Multiple sequence alignment - TraesCS3D01G062300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G062300 chr3D 100.000 2669 0 0 1 2669 27552182 27549514 0.000000e+00 4929.0
1 TraesCS3D01G062300 chr3D 87.507 1689 134 35 700 2385 27943792 27945406 0.000000e+00 1879.0
2 TraesCS3D01G062300 chr3D 92.262 168 13 0 156 323 305652695 305652862 3.430000e-59 239.0
3 TraesCS3D01G062300 chr3D 83.621 116 17 2 2527 2641 27668686 27668800 1.010000e-19 108.0
4 TraesCS3D01G062300 chr3D 86.458 96 8 2 557 647 384726621 384726716 1.690000e-17 100.0
5 TraesCS3D01G062300 chr3B 94.494 1998 89 6 637 2631 46033693 46031714 0.000000e+00 3061.0
6 TraesCS3D01G062300 chr3B 88.707 1160 92 13 667 1813 46903767 46904900 0.000000e+00 1380.0
7 TraesCS3D01G062300 chr3B 88.107 782 73 3 1014 1795 46932191 46932952 0.000000e+00 911.0
8 TraesCS3D01G062300 chr3B 92.714 398 28 1 787 1184 46793233 46793629 8.290000e-160 573.0
9 TraesCS3D01G062300 chr3B 90.845 142 12 1 422 562 46033834 46033693 3.510000e-44 189.0
10 TraesCS3D01G062300 chr3B 94.444 90 1 3 61 148 46034254 46034167 4.630000e-28 135.0
11 TraesCS3D01G062300 chr3B 87.500 96 6 2 550 640 72458370 72458276 3.630000e-19 106.0
12 TraesCS3D01G062300 chr3A 94.383 1638 72 8 639 2273 37651566 37649946 0.000000e+00 2497.0
13 TraesCS3D01G062300 chr3A 87.207 1704 143 32 701 2403 37827696 37826067 0.000000e+00 1869.0
14 TraesCS3D01G062300 chr3A 82.171 1520 163 39 804 2248 38124779 38126265 0.000000e+00 1206.0
15 TraesCS3D01G062300 chr3A 97.035 371 11 0 2299 2669 37649004 37648634 2.260000e-175 625.0
16 TraesCS3D01G062300 chr3A 91.626 203 16 1 2439 2640 37826073 37825871 2.020000e-71 279.0
17 TraesCS3D01G062300 chr3A 92.727 165 11 1 158 322 641879518 641879681 1.240000e-58 237.0
18 TraesCS3D01G062300 chr3A 89.922 129 10 2 440 565 37651689 37651561 2.130000e-36 163.0
19 TraesCS3D01G062300 chr3A 93.333 90 2 3 61 148 37652101 37652014 2.160000e-26 130.0
20 TraesCS3D01G062300 chrUn 88.055 653 64 1 1020 1672 287642991 287642353 0.000000e+00 761.0
21 TraesCS3D01G062300 chrUn 86.290 124 17 0 859 982 287643115 287642992 4.630000e-28 135.0
22 TraesCS3D01G062300 chrUn 79.545 132 15 5 2111 2231 347229055 347229185 1.700000e-12 84.2
23 TraesCS3D01G062300 chr4D 95.808 167 7 0 156 322 9605782 9605616 1.220000e-68 270.0
24 TraesCS3D01G062300 chr7D 93.413 167 11 0 156 322 442169110 442168944 5.710000e-62 248.0
25 TraesCS3D01G062300 chr7D 92.771 166 11 1 158 323 528100624 528100788 3.430000e-59 239.0
