>input_sequence_80424
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-------------------------------------------------------------------------ATGGCGT
ACGCTAAGCTCGCAGCCCTGGCCATGCTCGTGCTCCTACT---GCAGGCGTCAACCGGCACCGCTGCCCGCTCGCCGCCG
GCCGTTTCGACCTCCAAGATCGACGGCATGCCGGGGGTGATGACGGTCAACGGGTTCGAGCGCGGCGAGGACGGCGGCGG
GCCGGCGGAGTGCGACGGCAAGTACCACAGCGACGATGACATGCTGGTGGCGCTGCCGACGGGGTTATACCAGGGCGGGG
CCCGGTGCTTCAAGATGATCCGCATCACCAGCGCGGGCACCGGGCCGAGCGTGGAGGCCATGGTGGTGGACGAGTGCGAC
TCCAGGAAGGGCTGCAAGAACAACATCGTCGACACCTCCAAGGCCGTGTGGAAGGCCCTCGGGCTCGACACCAACGTCGG
CGAGGTGCCCGTCACTTGGTCCGACGTCTGA-------------------------------------------------
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>chr3D_1_TraesCS3D01G075200
ATCATTGATCGAGCGATGACGATGCTTGTGCTCTGTTCCCTTCTTGGAGGCATCGTGTTTGGAGAAACCCCTTTGCGGTC
CGGGTGCTATCTTTGGTGGTGGTTAGTCTACTGCTGCGAGTGATTGATCACTGTGGCAGGGCTTTTTCCTTTTTCTTTTC
TCTCTCTTTTTGGCTGTATATATGCATCCTCAATCTTCAGTTGGTCATTTTGTCGGTGCAGAGGCTGGGTGTCATTAGTA
TCTTCACGATATTAATATTTGTCGAGAAAAATATGTCGGTTTGCCTATATTTTATAGTCATCGTTTGGTGGTCGACGGAT
TTAGATGTAATTTTTATTATTTCTGATGTTCGTTGGACTACCATAATTAAAGATGAATAGATCGAAAATTTTCCAGAAAA
TAAAAACCTAAACAAAGTAGGTGGGCTG---TTTTTTCGCGAATCGACAACAAAGTAGCCT-------------------
--------------------AGCTTGAAATGTTTTCTCTACACATCTCAATCAACTCTGACACGTATTGTTTAAAATACT
ATTGGCTCAAAGCGAACTTCCATAAGTGGCATTCTACTAATGGAGCACACTTGATTACACTAACAGAGCTGCATACTAC-
---TACTGATGCTCATTTTAGAAGTAAAATTTGTCTTACACG----GAGCAATAGAATCACTATCAACTCCGCCACGGGC
GACCTGCTCAGTTGTCACTGGCTCTGGAATTACCGCTCTAA---------------------------------------
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------------------------------------------------CACTT-----CACCATGAAATCCAAACG----
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-----------------------------------------CGTCGTCATTACACAAGCACA---AGTGACCCCAAAACA
AGCCGTTAATTAATCCCATATCGACCACACCGGCCGGGAATAGAGAATAGACTAGCCAGTGGCGCGGTTCTGA-AACAAG
AACCAATGCAAGAAAAGACAGCGGTGCACACGAGACAGCGATGGTTTTCCATATAAACCGCCAGAATCCAACGCCATGAG
CACC-CCACGAGCAAGCCGATCCAGCGCATGCAAGCCTAAGCGATCGAGCAGGAGCTT-ACTTCGGCTTAGCAATGGCGT
ACGCTAAGCTCGCAGCCCTGGCCATGCTCGTGCTCCTACT---GCAGGCGTCAACCGGCACCGCTGCCCGCTCGCCGCCG
GCCGTTTCGACCTCCAAGATCGACGGCATGCCGGGGGTGATGACGGTCAACGGGTTCGAGCGCGGCGAGGACGGCGGCGG
GCCGGCGGAGTGCGACGGCAAGTACCACAGCGACGATGACATGCTGGTGGCGCTGCCGACGGGGTTATACCAGGGCGGGG
CCCGGTGCTTCAAGATGATCCGCATCACCAGCGCGGGCACCGGGCCGAGCGTGGAGGCCATGGTGGTGGACGAGTGCGAC
TCCAGGAAGGGCTGCAAGAACAACATCGTCGACACCTCCAAGGCCGTGTGGAAGGCCCTCGGGCTCGACACCAACGTCGG
CGAGGTGCCCGTCACTTGGTCCGACGTCTGAGTTAACCGCGTCGGTACATCGGTCGCTGAATAATTGGCTGCAGCACGGC
G--------------------CGCAGCTGGGGGCATTCGCAAATCGCAATGTATCTTCTCTTTT-CTGTTTCTACAATTC
TACGTGCACCT-AGTATGTACGTATGTGTAATAAAACGGACATGGCGTATTTGCTCCGGAGCTCAAATGCTTCATGATGA
ACAGTAAAACTAAGATGAAT------------------TTTTTTATGGTAAAGTTTGACAAATGTTTTGTATGCTTGCAA
AATTTCAGCGCGAAATGACATTCGTGAAAGTCGTGGCAGAAAAACAAAATCGATGTTCCAAAAATGCTAGTTTTGAAAAT
ATTTTGGAGGGCTGATTTTGTTTTCTTTCACTCCTTAAATGAATGCCATTTCGTGCCGAAATTTTGCAAGAATACAAAAC
ATTTGCCAAAGTTTACGACAAAAAAATTCAGGTT-----TTT----TACTGTTCATCAAGGAGCATTTGATCTCGGGTGC
AGAATAGTACTTTCAAAA-CGAGGTGTTCTTCCTCAAGATCGGGGGGTGAAGTGTGATCATATTTCCTACAATGTATGCA
