Multiple sequence alignment - TraesCS3D01G067200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G067200 chr3D 100.000 2905 0 0 1 2905 29801962 29799058 0.000000e+00 5365.0
1 TraesCS3D01G067200 chr3D 86.287 1247 69 50 387 1557 29813128 29811908 0.000000e+00 1262.0
2 TraesCS3D01G067200 chr3D 88.817 930 64 21 528 1449 29861998 29861101 0.000000e+00 1105.0
3 TraesCS3D01G067200 chr3D 93.194 720 35 7 2195 2905 29852994 29852280 0.000000e+00 1046.0
4 TraesCS3D01G067200 chr3D 89.776 714 47 8 662 1356 29790127 29789421 0.000000e+00 891.0
5 TraesCS3D01G067200 chr3D 81.648 910 96 32 502 1360 299744614 299745503 0.000000e+00 689.0
6 TraesCS3D01G067200 chr3D 87.686 471 14 23 1715 2151 29861049 29860589 2.580000e-140 508.0
7 TraesCS3D01G067200 chr3D 93.190 279 17 2 3 281 160797550 160797826 2.690000e-110 409.0
8 TraesCS3D01G067200 chr3D 92.908 282 19 1 1 281 374251542 374251261 2.690000e-110 409.0
9 TraesCS3D01G067200 chr3D 86.404 228 21 3 2681 2905 525920675 525920895 1.040000e-59 241.0
10 TraesCS3D01G067200 chr3D 87.562 201 20 4 2192 2388 29788706 29788507 8.100000e-56 228.0
11 TraesCS3D01G067200 chr3D 93.103 116 5 2 387 502 29790387 29790275 1.790000e-37 167.0
12 TraesCS3D01G067200 chr3D 98.462 65 1 0 1493 1557 29861106 29861042 6.580000e-22 115.0
13 TraesCS3D01G067200 chr3D 100.000 46 0 0 2148 2193 29799721 29799676 5.160000e-13 86.1
14 TraesCS3D01G067200 chr3D 100.000 46 0 0 2242 2287 29799815 29799770 5.160000e-13 86.1
15 TraesCS3D01G067200 chr3D 89.831 59 3 2 444 502 29862118 29862063 4.020000e-09 73.1
16 TraesCS3D01G067200 chr3D 95.455 44 2 0 2150 2193 29852946 29852903 1.440000e-08 71.3
17 TraesCS3D01G067200 chr3A 86.721 1348 84 47 277 1557 40390850 40389531 0.000000e+00 1410.0
18 TraesCS3D01G067200 chr3A 85.784 1020 75 33 502 1481 40556694 40555705 0.000000e+00 1016.0
19 TraesCS3D01G067200 chr3A 92.887 239 15 2 2192 2429 40389162 40388925 2.140000e-91 346.0
20 TraesCS3D01G067200 chr3A 91.228 114 8 2 390 502 40556837 40556725 1.390000e-33 154.0
21 TraesCS3D01G067200 chr3A 84.397 141 11 6 1833 1966 40389518 40389382 8.450000e-26 128.0
22 TraesCS3D01G067200 chr3B 90.531 961 42 23 1959 2905 50958543 50957618 0.000000e+00 1225.0
23 TraesCS3D01G067200 chr3B 83.347 1243 84 57 387 1557 50942457 50943648 0.000000e+00 1035.0
24 TraesCS3D01G067200 chr3B 87.810 886 64 21 517 1382 50654917 50654056 0.000000e+00 998.0
25 TraesCS3D01G067200 chr3B 88.452 788 49 17 683 1436 50959693 50958914 0.000000e+00 913.0
26 TraesCS3D01G067200 chr3B 95.276 254 7 2 1715 1966 50958818 50958568 5.830000e-107 398.0
27 TraesCS3D01G067200 chr3B 85.235 149 10 9 1827 1967 50943655 50943799 3.020000e-30 143.0
28 TraesCS3D01G067200 chr3B 86.087 115 7 2 1452 1557 50958925 50958811 6.580000e-22 115.0
29 TraesCS3D01G067200 chr3B 100.000 44 0 0 2150 2193 50958286 50958243 6.670000e-12 82.4
30 TraesCS3D01G067200 chr7B 89.762 713 53 9 680 1373 707946989 707946278 0.000000e+00 894.0
31 TraesCS3D01G067200 chr7B 86.740 181 14 7 513 683 707947449 707947269 2.950000e-45 193.0
32 TraesCS3D01G067200 chr7B 85.496 131 8 5 1433 1557 707946261 707946136 3.040000e-25 126.0
33 TraesCS3D01G067200 chr7B 97.561 41 1 0 1715 1755 707946143 707946103 1.440000e-08 71.3
34 TraesCS3D01G067200 chr4A 92.883 281 20 0 1 281 85588323 85588603 2.690000e-110 409.0
35 TraesCS3D01G067200 chr4A 88.321 137 12 4 1560 1694 433726675 433726541 8.330000e-36 161.0
36 TraesCS3D01G067200 chr4A 97.059 34 1 0 2430 2463 614006694 614006727 1.120000e-04 58.4
37 TraesCS3D01G067200 chr4D 92.883 281 18 2 1 281 401093131 401092853 9.690000e-110 407.0
38 TraesCS3D01G067200 chr6D 92.527 281 21 0 1 281 266804584 266804864 1.250000e-108 403.0
39 TraesCS3D01G067200 chr6D 85.455 165 15 9 1556 1716 35636476 35636635 2.320000e-36 163.0
40 TraesCS3D01G067200 chr7D 92.553 282 16 5 1 280 438546107 438546385 1.620000e-107 399.0
41 TraesCS3D01G067200 chr7D 92.226 283 21 1 1 282 548050283 548050001 1.620000e-107 399.0
42 TraesCS3D01G067200 chr7D 92.226 283 20 1 1 281 557435522 557435240 1.620000e-107 399.0
43 TraesCS3D01G067200 chr7D 90.000 310 25 5 3 309 1105117 1104811 2.100000e-106 396.0
44 TraesCS3D01G067200 chr7D 84.242 165 18 7 1559 1720 58841708 58841867 1.390000e-33 154.0
45 TraesCS3D01G067200 chr7D 97.297 37 1 0 2427 2463 602285090 602285054 2.420000e-06 63.9
46 TraesCS3D01G067200 chr7D 97.059 34 1 0 2430 2463 48275346 48275379 1.120000e-04 58.4
47 TraesCS3D01G067200 chr2A 88.514 148 12 5 1550 1694 77350881 77351026 1.070000e-39 174.0
48 TraesCS3D01G067200 chr2A 76.488 336 50 13 2429 2754 725910858 725910542 3.880000e-34 156.0
49 TraesCS3D01G067200 chrUn 88.571 140 11 5 1558 1694 108763081 108762944 6.440000e-37 165.0
50 TraesCS3D01G067200 chr6A 85.802 162 13 8 1558 1716 145188617 145188771 2.320000e-36 163.0
51 TraesCS3D01G067200 chr7A 88.321 137 10 6 1551 1685 128178676 128178808 3.000000e-35 159.0
52 TraesCS3D01G067200 chr5D 88.806 134 8 4 1559 1692 20982291 20982417 1.080000e-34 158.0
53 TraesCS3D01G067200 chr1A 87.324 142 12 6 1558 1694 557897513 557897653 1.080000e-34 158.0
54 TraesCS3D01G067200 chr1A 91.111 45 4 0 2430 2474 532760303 532760259 8.690000e-06 62.1
55 TraesCS3D01G067200 chr2B 87.500 112 12 2 2640 2751 716550441 716550332 8.450000e-26 128.0
56 TraesCS3D01G067200 chr4B 93.333 45 3 0 2429 2473 38753436 38753392 1.870000e-07 67.6
57 TraesCS3D01G067200 chr1D 97.143 35 1 0 2429 2463 438585310 438585344 3.130000e-05 60.2
58 TraesCS3D01G067200 chr6B 97.059 34 1 0 2430 2463 607044067 607044034 1.120000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G067200 chr3D 29799058 29801962 2904 True 1845.733333 5365 100.000000 1 2905 3 chr3D.!!$R4 2904
1 TraesCS3D01G067200 chr3D 29811908 29813128 1220 True 1262.000000 1262 86.287000 387 1557 1 chr3D.!!$R1 1170
2 TraesCS3D01G067200 chr3D 299744614 299745503 889 False 689.000000 689 81.648000 502 1360 1 chr3D.!!$F2 858
3 TraesCS3D01G067200 chr3D 29852280 29852994 714 True 558.650000 1046 94.324500 2150 2905 2 chr3D.!!$R5 755
4 TraesCS3D01G067200 chr3D 29860589 29862118 1529 True 450.275000 1105 91.199000 444 2151 4 chr3D.!!$R6 1707
5 TraesCS3D01G067200 chr3D 29788507 29790387 1880 True 428.666667 891 90.147000 387 2388 3 chr3D.!!$R3 2001
6 TraesCS3D01G067200 chr3A 40388925 40390850 1925 True 628.000000 1410 88.001667 277 2429 3 chr3A.!!$R1 2152
7 TraesCS3D01G067200 chr3A 40555705 40556837 1132 True 585.000000 1016 88.506000 390 1481 2 chr3A.!!$R2 1091