26 TraesCS3D01G062300 chr7D 92.025 163 12 1 158 320 89945197 89945036 7.430000e-56 228.0
27 TraesCS3D01G062300 chr5A 92.857 168 11 1 158 325 491579407 491579573 2.650000e-60 243.0
28 TraesCS3D01G062300 chr5A 93.293 164 10 1 158 321 30055685 30055847 9.550000e-60 241.0
29 TraesCS3D01G062300 chr4A 90.116 172 15 1 158 329 688832533 688832364 3.460000e-54 222.0
30 TraesCS3D01G062300 chr5D 88.776 98 6 2 558 650 382868498 382868401 6.040000e-22 115.0
31 TraesCS3D01G062300 chr5D 90.000 90 4 1 557 641 509559206 509559295 7.810000e-21 111.0
32 TraesCS3D01G062300 chr6D 90.805 87 3 1 559 640 146072821 146072907 7.810000e-21 111.0
33 TraesCS3D01G062300 chr1D 89.011 91 8 1 559 647 430572866 430572956 7.810000e-21 111.0
34 TraesCS3D01G062300 chr1A 88.421 95 5 3 559 648 584994024 584993931 2.810000e-20 110.0
35 TraesCS3D01G062300 chr2D 87.629 97 6 3 557 648 108886670 108886575 1.010000e-19 108.0
36 TraesCS3D01G062300 chr2D 83.478 115 10 5 533 640 619321121 619321009 6.080000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G062300 chr3D 27549514 27552182 2668 True 4929.000000 4929 100.00000 1 2669 1 chr3D.!!$R1 2668
1 TraesCS3D01G062300 chr3D 27943792 27945406 1614 False 1879.000000 1879 87.50700 700 2385 1 chr3D.!!$F2 1685
2 TraesCS3D01G062300 chr3B 46903767 46904900 1133 False 1380.000000 1380 88.70700 667 1813 1 chr3B.!!$F2 1146
3 TraesCS3D01G062300 chr3B 46031714 46034254 2540 True 1128.333333 3061 93.26100 61 2631 3 chr3B.!!$R2 2570
4 TraesCS3D01G062300 chr3B 46932191 46932952 761 False 911.000000 911 88.10700 1014 1795 1 chr3B.!!$F3 781
5 TraesCS3D01G062300 chr3A 38124779 38126265 1486 False 1206.000000 1206 82.17100 804 2248 1 chr3A.!!$F1 1444
6 TraesCS3D01G062300 chr3A 37825871 37827696 1825 True 1074.000000 1869 89.41650 701 2640 2 chr3A.!!$R2 1939
7 TraesCS3D01G062300 chr3A 37648634 37652101 3467 True 853.750000 2497 93.66825 61 2669 4 chr3A.!!$R1 2608
8 TraesCS3D01G062300 chrUn 287642353 287643115 762 True 448.000000 761 87.17250 859 1672 2 chrUn.!!$R1 813

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
223 224 0.036765 TGCCTTAACGCTGGGTACTG 60.037 55.0 0.0 0.0 0.0 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2219 2597 1.133294 GGGAAAAGAAAGGGACCACCA 60.133 52.381 0.0 0.0 43.89 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 8.693120 TTTTTAAACAGGGTTTTGTTTTTCCT 57.307 26.923 9.12 0.00 46.18 3.36
40 41 9.788889 TTTTTAAACAGGGTTTTGTTTTTCCTA 57.211 25.926 9.12 0.00 46.18 2.94