TGCAAGGATATGTAAGATCAATCTAGTTATCGAAAAGCTGAGCTGAGTAAAAAAATTCTAAGCATTTGCGGGTGGGGTTT
CGGTTGGCAGGGCAATGGCAACAATATATAGGACGGATGGCAATGCCTAGGAGGTTGGCAGCATATAGATGAGTCACCGA
GCGCAATGTAGGTTTGCGATGGTCGATGTAGATTGAAAGGCGAAACTCATTCTCCATGATGGATGGTTCGATTGATTTTG
TTCGTCCTAATGGATTCTCATA------------------TTGATTTGAACAAGTGGGAGGGAAGCATGGACACAGAGAA
AAGGATTTGTGAACGCATCTTGTGCCATGCTTCCATGGTGTCAAGAAGCATCTCTGCATGGTTGGAACTTTTTAATGCAT
GAAAGCCGAGATGCCCTGGAAAATGAATTTGATACAGTCTCTTTTTTAGCTATTGATTT
>chr3A_199
ACCTG---------------------------------------------------------------------------
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----------AACAAAGTTGGTGGGCTATTTTT--TTCGCGAATCCACAACAAAGTAGCTAGCTAGCTTGAAATG-----
-------------------------------TTTTCTATACACATCTCATTCAACTCTGACACGTATTGATTACAACACT
GCTGGTTCAAAGCGAACTTCCTTAAGTTG--------------AG--TACTTGATTATATTAACGGAGCTGCATCCTAGT
ACTTACTGATGCTCATTTTTGAAGTAAATTTTGTCTTACACGTA----GCAATAGAATCACTATCAACTCCGCCACGGGC
GACCTGCTCAGTTGCCACTCGCTCTGGAATTACCGCTCCAA---------------------------------------
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------------------------------------------------CACTCAGCGACACCATCAAATCCAAACGCATC
GTCATTACACAAGCACAAAGTGACCCCAAAACAAGCCGTTAATTAGTCCCATATATCGAGCACACCGACCGATGCAAGAA
CCAATGCAAGAAAGACAGCGATTGTTGTCTATATAAACCGCCGGAATTCAACGCCATAAGCACCCCACGAGCAAGCCGAT
CTAGCGCATGCAAGCATAGCTAAGCGAGCAGGAGCATACTTAGGAGGCTTAGCAATGGCGTACGGCAAGCTCGCAGCCCT
GGCCGTGCTCGTGGTCCTACTGCAGGCGTCGACCCGCGCCGTCGCCCGCTCGTCGCCGGACGTTTCGACGTCCAAGGTCG
ACGGCATGCCGGGGGTGATGACGGTCAACGGGTTCGAGCGCGGCGAGGACGGCGGGGGGCCGTCGGAGTGCGACGGCAAG
TACCACAGCGATGATGACATGCTGGTGGCGCTGCCGACGGGGTTGTACCAGGGCGGGGCCCGGTGCTTCAAGATGATCCG
CATCACCAGCGCGAGCACGGGGCGGAGCGCGGAGGCCATGGTGGTGGACGAGTGCGACTCCAGGAAGGGCTGCAAGGACA
ACATCGTCGACACCTCCAAGGCCGTATGGAAGGCGCTCGGGCTCGACACCAACGTCGGTGAGGTGCCCGTCACATGGTCC
GACGCCTGAGTTAGGCGCGTCCATCGGTCGGCCGTTGAATAATTGGCTGCACATGGTAGCTGGGGGCATTCGCGAATCGC
AATGTCTGTCTGTTTTCTCTTTCTACGTGCACCTAGTATGTACGTATGCGTAATAAGACGAGGTTTTCTTCCTCAAGATC
GACGGGTGAAGTGCGATCATATTTCCTACTACAGTGTATGCATGCAAGGAGATGTAAAATCAATCCAGTTATCGAAAAGC
TGAGCTGATTTTAAGATCAATCCAACATGCAAGGATATTATGCGCAAATTTTGCCATTTCTTATTTTTATTTTATTCTGA
AAGGGTACCAATGTCACTAATTCATTCTTTCTTCAAAAACTTAAATTTTTTTAGTTTTTTCATTCTTTTTTAAGTGTAAT
ATCAACGCTACTAATATATTCTTTCTTAAAAAATTCACTTTTTCCTAAATTTCACTATTACATGTTTATTTTTGCATATT
ATAAAAAGCAATATTTATGTGTAAATTGTGTGCAATTTTTTCCATTTTAATTTTTTTCCTTTAGAACCAGGGTTAATACC
AATGCCACTAATTGAGTACTTCTTAGGAAACTTAATTTTAGTGGCATTCCACTAGTATATGCATATTCTTGCATGTTATT
AAAAAATCAATTCATGTTTAAACTATGTGCAAATTTTGTCAATGTTTATTTAAAAATTTATTTTACTTTTTCTTAAAGTG
TAATATCAATGTCACCAATTCATTCTTACTTGGAAAACTTTATTGTTCGTTTCTATTTATTTATATTTTTGTTTATCTCT
AATCTTATAAAAAACCGAGTTGGTGATGATGGTGTGCCTGCCATTTTGCAATATAGGCCATCCGGTCTATATTTGAGGGA
TAGAAAACAAACTATGACAATTTTGTAAAAAGATACCCGCACCTCTCTTCACATTTGCAGATACCCGCAACCTTATTGTC
GAGCAATTAAAAAGGAAAGCCTCTGGAACAATATGGCATGGTGGCCGCTGCCGGCGTCGTCCATCCCCATGCCTCCGCTC
AGTTCGACCACCAATCACCACCACGTCCCACTCCTCCTCACCTTATCTCTCCGAAACTACTCTACACACGATATTCACAC
GCACGATGTGTAGACGACAGGTAATCAAACGACTGTGCTGCAACTTGATCTTGTCATGGACGGTTTGATGACCTGTGTCG
TCCAAGAGTCGGCCAAGAAATGTCGTTTGCCTAGCAACGCTGTTATCTCTCCTATTTCTCGGGATATCATTAATTTTTAC