8 TraesCS3D01G067200 chr3B 50654056 50654917 861 True 998.000000 998 87.810000 517 1382 1 chr3B.!!$R1 865
9 TraesCS3D01G067200 chr3B 50942457 50943799 1342 False 589.000000 1035 84.291000 387 1967 2 chr3B.!!$F1 1580
10 TraesCS3D01G067200 chr3B 50957618 50959693 2075 True 546.680000 1225 92.069200 683 2905 5 chr3B.!!$R2 2222
11 TraesCS3D01G067200 chr7B 707946103 707947449 1346 True 321.075000 894 89.889750 513 1755 4 chr7B.!!$R1 1242

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
251 252 0.107897 TGTGCTATAAGGCGTGTGGG 60.108 55.000 0.0 0.0 34.52 4.61 F
252 253 1.153249 TGCTATAAGGCGTGTGGGC 60.153 57.895 0.0 0.0 42.69 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1318 1805 0.320073 TTCCAGATTCGTTTCGCCGT 60.320 50.000 0.00 0.00 0.0 5.68 R
1936 2612 1.077716 GGATAGCCGGCCTGTTGTT 60.078 57.895 26.15 4.77 0.0 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.981088 TCAGTGTAAACATCATGGCAATT 57.019 34.783 0.00 0.00 0.00 2.32
23 24 5.953183 TCAGTGTAAACATCATGGCAATTC 58.047 37.500 0.00 0.00 0.00 2.17
24 25 5.476254 TCAGTGTAAACATCATGGCAATTCA 59.524 36.000 0.00 0.00 0.00 2.57
25 26 6.153170 TCAGTGTAAACATCATGGCAATTCAT 59.847 34.615 0.00 0.00 0.00 2.57
26 27 6.254804 CAGTGTAAACATCATGGCAATTCATG 59.745 38.462 0.00 1.56 44.20 3.07
27 28 6.071221 AGTGTAAACATCATGGCAATTCATGT 60.071 34.615 6.93 0.00 43.52 3.21
28 29 6.035220 GTGTAAACATCATGGCAATTCATGTG 59.965 38.462 6.93 7.27 43.52 3.21
29 30 3.173668 ACATCATGGCAATTCATGTGC 57.826 42.857 6.93 0.00 43.52 4.57
30 31 2.498078 ACATCATGGCAATTCATGTGCA 59.502 40.909 8.81 0.00 44.07 4.57
31 32 3.055747 ACATCATGGCAATTCATGTGCAA 60.056 39.130 8.81 0.00 44.07 4.08
32 33 3.897141 TCATGGCAATTCATGTGCAAT 57.103 38.095 8.81 0.38 44.07 3.56
33 34 5.163395 ACATCATGGCAATTCATGTGCAATA 60.163 36.000 8.81 0.00 44.07 1.90
34 35 4.939271 TCATGGCAATTCATGTGCAATAG 58.061 39.130 8.81 0.10 44.07 1.73
35 36 4.645588 TCATGGCAATTCATGTGCAATAGA 59.354 37.500 8.81 2.08 44.07 1.98
36 37 4.374843 TGGCAATTCATGTGCAATAGAC 57.625 40.909 8.81 0.00 44.07 2.59
37 38 3.762823 TGGCAATTCATGTGCAATAGACA 59.237 39.130 8.81 0.00 44.07 3.41
38 39 4.403113 TGGCAATTCATGTGCAATAGACAT 59.597 37.500 8.81 0.00 44.07 3.06
43 44 3.786516 CATGTGCAATAGACATGGCAA 57.213 42.857 0.00 0.00 42.87 4.52
44 45 3.441163 CATGTGCAATAGACATGGCAAC 58.559 45.455 0.00 0.00 42.87 4.17
45 46 2.794103 TGTGCAATAGACATGGCAACT 58.206 42.857 0.00 0.00 42.87 3.16
46 47 3.156293 TGTGCAATAGACATGGCAACTT 58.844 40.909 0.00 0.00 42.87 2.66
47 48 3.573538 TGTGCAATAGACATGGCAACTTT 59.426 39.130 0.00 0.00 42.87 2.66
48 49 4.039004 TGTGCAATAGACATGGCAACTTTT 59.961 37.500 0.00 0.00 42.87 2.27
49 50 5.242615 TGTGCAATAGACATGGCAACTTTTA 59.757 36.000 0.00 0.00 42.87 1.52
50 51 6.155827 GTGCAATAGACATGGCAACTTTTAA 58.844 36.000 0.00 0.00 42.87 1.52
51 52 6.089417 GTGCAATAGACATGGCAACTTTTAAC 59.911 38.462 0.00 0.00 42.87 2.01
52 53 5.286082 GCAATAGACATGGCAACTTTTAACG 59.714 40.000 0.00 0.00 30.66 3.18
53 54 3.282831 AGACATGGCAACTTTTAACGC 57.717 42.857 0.00 0.00 37.61 4.84
54 55 2.621055 AGACATGGCAACTTTTAACGCA 59.379 40.909 0.00 0.00 37.61 5.24
55 56 3.067461 AGACATGGCAACTTTTAACGCAA 59.933 39.130 0.00 0.00 37.61 4.85
56 57 3.786635 ACATGGCAACTTTTAACGCAAA 58.213 36.364 0.00 0.00 37.61 3.68
57 58 4.184629 ACATGGCAACTTTTAACGCAAAA 58.815 34.783 0.00 0.00 34.89 2.44
58 59 4.631813 ACATGGCAACTTTTAACGCAAAAA 59.368 33.333 0.00 0.00 35.71 1.94
108 109 6.627395 ATCTAGTTTCGAAGATCTCATCGT 57.373 37.500 14.72 1.01 38.14 3.73
109 110 5.811588 TCTAGTTTCGAAGATCTCATCGTG 58.188 41.667 14.72 3.07 38.14 4.35
110 111 4.703645 AGTTTCGAAGATCTCATCGTGA 57.296 40.909 14.72 4.69 38.14 4.35
111 112 4.667262 AGTTTCGAAGATCTCATCGTGAG 58.333 43.478 14.72 8.24 45.59 3.51
112 113 3.699779 TTCGAAGATCTCATCGTGAGG 57.300 47.619 14.72 0.00 44.39 3.86
113 114 1.950216 TCGAAGATCTCATCGTGAGGG 59.050 52.381 14.72 0.00 44.39 4.30
114 115 1.950216 CGAAGATCTCATCGTGAGGGA 59.050 52.381 8.38 0.00 44.39 4.20
115 116 2.556189 CGAAGATCTCATCGTGAGGGAT 59.444 50.000 8.38 1.76 44.39 3.85
116 117 3.005261 CGAAGATCTCATCGTGAGGGATT 59.995 47.826 8.38 7.00 44.39 3.01
117 118 4.500545 CGAAGATCTCATCGTGAGGGATTT 60.501 45.833 8.38 5.50 44.39 2.17
118 119 5.278512 CGAAGATCTCATCGTGAGGGATTTA 60.279 44.000 8.38 0.00 44.39 1.40
119 120 6.485830 AAGATCTCATCGTGAGGGATTTAA 57.514 37.500 12.89 0.00 44.39 1.52
120 121 6.678568 AGATCTCATCGTGAGGGATTTAAT 57.321 37.500 12.89 1.01 44.39 1.40
121 122 6.462500 AGATCTCATCGTGAGGGATTTAATG 58.538 40.000 12.89 0.00 44.39 1.90
122 123 4.960938 TCTCATCGTGAGGGATTTAATGG 58.039 43.478 12.89 0.00 44.39 3.16
123 124 4.408921 TCTCATCGTGAGGGATTTAATGGT 59.591 41.667 12.89 0.00 44.39 3.55
124 125 4.450976 TCATCGTGAGGGATTTAATGGTG 58.549 43.478 0.00 0.00 0.00 4.17
125 126 4.163268 TCATCGTGAGGGATTTAATGGTGA 59.837 41.667 0.00 0.00 0.00 4.02
126 127 4.561500 TCGTGAGGGATTTAATGGTGAA 57.438 40.909 0.00 0.00 0.00 3.18
127 128 4.912586 TCGTGAGGGATTTAATGGTGAAA 58.087 39.130 0.00 0.00 0.00 2.69
128 129 5.317808 TCGTGAGGGATTTAATGGTGAAAA 58.682 37.500 0.00 0.00 0.00 2.29
129 130 5.182380 TCGTGAGGGATTTAATGGTGAAAAC 59.818 40.000 0.00 0.00 0.00 2.43
130 131 5.399013 GTGAGGGATTTAATGGTGAAAACG 58.601 41.667 0.00 0.00 0.00 3.60
131 132 4.461081 TGAGGGATTTAATGGTGAAAACGG 59.539 41.667 0.00 0.00 0.00 4.44
132 133 4.668636 AGGGATTTAATGGTGAAAACGGA 58.331 39.130 0.00 0.00 0.00 4.69
133 134 5.269189 AGGGATTTAATGGTGAAAACGGAT 58.731 37.500 0.00 0.00 0.00 4.18
134 135 5.359860 AGGGATTTAATGGTGAAAACGGATC 59.640 40.000 0.00 0.00 0.00 3.36
135 136 5.359860 GGGATTTAATGGTGAAAACGGATCT 59.640 40.000 0.00 0.00 0.00 2.75
136 137 6.127451 GGGATTTAATGGTGAAAACGGATCTT 60.127 38.462 0.00 0.00 0.00 2.40
137 138 6.972901 GGATTTAATGGTGAAAACGGATCTTC 59.027 38.462 0.00 0.00 0.00 2.87
138 139 6.885952 TTTAATGGTGAAAACGGATCTTCA 57.114 33.333 0.00 0.00 0.00 3.02
139 140 6.885952 TTAATGGTGAAAACGGATCTTCAA 57.114 33.333 0.00 0.00 33.52 2.69
140 141 5.982890 AATGGTGAAAACGGATCTTCAAT 57.017 34.783 0.00 0.00 33.52 2.57
141 142 5.567138 ATGGTGAAAACGGATCTTCAATC 57.433 39.130 0.00 0.00 33.52 2.67
142 143 3.435327 TGGTGAAAACGGATCTTCAATCG 59.565 43.478 0.00 0.00 33.52 3.34
143 144 3.181510 GGTGAAAACGGATCTTCAATCGG 60.182 47.826 0.00 0.00 33.52 4.18
144 145 3.682858 GTGAAAACGGATCTTCAATCGGA 59.317 43.478 0.00 0.00 33.52 4.55
145 146 4.332819 GTGAAAACGGATCTTCAATCGGAT 59.667 41.667 0.00 0.00 33.52 4.18
146 147 4.941263 TGAAAACGGATCTTCAATCGGATT 59.059 37.500 0.00 0.00 0.00 3.01
147 148 5.414454 TGAAAACGGATCTTCAATCGGATTT 59.586 36.000 0.00 1.34 0.00 2.17