41 42 9.961264 TTTTAAACAGGGTTTTGTTTTTCCTAT 57.039 25.926 9.12 0.00 46.18 2.57
42 43 9.961264 TTTAAACAGGGTTTTGTTTTTCCTATT 57.039 25.926 9.12 0.00 46.18 1.73
44 45 8.951787 AAACAGGGTTTTGTTTTTCCTATTAC 57.048 30.769 0.00 0.00 46.18 1.89
45 46 7.058023 ACAGGGTTTTGTTTTTCCTATTACC 57.942 36.000 0.00 0.00 0.00 2.85
46 47 6.153756 CAGGGTTTTGTTTTTCCTATTACCG 58.846 40.000 0.00 0.00 0.00 4.02
47 48 6.016108 CAGGGTTTTGTTTTTCCTATTACCGA 60.016 38.462 0.00 0.00 0.00 4.69
48 49 6.722590 AGGGTTTTGTTTTTCCTATTACCGAT 59.277 34.615 0.00 0.00 0.00 4.18
49 50 7.031372 GGGTTTTGTTTTTCCTATTACCGATC 58.969 38.462 0.00 0.00 0.00 3.69
50 51 7.031372 GGTTTTGTTTTTCCTATTACCGATCC 58.969 38.462 0.00 0.00 0.00 3.36
51 52 7.094075 GGTTTTGTTTTTCCTATTACCGATCCT 60.094 37.037 0.00 0.00 0.00 3.24
52 53 7.619964 TTTGTTTTTCCTATTACCGATCCTC 57.380 36.000 0.00 0.00 0.00 3.71
53 54 6.555463 TGTTTTTCCTATTACCGATCCTCT 57.445 37.500 0.00 0.00 0.00 3.69
54 55 6.346096 TGTTTTTCCTATTACCGATCCTCTG 58.654 40.000 0.00 0.00 0.00 3.35
55 56 5.546621 TTTTCCTATTACCGATCCTCTGG 57.453 43.478 0.00 0.00 0.00 3.86
56 57 2.526432 TCCTATTACCGATCCTCTGGC 58.474 52.381 0.00 0.00 0.00 4.85
57 58 2.110188 TCCTATTACCGATCCTCTGGCT 59.890 50.000 0.00 0.00 0.00 4.75
58 59 2.494073 CCTATTACCGATCCTCTGGCTC 59.506 54.545 0.00 0.00 0.00 4.70
59 60 2.088104 ATTACCGATCCTCTGGCTCA 57.912 50.000 0.00 0.00 0.00 4.26
60 61 1.112113 TTACCGATCCTCTGGCTCAC 58.888 55.000 0.00 0.00 0.00 3.51
61 62 0.259065 TACCGATCCTCTGGCTCACT 59.741 55.000 0.00 0.00 0.00 3.41
62 63 1.326213 ACCGATCCTCTGGCTCACTG 61.326 60.000 0.00 0.00 0.00 3.66
63 64 1.227205 CGATCCTCTGGCTCACTGC 60.227 63.158 0.00 0.00 41.94 4.40
64 65 1.903294 GATCCTCTGGCTCACTGCA 59.097 57.895 0.00 0.00 45.15 4.41
65 66 0.461693 GATCCTCTGGCTCACTGCAC 60.462 60.000 0.00 0.00 45.15 4.57
66 67 0.908656 ATCCTCTGGCTCACTGCACT 60.909 55.000 0.00 0.00 45.15 4.40
67 68 1.375652 CCTCTGGCTCACTGCACTG 60.376 63.158 0.00 0.00 45.15 3.66
111 112 1.871039 CGAGTGGTTTGGTAGGTTGTG 59.129 52.381 0.00 0.00 0.00 3.33
130 131 1.497286 TGGGTGTTGGGCTTACTTTCT 59.503 47.619 0.00 0.00 0.00 2.52
143 144 2.550830 ACTTTCTGATTGCGAGTGGT 57.449 45.000 0.00 0.00 0.00 4.16
145 146 1.734465 CTTTCTGATTGCGAGTGGTCC 59.266 52.381 0.00 0.00 0.00 4.46
148 149 1.903877 CTGATTGCGAGTGGTCCCCT 61.904 60.000 0.00 0.00 0.00 4.79
149 150 1.299976 GATTGCGAGTGGTCCCCTT 59.700 57.895 0.00 0.00 0.00 3.95
150 151 0.744771 GATTGCGAGTGGTCCCCTTC 60.745 60.000 0.00 0.00 0.00 3.46