ACATGAAATTATTCCCGCATGGGTCAATCACAACAGGTGTTTTATAAAAAAAAATGCATCTTGATGTTCCGTGCAATGCA
CGGGCATCTTGCTAGTTTATTCTTTATAGGTGACTGACCCATTTTCTTCTTTTGGTTATTAGGTTAACAACTCATAGAAA
TGTGTACCATTGTTATTAAAAAGAAACTGTGATATTCTAAGTAAAATGTGTATTATGCTAATAAGTAACAAAAAATAATA
TGATATTTTCTTGGTTAGTGTGTATTCCAACAATTTTAGTTTCACATAATATTTCATGAATGTCTAGTTGGACATTTTGT
CGATGCAGAGGCTGGGTGTCATTAGTATCTTTACGGTATTAATATTTGTAAAATATGTTGGTTTGCCTATATTTTATAGT
CATTGCTTGGTGGTGTACGAGTTTACATGTAATTTTTATTATTTCTGACGTTCGTTGCACTACCATGATTAAAGATGAAT
GGATCAAAAAAATTCCAGAAAATAAAAACCTAGACAAAGCAGGTGGGCTGTTTTTAGGCGAATCGACAACAAAGTAGCCT
CGCTTGAAATGTTTTCTCTACACATCTCAATCAACTCTGAACGTACTGATTACAATACTATTGGTTCAAAGCGAACTTCC
GTAAGTGGCATTCTACTACCGGGGCACTTGATTATATTAACAGAGCTGCATACTACCACTGATGCTCATTTTAGAAGTGA
TTTTTGTCTTACACGGAGCAACAGAATCACTATCAACTCCGCCGCCACGGGCGACCTGCTCAGTTGCCACTCGCTCTGGA
ATTACCGCTCCAACACTTAGCGACACCATCAAATCCAAACGCATCGTCATTACACAAGCACA---AGTGACCCCAAAACA
AGCCGTTAATTAATCCCATATCGAGCACACCGGCCGGGAATAGA-------CTAGCCAGTGGCGCAGTTCTGA-AACAAG
AACCAATGCAAG-AAAGACAGCGGTGCACACGAGACAGTGATGGTTTTCTATATAAACCGCCGGAATCCAACGCCATGAG
CACC-CCACGAGCAAGCCGATCCAGCGCATGCAAGCCAAGCAAAACGAGCAGGAGCTT-ACTTCGGCTTAGCAATGGCGT
ACGCTAAGCTCGCAGCCCTGGCCATGCTCGTGGTCCTACT---GCAGGCGTCAACCGGCACCGCTGCCCGCTCGCCGCCG
GCCGTTTCAACCTCCAAGACGGACGGCATGCCAGCGGTGATGACAGTCAACGGGTTCGAGCGCGGCGAGGACGGCGGCGG
GCCGGCGGAGTGCGACGGCAAGTACCACAGCGACGACGACATGCTGGTGGCGCTGTCGACGGGGTTGTACCAGGGCGGGG
CCCGGTGCTTCAAGATGATCCGCATCACCAGCGCGGGCACGGGGCGGAGCGCGGAGGCCATGGTGGTGGACGAGTGCGAC
TCCAGGAAGGGATGCAAGAACAACATCGTCGACACCTCCAAGGCCGTGTGGAAGGCGCTCGGGCTCGACACCAACGTCGG
CGAGGTGCCCGTCACATGGTCCGACGTCTGAGTTAACCGTGTCGATCGGTCGGCTGCTGAATAATTGGTTGCT-------
-C---------------GCACGGCAGCTGTGGGCATTCGCAAATCGCAATGTCTCTTCTTTTTT-CTGTTTCTAGAATTC
TACGTGCACCT-AGTATGTACGTATGCGTAATAAAACGGACATGGCGTATTTGCTCCAGAGCTCAAATGCTTTCTGATAA
ACAGTAAAATAA-------------AAAATATTCTGAATTTTTTTTGGTAAACTTTGACAAATGTTTTGTATGCTTGCAA
ATTTTCAGCACGAAATGACAT-CGTGAAAGTTGTGACAAAAAAACAAAGTCGATGTTTCAAAAATG-------TGAAAAT
ATTTTGGAGTGCTGATTTT------TTTCACGCCTTAAATGAATGTCATTTTGTGCTGAAATTTTGCAAGAATACAAAAC
ATTTATCAAAGTTTACCAAAAA----TCAGTTTTTTTTAAAAAAAATACTGTTCATCAGGGAGCATTTGATCTTGGGTGC
AGAATAGTACTTTCGAAA-CGAGGTGTTCTTCCTCAAGATCGATGGGTGAAGTGTGATCATATTTCCTACAATGTATGCA
TACAAGGATATGTAAGATCAATCCAGTTACCGAAAAGCTGAGCTGAGTAAAAAAATTATAACCATGTGCGGGTGGGGTTT
CGGCTGGCGGGGCAATGACAACAATA----GGATGGATGACAATGCCTATGAGGTTGGCAGCATATAGATGAGTCACCGA
GCGCAATGTAGGTTTGCGACGGTCGATGTAGATTGAAAGGTGAAACTCGTTCTCCATGATGGATGGTTCGATCGATTTTG
TTCGTCTTAATGGATTCTCATA------------------TTGATTTGAACAGGTGGAAGGGAAGCATGGACATAGAGAA
AAGGATTTGTGAACGCATCTTGTGCAATGTTTCCATGGTTTCAAGAAGCATCTCTGCATGGTTGGAACTTTTTAATGCAT
GAAAGCCGAGAAGCCCTGGAAAATGAATTTGATA-AGTCTATTTTTTAGCCATTGATTT
>chr3B_412
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-----------ACAAAGTAGGTGGGGTATTTTTTTTTCGCGAATCGACAACAAAGTAGCTAGCCAGCTTGAAATGCTTTC
CCCCCCGCAAGAAAAGGAAAAGTTTGAAATGTTTTCTATACACATCTCAATCAACTCTGACACGTATTGATTACAATACT
AGAGGTTCAAAGCGAACTTCCTTAAGTTG--------------AG--TACTTGATTATATTAACAGAGCTGCATCCTAGT
ACTTACTGATGCTCATTTTAGAAGTAAAATTTGTCTTACACGTACGGAGCGATAGAATCACTATCAACTCCGCCACGGGC
GACCTGCTCAGTTGCCATTCGCTCGGGTTTTACCGCTCCAA---------------------------------------