148 149 5.897377 AAACGGATCTTCAATCGGATTTT 57.103 34.783 0.00 0.00 0.00 1.82
149 150 5.897377 AACGGATCTTCAATCGGATTTTT 57.103 34.783 0.00 0.00 0.00 1.94
150 151 5.485662 ACGGATCTTCAATCGGATTTTTC 57.514 39.130 0.00 0.00 0.00 2.29
151 152 4.941263 ACGGATCTTCAATCGGATTTTTCA 59.059 37.500 0.00 0.00 0.00 2.69
152 153 5.590259 ACGGATCTTCAATCGGATTTTTCAT 59.410 36.000 0.00 0.00 0.00 2.57
153 154 6.095440 ACGGATCTTCAATCGGATTTTTCATT 59.905 34.615 0.00 0.00 0.00 2.57
154 155 6.634436 CGGATCTTCAATCGGATTTTTCATTC 59.366 38.462 0.00 0.00 0.00 2.67
155 156 7.483307 GGATCTTCAATCGGATTTTTCATTCA 58.517 34.615 0.00 0.00 0.00 2.57
156 157 7.975616 GGATCTTCAATCGGATTTTTCATTCAA 59.024 33.333 0.00 0.00 0.00 2.69
157 158 9.357652 GATCTTCAATCGGATTTTTCATTCAAA 57.642 29.630 0.00 0.00 0.00 2.69
158 159 9.709495 ATCTTCAATCGGATTTTTCATTCAAAA 57.291 25.926 0.00 0.00 31.73 2.44
159 160 9.195411 TCTTCAATCGGATTTTTCATTCAAAAG 57.805 29.630 0.00 0.00 35.34 2.27
160 161 9.195411 CTTCAATCGGATTTTTCATTCAAAAGA 57.805 29.630 0.00 0.00 35.34 2.52
161 162 9.709495 TTCAATCGGATTTTTCATTCAAAAGAT 57.291 25.926 0.00 0.00 35.34 2.40
244 245 4.868067 ACGTAGTATGTGTGCTATAAGGC 58.132 43.478 0.00 0.00 41.94 4.35
245 246 3.912563 CGTAGTATGTGTGCTATAAGGCG 59.087 47.826 0.00 0.00 34.52 5.52
246 247 4.556104 CGTAGTATGTGTGCTATAAGGCGT 60.556 45.833 0.00 0.00 34.52 5.68
247 248 3.717707 AGTATGTGTGCTATAAGGCGTG 58.282 45.455 0.00 0.00 34.52 5.34
248 249 2.691409 ATGTGTGCTATAAGGCGTGT 57.309 45.000 0.00 0.00 34.52 4.49
249 250 1.720805 TGTGTGCTATAAGGCGTGTG 58.279 50.000 0.00 0.00 34.52 3.82
250 251 1.006832 GTGTGCTATAAGGCGTGTGG 58.993 55.000 0.00 0.00 34.52 4.17
251 252 0.107897 TGTGCTATAAGGCGTGTGGG 60.108 55.000 0.00 0.00 34.52 4.61
252 253 1.153249 TGCTATAAGGCGTGTGGGC 60.153 57.895 0.00 0.00 42.69 5.36
261 262 3.656045 CGTGTGGGCGGGTTTGAC 61.656 66.667 0.00 0.00 0.00 3.18
262 263 2.203294 GTGTGGGCGGGTTTGACT 60.203 61.111 0.00 0.00 0.00 3.41
263 264 2.112297 TGTGGGCGGGTTTGACTC 59.888 61.111 0.00 0.00 0.00 3.36
264 265 3.047877 GTGGGCGGGTTTGACTCG 61.048 66.667 0.00 0.00 46.68 4.18
269 270 2.280524 CGGGTTTGACTCGCACCA 60.281 61.111 0.00 0.00 34.24 4.17
270 271 2.604174 CGGGTTTGACTCGCACCAC 61.604 63.158 0.00 0.00 34.24 4.16
271 272 1.525077 GGGTTTGACTCGCACCACA 60.525 57.895 0.00 0.00 31.50 4.17
272 273 1.647084 GGTTTGACTCGCACCACAC 59.353 57.895 0.00 0.00 0.00 3.82
273 274 1.275657 GTTTGACTCGCACCACACG 59.724 57.895 0.00 0.00 0.00 4.49
274 275 1.153529 TTTGACTCGCACCACACGT 60.154 52.632 0.00 0.00 0.00 4.49
275 276 1.425267 TTTGACTCGCACCACACGTG 61.425 55.000 15.48 15.48 46.03 4.49
293 294 2.094803 CGTGTGGGCAAAATAGCATTCA 60.095 45.455 0.00 0.00 35.83 2.57
316 317 2.372172 CTCCTAATTAACCGCCCCTGAT 59.628 50.000 0.00 0.00 0.00 2.90
508 567 8.251026 AGTCGTCTTTGTTCATAGTATTGATCA 58.749 33.333 0.00 0.00 0.00 2.92
536 610 1.260561 GAAGAAGCAGACGCAACGAAA 59.739 47.619 0.00 0.00 42.27 3.46
551 625 1.580942 GAAAGCATGCAGGCGACAA 59.419 52.632 21.98 0.00 39.27 3.18
593 671 3.157932 GCAGTAAAGTGCGAGATCTCT 57.842 47.619 20.26 3.25 32.74 3.10
594 672 3.112580 GCAGTAAAGTGCGAGATCTCTC 58.887 50.000 20.26 13.35 39.55 3.20
656 744 3.676093 AGTCTACTGATCTGTGTCGACA 58.324 45.455 15.76 15.76 0.00 4.35
859 1256 4.383861 CCGGCTGCTGAGTCTGCA 62.384 66.667 21.67 21.67 36.88 4.41
1314 1801 2.954753 GCCTGAAGTGCACGTTCGG 61.955 63.158 21.44 21.44 0.00 4.30
1318 1805 1.659335 GAAGTGCACGTTCGGTCGA 60.659 57.895 12.01 0.00 34.70 4.20
1342 1840 2.683968 CGAAACGAATCTGGAACCTGA 58.316 47.619 3.13 3.13 0.00 3.86
1392 1968 4.163078 CCCCCTAATATATGAGGCAGTGAG 59.837 50.000 10.47 0.00 0.00 3.51
1393 1969 4.780021 CCCCTAATATATGAGGCAGTGAGT 59.220 45.833 10.47 0.00 0.00 3.41
1394 1970 5.105146 CCCCTAATATATGAGGCAGTGAGTC 60.105 48.000 10.47 0.00 0.00 3.36
1423 2017 5.221106 GCTTTTTGTAACCGGGAAGTAGTTT 60.221 40.000 6.32 0.00 0.00 2.66
1444 2038 2.089201 GTGCCGCTTAATTAACCCACT 58.911 47.619 0.00 0.00 0.00 4.00
1446 2040 2.089201 GCCGCTTAATTAACCCACTGT 58.911 47.619 0.00 0.00 0.00 3.55
1447 2041 2.159435 GCCGCTTAATTAACCCACTGTG 60.159 50.000 0.00 0.00 0.00 3.66
1448 2042 3.078837 CCGCTTAATTAACCCACTGTGT 58.921 45.455 7.08 0.00 0.00 3.72
1449 2043 3.119990 CCGCTTAATTAACCCACTGTGTG 60.120 47.826 7.08 0.00 0.00 3.82
1450 2044 3.669557 CGCTTAATTAACCCACTGTGTGC 60.670 47.826 7.08 0.00 31.34 4.57
1476 2076 6.016024 TGCTGGCTAAATATGCTCAATTTAGG 60.016 38.462 18.90 9.84 42.93 2.69
1535 2159 1.393539 GCTTGCGCTTTTCATCGACTA 59.606 47.619 9.73 0.00 0.00 2.59
1536 2160 2.535732 GCTTGCGCTTTTCATCGACTAG 60.536 50.000 9.73 0.00 0.00 2.57
1537 2161 0.999406 TGCGCTTTTCATCGACTAGC 59.001 50.000 9.73 0.00 0.00 3.42
1538 2162 1.281899 GCGCTTTTCATCGACTAGCT 58.718 50.000 0.00 0.00 0.00 3.32
1549 2175 3.653539 TCGACTAGCTTGTTACTGCAA 57.346 42.857 1.43 0.00 0.00 4.08
1550 2176 4.188247 TCGACTAGCTTGTTACTGCAAT 57.812 40.909 1.43 0.00 0.00 3.56
1551 2177 5.319140 TCGACTAGCTTGTTACTGCAATA 57.681 39.130 1.43 0.00 0.00 1.90
1552 2178 5.716094 TCGACTAGCTTGTTACTGCAATAA 58.284 37.500 1.43 0.00 0.00 1.40
1553 2179 6.160684 TCGACTAGCTTGTTACTGCAATAAA 58.839 36.000 1.43 0.00 0.00 1.40
1554 2180 6.647481 TCGACTAGCTTGTTACTGCAATAAAA 59.353 34.615 1.43 0.00 0.00 1.52
1555 2181 6.736853 CGACTAGCTTGTTACTGCAATAAAAC 59.263 38.462 1.43 0.00 0.00 2.43
1556 2182 7.360101 CGACTAGCTTGTTACTGCAATAAAACT 60.360 37.037 1.43 0.00 0.00 2.66
1557 2183 8.842358 ACTAGCTTGTTACTGCAATAAAACTA 57.158 30.769 0.00 0.00 0.00 2.24
1558 2184 8.718734 ACTAGCTTGTTACTGCAATAAAACTAC 58.281 33.333 0.00 0.00 0.00 2.73
1559 2185 7.504924 AGCTTGTTACTGCAATAAAACTACA 57.495 32.000 0.00 0.00 0.00 2.74
1560 2186 7.584987 AGCTTGTTACTGCAATAAAACTACAG 58.415 34.615 0.00 0.00 0.00 2.74
1561 2187 7.228706 AGCTTGTTACTGCAATAAAACTACAGT 59.771 33.333 0.00 0.00 43.60 3.55
1562 2188 7.860872 GCTTGTTACTGCAATAAAACTACAGTT 59.139 33.333 0.00 0.00 41.56 3.16
1564 2190 9.509855 TTGTTACTGCAATAAAACTACAGTTTG 57.490 29.630 8.06 0.00 46.47 2.93
1565 2191 8.894731 TGTTACTGCAATAAAACTACAGTTTGA 58.105 29.630 8.06 1.31 46.47 2.69
1566 2192 9.166126 GTTACTGCAATAAAACTACAGTTTGAC 57.834 33.333 8.06 0.00 46.47 3.18
1567 2193 7.568199 ACTGCAATAAAACTACAGTTTGACT 57.432 32.000 8.06 0.00 46.47 3.41
1568 2194 8.671384 ACTGCAATAAAACTACAGTTTGACTA 57.329 30.769 8.06 0.00 46.47 2.59
1569 2195 9.116067 ACTGCAATAAAACTACAGTTTGACTAA 57.884 29.630 8.06 0.00 46.47 2.24
1578 2204 9.561069 AAACTACAGTTTGACTAATTCACATCT 57.439 29.630 6.56 0.00 45.55 2.90
1580 2206 9.862371 ACTACAGTTTGACTAATTCACATCTAG 57.138 33.333 0.00 0.00 32.26 2.43