151 152 1.488705 ATTGCGAGTGGTCCCCTTCA 61.489 55.000 0.00 0.00 0.00 3.02
152 153 1.488705 TTGCGAGTGGTCCCCTTCAT 61.489 55.000 0.00 0.00 0.00 2.57
153 154 1.450312 GCGAGTGGTCCCCTTCATG 60.450 63.158 0.00 0.00 0.00 3.07
154 155 1.450312 CGAGTGGTCCCCTTCATGC 60.450 63.158 0.00 0.00 0.00 4.06
155 156 1.450312 GAGTGGTCCCCTTCATGCG 60.450 63.158 0.00 0.00 0.00 4.73
156 157 3.134127 GTGGTCCCCTTCATGCGC 61.134 66.667 0.00 0.00 0.00 6.09
157 158 4.424711 TGGTCCCCTTCATGCGCC 62.425 66.667 4.18 0.00 0.00 6.53
158 159 4.424711 GGTCCCCTTCATGCGCCA 62.425 66.667 4.18 0.00 0.00 5.69
159 160 2.124151 GTCCCCTTCATGCGCCAT 60.124 61.111 4.18 0.00 0.00 4.40
160 161 2.124193 TCCCCTTCATGCGCCATG 60.124 61.111 4.18 9.25 42.60 3.66
170 171 4.291540 TCATGCGCCATGAATTTAGAAC 57.708 40.909 16.67 0.00 46.17 3.01
171 172 3.066621 TCATGCGCCATGAATTTAGAACC 59.933 43.478 16.67 0.00 46.17 3.62
172 173 2.722094 TGCGCCATGAATTTAGAACCT 58.278 42.857 4.18 0.00 0.00 3.50
173 174 2.682856 TGCGCCATGAATTTAGAACCTC 59.317 45.455 4.18 0.00 0.00 3.85
174 175 2.033424 GCGCCATGAATTTAGAACCTCC 59.967 50.000 0.00 0.00 0.00 4.30
175 176 3.278574 CGCCATGAATTTAGAACCTCCA 58.721 45.455 0.00 0.00 0.00 3.86
176 177 3.694072 CGCCATGAATTTAGAACCTCCAA 59.306 43.478 0.00 0.00 0.00 3.53
177 178 4.339247 CGCCATGAATTTAGAACCTCCAAT 59.661 41.667 0.00 0.00 0.00 3.16
178 179 5.594926 GCCATGAATTTAGAACCTCCAATG 58.405 41.667 0.00 0.00 0.00 2.82
179 180 5.127682 GCCATGAATTTAGAACCTCCAATGT 59.872 40.000 0.00 0.00 0.00 2.71
180 181 6.681368 GCCATGAATTTAGAACCTCCAATGTC 60.681 42.308 0.00 0.00 0.00 3.06
181 182 6.458751 CCATGAATTTAGAACCTCCAATGTCG 60.459 42.308 0.00 0.00 0.00 4.35
182 183 5.800296 TGAATTTAGAACCTCCAATGTCGA 58.200 37.500 0.00 0.00 0.00 4.20
183 184 5.874810 TGAATTTAGAACCTCCAATGTCGAG 59.125 40.000 0.00 0.00 0.00 4.04
187 188 4.844420 CCTCCAATGTCGAGGCTC 57.156 61.111 3.87 3.87 40.55 4.70
188 189 1.900351 CCTCCAATGTCGAGGCTCA 59.100 57.895 15.95 0.00 40.55 4.26
189 190 0.460987 CCTCCAATGTCGAGGCTCAC 60.461 60.000 15.95 12.07 40.55 3.51
190 191 0.247460 CTCCAATGTCGAGGCTCACA 59.753 55.000 15.95 17.06 0.00 3.58
191 192 0.684535 TCCAATGTCGAGGCTCACAA 59.315 50.000 15.95 0.00 0.00 3.33
192 193 1.071542 TCCAATGTCGAGGCTCACAAA 59.928 47.619 15.95 0.00 0.00 2.83
193 194 1.197721 CCAATGTCGAGGCTCACAAAC 59.802 52.381 15.95 7.29 0.00 2.93
194 195 2.146342 CAATGTCGAGGCTCACAAACT 58.854 47.619 15.95 4.99 0.00 2.66
195 196 2.549754 CAATGTCGAGGCTCACAAACTT 59.450 45.455 15.95 6.89 0.00 2.66