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------------------------------------------------CACTCAGCGACACCATCAAATCCAAACG----
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-----------------------------------------CGTCGTCATTACACAAGCACA---AGTGACCCCAAAACA
AGACGTTAATTAATCCCATATCGAGCACACCGGCCGGGAATAGA-------CTAGCCAGTGACGCAGTTCCGA-AACAAG
AACCAATGCAAG-AAAGACAGCGGTGCACACGAGACAGCGATGGTTGTCTATATAAACCGCCGGAATCCAACGCCATAAG
CAGCACCACGAGCAAGCCGATCCAGCGCATGCAAGCCTAAGCGA----GCAGGAGCTTCACATAGGCTTAGCAATGGCGT
ACGCTAAGCTCGCAGCCCTGGCCGTGCTCGTGGTCCTACT---GTGGGCGTCAACCGGCACCGTGGCCCGCTCGTCGCCG
GCCGTTTCGACGTCCAAGGTCGACGGCATGCCGGCGGTGATGACGGTCAACGGGTTCGAGCGCGGCGAGGACGGCAGCGG
GCCGGCGGAGTGCGACGGCAAGTACCACAGCGACGACGACATGCTGGTGGCGCTGTCGACGGGGTTGTACCAGGGCGGGG
CCCGGTGCTTCAAGATGATCCGCATCACCAGCGCGGGCACCGGGCGGAGCGTGCAGGCCATGGTGGTGGACGAGTGCGAC
TCCAGGAAGGGCTGCAAGAACAACATCGTCGACACCTCCAAGGCCGTGTGGAAGGCGCTCGGGCTCGACACCAACGTCGG
CGAGGTGCCCGTCACATGGTCCGACGCCTGAGTTAAACGTGTCGATCGGTCGGCCGTTGAATAATTGGCTGCGCGTGAGC
GC---------------GCACGGCAGCTGGGGGCATTCAAAAATGCCAATGTCTCTTCTGTTTT-CTGTTTCTACAATTC
TACGTGCACCTAAGTATGTACGTATGCGTAATAAAACGGACATGGTGTGTTTGCTCCCGAGCTCAAATGCTTCCTGACAG
TAAAGAAAAAATATCAAAACATTTCAAAAGATTTTGATTATTTTTTGGTAAACTTTAACAAATGTTTTGTATTCTTGCAA
AATTTCAGCACGAAATGACATTCGTGAAAGTCGTGGCAAGAAAACAAAGTTGATGTTCCAAAAATGCTAGTTTTGAAAAT
ATTTTGGAGTGCTGATTTTGTTTTCTTTCACTCCTTAAATCACAGTCATTTCGTGCTGAAATTTTGCAAGAGTACAAAAC
ATTTGTCAAAGTTTACCAAAAAAAATTCAGATTTTTTTATTT----TACTGTTCACCAGGGAACA-TTGATCTCGGGTGC
AAAATAGTACTTTCGAAAACGAGGTTTTCTTTCTCAAGATCGATGGGTGAAGTGTGATCATAATTCCTAGAATGTATGCA
TGCAAGGATATGTAAGATCAATCCAGTTATCAAGAAGCTGAGCTGAGTAAAAAGAATCTAAGTATTTGCGGGTGGGTTTT
GGGCTGGCGGGGCAATGACAACAATA----GGACGGATGACAATGCCTAGGAGGTTGGCAGCATATAAGTGAGTCACCGA
GCTCAATGTAGGTTTGCGACGGTCGGTGTAGATTGAAAGGCGAAACTCATTCTCCATGATGGATGGTTCGATCAATATTG
TTCGTCTCAATGGATTCTCATATTTGATATTACGAAAACCTTGATTTGAACAGGTGGAAGGGAAGCATGGACACGGAGAA
AAGGATTTGTGAACGCATCTTGGGCAATGCTTCCATGGTGTCAAAAAGCATCTCTGCATGGTTGGAACTTCGTAATGGAT
GAAAGCCGAGAAGCCCTGG----------------------------------------
>chr3D_453
TAGCT---------------------------------------------------------------------------
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--------------------AGCTTGAAATGTTTTTCTTTACGCATCGCCTCAACTCTGATACGTATTGATTACAATACT
ATTGGTTCAAAGCGAACTTCCGTAAGTTGCATTCTACTACTGGAG--CACTTGATTATATTAACAGAGCTGCATATATAC
TACCACTGATGCTCATTCGAGAAGTAATTTTCGTCTTACACGTACGGAGTAATAGAATCACTGTCAACTCCGCCACGGGC
GACCTGCTCAGTTGCCATTCGCTCTGGAATTACCGCTCCAA---------------------------------------
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------------------------------------------------CACTTAGCGACACCATCAAATCCAAACG----
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-----------------------------------------CATCGTCATTACACAAGCACA---AGTGACCCCAAAACA
AGCCGTTAATTAATCCCATATCGAGCACACCGGCCGGGAATAGA-------CTAGCCAGTGACGCAGTTCCGA-AACAAG
AACCAATGCAAG-AAAGACAGCGGTGCACACGAGACAGTGATGGTTGTCTATATAAACCGCCGGAATCCAACGCCATAAG
CACC-CCACGAGCAAGCCGATCCAGCGCATGCAAGCCTAAGCGA----GCAAGAGCTTCACATAGGCTTAGCAATGGCGT
ACGCCAAGCTCGCAGCCCTGGCCGTGCTCGTGGTCCTACT---GTGGGCGTCAACCGGCACCGTCGCCCGCTCGTCGCCG
