00 2.57
209 210 5.634118 TCCTCAATCTTCAGTTGGTCATTT 58.366 37.500 0.00 0.00 0.00 2.32
210 211 6.070656 TCCTCAATCTTCAGTTGGTCATTTT 58.929 36.000 0.00 0.00 0.00 1.82
211 212 6.016024 TCCTCAATCTTCAGTTGGTCATTTTG 60.016 38.462 0.00 0.00 0.00 2.44
212 213 6.239120 CCTCAATCTTCAGTTGGTCATTTTGT 60.239 38.462 0.00 0.00 0.00 2.83
213 214 6.738114 TCAATCTTCAGTTGGTCATTTTGTC 58.262 36.000 0.00 0.00 0.00 3.18
214 215 4.811555 TCTTCAGTTGGTCATTTTGTCG 57.188 40.909 0.00 0.00 0.00 4.35
215 216 3.563808 TCTTCAGTTGGTCATTTTGTCGG 59.436 43.478 0.00 0.00 0.00 4.79
216 217 2.925724 TCAGTTGGTCATTTTGTCGGT 58.074 42.857 0.00 0.00 0.00 4.69
217 218 2.616376 TCAGTTGGTCATTTTGTCGGTG 59.384 45.455 0.00 0.00 0.00 4.94
218 219 1.336755 AGTTGGTCATTTTGTCGGTGC 59.663 47.619 0.00 0.00 0.00 5.01
219 220 1.066303 GTTGGTCATTTTGTCGGTGCA 59.934 47.619 0.00 0.00 0.00 4.57
220 221 0.950836 TGGTCATTTTGTCGGTGCAG 59.049 50.000 0.00 0.00 0.00 4.41
221 222 1.234821 GGTCATTTTGTCGGTGCAGA 58.765 50.000 0.00 0.00 0.00 4.26
222 223 1.197721 GGTCATTTTGTCGGTGCAGAG 59.802 52.381 0.00 0.00 0.00 3.35
223 224 1.197721 GTCATTTTGTCGGTGCAGAGG 59.802 52.381 0.00 0.00 0.00 3.69
224 225 0.109597 CATTTTGTCGGTGCAGAGGC 60.110 55.000 0.00 0.00 41.68 4.70
225 226 0.250901 ATTTTGTCGGTGCAGAGGCT 60.251 50.000 0.00 0.00 41.91 4.58
226 227 1.165907 TTTTGTCGGTGCAGAGGCTG 61.166 55.000 0.00 0.00 41.91 4.85
227 228 3.535629 TTGTCGGTGCAGAGGCTGG 62.536 63.158 0.00 0.00 41.91 4.85
228 229 4.767255 GTCGGTGCAGAGGCTGGG 62.767 72.222 0.00 0.00 41.91 4.45
231 232 3.958860 GGTGCAGAGGCTGGGTGT 61.959 66.667 0.00 0.00 41.91 4.16
232 233 2.359230 GTGCAGAGGCTGGGTGTC 60.359 66.667 0.00 0.00 41.91 3.67
233 234 2.848679 TGCAGAGGCTGGGTGTCA 60.849 61.111 0.00 0.00 41.91 3.58
234 235 2.226315 TGCAGAGGCTGGGTGTCAT 61.226 57.895 0.00 0.00 41.91 3.06
235 236 1.001641 GCAGAGGCTGGGTGTCATT 60.002 57.895 0.00 0.00 36.96 2.57
236 237 0.253044 GCAGAGGCTGGGTGTCATTA 59.747 55.000 0.00 0.00 36.96 1.90
237 238 1.745141 GCAGAGGCTGGGTGTCATTAG 60.745 57.143 0.00 0.00 36.96 1.73
238 239 1.556911 CAGAGGCTGGGTGTCATTAGT 59.443 52.381 0.00 0.00 0.00 2.24
239 240 2.766263 CAGAGGCTGGGTGTCATTAGTA 59.234 50.000 0.00 0.00 0.00 1.82
240 241 3.389329 CAGAGGCTGGGTGTCATTAGTAT 59.611 47.826 0.00 0.00 0.00 2.12
241 242 3.643792 AGAGGCTGGGTGTCATTAGTATC 59.356 47.826 0.00 0.00 0.00 2.24
242 243 3.643792 GAGGCTGGGTGTCATTAGTATCT 59.356 47.826 0.00 0.00 0.00 1.98
243 244 4.040755 AGGCTGGGTGTCATTAGTATCTT 58.959 43.478 0.00 0.00 0.00 2.40
244 245 4.101741 AGGCTGGGTGTCATTAGTATCTTC 59.898 45.833 0.00 0.00 0.00 2.87
245 246 4.141711 GGCTGGGTGTCATTAGTATCTTCA 60.142 45.833 0.00 0.00 0.00 3.02
246 247 4.811557 GCTGGGTGTCATTAGTATCTTCAC 59.188 45.833 0.00 0.00 0.00 3.18
247 248 5.006153 TGGGTGTCATTAGTATCTTCACG 57.994 43.478 0.00 0.00 0.00 4.35
248 249 4.707934 TGGGTGTCATTAGTATCTTCACGA 59.292 41.667 0.00 0.00 0.00 4.35
249 250 5.362717 TGGGTGTCATTAGTATCTTCACGAT 59.637 40.000 0.00 0.00 36.11 3.73
250 251 6.548251 TGGGTGTCATTAGTATCTTCACGATA 59.452 38.462 0.00 0.00 33.48 2.92
251 252 7.232737 TGGGTGTCATTAGTATCTTCACGATAT 59.767 37.037 0.00 0.00 36.99 1.63
252 253 8.088981 GGGTGTCATTAGTATCTTCACGATATT 58.911 37.037 0.00 0.00 36.99 1.28
279 280 6.737254 ATTTGTCGAGAAAAATATGTCGGT 57.263 33.333 12.11 0.00 33.21 4.69
280 281 6.548441 TTTGTCGAGAAAAATATGTCGGTT 57.452 33.333 5.09 0.00 33.21 4.44
281 282 6.548441 TTGTCGAGAAAAATATGTCGGTTT 57.452 33.333 0.00 0.00 33.21 3.27
282 283 5.922546 TGTCGAGAAAAATATGTCGGTTTG 58.077 37.500 0.00 0.00 33.21 2.93
283 284 4.786575 GTCGAGAAAAATATGTCGGTTTGC 59.213 41.667 0.00 0.00 33.21 3.68
284 285 4.095610 CGAGAAAAATATGTCGGTTTGCC 58.904 43.478 0.00 0.00 0.00 4.52
285 286 4.142687 CGAGAAAAATATGTCGGTTTGCCT 60.143 41.667 0.00 0.00 0.00 4.75
286 287 5.064198 CGAGAAAAATATGTCGGTTTGCCTA 59.936 40.000 0.00 0.00 0.00 3.93
287 288 6.238374 CGAGAAAAATATGTCGGTTTGCCTAT 60.238 38.462 0.00 0.00 0.00 2.57
288 289 7.042321 CGAGAAAAATATGTCGGTTTGCCTATA 60.042 37.037 0.00 0.00 0.00 1.31
289 290 8.691661 AGAAAAATATGTCGGTTTGCCTATAT 57.308 30.769 0.00 0.00 0.00 0.86
290 291 9.131791 AGAAAAATATGTCGGTTTGCCTATATT 57.868 29.630 0.00 0.00 31.20 1.28
291 292 9.744468 GAAAAATATGTCGGTTTGCCTATATTT 57.256 29.630 0.00 0.00 36.33 1.40
298 299 8.597662 TGTCGGTTTGCCTATATTTTATAGTC 57.402 34.615 1.95 0.00 0.00 2.59
299 300 8.205512 TGTCGGTTTGCCTATATTTTATAGTCA 58.794 33.333 1.95 0.00 0.00 3.41
300 301 9.216117 GTCGGTTTGCCTATATTTTATAGTCAT 57.784 33.333 1.95 0.00 0.00 3.06
301 302 9.431887 TCGGTTTGCCTATATTTTATAGTCATC 57.568 33.333 1.95 0.00 0.00 2.92
302 303 8.380644 CGGTTTGCCTATATTTTATAGTCATCG 58.619 37.037 1.95 0.00 0.00 3.84
303 304 9.216117 GGTTTGCCTATATTTTATAGTCATCGT 57.784 33.333 1.95 0.00 0.00 3.73