1583 2209 9.376075 ACAGTTTGACTAATTCACATCTAGATG 57.624 33.333 27.63 27.63 44.15 2.90
1611 2237 9.691362 TTTTTAAGAATGTCACATTTAAGCTCC 57.309 29.630 4.04 0.00 0.00 4.70
1612 2238 5.904362 AAGAATGTCACATTTAAGCTCCC 57.096 39.130 4.04 0.00 0.00 4.30
1613 2239 4.922206 AGAATGTCACATTTAAGCTCCCA 58.078 39.130 4.04 0.00 0.00 4.37
1614 2240 4.702131 AGAATGTCACATTTAAGCTCCCAC 59.298 41.667 4.04 0.00 0.00 4.61
1615 2241 3.500448 TGTCACATTTAAGCTCCCACA 57.500 42.857 0.00 0.00 0.00 4.17
1616 2242 3.826524 TGTCACATTTAAGCTCCCACAA 58.173 40.909 0.00 0.00 0.00 3.33
1617 2243 4.211125 TGTCACATTTAAGCTCCCACAAA 58.789 39.130 0.00 0.00 0.00 2.83
1618 2244 4.832266 TGTCACATTTAAGCTCCCACAAAT 59.168 37.500 0.00 0.00 0.00 2.32
1619 2245 6.007076 TGTCACATTTAAGCTCCCACAAATA 58.993 36.000 0.00 0.00 0.00 1.40
1620 2246 6.072175 TGTCACATTTAAGCTCCCACAAATAC 60.072 38.462 0.00 0.00 0.00 1.89
1621 2247 6.007076 TCACATTTAAGCTCCCACAAATACA 58.993 36.000 0.00 0.00 0.00 2.29
1622 2248 6.663093 TCACATTTAAGCTCCCACAAATACAT 59.337 34.615 0.00 0.00 0.00 2.29
1623 2249 7.831690 TCACATTTAAGCTCCCACAAATACATA 59.168 33.333 0.00 0.00 0.00 2.29
1624 2250 8.465999 CACATTTAAGCTCCCACAAATACATAA 58.534 33.333 0.00 0.00 0.00 1.90
1625 2251 9.200817 ACATTTAAGCTCCCACAAATACATAAT 57.799 29.630 0.00 0.00 0.00 1.28
1626 2252 9.467258 CATTTAAGCTCCCACAAATACATAATG 57.533 33.333 0.00 0.00 0.00 1.90
1627 2253 5.520376 AAGCTCCCACAAATACATAATGC 57.480 39.130 0.00 0.00 0.00 3.56
1628 2254 4.535781 AGCTCCCACAAATACATAATGCA 58.464 39.130 0.00 0.00 0.00 3.96
1629 2255 4.955450 AGCTCCCACAAATACATAATGCAA 59.045 37.500 0.00 0.00 0.00 4.08
1630 2256 5.043248 GCTCCCACAAATACATAATGCAAC 58.957 41.667 0.00 0.00 0.00 4.17
1631 2257 5.394005 GCTCCCACAAATACATAATGCAACA 60.394 40.000 0.00 0.00 0.00 3.33
1632 2258 6.206395 TCCCACAAATACATAATGCAACAG 57.794 37.500 0.00 0.00 0.00 3.16
1633 2259 5.948758 TCCCACAAATACATAATGCAACAGA 59.051 36.000 0.00 0.00 0.00 3.41
1634 2260 6.435591 TCCCACAAATACATAATGCAACAGAA 59.564 34.615 0.00 0.00 0.00 3.02
1635 2261 7.039434 TCCCACAAATACATAATGCAACAGAAA 60.039 33.333 0.00 0.00 0.00 2.52
1636 2262 7.601886 CCCACAAATACATAATGCAACAGAAAA 59.398 33.333 0.00 0.00 0.00 2.29
1637 2263 8.986847 CCACAAATACATAATGCAACAGAAAAA 58.013 29.630 0.00 0.00 0.00 1.94
1638 2264 9.796062 CACAAATACATAATGCAACAGAAAAAC 57.204 29.630 0.00 0.00 0.00 2.43
1639 2265 9.539825 ACAAATACATAATGCAACAGAAAAACA 57.460 25.926 0.00 0.00 0.00 2.83
1642 2268 9.979578 AATACATAATGCAACAGAAAAACAAGA 57.020 25.926 0.00 0.00 0.00 3.02
1643 2269 9.979578 ATACATAATGCAACAGAAAAACAAGAA 57.020 25.926 0.00 0.00 0.00 2.52
1644 2270 8.715191 ACATAATGCAACAGAAAAACAAGAAA 57.285 26.923 0.00 0.00 0.00 2.52
1645 2271 9.160496 ACATAATGCAACAGAAAAACAAGAAAA 57.840 25.926 0.00 0.00 0.00 2.29
1646 2272 9.985318 CATAATGCAACAGAAAAACAAGAAAAA 57.015 25.926 0.00 0.00 0.00 1.94
1667 2293 7.961325 AAAAACAAAGACAAAAAGAAGAGCA 57.039 28.000 0.00 0.00 0.00 4.26
1668 2294 8.552083 AAAAACAAAGACAAAAAGAAGAGCAT 57.448 26.923 0.00 0.00 0.00 3.79
1669 2295 9.651913 AAAAACAAAGACAAAAAGAAGAGCATA 57.348 25.926 0.00 0.00 0.00 3.14
1670 2296 9.651913 AAAACAAAGACAAAAAGAAGAGCATAA 57.348 25.926 0.00 0.00 0.00 1.90
1671 2297 9.651913 AAACAAAGACAAAAAGAAGAGCATAAA 57.348 25.926 0.00 0.00 0.00 1.40
1672 2298 9.651913 AACAAAGACAAAAAGAAGAGCATAAAA 57.348 25.926 0.00 0.00 0.00 1.52
1673 2299 9.087424 ACAAAGACAAAAAGAAGAGCATAAAAC 57.913 29.630 0.00 0.00 0.00 2.43
1674 2300 9.086336 CAAAGACAAAAAGAAGAGCATAAAACA 57.914 29.630 0.00 0.00 0.00 2.83
1675 2301 8.862550 AAGACAAAAAGAAGAGCATAAAACAG 57.137 30.769 0.00 0.00 0.00 3.16
1676 2302 8.225603 AGACAAAAAGAAGAGCATAAAACAGA 57.774 30.769 0.00 0.00 0.00 3.41
1677 2303 8.348507 AGACAAAAAGAAGAGCATAAAACAGAG 58.651 33.333 0.00 0.00 0.00 3.35
1678 2304 8.000780 ACAAAAAGAAGAGCATAAAACAGAGT 57.999 30.769 0.00 0.00 0.00 3.24
1679 2305 7.917505 ACAAAAAGAAGAGCATAAAACAGAGTG 59.082 33.333 0.00 0.00 0.00 3.51
1680 2306 7.807977 AAAAGAAGAGCATAAAACAGAGTGA 57.192 32.000 0.00 0.00 0.00 3.41
1681 2307 7.807977 AAAGAAGAGCATAAAACAGAGTGAA 57.192 32.000 0.00 0.00 0.00 3.18
1682 2308 6.793492 AGAAGAGCATAAAACAGAGTGAAC 57.207 37.500 0.00 0.00 0.00 3.18
1683 2309 6.291377 AGAAGAGCATAAAACAGAGTGAACA 58.709 36.000 0.00 0.00 0.00 3.18
1684 2310 6.939163 AGAAGAGCATAAAACAGAGTGAACAT 59.061 34.615 0.00 0.00 0.00 2.71
1685 2311 6.734104 AGAGCATAAAACAGAGTGAACATC 57.266 37.500 0.00 0.00 0.00 3.06
1686 2312 6.233434 AGAGCATAAAACAGAGTGAACATCA 58.767 36.000 0.00 0.00 0.00 3.07
1687 2313 6.370994 AGAGCATAAAACAGAGTGAACATCAG 59.629 38.462 0.00 0.00 0.00 2.90
1688 2314 5.091431 GCATAAAACAGAGTGAACATCAGC 58.909 41.667 0.00 0.00 0.00 4.26
1689 2315 5.106396 GCATAAAACAGAGTGAACATCAGCT 60.106 40.000 0.00 0.00 0.00 4.24
1690 2316 6.569226 GCATAAAACAGAGTGAACATCAGCTT 60.569 38.462 0.00 0.00 0.00 3.74
1691 2317 7.361201 GCATAAAACAGAGTGAACATCAGCTTA 60.361 37.037 0.00 0.00 0.00 3.09
1692 2318 6.551385 AAAACAGAGTGAACATCAGCTTAG 57.449 37.500 0.00 0.00 0.00 2.18
1693 2319 5.474578 AACAGAGTGAACATCAGCTTAGA 57.525 39.130 0.00 0.00 0.00 2.10
1694 2320 5.070770 ACAGAGTGAACATCAGCTTAGAG 57.929 43.478 0.00 0.00 0.00 2.43
1695 2321 4.769488 ACAGAGTGAACATCAGCTTAGAGA 59.231 41.667 0.00 0.00 0.00 3.10
1696 2322 5.421693 ACAGAGTGAACATCAGCTTAGAGAT 59.578 40.000 0.00 0.00 0.00 2.75
1697 2323 6.605194 ACAGAGTGAACATCAGCTTAGAGATA 59.395 38.462 0.00 0.00 0.00 1.98
1698 2324 7.287466 ACAGAGTGAACATCAGCTTAGAGATAT 59.713 37.037 0.00 0.00 0.00 1.63
1699 2325 7.595875 CAGAGTGAACATCAGCTTAGAGATATG 59.404 40.741 0.00 0.00 0.00 1.78
1700 2326 7.287466 AGAGTGAACATCAGCTTAGAGATATGT 59.713 37.037 0.00 0.00 0.00 2.29
1701 2327 7.432869 AGTGAACATCAGCTTAGAGATATGTC 58.567 38.462 0.00 0.00 0.00 3.06
1702 2328 6.644592 GTGAACATCAGCTTAGAGATATGTCC 59.355 42.308 0.00 0.00 0.00 4.02
1703 2329 6.552725 TGAACATCAGCTTAGAGATATGTCCT 59.447 38.462 0.00 0.00 0.00 3.85
1704 2330 7.725844 TGAACATCAGCTTAGAGATATGTCCTA 59.274 37.037 0.00 0.00 0.00 2.94
1705 2331 7.701539 ACATCAGCTTAGAGATATGTCCTAG 57.298 40.000 0.00 0.00 0.00 3.02
1706 2332 7.465960 ACATCAGCTTAGAGATATGTCCTAGA 58.534 38.462 0.00 0.00 0.00 2.43
1707 2333 7.393234 ACATCAGCTTAGAGATATGTCCTAGAC 59.607 40.741 0.00 0.00 0.00 2.59
1708 2334 5.935206 TCAGCTTAGAGATATGTCCTAGACG 59.065 44.000 0.00 0.00 34.95 4.18
1709 2335 5.123186 CAGCTTAGAGATATGTCCTAGACGG 59.877 48.000 0.00 0.00 34.95 4.79
1710 2336 5.013287 AGCTTAGAGATATGTCCTAGACGGA 59.987 44.000 0.00 0.00 40.30 4.69
1935 2611 6.426937 TGTTTAGTTTGCATCTGGTAAGAGTC 59.573 38.462 0.00 0.00 35.37 3.36