GCCGTTTCGACGTCCAAGGTCGACGGCATGCCGGGGGTGATGACGGTCAACGGGTTCGAGCGCGGCGAGGACGGCGGCGG
GCCGGCGGAGTGCGACGGCAAGTTCCACAGCGACGACGACATGCTGGTGGCGCTGCCGACGGGGTTGTACCAGGGCGGGG
CCCGGTGCTTCAAGATGATCCGCATCACCAGCGCGGGCACCGGGCGGAGCGTGGAGGCCGTGGTGGTGGACGAGTGCGAC
TCCAGGAAGGGCTGCAAGAACAACATCGTCGACACCTCCAAGGCCGTGTGGAAGGCGCTTGGGCTCGACACCAACGTCGG
CGAGGTGCCCGTCACATGGTCCGACGTCTGAGTTAACCGCGCG--TCGGTCGATCGCTGAATAATTGG------------
-C----------------------AGCTGTGGGCATTCGCAAATCGAAATGTCTGTTCTGTTTT-CTGTTTCTACG----
----TGCACCT-AGTATGGACGTATGCGTAATAAG---------------------------------------------
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------------------ACGAGGTTTTCTGCCGCAAGGTCGACGGGTGAAGTGTGATCATATTTCCTACAATGTATGAA
TGCAAGGATATGTAAGATCAATCCAGTTATCGAAAAGCTGAGTTGAGT--------------------------------
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>chr1A_648
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---------------------------------------------------------TCACTATCAACTCCGCCACGGGC
GACCTGCTCAGTTGCCATTCACTCGGGTATTACAGCTACTAGATGAACAGTTGCGCCCAGGGCGCAAAGGCCGAGAGCAA
GCCAAATATTGAAAGAGTGTGCATCAAAATATGTAGACACAGAAGGAAACATATGGAAGTAAGTACGGATTGATGATAGT
CATACGGACATGATTATCATATTTTTTACATAAGATCCAAAATGATGCTAGATATAAAAGTCTCGATAGAAAATCAAACC
ACTTCAAATAAAAAAATACTCTTCTGAAATTGTGCTCCTCTTAGAACATACACACTTCATGTGCATATGGTTGCAGGTTG
TATCCATGCCAAGATAGCACCTTGTATGCATAAGATGGACCATATGTTGAATATACGAACACTGACTACTGTACCCTGCA
CCTGTGCATTGTCAAACTGTACCCTGCACCTGTGCATGATAGATGGTTGGCCATTGTCAAACTGTCCAGAACTAATGAAT
GGAACTAAAAATCTTAGCTAAAGCAAAGCTTCTAGGCGTGTGATAAAAATAAAATGGAATGAAATATATCATAACGAAAC
TTCATATGTGAAGATGGCAGTGTCACTCTTCTCGTGTCCATCCTCCCTCACTACCTGCAAAACTATAAAATGAGGACATA
TCATGACAACAGTTTGAGGTCATCTCTCCCCACTGAACATAACTTAAATGACACTGAACACTACTCAAAACCAAGATGAT
ATGTACCAACAATCACTTAAAAATGGTTGAATAATAAAATTATGTAGGTCCTAGTTTACAATTGTGAGCTTACAGAAATC
ACAAAAATGCTTTGAACTGTAGGTTTTAGTTTTTCACACCAAAATCCGAACGCGCGCACGCGCGAAAAGAGGCAGAAAGA
TAGGGAGGTTACCCATGAAAGCAGAGAAGCTGCTATCATGGCCACCTATGGATGATCCAAAATCTGAAGAAAACATATTG
TTGGTCAAACTGAAAATAACTAAAAGGTTCAAAATATTGAGAAAGAGGAGTAACTATAACACAGACTGACCAATTAAACA
AGGATTTTAGACTGAAAAACAAAATGATACAAGACTCAAACAGGAATACTAAAATTGCTGCATAGATTAAATCAACTACA
TGACTGAAAAATAAACTGAATATCTGATTACAATATCATGAGATGGGAAGAAGCAAATCCAATTAAACAAATCTGATATA
ATTAAGCCTGGTTACACCAAAACATAATTAACTTCTTTCAAAAGCAATCAGCCAGTTTAACTATTTGGCCATACCTTTCT
GTCTCCTCTAGCATATCCAAAGTAGAGAATGACAACGGTAATAGATCGCGCTGAGGCCCGCTGACATGCATCAATCATGA
TGAAGAGCTCCATGAGGTTCTCATTGACAGGAGAGCAAGACGCAAGAACAGATCACATCAGCTAAACATACATGGGCATA
CCTATTGGAAAGGAGGGAGGAAGGGACATGTGACGGAGTGGAACCTGGAGGTGCAGGGGCACGAATCCTGCCTGCAATGA
CACGGTTGCTGCCAGCTTACATGAGAAAATATGCGGCCAGTTTGGCAGTAATTGCCTCACGTCCTTGAGCCTGCATTACA
AAAGAAATAAGTCAGCACAGCAAATTTCCACACATCACACAAAGGGGGCAGCACATATTCCCCAATTGAGGGCAATATTC
AACTTTAAACTCCTCCCCCTTTAAACATCTGACTGGGCGGTATTAAGTTCGCCAAAGAATGATCAAATAAGGTATCCATA
ATAGAACAAGTCCTCGGAATAGAAGAACCAGCAGCACAAGAAGTAAATACACTACACTAATAGAAATCTTTACAAGGAAA
ACCTCAGTATGTGGATATCACATTCAGTTGCATTGACACAGGAAACAAATTGAAAAGGCATTAGATATCTTTTTTCATTG
AACGGGCATGTAATTAGATATCATGAGATGGGAAGAAGCAAATCCAGTTAAACAAATCTGATATAATTCAGCCTAGTTAC
ACCAAAACTTAATTAACTTCGTTCAAAAGCACTGATATAAACATGAATACATTGAGTAAGATAATTTTTTTAGTGCTAAC