307 308 9.214957 TGCCTATATTTTATAGTCATCGTTTGG 57.785 33.333 1.95 0.00 0.00 3.28
308 309 9.216117 GCCTATATTTTATAGTCATCGTTTGGT 57.784 33.333 1.95 0.00 0.00 3.67
311 312 8.974060 ATATTTTATAGTCATCGTTTGGTGGT 57.026 30.769 0.00 0.00 0.00 4.16
312 313 6.730960 TTTTATAGTCATCGTTTGGTGGTC 57.269 37.500 0.00 0.00 0.00 4.02
313 314 2.357327 TAGTCATCGTTTGGTGGTCG 57.643 50.000 0.00 0.00 0.00 4.79
314 315 0.677288 AGTCATCGTTTGGTGGTCGA 59.323 50.000 0.00 0.00 37.96 4.20
315 316 0.788391 GTCATCGTTTGGTGGTCGAC 59.212 55.000 7.13 7.13 36.46 4.20
316 317 0.665068 TCATCGTTTGGTGGTCGACG 60.665 55.000 9.92 0.00 36.46 5.12
317 318 1.373748 ATCGTTTGGTGGTCGACGG 60.374 57.895 9.92 0.00 36.46 4.79
318 319 1.808531 ATCGTTTGGTGGTCGACGGA 61.809 55.000 9.92 0.00 36.46 4.69
319 320 1.373748 CGTTTGGTGGTCGACGGAT 60.374 57.895 9.92 0.00 32.29 4.18
320 321 0.947180 CGTTTGGTGGTCGACGGATT 60.947 55.000 9.92 0.00 32.29 3.01
321 322 1.232119 GTTTGGTGGTCGACGGATTT 58.768 50.000 9.92 0.00 0.00 2.17
322 323 2.415776 GTTTGGTGGTCGACGGATTTA 58.584 47.619 9.92 0.00 0.00 1.40
323 324 2.373540 TTGGTGGTCGACGGATTTAG 57.626 50.000 9.92 0.00 0.00 1.85
324 325 1.548081 TGGTGGTCGACGGATTTAGA 58.452 50.000 9.92 0.00 0.00 2.10
325 326 2.104967 TGGTGGTCGACGGATTTAGAT 58.895 47.619 9.92 0.00 0.00 1.98
326 327 2.159156 TGGTGGTCGACGGATTTAGATG 60.159 50.000 9.92 0.00 0.00 2.90
327 328 2.159142 GGTGGTCGACGGATTTAGATGT 60.159 50.000 9.92 0.00 0.00 3.06
328 329 3.067180 GGTGGTCGACGGATTTAGATGTA 59.933 47.826 9.92 0.00 0.00 2.29
329 330 4.440525 GGTGGTCGACGGATTTAGATGTAA 60.441 45.833 9.92 0.00 0.00 2.41
330 331 5.287226 GTGGTCGACGGATTTAGATGTAAT 58.713 41.667 9.92 0.00 0.00 1.89
331 332 5.751990 GTGGTCGACGGATTTAGATGTAATT 59.248 40.000 9.92 0.00 0.00 1.40
332 333 6.257193 GTGGTCGACGGATTTAGATGTAATTT 59.743 38.462 9.92 0.00 0.00 1.82
333 334 6.819649 TGGTCGACGGATTTAGATGTAATTTT 59.180 34.615 9.92 0.00 0.00 1.82
334 335 7.334921 TGGTCGACGGATTTAGATGTAATTTTT 59.665 33.333 9.92 0.00 0.00 1.94
335 336 8.819974 GGTCGACGGATTTAGATGTAATTTTTA 58.180 33.333 9.92 0.00 0.00 1.52
357 358 9.834628 TTTTATTATTTCTGATGTTCGTTGGAC 57.165 29.630 0.00 0.00 0.00 4.02
358 359 8.786826 TTATTATTTCTGATGTTCGTTGGACT 57.213 30.769 0.00 0.00 0.00 3.85
359 360 9.878667 TTATTATTTCTGATGTTCGTTGGACTA 57.121 29.630 0.00 0.00 0.00 2.59
360 361 7.591006 TTATTTCTGATGTTCGTTGGACTAC 57.409 36.000 0.00 0.00 0.00 2.73
361 362 3.587797 TCTGATGTTCGTTGGACTACC 57.412 47.619 0.00 0.00 0.00 3.18
362 363 2.894765 TCTGATGTTCGTTGGACTACCA 59.105 45.455 0.00 0.00 45.34 3.25
363 364 3.513912 TCTGATGTTCGTTGGACTACCAT 59.486 43.478 0.00 0.00 46.34 3.55
364 365 4.707934 TCTGATGTTCGTTGGACTACCATA 59.292 41.667 0.00 0.00 46.34 2.74
365 366 5.186215 TCTGATGTTCGTTGGACTACCATAA 59.814 40.000 0.00 0.00 46.34 1.90
366 367 5.984725 TGATGTTCGTTGGACTACCATAAT 58.015 37.500 0.00 0.00 46.34 1.28
367 368 6.411376 TGATGTTCGTTGGACTACCATAATT 58.589 36.000 0.00 0.00 46.34 1.40
368 369 7.557724 TGATGTTCGTTGGACTACCATAATTA 58.442 34.615 0.00 0.00 46.34 1.40
369 370 8.041919 TGATGTTCGTTGGACTACCATAATTAA 58.958 33.333 0.00 0.00 46.34 1.40
370 371 8.795842 ATGTTCGTTGGACTACCATAATTAAA 57.204 30.769 0.00 0.00 46.34 1.52
371 372 8.259049 TGTTCGTTGGACTACCATAATTAAAG 57.741 34.615 0.00 0.00 46.34 1.85
372 373 8.095792 TGTTCGTTGGACTACCATAATTAAAGA 58.904 33.333 0.00 0.00 46.34 2.52
373 374 9.106070 GTTCGTTGGACTACCATAATTAAAGAT 57.894 33.333 0.00 0.00 46.34 2.40
374 375 8.657074 TCGTTGGACTACCATAATTAAAGATG 57.343 34.615 0.00 0.00 46.34 2.90
375 376 8.479689 TCGTTGGACTACCATAATTAAAGATGA 58.520 33.333 0.00 0.00 46.34 2.92
376 377 9.104965 CGTTGGACTACCATAATTAAAGATGAA 57.895 33.333 0.00 0.00 46.34 2.57
396 397 9.618890 AGATGAATAGATCGAAAATTTTCCAGA 57.381 29.630 22.15 15.74 33.68 3.86
427 428 3.081804 CCTAAACAAAGTAGGTGGGCTG 58.918 50.000 0.00 0.00 34.50 4.85
456 460 2.474032 GCGAATCGACAACAAAGTAGCC 60.474 50.000 6.91 0.00 0.00 3.93
457 461 2.993899 CGAATCGACAACAAAGTAGCCT 59.006 45.455 0.00 0.00 0.00 4.58
475 518 5.635417 AGCCTAGCTTGAAATGTTTTCTC 57.365 39.130 0.00 0.00 33.89 2.87
507 550 5.538118 TCAATCAACTCTGACACGTATTGT 58.462 37.500 0.00 0.00 43.10 2.71
511 554 7.956420 ATCAACTCTGACACGTATTGTTTAA 57.044 32.000 0.00 0.00 39.17 1.52
523 566 9.777575 ACACGTATTGTTTAAAATACTATTGGC 57.222 29.630 7.93 0.00 39.74 4.52
539 582 0.179032 TGGCTCAAAGCGAACTTCCA 60.179 50.000 0.00 0.00 43.62 3.53
545 588 4.670221 GCTCAAAGCGAACTTCCATAAGTG 60.670 45.833 0.00 0.00 45.37 3.16
557 600 7.195374 ACTTCCATAAGTGGCATTCTACTAA 57.805 36.000 0.00 0.00 44.40 2.24
563 606 4.078639 AGTGGCATTCTACTAATGGAGC 57.921 45.455 0.00 0.00 0.00 4.70
564 607 3.455910 AGTGGCATTCTACTAATGGAGCA 59.544 43.478 0.00 0.00 0.00 4.26
575 618 7.265673 TCTACTAATGGAGCACACTTGATTAC 58.734 38.462 0.00 0.00 0.00 1.89