1936 2612 4.623932 AGTTTGCATCTGGTAAGAGTCA 57.376 40.909 0.00 0.00 35.37 3.41
1937 2613 4.973168 AGTTTGCATCTGGTAAGAGTCAA 58.027 39.130 0.00 0.00 35.37 3.18
2152 2903 5.005094 GCTAGTAGCCTAGTACAGTATGCT 58.995 45.833 11.33 0.00 42.35 3.79
2153 2904 5.122711 GCTAGTAGCCTAGTACAGTATGCTC 59.877 48.000 11.33 0.00 42.35 4.26
2154 2905 4.400120 AGTAGCCTAGTACAGTATGCTCC 58.600 47.826 0.00 0.00 42.53 4.70
2155 2906 3.314307 AGCCTAGTACAGTATGCTCCA 57.686 47.619 0.00 0.00 42.53 3.86
2156 2907 2.959707 AGCCTAGTACAGTATGCTCCAC 59.040 50.000 0.00 0.00 42.53 4.02
2157 2908 2.959707 GCCTAGTACAGTATGCTCCACT 59.040 50.000 0.00 0.47 42.53 4.00
2158 2909 3.004944 GCCTAGTACAGTATGCTCCACTC 59.995 52.174 0.00 0.00 42.53 3.51
2161 2912 3.647636 AGTACAGTATGCTCCACTCCAT 58.352 45.455 0.00 0.00 42.53 3.41
2162 2913 3.639094 AGTACAGTATGCTCCACTCCATC 59.361 47.826 0.00 0.00 42.53 3.51
2163 2914 2.470990 ACAGTATGCTCCACTCCATCA 58.529 47.619 0.00 0.00 42.53 3.07
2164 2915 3.044156 ACAGTATGCTCCACTCCATCAT 58.956 45.455 0.00 0.00 42.53 2.45
2165 2916 4.226384 ACAGTATGCTCCACTCCATCATA 58.774 43.478 0.00 0.00 42.53 2.15
2166 2917 4.842948 ACAGTATGCTCCACTCCATCATAT 59.157 41.667 0.00 0.00 42.53 1.78
2167 2918 6.019108 ACAGTATGCTCCACTCCATCATATA 58.981 40.000 0.00 0.00 42.53 0.86
2169 2920 7.841222 ACAGTATGCTCCACTCCATCATATATA 59.159 37.037 0.00 0.00 42.53 0.86
2173 2924 8.788238 ATGCTCCACTCCATCATATATATACA 57.212 34.615 0.00 0.00 0.00 2.29
2174 2925 8.788238 TGCTCCACTCCATCATATATATACAT 57.212 34.615 0.00 0.00 0.00 2.29
2175 2926 8.864087 TGCTCCACTCCATCATATATATACATC 58.136 37.037 0.00 0.00 0.00 3.06
2176 2927 9.087871 GCTCCACTCCATCATATATATACATCT 57.912 37.037 0.00 0.00 0.00 2.90
2178 2929 8.864087 TCCACTCCATCATATATATACATCTGC 58.136 37.037 0.00 0.00 0.00 4.26
2179 2930 8.093307 CCACTCCATCATATATATACATCTGCC 58.907 40.741 0.00 0.00 0.00 4.85
2180 2931 8.093307 CACTCCATCATATATATACATCTGCCC 58.907 40.741 0.00 0.00 0.00 5.36
2181 2932 7.791282 ACTCCATCATATATATACATCTGCCCA 59.209 37.037 0.00 0.00 0.00 5.36
2182 2933 7.966812 TCCATCATATATATACATCTGCCCAC 58.033 38.462 0.00 0.00 0.00 4.61
2183 2934 7.568366 TCCATCATATATATACATCTGCCCACA 59.432 37.037 0.00 0.00 0.00 4.17
2184 2935 8.380867 CCATCATATATATACATCTGCCCACAT 58.619 37.037 0.00 0.00 0.00 3.21
2187 2938 8.991275 TCATATATATACATCTGCCCACATTCA 58.009 33.333 0.00 0.00 0.00 2.57
2188 2939 9.788889 CATATATATACATCTGCCCACATTCAT 57.211 33.333 0.00 0.00 0.00 2.57
2195 2946 7.844493 ACATCTGCCCACATTCATATTTATT 57.156 32.000 0.00 0.00 0.00 1.40
2196 2947 8.938801 ACATCTGCCCACATTCATATTTATTA 57.061 30.769 0.00 0.00 0.00 0.98
2197 2948 9.537852 ACATCTGCCCACATTCATATTTATTAT 57.462 29.630 0.00 0.00 0.00 1.28
2198 2949 9.797556 CATCTGCCCACATTCATATTTATTATG 57.202 33.333 0.00 0.00 39.31 1.90
2305 3058 0.250252 TCTGCATGCCGAACACTTCA 60.250 50.000 16.68 0.00 0.00 3.02
2332 3086 5.794894 TGTAGCTCCTAAGGAAAACAAGAG 58.205 41.667 0.00 0.00 0.00 2.85
2337 3092 5.242795 TCCTAAGGAAAACAAGAGGGAAG 57.757 43.478 0.00 0.00 0.00 3.46
2355 3110 2.957402 AGAAATTGAGCACCACAGGA 57.043 45.000 0.00 0.00 0.00 3.86
2364 3119 3.264193 TGAGCACCACAGGAAACTCATAT 59.736 43.478 0.00 0.00 40.21 1.78
2450 3209 0.748367 GGCCCGGTCCTGAGATTTTC 60.748 60.000 0.00 0.00 0.00 2.29
2612 3378 1.673808 GGTGCGGTCTCCTATCGGTT 61.674 60.000 0.00 0.00 0.00 4.44
2627 3393 2.646930 TCGGTTACTCGCCTCTCATTA 58.353 47.619 0.00 0.00 0.00 1.90
2684 3450 2.366916 AGGGAGCATAGGAGATCAAACG 59.633 50.000 0.00 0.00 0.00 3.60
2701 3467 1.815421 CGTTGGCCGATAAGCAGCT 60.815 57.895 0.00 0.00 39.56 4.24
2713 3479 1.133809 AAGCAGCTGGACAAGGGGTA 61.134 55.000 17.12 0.00 0.00 3.69
2774 3543 7.442656 TGAAGGACGAACTATTTTCTTCTTCT 58.557 34.615 0.00 0.00 32.77 2.85
2775 3544 7.931948 TGAAGGACGAACTATTTTCTTCTTCTT 59.068 33.333 0.00 0.00 32.77 2.52
2776 3545 7.892778 AGGACGAACTATTTTCTTCTTCTTC 57.107 36.000 0.00 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.476254 TGAATTGCCATGATGTTTACACTGA 59.524 36.000 0.00 0.00 0.00 3.41
1 2 5.712004 TGAATTGCCATGATGTTTACACTG 58.288 37.500 0.00 0.00 0.00 3.66
2 3 5.981088 TGAATTGCCATGATGTTTACACT 57.019 34.783 0.00 0.00 0.00 3.55
4 5 6.100668 CACATGAATTGCCATGATGTTTACA 58.899 36.000 12.68 0.00 44.98 2.41
5 6 5.005971 GCACATGAATTGCCATGATGTTTAC 59.994 40.000 12.68 0.00 44.98 2.01
6 7 5.110598 GCACATGAATTGCCATGATGTTTA 58.889 37.500 12.68 0.00 44.98 2.01
7 8 3.936453 GCACATGAATTGCCATGATGTTT 59.064 39.130 12.68 0.00 44.98 2.83
8 9 3.055747 TGCACATGAATTGCCATGATGTT 60.056 39.130 12.68 0.00 44.98 2.71
9 10 2.498078 TGCACATGAATTGCCATGATGT 59.502 40.909 12.68 0.00 44.98 3.06
10 11 3.172229 TGCACATGAATTGCCATGATG 57.828 42.857 12.68 8.75 44.98 3.07
11 12 3.897141 TTGCACATGAATTGCCATGAT 57.103 38.095 12.68 0.00 44.98 2.45
12 13 3.897141 ATTGCACATGAATTGCCATGA 57.103 38.095 12.68 0.00 44.98 3.07
13 14 4.743151 GTCTATTGCACATGAATTGCCATG 59.257 41.667 0.00 5.76 46.90 3.66
14 15 4.403113 TGTCTATTGCACATGAATTGCCAT 59.597 37.500 0.00 0.00 39.39 4.40
15 16 3.762823 TGTCTATTGCACATGAATTGCCA 59.237 39.130 0.00 0.00 39.39 4.92
16 17 4.374843 TGTCTATTGCACATGAATTGCC 57.625 40.909 0.00 0.00 39.39 4.52
24 25 3.359033 AGTTGCCATGTCTATTGCACAT 58.641 40.909 0.00 0.00 34.99 3.21
25 26 2.794103 AGTTGCCATGTCTATTGCACA 58.206 42.857 0.00 0.00 34.99 4.57
26 27 3.855689 AAGTTGCCATGTCTATTGCAC 57.144 42.857 0.00 0.00 34.99 4.57
27 28 4.870123 AAAAGTTGCCATGTCTATTGCA 57.130 36.364 0.00 0.00 33.58 4.08
28 29 5.286082 CGTTAAAAGTTGCCATGTCTATTGC 59.714 40.000 0.00 0.00 0.00 3.56
29 30 5.286082 GCGTTAAAAGTTGCCATGTCTATTG 59.714 40.000 0.00 0.00 0.00 1.90
30 31 5.048364 TGCGTTAAAAGTTGCCATGTCTATT 60.048 36.000 0.00 0.00 0.00 1.73
31 32 4.457603 TGCGTTAAAAGTTGCCATGTCTAT 59.542 37.500 0.00 0.00 0.00 1.98
32 33 3.815962 TGCGTTAAAAGTTGCCATGTCTA 59.184 39.130 0.00 0.00 0.00 2.59
33 34 2.621055 TGCGTTAAAAGTTGCCATGTCT 59.379 40.909 0.00 0.00 0.00 3.41
34 35 3.006659 TGCGTTAAAAGTTGCCATGTC 57.993 42.857 0.00 0.00 0.00 3.06
35 36 3.444703 TTGCGTTAAAAGTTGCCATGT 57.555 38.095 0.00 0.00 0.00 3.21
36 37 4.785669 TTTTGCGTTAAAAGTTGCCATG 57.214 36.364 0.00 0.00 33.48 3.66
84 85 6.577055 CACGATGAGATCTTCGAAACTAGATC 59.423 42.308 20.72 14.39 44.54 2.75
85 86 6.261158 TCACGATGAGATCTTCGAAACTAGAT 59.739 38.462 20.72 0.00 43.48 1.98
86 87 5.585047 TCACGATGAGATCTTCGAAACTAGA 59.415 40.000 20.72 7.78 43.48 2.43
87 88 5.811588 TCACGATGAGATCTTCGAAACTAG 58.188 41.667 20.72 6.04 43.48 2.57
88 89 5.813080 TCACGATGAGATCTTCGAAACTA 57.187 39.130 20.72 1.93 43.48 2.24