TCAAGTAGGATCTAAAGGAATACCCCACCATAGGTAACTTGGTCAGCCTTAGGCTTGTCTACTTCAGTGCCCATTTGAAA
GGAACTCAACAAAGAATTTCACAGTTTGTCAACGCCTGCAAGAAAAAAATGGAATGGCCTAAATGGCAACAACACTTGAA
TGAGCATAATCAGGCAGATAAATATATAAATATGTTGAATGAGAAAAATTGTTATGGATGTTGGGAGCTCATGCAATGTA
TACATTAGAGTGAGAGTATGCTAATCAACATATAAAATTCCTGCAAATAGTATATATATGGTAACACATCATGAAACACA
TGACACGCTTTATTCACCAGCCATCTTGATGTAGTGATGGTCATCAGTTCAAGAAACATGAGTACATCATAATTTATCTC
GTGTAAATATAAATTCCCCAACCTTCATAATATCATACACCGGAAGAAATTGAGAGTATCACATTAGAACCAACTTTATT
TATATCTACAGATCTGCCTACAAAAATGCCAAAGTAGCAAGATATTTGGCATGCATATCTCAGAAACCTTCTCTACACTC
CGAGGCCTTTTTTCTTAGCAGCCATTCACAAGTGCATCTAACCAGACTCGCAAGAATAGAAGTCCTTACTGCATTATATC
TACTTACAACCCGAGTGAAGGTCACTGATGTAAATCCTCATGGTCAGTAGCTTCCACCGATGATTTTTCTTCCTGATATG
AAGATGCTCTTCCTACAAAATATGAACACATCATAAGAAAACCTGATAAAAGCATAGGTCTAGTTATAAAATAAAAAATA
TATGTAAACTGAGTTCTACACGAGAAGCCATCCATCTTAATTCTCACAAAAAAATCAGAGAATCAAAGTAGCGGTCCTCT
CCTCCCCCTGCATCTGCATATGCATGGAGTTGAGTTAGTGATGCTGCACAAACAAATCGAAGAGGAACATCGTTGAAGGA
ATAATGGGAGGGAAGAAGAAGAGACTGAAGAGGAAAGCAATCCATGCTCCTCTTCAATCGTGAGGATGAAAAGCAGGACT
GCAGGCAGTGGGAAAAGCAAGCAAACCAAACCGAATCTTGAGGATGAGTCGCAGCTGTCCCGGCGCAAATCTGGCCGCCG
CCGCCATGGACTGCCTGCTGCTGGTCGGCCATGACCCACCCAACCTAGACCTAGAGAGGCGAGGAGAGGAGATGGGGGTC
AGAGAAAGAGCAGGAGAGAGAAAGGGAAGAGAAGGGGACCATACCGCCGTTGTCGCCGTCTGTCACCATGGTCGGGGGGC
AGCGACCCCGGCTCCTCCTATTGAGCACGGAAGTAGAAGGAGGAGATGAGGAGACGCGGGAGGAGGAGAGGCAGGGAAGG
AGGAGGTGGTGGAGGCGGCGGCGGCGGTGGCGGCAGGAGAGGAGGCGGAGGCGGTTGCGAGGGCGCCGGCTAGGTCGCTG
CCCTCACGTTGTTAGGTCTGCTTTTCTGTCGCTGCTCGCTCGCCCCACTTCGCTTTTTCTCTCTCGCTACTCGCGCGCTC
GCTCGCTGCTCTTTTCGCTCCGCACTATTCATAGCCGACGTAAAGCCATTTGTTGCGTCTAGCATCCCTTTCATCTTTTA
TAAGTTCGCACTATTCATAACCGACGTGAAGTCATCCGTTGCGTCTAGCACCCCTTTCATCCTTTATAAGTTCGCACTAT
TCATAGCCGACGTGGAGCCATCCGTTGCGTCTAACACCCCTTTCATCCTTTATAAGTTCAATTATAAGTTCGCACTATTC
ATAGCCGACGTGGAGTCATCCGTTGCGTCTAGCACCCCTTTCATCCTTTATAAGTTCGCATTATTCATAGCCGATGTAGA
GCCATCCGTTGCGTCTAGCACCCCTTTCATCAATTATAAGTTCAATAGCACTTAGCGACACCATCAAATCCAAACG----
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-----------------------------------------CATCGTTTGTACACAAGCAGAAGTAGTGACCCCAAAACA
AGCCGTTAATTAAACCCATTTCGAGCACGCCGTCGTGGGTAAATAATGGGAATAAGCTAAGTGACACATTGCTGAACAAG
AACCAATACAAG-AAAGACAGCGGTGCACACGAGACAGCGATGGTTGTCTATATAAACCGCTCGAACCCAACGCCATAAG
CACC-CCAAGATCGAGCAAGTCTAGCGCACGCAAGCCTAAGCGA----TCAGGAGCTT-ACCAAGGCTTAGCAATGGCGT
ACGCTAAGCTCGCAGCCCTGGCCATGCTTTTAGTCGTG---CTGCAGGCATCAACCGGCACCGTCGCCCGCTTGTCGCCG
GCCGTCTCGACGTCGAAGCTCTCCGGCATGCCGGCGGTGATGACAGTCAACGGGTTCGAGCCCGGCGAGGACGGCGGCGG
GCCGGCGGAGTGCGATGGCAAGTACCACAGCGACGACGACATGCTGGTAGCGTTGTCGACGGGGTGGTACCAGGGCGGGG
TCCGGTGCTTTAGGATGATCCGCATCACGAGCGCGGGCACCGGGCGGAGCGTGGAGGCCATGGTGGTGGACGAGTGCGAC
TCCCGGCGCGGCTGCAAGAACAGCATCGTCGACACCTCCAAAGCCGTGTGGAAGGCGCTCGGGCTGGACACCAACGTCGG
CGAGGAGACCGTCACATGGTCCGACGCCTGAATTAACCCC-TCGATCCGTCGGTCGCTGAATAATTGG------------
-C---------------GCACGGCAGCTGGGGGCATCCGCAAACTGCAACGTCTGCTCTGTTTTTCTGTTTCTA------
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>chr1A_881
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-------------------------------GAGACAGCGATAGTTGTCTATATAAACCGCTCGAATCAAACGCCATAAG