577 620 5.643777 ACTAATGGAGCACACTTGATTACAC 59.356 40.000 0.00 0.00 0.00 2.90
596 639 5.000012 ACACTAACAGAGCTGCATACTAC 58.000 43.478 1.02 0.00 0.00 2.73
684 735 2.031163 GGCGACCTGCTCAGTTGT 59.969 61.111 0.00 0.00 45.43 3.32
708 759 0.466124 GGCTCTGGAATTACCGCTCT 59.534 55.000 0.00 0.00 42.61 4.09
722 4705 2.002586 CCGCTCTAACACTTCACCATG 58.997 52.381 0.00 0.00 0.00 3.66
794 7545 5.873164 AGCCGTTAATTAATCCCATATCGAC 59.127 40.000 0.31 0.00 0.00 4.20
814 7565 2.421739 CACCGGCCGGGAATAGAG 59.578 66.667 44.99 22.24 39.97 2.43
816 7567 1.382146 ACCGGCCGGGAATAGAGAA 60.382 57.895 44.99 0.00 39.97 2.87
817 7568 0.763223 ACCGGCCGGGAATAGAGAAT 60.763 55.000 44.99 20.08 39.97 2.40
818 7569 1.263356 CCGGCCGGGAATAGAGAATA 58.737 55.000 37.42 0.00 38.47 1.75
861 7613 4.644234 TCTGAAACAAGAACCAATGCAAGA 59.356 37.500 0.00 0.00 0.00 3.02
898 7650 0.721718 CGAGACAGCGATGGTTTTCC 59.278 55.000 5.32 0.00 41.14 3.13
972 7725 2.028130 GCATGCAAGCCTAAGCGAT 58.972 52.632 14.21 0.00 46.67 4.58
1200 7957 0.736325 GCAAGTACCACAGCGACGAT 60.736 55.000 0.00 0.00 0.00 3.73
1476 8233 1.401552 GTCGCTGAATAATTGGCTGCA 59.598 47.619 0.50 0.00 0.00 4.41
1477 8234 1.672363 TCGCTGAATAATTGGCTGCAG 59.328 47.619 10.11 10.11 0.00 4.41
1478 8235 1.849097 GCTGAATAATTGGCTGCAGC 58.151 50.000 30.88 30.88 41.38 5.25
1479 8236 1.135527 GCTGAATAATTGGCTGCAGCA 59.864 47.619 37.63 20.97 45.78 4.41
1480 8237 2.805845 CTGAATAATTGGCTGCAGCAC 58.194 47.619 37.63 26.73 44.36 4.40
1481 8238 1.132834 TGAATAATTGGCTGCAGCACG 59.867 47.619 37.63 3.24 44.36 5.34
1516 8293 2.449189 GCATTCGCAAATCGCAATGTA 58.551 42.857 0.00 0.00 42.60 2.29
1568 8347 4.260907 CGTGCACCTAGTATGTACGTATGT 60.261 45.833 19.84 0.00 46.78 2.29
1599 8378 0.304705 GACATGGCGTATTTGCTCCG 59.695 55.000 0.00 0.00 34.52 4.63
1615 8394 0.324614 TCCGGAGCTCAAATGCTTCA 59.675 50.000 17.19 0.00 44.17 3.02
1620 8399 3.548214 CGGAGCTCAAATGCTTCATGATG 60.548 47.826 17.19 0.00 44.17 3.07
1631 8410 8.430063 CAAATGCTTCATGATGAACAGTAAAAC 58.570 33.333 12.54 0.00 32.21 2.43
1632 8411 6.882610 TGCTTCATGATGAACAGTAAAACT 57.117 33.333 12.54 0.00 32.21 2.66
1635 8414 8.506437 TGCTTCATGATGAACAGTAAAACTAAG 58.494 33.333 12.54 0.00 32.21 2.18
1636 8415 8.721478 GCTTCATGATGAACAGTAAAACTAAGA 58.279 33.333 12.54 0.00 32.21 2.10
1693 8490 3.674281 TGTATGCTTGCAAAATTTCAGCG 59.326 39.130 0.00 0.00 0.00 5.18
1722 8519 1.136252 CATTCGTGAAAGTCGTGGCAG 60.136 52.381 0.00 0.00 0.00 4.85
1732 8529 3.859411 AGTCGTGGCAGAAAAACAAAA 57.141 38.095 0.00 0.00 0.00 2.44
1773 8570 9.657419 ATGCTAGTTTTGAAAATATTTTGGAGG 57.343 29.630 17.98 2.22 0.00 4.30
1809 8606 8.703336 GTTTTCTTTCACTCCTTAAATGAATGC 58.297 33.333 0.00 0.00 32.61 3.56
1820 8617 2.298411 AATGAATGCCATTTCGTGCC 57.702 45.000 0.00 0.00 42.55 5.01
1849 8646 8.785468 ATTTTGCAAGAATACAAAACATTTGC 57.215 26.923 0.00 0.00 45.55 3.68
1860 8657 6.100792 ACAAAACATTTGCCAAAGTTTACG 57.899 33.333 14.02 11.78 33.45 3.18
1862 8659 5.959652 AAACATTTGCCAAAGTTTACGAC 57.040 34.783 12.78 0.00 32.88 4.34
1929 8735 3.512329 TCGGGTGCAGAATAGTACTTTCA 59.488 43.478 0.00 0.00 0.00 2.69
1956 8763 2.234908 AGGTGTTCTTCCTCAAGATCGG 59.765 50.000 0.00 0.00 38.50 4.18
1957 8764 2.622436 GTGTTCTTCCTCAAGATCGGG 58.378 52.381 0.00 0.00 38.50 5.14
2017 8824 7.120873 GCATGCAAGGATATGTAAGATCAATCT 59.879 37.037 14.21 0.00 39.22 2.40
2082 8889 2.519780 GTGGGGTTTCGGTTGGCA 60.520 61.111 0.00 0.00 0.00 4.92
2091 8898 3.762247 CGGTTGGCAGGGCAATGG 61.762 66.667 11.57 3.38 0.00 3.16
2113 8920 4.876107 GGCAACAATATATAGGACGGATGG 59.124 45.833 0.00 0.00 0.00 3.51
2240 9047 4.156182 GGTTCGATTGATTTTGTTCGTCC 58.844 43.478 0.00 0.00 33.52 4.79
2273 9098 7.395190 TCTCATATTGATTTGAACAAGTGGG 57.605 36.000 0.00 0.00 0.00 4.61
2387 9212 5.581126 TTTTAATGCATGAAAGCCGAGAT 57.419 34.783 9.21 0.00 0.00 2.75
2410 9235 5.976458 TGCCCTGGAAAATGAATTTGATAC 58.024 37.500 0.00 0.00 0.00 2.24
2416 9241 8.186821 CCTGGAAAATGAATTTGATACAGTCTC 58.813 37.037 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.333619 TCGTCATCGCTCGATCAATGA 59.666 47.619 1.30 2.58 36.96 2.57
3 4 2.323059 CATCGTCATCGCTCGATCAAT 58.677 47.619 1.30 0.00 43.43 2.57
5 6 0.661483 GCATCGTCATCGCTCGATCA 60.661 55.000 1.30 0.00 43.43 2.92
6 7 0.386605 AGCATCGTCATCGCTCGATC 60.387 55.000 1.30 0.00 43.43 3.69
7 8 0.031314 AAGCATCGTCATCGCTCGAT 59.969 50.000 0.00 0.00 45.63 3.59
8 9 0.867329 CAAGCATCGTCATCGCTCGA 60.867 55.000 0.00 0.00 40.28 4.04
9 10 1.142185 ACAAGCATCGTCATCGCTCG 61.142 55.000 0.00 0.00 34.11 5.03
10 11 0.299895 CACAAGCATCGTCATCGCTC 59.700 55.000 0.00 0.00 34.11 5.03
11 12 1.699656 GCACAAGCATCGTCATCGCT 61.700 55.000 0.00 0.00 41.58 4.93
12 13 1.297158 GCACAAGCATCGTCATCGC 60.297 57.895 0.00 0.00 41.58 4.58