89 90 4.703645 TCACGATGAGATCTTCGAAACT 57.296 40.909 20.72 0.00 43.48 2.66
101 102 4.512944 CACCATTAAATCCCTCACGATGAG 59.487 45.833 7.72 7.72 43.91 2.90
102 103 4.163268 TCACCATTAAATCCCTCACGATGA 59.837 41.667 0.00 0.00 0.00 2.92
103 104 4.450976 TCACCATTAAATCCCTCACGATG 58.549 43.478 0.00 0.00 0.00 3.84
104 105 4.771114 TCACCATTAAATCCCTCACGAT 57.229 40.909 0.00 0.00 0.00 3.73
105 106 4.561500 TTCACCATTAAATCCCTCACGA 57.438 40.909 0.00 0.00 0.00 4.35
106 107 5.399013 GTTTTCACCATTAAATCCCTCACG 58.601 41.667 0.00 0.00 0.00 4.35
107 108 5.399013 CGTTTTCACCATTAAATCCCTCAC 58.601 41.667 0.00 0.00 0.00 3.51
108 109 4.461081 CCGTTTTCACCATTAAATCCCTCA 59.539 41.667 0.00 0.00 0.00 3.86
109 110 4.703093 TCCGTTTTCACCATTAAATCCCTC 59.297 41.667 0.00 0.00 0.00 4.30
110 111 4.668636 TCCGTTTTCACCATTAAATCCCT 58.331 39.130 0.00 0.00 0.00 4.20
111 112 5.359860 AGATCCGTTTTCACCATTAAATCCC 59.640 40.000 0.00 0.00 0.00 3.85
112 113 6.451064 AGATCCGTTTTCACCATTAAATCC 57.549 37.500 0.00 0.00 0.00 3.01
113 114 7.535139 TGAAGATCCGTTTTCACCATTAAATC 58.465 34.615 0.00 0.00 0.00 2.17
114 115 7.461182 TGAAGATCCGTTTTCACCATTAAAT 57.539 32.000 0.00 0.00 0.00 1.40
115 116 6.885952 TGAAGATCCGTTTTCACCATTAAA 57.114 33.333 0.00 0.00 0.00 1.52
116 117 6.885952 TTGAAGATCCGTTTTCACCATTAA 57.114 33.333 0.00 0.00 33.36 1.40
117 118 6.183360 CGATTGAAGATCCGTTTTCACCATTA 60.183 38.462 0.00 0.00 33.36 1.90
118 119 5.391950 CGATTGAAGATCCGTTTTCACCATT 60.392 40.000 0.00 0.00 33.36 3.16
119 120 4.094887 CGATTGAAGATCCGTTTTCACCAT 59.905 41.667 0.00 0.00 33.36 3.55
120 121 3.435327 CGATTGAAGATCCGTTTTCACCA 59.565 43.478 0.00 0.00 33.36 4.17
121 122 3.181510 CCGATTGAAGATCCGTTTTCACC 60.182 47.826 0.00 0.00 33.36 4.02
122 123 3.682858 TCCGATTGAAGATCCGTTTTCAC 59.317 43.478 0.00 0.00 33.36 3.18
123 124 3.932822 TCCGATTGAAGATCCGTTTTCA 58.067 40.909 0.00 0.00 0.00 2.69
124 125 5.485662 AATCCGATTGAAGATCCGTTTTC 57.514 39.130 0.00 0.00 0.00 2.29
125 126 5.897377 AAATCCGATTGAAGATCCGTTTT 57.103 34.783 0.00 0.00 0.00 2.43
126 127 5.897377 AAAATCCGATTGAAGATCCGTTT 57.103 34.783 0.00 0.00 0.00 3.60
127 128 5.414454 TGAAAAATCCGATTGAAGATCCGTT 59.586 36.000 0.00 0.00 0.00 4.44
128 129 4.941263 TGAAAAATCCGATTGAAGATCCGT 59.059 37.500 0.00 0.00 0.00 4.69
129 130 5.484173 TGAAAAATCCGATTGAAGATCCG 57.516 39.130 0.00 0.00 0.00 4.18
130 131 7.483307 TGAATGAAAAATCCGATTGAAGATCC 58.517 34.615 0.00 0.00 0.00 3.36
131 132 8.915871 TTGAATGAAAAATCCGATTGAAGATC 57.084 30.769 0.00 0.00 0.00 2.75
132 133 9.709495 TTTTGAATGAAAAATCCGATTGAAGAT 57.291 25.926 0.00 0.00 30.25 2.40
133 134 9.195411 CTTTTGAATGAAAAATCCGATTGAAGA 57.805 29.630 0.00 0.00 33.04 2.87
134 135 9.195411 TCTTTTGAATGAAAAATCCGATTGAAG 57.805 29.630 0.00 0.00 33.04 3.02
135 136 9.709495 ATCTTTTGAATGAAAAATCCGATTGAA 57.291 25.926 0.00 0.00 33.04 2.69
204 205 1.595246 CGTCATGTTACCGCATGCATG 60.595 52.381 22.70 22.70 44.20 4.06
205 206 0.657312 CGTCATGTTACCGCATGCAT 59.343 50.000 19.57 7.65 44.20 3.96
206 207 0.672091 ACGTCATGTTACCGCATGCA 60.672 50.000 19.57 0.00 44.20 3.96
207 208 1.257936 CTACGTCATGTTACCGCATGC 59.742 52.381 7.91 7.91 44.20 4.06
208 209 2.536365 ACTACGTCATGTTACCGCATG 58.464 47.619 0.00 0.00 45.48 4.06
209 210 2.953466 ACTACGTCATGTTACCGCAT 57.047 45.000 0.00 0.00 0.00 4.73
210 211 3.129113 ACATACTACGTCATGTTACCGCA 59.871 43.478 0.00 0.00 31.32 5.69
211 212 3.484649 CACATACTACGTCATGTTACCGC 59.515 47.826 7.43 0.00 33.12 5.68
212 213 4.497966 CACACATACTACGTCATGTTACCG 59.502 45.833 7.43 0.00 33.12 4.02
213 214 4.266976 GCACACATACTACGTCATGTTACC 59.733 45.833 7.43 0.00 33.12 2.85
214 215 5.100259 AGCACACATACTACGTCATGTTAC 58.900 41.667 7.43 2.26 33.12 2.50
215 216 5.319140 AGCACACATACTACGTCATGTTA 57.681 39.130 7.43 0.00 33.12 2.41
216 217 4.188247 AGCACACATACTACGTCATGTT 57.812 40.909 7.43 0.00 33.12 2.71
217 218 3.868757 AGCACACATACTACGTCATGT 57.131 42.857 0.00 0.00 35.79 3.21
218 219 6.582672 CCTTATAGCACACATACTACGTCATG 59.417 42.308 0.00 0.00 0.00 3.07
219 220 6.678878 CCTTATAGCACACATACTACGTCAT 58.321 40.000 0.00 0.00 0.00 3.06
220 221 5.506815 GCCTTATAGCACACATACTACGTCA 60.507 44.000 0.00 0.00 0.00 4.35
221 222 4.916249 GCCTTATAGCACACATACTACGTC 59.084 45.833 0.00 0.00 0.00 4.34
222 223 4.556104 CGCCTTATAGCACACATACTACGT 60.556 45.833 0.00 0.00 0.00 3.57
223 224 3.912563 CGCCTTATAGCACACATACTACG 59.087 47.826 0.00 0.00 0.00 3.51
224 225 4.680110 CACGCCTTATAGCACACATACTAC 59.320 45.833 0.00 0.00 0.00 2.73
225 226 4.340097 ACACGCCTTATAGCACACATACTA 59.660 41.667 0.00 0.00 0.00 1.82
226 227 3.132289 ACACGCCTTATAGCACACATACT 59.868 43.478 0.00 0.00 0.00 2.12
227 228 3.245284 CACACGCCTTATAGCACACATAC 59.755 47.826 0.00 0.00 0.00 2.39
228 229 3.453424 CACACGCCTTATAGCACACATA 58.547 45.455 0.00 0.00 0.00 2.29
229 230 2.279741 CACACGCCTTATAGCACACAT 58.720 47.619 0.00 0.00 0.00 3.21
230 231 1.674519 CCACACGCCTTATAGCACACA 60.675 52.381 0.00 0.00 0.00 3.72
231 232 1.006832 CCACACGCCTTATAGCACAC 58.993 55.000 0.00 0.00 0.00 3.82
232 233 0.107897 CCCACACGCCTTATAGCACA 60.108 55.000 0.00 0.00 0.00 4.57
233 234 1.436983 GCCCACACGCCTTATAGCAC 61.437 60.000 0.00 0.00 0.00 4.40
234 235 1.153249 GCCCACACGCCTTATAGCA 60.153 57.895 0.00 0.00 0.00 3.49
235 236 2.244651 CGCCCACACGCCTTATAGC 61.245 63.158 0.00 0.00 0.00 2.97
236 237 1.594293 CCGCCCACACGCCTTATAG 60.594 63.158 0.00 0.00 0.00 1.31
237 238 2.502093 CCGCCCACACGCCTTATA 59.498 61.111 0.00 0.00 0.00 0.98
238 239 4.483243 CCCGCCCACACGCCTTAT 62.483 66.667 0.00 0.00 0.00 1.73
244 245 3.656045 GTCAAACCCGCCCACACG 61.656 66.667 0.00 0.00 0.00 4.49
245 246 2.203294 AGTCAAACCCGCCCACAC 60.203 61.111 0.00 0.00 0.00 3.82
246 247 2.112297 GAGTCAAACCCGCCCACA 59.888 61.111 0.00 0.00 0.00 4.17
247 248 3.047877 CGAGTCAAACCCGCCCAC 61.048 66.667 0.00 0.00 0.00 4.61
252 253 2.280524 TGGTGCGAGTCAAACCCG 60.281 61.111 8.40 0.00 32.70 5.28
253 254 1.525077 TGTGGTGCGAGTCAAACCC 60.525 57.895 8.40 2.17 32.70 4.11
254 255 1.647084 GTGTGGTGCGAGTCAAACC 59.353 57.895 4.57 4.57 34.38 3.27
255 256 1.275657 CGTGTGGTGCGAGTCAAAC 59.724 57.895 0.00 0.00 0.00 2.93
256 257 1.153529 ACGTGTGGTGCGAGTCAAA 60.154 52.632 0.00 0.00 0.00 2.69
257 258 1.880796 CACGTGTGGTGCGAGTCAA 60.881 57.895 7.58 0.00 40.33 3.18
258 259 2.279186 CACGTGTGGTGCGAGTCA 60.279 61.111 7.58 0.00 40.33 3.41
268 269 1.665735 GCTATTTTGCCCACACGTGTG 60.666 52.381 36.13 36.13 45.23 3.82
269 270 0.596082 GCTATTTTGCCCACACGTGT 59.404 50.000 17.22 17.22 0.00 4.49
270 271 0.595588 TGCTATTTTGCCCACACGTG 59.404 50.000 15.48 15.48 0.00 4.49