196 197 1.581934 TGTCGAGGCTCACAAACTTG 58.418 50.000 15.95 0.00 0.00 3.16
197 198 0.235926 GTCGAGGCTCACAAACTTGC 59.764 55.000 15.95 0.00 0.00 4.01
198 199 0.179059 TCGAGGCTCACAAACTTGCA 60.179 50.000 15.95 0.00 0.00 4.08
199 200 0.662619 CGAGGCTCACAAACTTGCAA 59.337 50.000 15.95 0.00 0.00 4.08
200 201 1.065401 CGAGGCTCACAAACTTGCAAA 59.935 47.619 15.95 0.00 0.00 3.68
216 217 1.621107 CAAAGCATGCCTTAACGCTG 58.379 50.000 15.66 0.00 34.26 5.18
217 218 0.527565 AAAGCATGCCTTAACGCTGG 59.472 50.000 15.66 0.00 34.26 4.85
218 219 1.315257 AAGCATGCCTTAACGCTGGG 61.315 55.000 15.66 0.00 34.26 4.45
219 220 2.046285 GCATGCCTTAACGCTGGGT 61.046 57.895 6.36 0.00 0.00 4.51
220 221 0.746563 GCATGCCTTAACGCTGGGTA 60.747 55.000 6.36 0.00 0.00 3.69
221 222 1.014352 CATGCCTTAACGCTGGGTAC 58.986 55.000 0.00 0.00 0.00 3.34
222 223 0.909623 ATGCCTTAACGCTGGGTACT 59.090 50.000 0.00 0.00 0.00 2.73
223 224 0.036765 TGCCTTAACGCTGGGTACTG 60.037 55.000 0.00 0.00 0.00 2.74
224 225 0.743345 GCCTTAACGCTGGGTACTGG 60.743 60.000 0.00 2.06 0.00 4.00
225 226 0.611714 CCTTAACGCTGGGTACTGGT 59.388 55.000 0.00 0.00 0.00 4.00
226 227 1.405121 CCTTAACGCTGGGTACTGGTC 60.405 57.143 0.00 0.00 0.00 4.02
227 228 0.244450 TTAACGCTGGGTACTGGTCG 59.756 55.000 0.00 0.00 0.00 4.79
228 229 2.216750 TAACGCTGGGTACTGGTCGC 62.217 60.000 0.00 0.00 0.00 5.19
229 230 4.814294 CGCTGGGTACTGGTCGCC 62.814 72.222 0.00 0.00 0.00 5.54
230 231 3.702048 GCTGGGTACTGGTCGCCA 61.702 66.667 0.00 0.00 0.00 5.69
231 232 3.031417 GCTGGGTACTGGTCGCCAT 62.031 63.158 0.00 0.00 30.82 4.40
232 233 1.153369 CTGGGTACTGGTCGCCATG 60.153 63.158 0.00 0.00 30.82 3.66
233 234 2.513897 GGGTACTGGTCGCCATGC 60.514 66.667 0.00 0.00 30.82 4.06
234 235 2.584608 GGTACTGGTCGCCATGCT 59.415 61.111 0.00 0.00 30.82 3.79
235 236 1.078426 GGTACTGGTCGCCATGCTT 60.078 57.895 0.00 0.00 30.82 3.91
236 237 1.369091 GGTACTGGTCGCCATGCTTG 61.369 60.000 0.00 0.00 30.82 4.01
237 238 1.078497 TACTGGTCGCCATGCTTGG 60.078 57.895 14.22 14.22 46.66 3.61
238 239 1.836999 TACTGGTCGCCATGCTTGGT 61.837 55.000 19.05 1.14 45.57 3.67
239 240 1.973281 CTGGTCGCCATGCTTGGTT 60.973 57.895 19.05 0.00 45.57 3.67
240 241 1.526575 CTGGTCGCCATGCTTGGTTT 61.527 55.000 19.05 0.00 45.57 3.27
241 242 1.080569 GGTCGCCATGCTTGGTTTG 60.081 57.895 19.05 10.15 45.57 2.93
242 243 1.080569 GTCGCCATGCTTGGTTTGG 60.081 57.895 19.05 7.45 45.57 3.28
243 244 1.530419 TCGCCATGCTTGGTTTGGT 60.530 52.632 19.05 0.00 45.57 3.67
244 245 1.080569 CGCCATGCTTGGTTTGGTC 60.081 57.895 19.05 1.57 45.57 4.02