13 14 0.299895 GAGCACAAGCATCGTCATCG 59.700 55.000 0.00 0.00 45.49 3.84
14 15 1.326852 CAGAGCACAAGCATCGTCATC 59.673 52.381 0.00 0.00 45.49 2.92
15 16 1.338484 ACAGAGCACAAGCATCGTCAT 60.338 47.619 0.00 0.00 45.49 3.06
16 17 0.033920 ACAGAGCACAAGCATCGTCA 59.966 50.000 0.00 0.00 45.49 4.35
17 18 1.127582 GAACAGAGCACAAGCATCGTC 59.872 52.381 0.00 0.00 45.49 4.20
18 19 1.151668 GAACAGAGCACAAGCATCGT 58.848 50.000 0.00 0.00 45.49 3.73
19 20 0.445436 GGAACAGAGCACAAGCATCG 59.555 55.000 0.00 0.00 45.49 3.84
20 21 0.807496 GGGAACAGAGCACAAGCATC 59.193 55.000 0.00 0.00 45.49 3.91
21 22 0.403271 AGGGAACAGAGCACAAGCAT 59.597 50.000 0.00 0.00 45.49 3.79
22 23 0.183492 AAGGGAACAGAGCACAAGCA 59.817 50.000 0.00 0.00 45.49 3.91
23 24 0.877743 GAAGGGAACAGAGCACAAGC 59.122 55.000 0.00 0.00 42.56 4.01
24 25 2.551459 CAAGAAGGGAACAGAGCACAAG 59.449 50.000 0.00 0.00 0.00 3.16
25 26 2.575532 CAAGAAGGGAACAGAGCACAA 58.424 47.619 0.00 0.00 0.00 3.33
26 27 1.202806 CCAAGAAGGGAACAGAGCACA 60.203 52.381 0.00 0.00 0.00 4.57
27 28 1.072331 TCCAAGAAGGGAACAGAGCAC 59.928 52.381 0.00 0.00 38.24 4.40
28 29 1.349026 CTCCAAGAAGGGAACAGAGCA 59.651 52.381 0.00 0.00 36.27 4.26
29 30 1.339535 CCTCCAAGAAGGGAACAGAGC 60.340 57.143 0.00 0.00 36.27 4.09
30 31 1.339535 GCCTCCAAGAAGGGAACAGAG 60.340 57.143 0.00 0.00 36.27 3.35
31 32 0.693049 GCCTCCAAGAAGGGAACAGA 59.307 55.000 0.00 0.00 36.27 3.41
32 33 0.401738 TGCCTCCAAGAAGGGAACAG 59.598 55.000 0.00 0.00 36.27 3.16
33 34 1.004745 GATGCCTCCAAGAAGGGAACA 59.995 52.381 0.00 0.00 40.47 3.18
34 35 1.756430 GATGCCTCCAAGAAGGGAAC 58.244 55.000 0.00 0.00 40.47 3.62
35 36 0.253044 CGATGCCTCCAAGAAGGGAA 59.747 55.000 0.00 0.00 40.47 3.97
36 37 0.909610 ACGATGCCTCCAAGAAGGGA 60.910 55.000 0.00 0.00 41.43 4.20
37 38 0.745845 CACGATGCCTCCAAGAAGGG 60.746 60.000 0.00 0.00 36.88 3.95
38 39 0.036010 ACACGATGCCTCCAAGAAGG 60.036 55.000 0.00 0.00 39.62 3.46
39 40 1.813513 AACACGATGCCTCCAAGAAG 58.186 50.000 0.00 0.00 0.00 2.85
40 41 1.879380 CAAACACGATGCCTCCAAGAA 59.121 47.619 0.00 0.00 0.00 2.52
41 42 1.522668 CAAACACGATGCCTCCAAGA 58.477 50.000 0.00 0.00 0.00 3.02
42 43 0.523072 CCAAACACGATGCCTCCAAG 59.477 55.000 0.00 0.00 0.00 3.61
43 44 0.109532 TCCAAACACGATGCCTCCAA 59.890 50.000 0.00 0.00 0.00 3.53
44 45 0.321564 CTCCAAACACGATGCCTCCA 60.322 55.000 0.00 0.00 0.00 3.86
45 46 0.036388 TCTCCAAACACGATGCCTCC 60.036 55.000 0.00 0.00 0.00 4.30
46 47 1.808411 TTCTCCAAACACGATGCCTC 58.192 50.000 0.00 0.00 0.00 4.70
47 48 1.880027 GTTTCTCCAAACACGATGCCT 59.120 47.619 0.00 0.00 41.53 4.75
48 49 1.068541 GGTTTCTCCAAACACGATGCC 60.069 52.381 0.00 0.00 43.41 4.40
49 50 1.068541 GGGTTTCTCCAAACACGATGC 60.069 52.381 0.00 0.00 43.41 3.91
50 51 1.539827 GGGGTTTCTCCAAACACGATG 59.460 52.381 0.00 0.00 45.68 3.84
51 52 1.423921 AGGGGTTTCTCCAAACACGAT 59.576 47.619 0.00 0.00 45.68 3.73
52 53 0.841289 AGGGGTTTCTCCAAACACGA 59.159 50.000 0.00 0.00 45.68 4.35
53 54 1.687563 AAGGGGTTTCTCCAAACACG 58.312 50.000 0.38 0.00 45.68 4.49
54 55 2.483013 GCAAAGGGGTTTCTCCAAACAC 60.483 50.000 0.38 0.00 44.22 3.32
55 56 1.760029 GCAAAGGGGTTTCTCCAAACA 59.240 47.619 0.38 0.00 43.41 2.83
56 57 1.269569 CGCAAAGGGGTTTCTCCAAAC 60.270 52.381 0.00 0.00 41.22 2.93
57 58 1.036707 CGCAAAGGGGTTTCTCCAAA 58.963 50.000 0.00 0.00 38.11 3.28
58 59 0.825840 CCGCAAAGGGGTTTCTCCAA 60.826 55.000 0.00 0.00 38.11 3.53
59 60 1.228429 CCGCAAAGGGGTTTCTCCA 60.228 57.895 0.00 0.00 38.11 3.86
60 61 1.228459 ACCGCAAAGGGGTTTCTCC 60.228 57.895 0.00 0.00 46.84 3.71
61 62 4.494515 ACCGCAAAGGGGTTTCTC 57.505 55.556 0.00 0.00 46.84 2.87
70 71 2.869503 ATAGCACCCGGACCGCAAAG 62.870 60.000 8.86 0.00 0.00 2.77
71 72 2.862674 GATAGCACCCGGACCGCAAA 62.863 60.000 8.86 0.00 0.00 3.68
72 73 3.379865 GATAGCACCCGGACCGCAA 62.380 63.158 8.86 0.00 0.00 4.85
73 74 3.845259 GATAGCACCCGGACCGCA 61.845 66.667 8.86 0.00 0.00 5.69
74 75 2.588856 AAAGATAGCACCCGGACCGC 62.589 60.000 8.86 1.45 0.00 5.68
75 76 0.810031 CAAAGATAGCACCCGGACCG 60.810 60.000 6.99 6.99 0.00 4.79
76 77 0.463833 CCAAAGATAGCACCCGGACC 60.464 60.000 0.73 0.00 0.00 4.46
77 78 0.252197 ACCAAAGATAGCACCCGGAC 59.748 55.000 0.73 0.00 0.00 4.79
78 79 0.251916 CACCAAAGATAGCACCCGGA 59.748 55.000 0.73 0.00 0.00 5.14
79 80 0.748005 CCACCAAAGATAGCACCCGG 60.748 60.000 0.00 0.00 0.00 5.73
80 81 0.035439 ACCACCAAAGATAGCACCCG 60.035 55.000 0.00 0.00 0.00 5.28
81 82 1.463674 CACCACCAAAGATAGCACCC 58.536 55.000 0.00 0.00 0.00 4.61
82 83 1.271926 ACCACCACCAAAGATAGCACC 60.272 52.381 0.00 0.00 0.00 5.01
83 84 2.200373 ACCACCACCAAAGATAGCAC 57.800 50.000 0.00 0.00 0.00 4.40
84 85 2.969821 AACCACCACCAAAGATAGCA 57.030 45.000 0.00 0.00 0.00 3.49
85 86 3.939592 GACTAACCACCACCAAAGATAGC 59.060 47.826 0.00 0.00 0.00 2.97