271 272 1.544724 ATGCTATTTTGCCCACACGT 58.455 45.000 0.00 0.00 0.00 4.49
272 273 2.094803 TGAATGCTATTTTGCCCACACG 60.095 45.455 0.00 0.00 0.00 4.49
273 274 3.253230 GTGAATGCTATTTTGCCCACAC 58.747 45.455 0.00 0.00 31.82 3.82
274 275 2.233431 GGTGAATGCTATTTTGCCCACA 59.767 45.455 0.00 0.00 32.53 4.17
275 276 2.497273 AGGTGAATGCTATTTTGCCCAC 59.503 45.455 0.00 0.00 0.00 4.61
293 294 0.841961 GGGGCGGTTAATTAGGAGGT 59.158 55.000 0.00 0.00 0.00 3.85
316 317 1.816183 CGCTCACCCCACCAGTTAAAA 60.816 52.381 0.00 0.00 0.00 1.52
508 567 4.394712 CTGCTTCTTCCGGCCGGT 62.395 66.667 41.57 0.00 36.47 5.28
536 610 1.462616 TATTTTGTCGCCTGCATGCT 58.537 45.000 20.33 0.00 0.00 3.79
551 625 6.119144 GCAATTCGGTGCGGATATATATTT 57.881 37.500 0.00 0.00 34.21 1.40
590 668 0.033228 GGCATCTCGGGTGATGAGAG 59.967 60.000 13.29 0.00 45.05 3.20
591 669 1.738346 CGGCATCTCGGGTGATGAGA 61.738 60.000 13.29 0.00 44.71 3.27
592 670 1.300465 CGGCATCTCGGGTGATGAG 60.300 63.158 13.29 4.33 44.71 2.90
593 671 1.613317 AACGGCATCTCGGGTGATGA 61.613 55.000 13.29 0.00 44.71 2.92
594 672 1.153369 AACGGCATCTCGGGTGATG 60.153 57.895 6.41 6.41 44.72 3.07
656 744 1.202940 GGAGGTGGAAAAGGCTGAACT 60.203 52.381 0.00 0.00 0.00 3.01
702 1086 4.143333 AATCGCGAGGACGGTGGG 62.143 66.667 16.66 0.00 40.15 4.61
706 1102 1.589196 GAAGGAATCGCGAGGACGG 60.589 63.158 16.66 0.00 40.15 4.79
950 1358 3.833650 TGTGGGTTTTATAGGACGACAGA 59.166 43.478 0.00 0.00 0.00 3.41
1314 1801 1.069378 AGATTCGTTTCGCCGTCGAC 61.069 55.000 5.18 5.18 45.43 4.20
1318 1805 0.320073 TTCCAGATTCGTTTCGCCGT 60.320 50.000 0.00 0.00 0.00 5.68
1392 1968 2.368685 CGGTTACAAAAAGCACACGAC 58.631 47.619 0.00 0.00 0.00 4.34
1393 1969 1.331138 CCGGTTACAAAAAGCACACGA 59.669 47.619 0.00 0.00 0.00 4.35
1394 1970 1.598430 CCCGGTTACAAAAAGCACACG 60.598 52.381 0.00 0.00 0.00 4.49
1423 2017 1.813786 GTGGGTTAATTAAGCGGCACA 59.186 47.619 21.69 12.90 34.68 4.57
1449 2043 2.224606 TGAGCATATTTAGCCAGCAGC 58.775 47.619 0.00 0.00 44.25 5.25
1450 2044 5.449107 AATTGAGCATATTTAGCCAGCAG 57.551 39.130 0.00 0.00 0.00 4.24
1535 2159 7.228706 ACTGTAGTTTTATTGCAGTAACAAGCT 59.771 33.333 0.46 0.00 39.28 3.74
1536 2160 7.360361 ACTGTAGTTTTATTGCAGTAACAAGC 58.640 34.615 0.46 0.00 39.28 4.01
1537 2161 9.730420 AAACTGTAGTTTTATTGCAGTAACAAG 57.270 29.630 0.46 0.00 45.07 3.16
1538 2162 9.509855 CAAACTGTAGTTTTATTGCAGTAACAA 57.490 29.630 7.25 0.00 45.07 2.83
1554 2180 9.862371 CTAGATGTGAATTAGTCAAACTGTAGT 57.138 33.333 0.00 0.00 38.23 2.73
1557 2183 9.376075 CATCTAGATGTGAATTAGTCAAACTGT 57.624 33.333 22.42 0.00 38.23 3.55
1585 2211 9.691362 GGAGCTTAAATGTGACATTCTTAAAAA 57.309 29.630 11.70 0.00 0.00 1.94
1586 2212 8.303876 GGGAGCTTAAATGTGACATTCTTAAAA 58.696 33.333 11.70 1.45 0.00 1.52
1587 2213 7.450014 TGGGAGCTTAAATGTGACATTCTTAAA 59.550 33.333 11.70 3.70 0.00 1.52
1588 2214 6.945435 TGGGAGCTTAAATGTGACATTCTTAA 59.055 34.615 11.70 6.76 0.00 1.85
1589 2215 6.374333 GTGGGAGCTTAAATGTGACATTCTTA 59.626 38.462 11.70 0.00 0.00 2.10
1590 2216 5.183904 GTGGGAGCTTAAATGTGACATTCTT 59.816 40.000 11.70 0.00 0.00 2.52
1591 2217 4.702131 GTGGGAGCTTAAATGTGACATTCT 59.298 41.667 11.70 4.12 0.00 2.40
1592 2218 4.458989 TGTGGGAGCTTAAATGTGACATTC 59.541 41.667 11.70 0.00 0.00 2.67
1593 2219 4.406456 TGTGGGAGCTTAAATGTGACATT 58.594 39.130 4.72 4.72 0.00 2.71
1594 2220 4.032960 TGTGGGAGCTTAAATGTGACAT 57.967 40.909 0.00 0.00 0.00 3.06
1595 2221 3.500448 TGTGGGAGCTTAAATGTGACA 57.500 42.857 0.00 0.00 0.00 3.58
1596 2222 4.846779 TTTGTGGGAGCTTAAATGTGAC 57.153 40.909 0.00 0.00 0.00 3.67
1597 2223 6.007076 TGTATTTGTGGGAGCTTAAATGTGA 58.993 36.000 0.00 0.00 0.00 3.58
1598 2224 6.266168 TGTATTTGTGGGAGCTTAAATGTG 57.734 37.500 0.00 0.00 0.00 3.21
1599 2225 8.588290 TTATGTATTTGTGGGAGCTTAAATGT 57.412 30.769 0.00 0.00 0.00 2.71
1600 2226 9.467258 CATTATGTATTTGTGGGAGCTTAAATG 57.533 33.333 0.00 0.00 0.00 2.32
1601 2227 8.143835 GCATTATGTATTTGTGGGAGCTTAAAT 58.856 33.333 0.00 0.00 0.00 1.40
1602 2228 7.123397 TGCATTATGTATTTGTGGGAGCTTAAA 59.877 33.333 0.00 0.00 0.00 1.52
1603 2229 6.605194 TGCATTATGTATTTGTGGGAGCTTAA 59.395 34.615 0.00 0.00 0.00 1.85
1604 2230 6.125719 TGCATTATGTATTTGTGGGAGCTTA 58.874 36.000 0.00 0.00 0.00 3.09
1605 2231 4.955450 TGCATTATGTATTTGTGGGAGCTT 59.045 37.500 0.00 0.00 0.00 3.74
1606 2232 4.535781 TGCATTATGTATTTGTGGGAGCT 58.464 39.130 0.00 0.00 0.00 4.09
1607 2233 4.916983 TGCATTATGTATTTGTGGGAGC 57.083 40.909 0.00 0.00 0.00 4.70
1608 2234 6.095300 TCTGTTGCATTATGTATTTGTGGGAG 59.905 38.462 0.00 0.00 0.00 4.30
1609 2235 5.948758 TCTGTTGCATTATGTATTTGTGGGA 59.051 36.000 0.00 0.00 0.00 4.37
1610 2236 6.206395 TCTGTTGCATTATGTATTTGTGGG 57.794 37.500 0.00 0.00 0.00 4.61
1611 2237 8.531622 TTTTCTGTTGCATTATGTATTTGTGG 57.468 30.769 0.00 0.00 0.00 4.17
1612 2238 9.796062 GTTTTTCTGTTGCATTATGTATTTGTG 57.204 29.630 0.00 0.00 0.00 3.33
1613 2239 9.539825 TGTTTTTCTGTTGCATTATGTATTTGT 57.460 25.926 0.00 0.00 0.00 2.83
1616 2242 9.979578 TCTTGTTTTTCTGTTGCATTATGTATT 57.020 25.926 0.00 0.00 0.00 1.89
1617 2243 9.979578 TTCTTGTTTTTCTGTTGCATTATGTAT 57.020 25.926 0.00 0.00 0.00 2.29
1618 2244 9.809096 TTTCTTGTTTTTCTGTTGCATTATGTA 57.191 25.926 0.00 0.00 0.00 2.29
1619 2245 8.715191 TTTCTTGTTTTTCTGTTGCATTATGT 57.285 26.923 0.00 0.00 0.00 2.29
1620 2246 9.985318 TTTTTCTTGTTTTTCTGTTGCATTATG 57.015 25.926 0.00 0.00 0.00 1.90
1643 2269 7.961325 TGCTCTTCTTTTTGTCTTTGTTTTT 57.039 28.000 0.00 0.00 0.00 1.94
1644 2270 9.651913 TTATGCTCTTCTTTTTGTCTTTGTTTT 57.348 25.926 0.00 0.00 0.00 2.43
1645 2271 9.651913 TTTATGCTCTTCTTTTTGTCTTTGTTT 57.348 25.926 0.00 0.00 0.00 2.83
1646 2272 9.651913 TTTTATGCTCTTCTTTTTGTCTTTGTT 57.348 25.926 0.00 0.00 0.00 2.83
1647 2273 9.087424 GTTTTATGCTCTTCTTTTTGTCTTTGT 57.913 29.630 0.00 0.00 0.00 2.83
1648 2274 9.086336 TGTTTTATGCTCTTCTTTTTGTCTTTG 57.914 29.630 0.00 0.00 0.00 2.77
1649 2275 9.305925 CTGTTTTATGCTCTTCTTTTTGTCTTT 57.694 29.630 0.00 0.00 0.00 2.52
1650 2276 8.686334 TCTGTTTTATGCTCTTCTTTTTGTCTT 58.314 29.630 0.00 0.00 0.00 3.01
1651 2277 8.225603 TCTGTTTTATGCTCTTCTTTTTGTCT 57.774 30.769 0.00 0.00 0.00 3.41
1652 2278 8.131731 ACTCTGTTTTATGCTCTTCTTTTTGTC 58.868 33.333 0.00 0.00 0.00 3.18
1653 2279 7.917505 CACTCTGTTTTATGCTCTTCTTTTTGT 59.082 33.333 0.00 0.00 0.00 2.83
1654 2280 8.131100 TCACTCTGTTTTATGCTCTTCTTTTTG 58.869 33.333 0.00 0.00 0.00 2.44
1655 2281 8.225603 TCACTCTGTTTTATGCTCTTCTTTTT 57.774 30.769 0.00 0.00 0.00 1.94
1656 2282 7.807977 TCACTCTGTTTTATGCTCTTCTTTT 57.192 32.000 0.00 0.00 0.00 2.27
1657 2283 7.283127 TGTTCACTCTGTTTTATGCTCTTCTTT 59.717 33.333 0.00 0.00 0.00 2.52