245 246 1.804396 CGCCATGCTTGGTTTGGTCA 61.804 55.000 19.05 0.00 45.57 4.02
246 247 0.037975 GCCATGCTTGGTTTGGTCAG 60.038 55.000 19.05 0.00 45.57 3.51
247 248 1.331214 CCATGCTTGGTTTGGTCAGT 58.669 50.000 10.48 0.00 38.30 3.41
248 249 1.270550 CCATGCTTGGTTTGGTCAGTC 59.729 52.381 10.48 0.00 38.30 3.51
249 250 1.270550 CATGCTTGGTTTGGTCAGTCC 59.729 52.381 0.00 0.00 0.00 3.85
250 251 0.817634 TGCTTGGTTTGGTCAGTCCG 60.818 55.000 0.00 0.00 39.52 4.79
251 252 1.515521 GCTTGGTTTGGTCAGTCCGG 61.516 60.000 0.00 0.00 39.52 5.14
252 253 0.107831 CTTGGTTTGGTCAGTCCGGA 59.892 55.000 0.00 0.00 39.52 5.14
253 254 0.107831 TTGGTTTGGTCAGTCCGGAG 59.892 55.000 3.06 0.00 39.52 4.63
254 255 0.761323 TGGTTTGGTCAGTCCGGAGA 60.761 55.000 3.06 0.00 39.52 3.71
255 256 0.613777 GGTTTGGTCAGTCCGGAGAT 59.386 55.000 3.06 0.00 39.52 2.75
256 257 1.405661 GGTTTGGTCAGTCCGGAGATC 60.406 57.143 3.06 0.00 39.52 2.75
257 258 1.550976 GTTTGGTCAGTCCGGAGATCT 59.449 52.381 3.06 0.00 39.52 2.75
258 259 1.938585 TTGGTCAGTCCGGAGATCTT 58.061 50.000 3.06 0.00 39.52 2.40
259 260 1.186200 TGGTCAGTCCGGAGATCTTG 58.814 55.000 3.06 0.00 39.52 3.02
260 261 1.187087 GGTCAGTCCGGAGATCTTGT 58.813 55.000 3.06 0.00 0.00 3.16
261 262 1.550976 GGTCAGTCCGGAGATCTTGTT 59.449 52.381 3.06 0.00 0.00 2.83
262 263 2.028020 GGTCAGTCCGGAGATCTTGTTT 60.028 50.000 3.06 0.00 0.00 2.83
263 264 3.557264 GGTCAGTCCGGAGATCTTGTTTT 60.557 47.826 3.06 0.00 0.00 2.43
264 265 3.680458 GTCAGTCCGGAGATCTTGTTTTC 59.320 47.826 3.06 0.00 0.00 2.29
265 266 2.668457 CAGTCCGGAGATCTTGTTTTCG 59.332 50.000 3.06 0.00 0.00 3.46
266 267 2.299297 AGTCCGGAGATCTTGTTTTCGT 59.701 45.455 3.06 0.00 0.00 3.85
267 268 2.666994 GTCCGGAGATCTTGTTTTCGTC 59.333 50.000 3.06 0.00 0.00 4.20
268 269 2.000447 CCGGAGATCTTGTTTTCGTCC 59.000 52.381 0.00 0.00 0.00 4.79
269 270 2.000447 CGGAGATCTTGTTTTCGTCCC 59.000 52.381 0.00 0.00 0.00 4.46
270 271 2.353803 CGGAGATCTTGTTTTCGTCCCT 60.354 50.000 0.00 0.00 0.00 4.20
271 272 3.003480 GGAGATCTTGTTTTCGTCCCTG 58.997 50.000 0.00 0.00 0.00 4.45
272 273 3.557264 GGAGATCTTGTTTTCGTCCCTGT 60.557 47.826 0.00 0.00 0.00 4.00
273 274 4.322499 GGAGATCTTGTTTTCGTCCCTGTA 60.322 45.833 0.00 0.00 0.00 2.74
274 275 5.223449 AGATCTTGTTTTCGTCCCTGTAA 57.777 39.130 0.00 0.00 0.00 2.41
275 276 5.617252 AGATCTTGTTTTCGTCCCTGTAAA 58.383 37.500 0.00 0.00 0.00 2.01
276 277 5.469084 AGATCTTGTTTTCGTCCCTGTAAAC 59.531 40.000 0.00 0.00 0.00 2.01
277 278 3.878699 TCTTGTTTTCGTCCCTGTAAACC 59.121 43.478 0.00 0.00 31.25 3.27