86 87 5.422214 AGACTAACCACCACCAAAGATAG 57.578 43.478 0.00 0.00 0.00 2.08
87 88 6.021030 AGTAGACTAACCACCACCAAAGATA 58.979 40.000 0.00 0.00 0.00 1.98
88 89 4.844655 AGTAGACTAACCACCACCAAAGAT 59.155 41.667 0.00 0.00 0.00 2.40
89 90 4.039973 CAGTAGACTAACCACCACCAAAGA 59.960 45.833 0.00 0.00 0.00 2.52
90 91 4.315803 CAGTAGACTAACCACCACCAAAG 58.684 47.826 0.00 0.00 0.00 2.77
91 92 3.495453 GCAGTAGACTAACCACCACCAAA 60.495 47.826 0.00 0.00 0.00 3.28
92 93 2.038033 GCAGTAGACTAACCACCACCAA 59.962 50.000 0.00 0.00 0.00 3.67
93 94 1.621814 GCAGTAGACTAACCACCACCA 59.378 52.381 0.00 0.00 0.00 4.17
94 95 1.900486 AGCAGTAGACTAACCACCACC 59.100 52.381 0.00 0.00 0.00 4.61
95 96 2.931320 GCAGCAGTAGACTAACCACCAC 60.931 54.545 0.00 0.00 0.00 4.16
96 97 1.275291 GCAGCAGTAGACTAACCACCA 59.725 52.381 0.00 0.00 0.00 4.17
97 98 1.736032 CGCAGCAGTAGACTAACCACC 60.736 57.143 0.00 0.00 0.00 4.61
98 99 1.201647 TCGCAGCAGTAGACTAACCAC 59.798 52.381 0.00 0.00 0.00 4.16
99 100 1.472878 CTCGCAGCAGTAGACTAACCA 59.527 52.381 0.00 0.00 0.00 3.67
100 101 1.473278 ACTCGCAGCAGTAGACTAACC 59.527 52.381 0.00 0.00 0.00 2.85
101 102 2.161808 TCACTCGCAGCAGTAGACTAAC 59.838 50.000 0.00 0.00 0.00 2.34
102 103 2.433436 TCACTCGCAGCAGTAGACTAA 58.567 47.619 0.00 0.00 0.00 2.24
103 104 2.109425 TCACTCGCAGCAGTAGACTA 57.891 50.000 0.00 0.00 0.00 2.59
104 105 1.468985 ATCACTCGCAGCAGTAGACT 58.531 50.000 0.00 0.00 0.00 3.24
105 106 1.923204 CAATCACTCGCAGCAGTAGAC 59.077 52.381 0.00 0.00 0.00 2.59
106 107 1.818674 TCAATCACTCGCAGCAGTAGA 59.181 47.619 0.00 0.00 0.00 2.59
107 108 2.284263 TCAATCACTCGCAGCAGTAG 57.716 50.000 0.00 0.00 0.00 2.57
108 109 2.166254 TGATCAATCACTCGCAGCAGTA 59.834 45.455 0.00 0.00 0.00 2.74
109 110 1.066645 TGATCAATCACTCGCAGCAGT 60.067 47.619 0.00 0.00 0.00 4.40
110 111 1.648504 TGATCAATCACTCGCAGCAG 58.351 50.000 0.00 0.00 0.00 4.24
111 112 3.838795 TGATCAATCACTCGCAGCA 57.161 47.368 0.00 0.00 0.00 4.41
120 121 1.340308 CCCTGCCACAGTGATCAATCA 60.340 52.381 0.62 0.00 0.00 2.57
121 122 1.386533 CCCTGCCACAGTGATCAATC 58.613 55.000 0.62 0.00 0.00 2.67
122 123 0.682209 GCCCTGCCACAGTGATCAAT 60.682 55.000 0.62 0.00 0.00 2.57
123 124 1.303561 GCCCTGCCACAGTGATCAA 60.304 57.895 0.62 0.00 0.00 2.57
124 125 1.782201 AAGCCCTGCCACAGTGATCA 61.782 55.000 0.62 0.00 0.00 2.92
125 126 0.610232 AAAGCCCTGCCACAGTGATC 60.610 55.000 0.62 0.00 0.00 2.92
126 127 0.178953 AAAAGCCCTGCCACAGTGAT 60.179 50.000 0.62 0.00 0.00 3.06
127 128 0.396974 AAAAAGCCCTGCCACAGTGA 60.397 50.000 0.62 0.00 0.00 3.41
128 129 0.032540 GAAAAAGCCCTGCCACAGTG 59.967 55.000 0.00 0.00 0.00 3.66
129 130 1.115326 GGAAAAAGCCCTGCCACAGT 61.115 55.000 0.00 0.00 0.00 3.55
130 131 0.829182 AGGAAAAAGCCCTGCCACAG 60.829 55.000 0.00 0.00 31.66 3.66
131 132 0.398381 AAGGAAAAAGCCCTGCCACA 60.398 50.000 0.00 0.00 33.55 4.17
132 133 0.758734 AAAGGAAAAAGCCCTGCCAC 59.241 50.000 0.00 0.00 33.55 5.01
133 134 1.506025 AAAAGGAAAAAGCCCTGCCA 58.494 45.000 0.00 0.00 33.55 4.92
134 135 2.104792 AGAAAAAGGAAAAAGCCCTGCC 59.895 45.455 0.00 0.00 33.55 4.85
135 136 3.475566 AGAAAAAGGAAAAAGCCCTGC 57.524 42.857 0.00 0.00 33.55 4.85
136 137 6.115446 AGAAAAGAAAAAGGAAAAAGCCCTG 58.885 36.000 0.00 0.00 33.55 4.45
137 138 6.156949 AGAGAAAAGAAAAAGGAAAAAGCCCT 59.843 34.615 0.00 0.00 35.03 5.19
138 139 6.349300 AGAGAAAAGAAAAAGGAAAAAGCCC 58.651 36.000 0.00 0.00 0.00 5.19
139 140 7.268586 AGAGAGAAAAGAAAAAGGAAAAAGCC 58.731 34.615 0.00 0.00 0.00 4.35
140 141 8.194104 AGAGAGAGAAAAGAAAAAGGAAAAAGC 58.806 33.333 0.00 0.00 0.00 3.51
145 146 9.860898 CAAAAAGAGAGAGAAAAGAAAAAGGAA 57.139 29.630 0.00 0.00 0.00 3.36
146 147 8.470002 CCAAAAAGAGAGAGAAAAGAAAAAGGA 58.530 33.333 0.00 0.00 0.00 3.36
147 148 7.223582 GCCAAAAAGAGAGAGAAAAGAAAAAGG 59.776 37.037 0.00 0.00 0.00 3.11
148 149 7.978414 AGCCAAAAAGAGAGAGAAAAGAAAAAG 59.022 33.333 0.00 0.00 0.00 2.27
149 150 7.761249 CAGCCAAAAAGAGAGAGAAAAGAAAAA 59.239 33.333 0.00 0.00 0.00 1.94
150 151 7.093771 ACAGCCAAAAAGAGAGAGAAAAGAAAA 60.094 33.333 0.00 0.00 0.00 2.29
151 152 6.378280 ACAGCCAAAAAGAGAGAGAAAAGAAA 59.622 34.615 0.00 0.00 0.00 2.52
152 153 5.888161 ACAGCCAAAAAGAGAGAGAAAAGAA 59.112 36.000 0.00 0.00 0.00 2.52
153 154 5.440610 ACAGCCAAAAAGAGAGAGAAAAGA 58.559 37.500 0.00 0.00 0.00 2.52
154 155 5.764487 ACAGCCAAAAAGAGAGAGAAAAG 57.236 39.130 0.00 0.00 0.00 2.27
157 158 9.770097 CATATATACAGCCAAAAAGAGAGAGAA 57.230 33.333 0.00 0.00 0.00 2.87
158 159 7.875041 GCATATATACAGCCAAAAAGAGAGAGA 59.125 37.037 0.00 0.00 0.00 3.10
159 160 7.658982 TGCATATATACAGCCAAAAAGAGAGAG 59.341 37.037 6.56 0.00 0.00 3.20
160 161 7.508687 TGCATATATACAGCCAAAAAGAGAGA 58.491 34.615 6.56 0.00 0.00 3.10
161 162 7.734924 TGCATATATACAGCCAAAAAGAGAG 57.265 36.000 6.56 0.00 0.00 3.20
162 163 7.391554 GGATGCATATATACAGCCAAAAAGAGA 59.608 37.037 14.24 0.00 42.00 3.10