CACC-CCACGAGCAAGTCTAGCGCATGCAAGGCAGCCGAAGCAGGA---CAGGAGCTT-ACTTAGGCTTAGAAATGGAGC
ACGCTAGCCTCGCAGCCCTGGGCGTGCTCGTGGTCCTACTACTGCAGGCGTCAACCGGCACCGTGGCCCGCTCGTCGTCG
GCCGTGGCGGCGTCTAAGGTCTTTGGCATGCCGGCGGTGATGTCGGTCAACGGGTTCGAGCGCGGCGAGGACGGCGGCCC
GCCGGCGGAGTGCGACGGCAAGTACCACAGCGACGACGACATGCTGGCGGCGCTGTCCACGGAGTGGTACGAGGGCGGGA
TCCGGTGCTTCAGGACGATCCGCATCACGAGGGCGGACAACGGGCAGAGCGTGCTGGCCACGGTGGTGGACGAGTGCGAC
ACCGCGCACGGCTGCAAGAACAACGTCGTGAACACCTCCAGAGGCGTGTGGAACGCGCTCGGGCTCGGCACCATCGTCGG
CGAAGTGGCCGTCACATGGTCAGACTCCTAAGTTAACCGCGCCGATCCATC-GTCGCTGAATAATTGG------------
-CTGCGCGTGCGCGCGC--AACGCCGCTGCGGGCATTTGCAAATCGCAATGTCTGTTTTGTTTC-CTGTTTTTACA----
----TACACGT-ACGTGC--------------------------------------------------------------
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>chr1D_881
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-------------------------------GAGACAGCGATAGTTGTCTATATAATCCGCTGGAATCAAACGCCATAAG
CACC-CCACAAGCAAGTCTAGCGCATGCAAGGCAGCCGAAGCAGGA--------GCTT-ACTTAGCCCAAGCAATGGCGC
ACGCCAGCCTCGCAGCCCTGGGCGTGCTCGTGGTCCTACTACTGCAGGCGTCAACCGGCACCGTCGCCCGCTCGTCGTCG
GCCGTGTCGGCGTCTAAGGTCTATGGCATGCCGGCGGTGATGTCGGTCAACGGGTTCAAGCGCGGCGAGGACGGCGGCCC
GCCGGCGGAGTGCGACGGCAAGTACCACAGCGACGACGACATGCTGGCGGCGCTGTCCACGGAGTGGTACCAGGGTGGGA
TCCGGTGCTTCAGGACGATCCGCATCACGAGGGCGGACAACGGGCAGAGCGTGCTGGCCACGGTGGTGGACGAGTGCGAC
ACCGCGCACGGCTGCAAGAACAACGTCGTGAACACCTCCAGAGGCGTGTGGAACGCGCTCGGGCTCGGCACCATCGTCGG
CGAGGTGGCCGTCACATGGTCAGACTCCTGAGTTAACCGCGCCGATCCGTCGCTCGCTGAATAATTGG------------
-CTGCGCGTCCGCGCGCGCGCAGCAGCTGCGGGCATTCGCAAATCGCAGTGCCTGTTCTGTTTC-CTGTTTTTACA----
----TACACGT-ACGTGC--------------------------------------------------------------
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>chr1A_882
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--------------------------------AGACAGCGATGGTTGTCTATATAAACCGCTCGAATCAAACGCCATAAG
CACC-CCACGAGCAAGTCTAGCGCATGCAAGGCAGCCGAAGCAGGA--------GCTT-ACTTGGGCTAAGCAATGGCGC
ACGCTAGCCTCGCAGCCCTGGGCGTGCTCGTGGTCCTACTACTGCAGGCATCAACCGGCACCGTCGCCCGCCCGTCGTCG
GCCGTGTCGGCGTCTAAGGTCTTCGGCATGCCGGCGGTGATGTCACTCAACGGGTTCGAGCGCGGCGAGGACGGCGGCCC
GCCGGCGGAGTGCGACGGCAAGTACCACAGCGACGACGACATGCTGGCGGCGCTGTCCACGGAGTGGTACCAAGGCGGGA
TCCGGTGCTTCAGGACGATCCGCATCACGAGGGCGGACAACGGGCAGAGCGTGCTGGCCAGGGTGGTGGACGAGTGCGAC
ACCGCGCACGGCTGCAAGAACAACATCGTGGACACCTCCAGAGCCGTGTGGGCGGCGCTCGGGCTCGACACCAACGTCGG
CGAGGTGTCCGTCACATGGTCAGACTCCTGAGTTAACCACGCCGATCCGTCGGTCGCTGAATAATTGG------------
-CTGCGCGTGCACGCA--------CGCTGTGGGCATTCGCAAATCGCAATGCCTGTTTTGTTTC-CTGTTTTTACA----
----TACACGT-ACGTGC--------------------------------------------------------------
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>chr1D_882
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--------------------------------AGACAGCGATGGTTGTCTATATAAACCGCTCGAATCAAACGCCATAAG
CACC-CCACGAGCAAGTCTAGCGCATGCAAGGCAGCCGAAGCAGGA--------GCTT-ACTTGGGCTAAGCAATGGCGC
ACGCTAGCCTCGCAGCCCTGGGCGTGCTCGTGGTCCTACTACTGCAGGCGTCAACCGGCACCGTGGCCCGCTCGTCGTCG
GCCGTGTCAGCGTCTAAGGTCTTTGGCATGCCGGCGGTGATGTCACTCAACGGGTTCGAGCGCGGCGAGGACGGCGGCCC
GCCGGCGGAATGCGACGGCAAGTACCACAGCGACGACGACATGCTGGCGGCGCTGTCCACGGAGTGGTACCAGGGCGGGA