1658 2284 6.767902 TGTTCACTCTGTTTTATGCTCTTCTT 59.232 34.615 0.00 0.00 0.00 2.52
1659 2285 6.291377 TGTTCACTCTGTTTTATGCTCTTCT 58.709 36.000 0.00 0.00 0.00 2.85
1660 2286 6.545504 TGTTCACTCTGTTTTATGCTCTTC 57.454 37.500 0.00 0.00 0.00 2.87
1661 2287 6.712095 TGATGTTCACTCTGTTTTATGCTCTT 59.288 34.615 0.00 0.00 0.00 2.85
1662 2288 6.233434 TGATGTTCACTCTGTTTTATGCTCT 58.767 36.000 0.00 0.00 0.00 4.09
1663 2289 6.486253 TGATGTTCACTCTGTTTTATGCTC 57.514 37.500 0.00 0.00 0.00 4.26
1664 2290 5.106396 GCTGATGTTCACTCTGTTTTATGCT 60.106 40.000 0.00 0.00 0.00 3.79
1665 2291 5.091431 GCTGATGTTCACTCTGTTTTATGC 58.909 41.667 0.00 0.00 0.00 3.14
1666 2292 6.492007 AGCTGATGTTCACTCTGTTTTATG 57.508 37.500 0.00 0.00 0.00 1.90
1667 2293 8.097038 TCTAAGCTGATGTTCACTCTGTTTTAT 58.903 33.333 0.00 0.00 0.00 1.40
1668 2294 7.441836 TCTAAGCTGATGTTCACTCTGTTTTA 58.558 34.615 0.00 0.00 0.00 1.52
1669 2295 6.291377 TCTAAGCTGATGTTCACTCTGTTTT 58.709 36.000 0.00 0.00 0.00 2.43
1670 2296 5.858381 TCTAAGCTGATGTTCACTCTGTTT 58.142 37.500 0.00 0.00 0.00 2.83
1671 2297 5.244851 TCTCTAAGCTGATGTTCACTCTGTT 59.755 40.000 0.00 0.00 0.00 3.16
1672 2298 4.769488 TCTCTAAGCTGATGTTCACTCTGT 59.231 41.667 0.00 0.00 0.00 3.41
1673 2299 5.321959 TCTCTAAGCTGATGTTCACTCTG 57.678 43.478 0.00 0.00 0.00 3.35
1674 2300 7.287466 ACATATCTCTAAGCTGATGTTCACTCT 59.713 37.037 0.00 0.00 0.00 3.24
1675 2301 7.432869 ACATATCTCTAAGCTGATGTTCACTC 58.567 38.462 0.00 0.00 0.00 3.51
1676 2302 7.358770 ACATATCTCTAAGCTGATGTTCACT 57.641 36.000 0.00 0.00 0.00 3.41
1677 2303 6.644592 GGACATATCTCTAAGCTGATGTTCAC 59.355 42.308 0.00 0.00 0.00 3.18
1678 2304 6.552725 AGGACATATCTCTAAGCTGATGTTCA 59.447 38.462 0.00 0.00 0.00 3.18
1679 2305 6.991938 AGGACATATCTCTAAGCTGATGTTC 58.008 40.000 0.00 0.00 0.00 3.18
1680 2306 6.992664 AGGACATATCTCTAAGCTGATGTT 57.007 37.500 0.00 0.00 0.00 2.71
1681 2307 7.393234 GTCTAGGACATATCTCTAAGCTGATGT 59.607 40.741 0.00 0.00 32.09 3.06
1682 2308 7.413988 CGTCTAGGACATATCTCTAAGCTGATG 60.414 44.444 0.00 0.00 32.09 3.07
1683 2309 6.597672 CGTCTAGGACATATCTCTAAGCTGAT 59.402 42.308 0.00 0.00 32.09 2.90
1684 2310 5.935206 CGTCTAGGACATATCTCTAAGCTGA 59.065 44.000 0.00 0.00 32.09 4.26
1685 2311 5.123186 CCGTCTAGGACATATCTCTAAGCTG 59.877 48.000 0.00 0.00 45.00 4.24
1686 2312 5.013287 TCCGTCTAGGACATATCTCTAAGCT 59.987 44.000 0.00 0.00 45.98 3.74
1687 2313 5.247084 TCCGTCTAGGACATATCTCTAAGC 58.753 45.833 0.00 0.00 45.98 3.09
1701 2327 3.449737 TCAGTTTTATGGGTCCGTCTAGG 59.550 47.826 0.00 0.00 42.97 3.02
1702 2328 4.730949 TCAGTTTTATGGGTCCGTCTAG 57.269 45.455 0.00 0.00 0.00 2.43
1703 2329 6.781014 AGATATCAGTTTTATGGGTCCGTCTA 59.219 38.462 5.32 0.00 0.00 2.59
1704 2330 5.602978 AGATATCAGTTTTATGGGTCCGTCT 59.397 40.000 5.32 0.00 0.00 4.18
1705 2331 5.855045 AGATATCAGTTTTATGGGTCCGTC 58.145 41.667 5.32 0.00 0.00 4.79
1706 2332 5.888982 AGATATCAGTTTTATGGGTCCGT 57.111 39.130 5.32 0.00 0.00 4.69
1707 2333 6.288294 TCAAGATATCAGTTTTATGGGTCCG 58.712 40.000 5.32 0.00 0.00 4.79
1708 2334 7.939039 TGATCAAGATATCAGTTTTATGGGTCC 59.061 37.037 5.32 0.00 32.18 4.46
1709 2335 8.908786 TGATCAAGATATCAGTTTTATGGGTC 57.091 34.615 5.32 0.00 32.18 4.46
1710 2336 8.915057 CTGATCAAGATATCAGTTTTATGGGT 57.085 34.615 5.32 0.00 45.19 4.51
1935 2611 1.376609 GGATAGCCGGCCTGTTGTTG 61.377 60.000 26.15 0.00 0.00 3.33
1936 2612 1.077716 GGATAGCCGGCCTGTTGTT 60.078 57.895 26.15 4.77 0.00 2.83
1937 2613 1.847798 TTGGATAGCCGGCCTGTTGT 61.848 55.000 26.15 5.68 36.79 3.32
2099 2844 5.264395 CTCCCTCCCAAAATGTAAGATGTT 58.736 41.667 0.00 0.00 0.00 2.71
2110 2855 1.966845 CTACTCCCTCCCTCCCAAAA 58.033 55.000 0.00 0.00 0.00 2.44
2152 2903 8.864087 GCAGATGTATATATATGATGGAGTGGA 58.136 37.037 8.14 0.00 0.00 4.02
2153 2904 8.093307 GGCAGATGTATATATATGATGGAGTGG 58.907 40.741 8.14 0.00 0.00 4.00
2154 2905 8.093307 GGGCAGATGTATATATATGATGGAGTG 58.907 40.741 8.14 0.00 0.00 3.51
2155 2906 7.791282 TGGGCAGATGTATATATATGATGGAGT 59.209 37.037 8.14 0.00 0.00 3.85
2156 2907 8.093307 GTGGGCAGATGTATATATATGATGGAG 58.907 40.741 8.14 0.00 0.00 3.86
2157 2908 7.568366 TGTGGGCAGATGTATATATATGATGGA 59.432 37.037 8.14 0.00 0.00 3.41
2158 2909 7.738847 TGTGGGCAGATGTATATATATGATGG 58.261 38.462 8.14 0.00 0.00 3.51
2161 2912 8.991275 TGAATGTGGGCAGATGTATATATATGA 58.009 33.333 8.14 0.00 0.00 2.15
2162 2913 9.788889 ATGAATGTGGGCAGATGTATATATATG 57.211 33.333 5.44 0.10 0.00 1.78
2169 2920 9.537852 AATAAATATGAATGTGGGCAGATGTAT 57.462 29.630 0.00 0.00 0.00 2.29
2171 2922 7.844493 AATAAATATGAATGTGGGCAGATGT 57.156 32.000 0.00 0.00 0.00 3.06
2172 2923 9.797556 CATAATAAATATGAATGTGGGCAGATG 57.202 33.333 0.00 0.00 43.52 2.90
2173 2924 8.472413 GCATAATAAATATGAATGTGGGCAGAT 58.528 33.333 0.00 0.00 43.52 2.90
2174 2925 7.450944 TGCATAATAAATATGAATGTGGGCAGA 59.549 33.333 0.00 0.00 43.52 4.26
2175 2926 7.604549 TGCATAATAAATATGAATGTGGGCAG 58.395 34.615 0.00 0.00 43.52 4.85
2176 2927 7.536159 TGCATAATAAATATGAATGTGGGCA 57.464 32.000 0.00 0.00 43.52 5.36
2177 2928 9.090692 GAATGCATAATAAATATGAATGTGGGC 57.909 33.333 0.00 0.00 39.05 5.36
2193 2944 9.353431 TGAACACCATATAGTTGAATGCATAAT 57.647 29.630 0.00 0.00 0.00 1.28
2194 2945 8.744568 TGAACACCATATAGTTGAATGCATAA 57.255 30.769 0.00 0.00 0.00 1.90
2195 2946 8.785946 CATGAACACCATATAGTTGAATGCATA 58.214 33.333 0.00 0.00 33.31 3.14
2196 2947 7.654568 CATGAACACCATATAGTTGAATGCAT 58.345 34.615 0.00 0.00 33.31 3.96
2197 2948 6.459985 GCATGAACACCATATAGTTGAATGCA 60.460 38.462 16.92 0.00 40.53 3.96
2198 2949 5.916883 GCATGAACACCATATAGTTGAATGC 59.083 40.000 0.00 0.00 37.30 3.56
2205 2956 7.255242 GCAATTGTAGCATGAACACCATATAGT 60.255 37.037 7.40 0.00 33.31 2.12
2305 3058 8.548877 TCTTGTTTTCCTTAGGAGCTACATATT 58.451 33.333 0.00 0.00 31.21 1.28
2332 3086 2.229784 CTGTGGTGCTCAATTTCTTCCC 59.770 50.000 0.00 0.00 0.00 3.97
2337 3092 3.319122 AGTTTCCTGTGGTGCTCAATTTC 59.681 43.478 0.00 0.00 0.00 2.17
2393 3152 6.373495 CCATGAACATATCCAATGATCGACAT 59.627 38.462 0.00 0.00 41.45 3.06
2464 3223 9.679661 AAATTTAAGGGGCCTACATTTTAATTG 57.320 29.630 0.84 0.00 0.00 2.32
2592 3353 2.331805 CGATAGGAGACCGCACCG 59.668 66.667 0.00 0.00 0.00 4.94
2612 3378 2.552743 CGACCATAATGAGAGGCGAGTA 59.447 50.000 0.00 0.00 0.00 2.59
2627 3393 2.680352 ACTCCCTCACGCGACCAT 60.680 61.111 15.93 0.00 0.00 3.55
2701 3467 4.724293 TCATATGTGATTACCCCTTGTCCA 59.276 41.667 1.90 0.00 0.00 4.02
2713 3479 6.166279 ACTTGTCTTGACGTCATATGTGATT 58.834 36.000 20.80 0.00 36.60 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.