163 164 7.392673 AGGATGCATATATACAGCCAAAAAGAG 59.607 37.037 19.92 0.00 44.86 2.85
164 165 7.233632 AGGATGCATATATACAGCCAAAAAGA 58.766 34.615 19.92 0.00 44.86 2.52
165 166 7.175467 TGAGGATGCATATATACAGCCAAAAAG 59.825 37.037 19.92 0.00 44.86 2.27
166 167 7.003482 TGAGGATGCATATATACAGCCAAAAA 58.997 34.615 19.92 2.49 44.86 1.94
167 168 6.541907 TGAGGATGCATATATACAGCCAAAA 58.458 36.000 19.92 4.65 44.86 2.44
168 169 6.125589 TGAGGATGCATATATACAGCCAAA 57.874 37.500 19.92 6.84 44.86 3.28
169 170 5.760484 TGAGGATGCATATATACAGCCAA 57.240 39.130 19.92 7.16 44.86 4.52
170 171 5.760484 TTGAGGATGCATATATACAGCCA 57.240 39.130 19.92 0.24 44.86 4.75
171 172 6.590068 AGATTGAGGATGCATATATACAGCC 58.410 40.000 11.66 11.66 42.74 4.85
172 173 7.767659 TGAAGATTGAGGATGCATATATACAGC 59.232 37.037 0.00 0.00 0.00 4.40
173 174 9.315525 CTGAAGATTGAGGATGCATATATACAG 57.684 37.037 0.00 0.00 0.00 2.74
174 175 8.819845 ACTGAAGATTGAGGATGCATATATACA 58.180 33.333 0.00 0.00 0.00 2.29
175 176 9.664332 AACTGAAGATTGAGGATGCATATATAC 57.336 33.333 0.00 0.00 0.00 1.47
176 177 9.662947 CAACTGAAGATTGAGGATGCATATATA 57.337 33.333 0.00 0.00 0.00 0.86
177 178 7.610692 CCAACTGAAGATTGAGGATGCATATAT 59.389 37.037 0.00 0.00 0.00 0.86
178 179 6.938596 CCAACTGAAGATTGAGGATGCATATA 59.061 38.462 0.00 0.00 0.00 0.86
179 180 5.768662 CCAACTGAAGATTGAGGATGCATAT 59.231 40.000 0.00 0.00 0.00 1.78
180 181 5.128205 CCAACTGAAGATTGAGGATGCATA 58.872 41.667 0.00 0.00 0.00 3.14
181 182 3.952323 CCAACTGAAGATTGAGGATGCAT 59.048 43.478 0.00 0.00 0.00 3.96
182 183 3.245016 ACCAACTGAAGATTGAGGATGCA 60.245 43.478 0.00 0.00 0.00 3.96
183 184 3.350833 ACCAACTGAAGATTGAGGATGC 58.649 45.455 0.00 0.00 0.00 3.91
184 185 4.582869 TGACCAACTGAAGATTGAGGATG 58.417 43.478 0.00 0.00 0.00 3.51
185 186 4.916041 TGACCAACTGAAGATTGAGGAT 57.084 40.909 0.00 0.00 0.00 3.24
186 187 4.916041 ATGACCAACTGAAGATTGAGGA 57.084 40.909 0.00 0.00 0.00 3.71
187 188 5.972107 AAATGACCAACTGAAGATTGAGG 57.028 39.130 0.00 0.00 0.00 3.86
188 189 6.742109 ACAAAATGACCAACTGAAGATTGAG 58.258 36.000 0.00 0.00 0.00 3.02
189 190 6.513230 CGACAAAATGACCAACTGAAGATTGA 60.513 38.462 0.00 0.00 0.00 2.57
190 191 5.626543 CGACAAAATGACCAACTGAAGATTG 59.373 40.000 0.00 0.00 0.00 2.67
191 192 5.278463 CCGACAAAATGACCAACTGAAGATT 60.278 40.000 0.00 0.00 0.00 2.40
192 193 4.216257 CCGACAAAATGACCAACTGAAGAT 59.784 41.667 0.00 0.00 0.00 2.40
193 194 3.563808 CCGACAAAATGACCAACTGAAGA 59.436 43.478 0.00 0.00 0.00 2.87
194 195 3.315191 ACCGACAAAATGACCAACTGAAG 59.685 43.478 0.00 0.00 0.00 3.02
195 196 3.066064 CACCGACAAAATGACCAACTGAA 59.934 43.478 0.00 0.00 0.00 3.02
196 197 2.616376 CACCGACAAAATGACCAACTGA 59.384 45.455 0.00 0.00 0.00 3.41
197 198 2.858260 GCACCGACAAAATGACCAACTG 60.858 50.000 0.00 0.00 0.00 3.16
198 199 1.336755 GCACCGACAAAATGACCAACT 59.663 47.619 0.00 0.00 0.00 3.16
199 200 1.066303 TGCACCGACAAAATGACCAAC 59.934 47.619 0.00 0.00 0.00 3.77
200 201 1.336440 CTGCACCGACAAAATGACCAA 59.664 47.619 0.00 0.00 0.00 3.67
201 202 0.950836 CTGCACCGACAAAATGACCA 59.049 50.000 0.00 0.00 0.00 4.02
202 203 1.197721 CTCTGCACCGACAAAATGACC 59.802 52.381 0.00 0.00 0.00 4.02
203 204 1.197721 CCTCTGCACCGACAAAATGAC 59.802 52.381 0.00 0.00 0.00 3.06
204 205 1.522668 CCTCTGCACCGACAAAATGA 58.477 50.000 0.00 0.00 0.00 2.57
205 206 0.109597 GCCTCTGCACCGACAAAATG 60.110 55.000 0.00 0.00 37.47 2.32
206 207 0.250901 AGCCTCTGCACCGACAAAAT 60.251 50.000 0.00 0.00 41.13 1.82
207 208 1.148273 AGCCTCTGCACCGACAAAA 59.852 52.632 0.00 0.00 41.13 2.44
208 209 1.597854 CAGCCTCTGCACCGACAAA 60.598 57.895 0.00 0.00 41.13 2.83
209 210 2.031012 CAGCCTCTGCACCGACAA 59.969 61.111 0.00 0.00 41.13 3.18
210 211 4.007644 CCAGCCTCTGCACCGACA 62.008 66.667 0.00 0.00 41.13 4.35
211 212 4.767255 CCCAGCCTCTGCACCGAC 62.767 72.222 0.00 0.00 41.13 4.79
214 215 3.909086 GACACCCAGCCTCTGCACC 62.909 68.421 0.00 0.00 41.13 5.01
215 216 2.359230 GACACCCAGCCTCTGCAC 60.359 66.667 0.00 0.00 41.13 4.57
216 217 1.782201 AATGACACCCAGCCTCTGCA 61.782 55.000 0.00 0.00 41.13 4.41
217 218 0.253044 TAATGACACCCAGCCTCTGC 59.747 55.000 0.00 0.00 37.95 4.26
218 219 1.556911 ACTAATGACACCCAGCCTCTG 59.443 52.381 0.00 0.00 0.00 3.35
219 220 1.958288 ACTAATGACACCCAGCCTCT 58.042 50.000 0.00 0.00 0.00 3.69
220 221 3.643792 AGATACTAATGACACCCAGCCTC 59.356 47.826 0.00 0.00 0.00 4.70
221 222 3.658725 AGATACTAATGACACCCAGCCT 58.341 45.455 0.00 0.00 0.00 4.58
222 223 4.141711 TGAAGATACTAATGACACCCAGCC 60.142 45.833 0.00 0.00 0.00 4.85
223 224 4.811557 GTGAAGATACTAATGACACCCAGC 59.188 45.833 0.00 0.00 0.00 4.85
224 225 5.043903 CGTGAAGATACTAATGACACCCAG 58.956 45.833 0.00 0.00 0.00 4.45
225 226 4.707934 TCGTGAAGATACTAATGACACCCA 59.292 41.667 0.00 0.00 0.00 4.51