TCCGGTGCTTCAGGACGATCCGCATCACGAGGGCGGACAACGGGCAGAGCGTGCTGGCCACGGTGGTGGACGAGTGCGAC
ACCGCGCACGGCTGCAAGAACAACATCGTGGACACCTCCAGAGCCGTGTGGGCGGCGCTCGGGCTCGACACCAACGTCGG
CGAGGTGGCCGTCACATGGTCAGACTCCTGAGTGAACCGCGCCGATCCGTCGGTCGCTGAATAATTAG------------
-CTGCGCGTGCGCGCGCGCAACGCCGCTGCGGGCATTCGCAAATCGCAATGTCTGTTTTC-----CTGTTTTTACA----
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>SNPs
-S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS-----------------S-------------------------------SS-------------------
-------------------------------------S-------------------------------S---S------
-----S---------------S-----S-----------S-----SS----------S-S------------------S-
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--------------S----S------------------S-----------------------------------------
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----------------------------------------------------------------S---------------
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------------------------S-------------------S-SSS----------------S--------------
------------S------------------------------------S------------S-----------------
--------------------------------------------S-----------------------------------
--------------------------------S-----------------------------------------------
--------------------------------------------------------------------------------
------------------------------------S-----------------------------S-------------
---------------------------------------------S----------------------------------
--------------------------------------------------------S-----------------------
---------------S----------------------------S-S-------------------------SSSSSS--
----------------------------------------------------S---------------------------
--------------------------S------------------------------S---------------S----S-
---------SS--SSSS--S------------------------S-------S---------------------------
---------S----------------------------S---------S-------------------------------
---------S-----------------------------------S----------S-----------------------
-----S----------S-S------S-SSSSS--------------------------S---------------------
--------------S---------------------------SS------------------------------------
-----------------------S--------------------------------------------------------
---S----S--------S--------SSSS---------S----------------------------------------
-------------------S----------------------------------------------------S-------
------S---------------------------------------------S----S----------------------
-------------------------S------------------------------------------------------
-----------S----------------------S-----S---------S--------
>forward_27
-------ATCGAGCGATGACGATGCTT-----------------------------------------------------
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>reverse_8699
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----------------------------------------------------------AGGAGCATTTGATCTCGGGTG-
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