226 227 5.258456 TCGTGAAGATACTAATGACACCC 57.742 43.478 0.00 0.00 0.00 4.61
253 254 8.889717 ACCGACATATTTTTCTCGACAAATATT 58.110 29.630 7.83 0.00 34.64 1.28
254 255 8.433421 ACCGACATATTTTTCTCGACAAATAT 57.567 30.769 5.61 5.61 36.44 1.28
255 256 7.837202 ACCGACATATTTTTCTCGACAAATA 57.163 32.000 1.96 1.96 31.11 1.40
256 257 6.737254 ACCGACATATTTTTCTCGACAAAT 57.263 33.333 0.00 0.00 0.00 2.32
257 258 6.548441 AACCGACATATTTTTCTCGACAAA 57.452 33.333 0.00 0.00 0.00 2.83
258 259 6.367421 CAAACCGACATATTTTTCTCGACAA 58.633 36.000 0.00 0.00 0.00 3.18
259 260 5.615984 GCAAACCGACATATTTTTCTCGACA 60.616 40.000 0.00 0.00 0.00 4.35
260 261 4.786575 GCAAACCGACATATTTTTCTCGAC 59.213 41.667 0.00 0.00 0.00 4.20
261 262 4.142773 GGCAAACCGACATATTTTTCTCGA 60.143 41.667 0.00 0.00 0.00 4.04
262 263 4.095610 GGCAAACCGACATATTTTTCTCG 58.904 43.478 0.00 0.00 0.00 4.04
263 264 5.310720 AGGCAAACCGACATATTTTTCTC 57.689 39.130 0.00 0.00 42.76 2.87
264 265 8.691661 ATATAGGCAAACCGACATATTTTTCT 57.308 30.769 0.00 0.00 42.76 2.52
265 266 9.744468 AAATATAGGCAAACCGACATATTTTTC 57.256 29.630 0.00 0.00 42.76 2.29
272 273 9.216117 GACTATAAAATATAGGCAAACCGACAT 57.784 33.333 5.55 0.00 42.76 3.06
273 274 8.205512 TGACTATAAAATATAGGCAAACCGACA 58.794 33.333 9.89 0.00 42.76 4.35
274 275 8.597662 TGACTATAAAATATAGGCAAACCGAC 57.402 34.615 9.89 0.00 42.76 4.79
275 276 9.431887 GATGACTATAAAATATAGGCAAACCGA 57.568 33.333 15.01 0.00 42.35 4.69
276 277 8.380644 CGATGACTATAAAATATAGGCAAACCG 58.619 37.037 15.01 14.09 42.35 4.44
277 278 9.216117 ACGATGACTATAAAATATAGGCAAACC 57.784 33.333 15.01 8.14 42.35 3.27
281 282 9.214957 CCAAACGATGACTATAAAATATAGGCA 57.785 33.333 13.75 13.75 43.14 4.75
282 283 9.216117 ACCAAACGATGACTATAAAATATAGGC 57.784 33.333 8.75 6.38 0.00 3.93
286 287 8.974060 ACCACCAAACGATGACTATAAAATAT 57.026 30.769 0.00 0.00 0.00 1.28
287 288 7.223193 CGACCACCAAACGATGACTATAAAATA 59.777 37.037 0.00 0.00 0.00 1.40
288 289 6.036735 CGACCACCAAACGATGACTATAAAAT 59.963 38.462 0.00 0.00 0.00 1.82
289 290 5.349270 CGACCACCAAACGATGACTATAAAA 59.651 40.000 0.00 0.00 0.00 1.52
290 291 4.865925 CGACCACCAAACGATGACTATAAA 59.134 41.667 0.00 0.00 0.00 1.40
291 292 4.158209 TCGACCACCAAACGATGACTATAA 59.842 41.667 0.00 0.00 0.00 0.98
292 293 3.695556 TCGACCACCAAACGATGACTATA 59.304 43.478 0.00 0.00 0.00 1.31
293 294 2.494471 TCGACCACCAAACGATGACTAT 59.506 45.455 0.00 0.00 0.00 2.12
294 295 1.887854 TCGACCACCAAACGATGACTA 59.112 47.619 0.00 0.00 0.00 2.59
295 296 0.677288 TCGACCACCAAACGATGACT 59.323 50.000 0.00 0.00 0.00 3.41
296 297 0.788391 GTCGACCACCAAACGATGAC 59.212 55.000 3.51 0.00 38.27 3.06
297 298 0.665068 CGTCGACCACCAAACGATGA 60.665 55.000 10.58 0.00 42.98 2.92
298 299 1.623081 CCGTCGACCACCAAACGATG 61.623 60.000 10.58 0.00 40.98 3.84
299 300 1.373748 CCGTCGACCACCAAACGAT 60.374 57.895 10.58 0.00 38.27 3.73
300 301 1.808531 ATCCGTCGACCACCAAACGA 61.809 55.000 10.58 0.00 37.31 3.85
301 302 0.947180 AATCCGTCGACCACCAAACG 60.947 55.000 10.58 0.00 35.01 3.60
302 303 1.232119 AAATCCGTCGACCACCAAAC 58.768 50.000 10.58 0.00 0.00 2.93
303 304 2.299582 TCTAAATCCGTCGACCACCAAA 59.700 45.455 10.58 0.00 0.00 3.28
304 305 1.894466 TCTAAATCCGTCGACCACCAA 59.106 47.619 10.58 0.00 0.00 3.67
305 306 1.548081 TCTAAATCCGTCGACCACCA 58.452 50.000 10.58 0.00 0.00 4.17
306 307 2.159142 ACATCTAAATCCGTCGACCACC 60.159 50.000 10.58 0.00 0.00 4.61
307 308 3.160777 ACATCTAAATCCGTCGACCAC 57.839 47.619 10.58 0.00 0.00 4.16
308 309 4.987408 TTACATCTAAATCCGTCGACCA 57.013 40.909 10.58 0.00 0.00 4.02
309 310 6.839820 AAATTACATCTAAATCCGTCGACC 57.160 37.500 10.58 0.00 0.00 4.79
331 332 9.834628 GTCCAACGAACATCAGAAATAATAAAA 57.165 29.630 0.00 0.00 0.00 1.52
332 333 9.226606 AGTCCAACGAACATCAGAAATAATAAA 57.773 29.630 0.00 0.00 0.00 1.40
333 334 8.786826 AGTCCAACGAACATCAGAAATAATAA 57.213 30.769 0.00 0.00 0.00 1.40
334 335 9.309516 GTAGTCCAACGAACATCAGAAATAATA 57.690 33.333 0.00 0.00 0.00 0.98
335 336 7.280205 GGTAGTCCAACGAACATCAGAAATAAT 59.720 37.037 0.00 0.00 0.00 1.28
336 337 6.592607 GGTAGTCCAACGAACATCAGAAATAA 59.407 38.462 0.00 0.00 0.00 1.40
337 338 6.103997 GGTAGTCCAACGAACATCAGAAATA 58.896 40.000 0.00 0.00 0.00 1.40
338 339 4.935808 GGTAGTCCAACGAACATCAGAAAT 59.064 41.667 0.00 0.00 0.00 2.17
339 340 4.202274 TGGTAGTCCAACGAACATCAGAAA 60.202 41.667 0.00 0.00 41.25 2.52
340 341 3.322541 TGGTAGTCCAACGAACATCAGAA 59.677 43.478 0.00 0.00 41.25 3.02
341 342 2.894765 TGGTAGTCCAACGAACATCAGA 59.105 45.455 0.00 0.00 41.25 3.27
342 343 3.313012 TGGTAGTCCAACGAACATCAG 57.687 47.619 0.00 0.00 41.25 2.90
370 371 9.618890 TCTGGAAAATTTTCGATCTATTCATCT 57.381 29.630 21.53 0.00 38.06 2.90
398 399 8.644216 CCCACCTACTTTGTTTAGGTTTTTATT 58.356 33.333 0.00 0.00 46.09 1.40
399 400 7.256048 GCCCACCTACTTTGTTTAGGTTTTTAT 60.256 37.037 0.00 0.00 46.09 1.40
400 401 6.040729 GCCCACCTACTTTGTTTAGGTTTTTA 59.959 38.462 0.00 0.00 46.09 1.52
401 402 5.163385 GCCCACCTACTTTGTTTAGGTTTTT 60.163 40.000 0.00 0.00 46.09 1.94
402 403 4.342951 GCCCACCTACTTTGTTTAGGTTTT 59.657 41.667 0.00 0.00 46.09 2.43
403 404 3.893200 GCCCACCTACTTTGTTTAGGTTT 59.107 43.478 0.00 0.00 46.09 3.27
404 405 3.139584 AGCCCACCTACTTTGTTTAGGTT 59.860 43.478 0.00 0.00 46.09 3.50
406 407 3.081804 CAGCCCACCTACTTTGTTTAGG 58.918 50.000 0.00 0.00 41.86 2.69
407 408 3.751518 ACAGCCCACCTACTTTGTTTAG 58.248 45.455 0.00 0.00 0.00 1.85
408 409 3.868619 ACAGCCCACCTACTTTGTTTA 57.131 42.857 0.00 0.00 0.00 2.01
409 410 2.748209 ACAGCCCACCTACTTTGTTT 57.252 45.000 0.00 0.00 0.00 2.83
456 460 8.087982 TGTGTAGAGAAAACATTTCAAGCTAG 57.912 34.615 5.71 0.00 0.00 3.42
457 461 8.621532 ATGTGTAGAGAAAACATTTCAAGCTA 57.378 30.769 5.71 2.17 30.41 3.32
475 518 6.309980 GTGTCAGAGTTGATTGAGATGTGTAG 59.690 42.308 0.00 0.00 35.39 2.74
507 550 8.046294 TCGCTTTGAGCCAATAGTATTTTAAA 57.954 30.769 0.00 0.00 38.18 1.52
511 554 5.648092 AGTTCGCTTTGAGCCAATAGTATTT 59.352 36.000 0.00 0.00 38.18 1.40
523 566 4.962693 CACTTATGGAAGTTCGCTTTGAG 58.037 43.478 0.00 0.00 43.70 3.02
539 582 6.183361 TGCTCCATTAGTAGAATGCCACTTAT 60.183 38.462 0.00 0.00 0.00 1.73
545 588 3.561725 GTGTGCTCCATTAGTAGAATGCC 59.438 47.826 0.00 0.00 0.00 4.40
557 600 4.292186 AGTGTAATCAAGTGTGCTCCAT 57.708 40.909 0.00 0.00 0.00 3.41
563 606 5.928839 AGCTCTGTTAGTGTAATCAAGTGTG 59.071 40.000 0.00 0.00 0.00 3.82
564 607 5.928839 CAGCTCTGTTAGTGTAATCAAGTGT 59.071 40.000 0.00 0.00 0.00 3.55
575 618 5.255710 AGTAGTATGCAGCTCTGTTAGTG 57.744 43.478 0.00 0.00 0.00 2.74
577 620 6.261158 TCAGTAGTAGTATGCAGCTCTGTTAG 59.739 42.308 0.00 0.00 0.00 2.34
684 735 1.207089 CGGTAATTCCAGAGCCAGTGA 59.793 52.381 0.00 0.00 35.57 3.41
689 740 0.466124 AGAGCGGTAATTCCAGAGCC 59.534 55.000 0.00 0.00 35.57 4.70
708 759 6.514212 CGTTTGGATTTCATGGTGAAGTGTTA 60.514 38.462 0.00 0.00 37.70 2.41
722 4705 0.509499 TGACGACGCGTTTGGATTTC 59.491 50.000 15.53 3.61 41.37 2.17
794 7545 3.750373 CTATTCCCGGCCGGTGTGG 62.750 68.421 40.52 26.26 42.50 4.17
861 7613 1.727467 GTGTGCACCGCTGTCTTTT 59.273 52.632 15.69 0.00 0.00 2.27
898 7650 4.319477 CGTTGGATTCTGGCGGTTTATATG 60.319 45.833 0.00 0.00 0.00 1.78
911 7663 0.035152 TGCTCATGGCGTTGGATTCT 60.035 50.000 0.00 0.00 45.43 2.40
1200 7957 4.334118 AGCGCCACCAGCATGTCA 62.334 61.111 2.29 0.00 44.04 3.58
1380 8137 3.691342 TTGGTGTCGAGCCCGAGG 61.691 66.667 0.00 0.00 46.52 4.63
1419 8176 1.608055 TAACTCAGACGTCGGACCAA 58.392 50.000 14.65 0.00 0.00 3.67
1448 8205 4.084537 CCAATTATTCAGCGACCGATGTAC 60.085 45.833 7.54 0.00 32.75 2.90
1450 8207 2.872245 CCAATTATTCAGCGACCGATGT 59.128 45.455 7.54 0.00 32.75 3.06
1568 8347 3.336468 ACGCCATGTCCGTTTTATTACA 58.664 40.909 3.16 0.00 34.96 2.41
1599 8378 3.630769 TCATCATGAAGCATTTGAGCTCC 59.369 43.478 12.15 0.00 45.89 4.70
1648 8445 8.785329 ACAAAACATTTGTCAAACTTTACCAT 57.215 26.923 0.00 0.00 0.00 3.55
1656 8453 6.628461 GCAAGCATACAAAACATTTGTCAAAC 59.372 34.615 11.40 2.05 34.11 2.93
1722 8519 9.715123 ATTTTTGGAACATCGATTTTGTTTTTC 57.285 25.926 0.60 0.00 39.30 2.29
1732 8529 6.515272 AACTAGCATTTTTGGAACATCGAT 57.485 33.333 0.00 0.00 39.30 3.59
1773 8570 5.463392 GGAGTGAAAGAAAACAAAATCAGCC 59.537 40.000 0.00 0.00 0.00 4.85
1820 8617 9.649024 AATGTTTTGTATTCTTGCAAAATTTCG 57.351 25.926 0.00 0.00 45.19 3.46
1893 8699 1.134280 CACCCGAGATCAAATGCTCCT 60.134 52.381 0.00 0.00 0.00 3.69
1956 8763 3.864789 ATATGATCACACTTCACCCCC 57.135 47.619 0.00 0.00 0.00 5.40
1957 8764 4.580580 GGAAATATGATCACACTTCACCCC 59.419 45.833 0.00 0.00 0.00 4.95
2017 8824 5.105716 ACTCAGCTCAGCTTTTCGATAACTA 60.106 40.000 0.00 0.00 36.40 2.24
2077 8884 2.526126 TTGCCATTGCCCTGCCAA 60.526 55.556 0.00 0.00 36.33 4.52
2082 8889 5.018809 CCTATATATTGTTGCCATTGCCCT 58.981 41.667 0.00 0.00 36.33 5.19
2091 8898 4.332819 GCCATCCGTCCTATATATTGTTGC 59.667 45.833 0.00 0.00 0.00 4.17
2100 8907 2.472695 GCATTGCCATCCGTCCTATA 57.527 50.000 0.00 0.00 0.00 1.31
2101 8908 3.329300 GCATTGCCATCCGTCCTAT 57.671 52.632 0.00 0.00 0.00 2.57
2102 8909 4.876701 GCATTGCCATCCGTCCTA 57.123 55.556 0.00 0.00 0.00 2.94
2113 8920 2.799176 CCAACCTCCTAGGCATTGC 58.201 57.895 2.96 0.00 39.63 3.56
2173 8980 3.531538 GCCTTTCAATCTACATCGACCA 58.468 45.455 0.00 0.00 0.00 4.02
2268 9093 1.229951 TCCATGCTTCCCTCCCACT 60.230 57.895 0.00 0.00 0.00 4.00
2273 9098 0.615331 TCTGTGTCCATGCTTCCCTC 59.385 55.000 0.00 0.00 0.00 4.30
2321 9146 2.439409 TCTTGACACCATGGAAGCATG 58.561 47.619 21.47 8.39 0.00 4.06
2387 9212 5.483231 TGTATCAAATTCATTTTCCAGGGCA 59.517 36.000 0.00 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.