278 279 3.564053 TGTTTTCGTCCCTGTAAACCT 57.436 42.857 0.00 0.00 31.25 3.50
279 280 3.469739 TGTTTTCGTCCCTGTAAACCTC 58.530 45.455 0.00 0.00 31.25 3.85
280 281 2.443887 TTTCGTCCCTGTAAACCTCG 57.556 50.000 0.00 0.00 0.00 4.63
281 282 1.331214 TTCGTCCCTGTAAACCTCGT 58.669 50.000 0.00 0.00 0.00 4.18
282 283 0.599558 TCGTCCCTGTAAACCTCGTG 59.400 55.000 0.00 0.00 0.00 4.35
283 284 0.599558 CGTCCCTGTAAACCTCGTGA 59.400 55.000 0.00 0.00 0.00 4.35
284 285 1.668047 CGTCCCTGTAAACCTCGTGAC 60.668 57.143 0.00 0.00 0.00 3.67
285 286 0.599558 TCCCTGTAAACCTCGTGACG 59.400 55.000 0.00 0.00 0.00 4.35
286 287 0.389426 CCCTGTAAACCTCGTGACGG 60.389 60.000 4.70 0.00 0.00 4.79
287 288 0.599558 CCTGTAAACCTCGTGACGGA 59.400 55.000 4.70 0.00 0.00 4.69
288 289 1.203994 CCTGTAAACCTCGTGACGGAT 59.796 52.381 4.70 0.00 0.00 4.18
289 290 2.259618 CTGTAAACCTCGTGACGGATG 58.740 52.381 4.70 0.00 0.00 3.51
290 291 1.887854 TGTAAACCTCGTGACGGATGA 59.112 47.619 4.70 0.00 0.00 2.92
291 292 2.296752 TGTAAACCTCGTGACGGATGAA 59.703 45.455 4.70 0.00 0.00 2.57
292 293 2.762535 AAACCTCGTGACGGATGAAT 57.237 45.000 4.70 0.00 0.00 2.57
293 294 3.880047 AAACCTCGTGACGGATGAATA 57.120 42.857 4.70 0.00 0.00 1.75
294 295 3.880047 AACCTCGTGACGGATGAATAA 57.120 42.857 4.70 0.00 0.00 1.40
295 296 3.880047 ACCTCGTGACGGATGAATAAA 57.120 42.857 4.70 0.00 0.00 1.40
296 297 4.196626 ACCTCGTGACGGATGAATAAAA 57.803 40.909 4.70 0.00 0.00 1.52
297 298 4.571919 ACCTCGTGACGGATGAATAAAAA 58.428 39.130 4.70 0.00 0.00 1.94
298 299 4.630069 ACCTCGTGACGGATGAATAAAAAG 59.370 41.667 4.70 0.00 0.00 2.27
299 300 4.494199 CCTCGTGACGGATGAATAAAAAGC 60.494 45.833 4.70 0.00 0.00 3.51
300 301 4.250464 TCGTGACGGATGAATAAAAAGCT 58.750 39.130 4.70 0.00 0.00 3.74
301 302 4.693566 TCGTGACGGATGAATAAAAAGCTT 59.306 37.500 4.70 0.00 0.00 3.74
302 303 5.180492 TCGTGACGGATGAATAAAAAGCTTT 59.820 36.000 5.69 5.69 0.00 3.51
303 304 5.283717 CGTGACGGATGAATAAAAAGCTTTG 59.716 40.000 13.54 0.00 0.00 2.77
304 305 6.149633 GTGACGGATGAATAAAAAGCTTTGT 58.850 36.000 13.54 10.19 0.00 2.83
305 306 6.088085 GTGACGGATGAATAAAAAGCTTTGTG 59.912 38.462 13.54 0.00 0.00 3.33
306 307 5.469479 ACGGATGAATAAAAAGCTTTGTGG 58.531 37.500 13.54 0.00 0.00 4.17
307 308 4.864247 CGGATGAATAAAAAGCTTTGTGGG 59.136 41.667 13.54 0.00 0.00 4.61
308 309 5.566627 CGGATGAATAAAAAGCTTTGTGGGT 60.567 40.000 13.54 0.00 0.00 4.51
309 310 6.230472 GGATGAATAAAAAGCTTTGTGGGTT 58.770 36.000 13.54 5.37 0.00 4.11
310 311 6.710295 GGATGAATAAAAAGCTTTGTGGGTTT 59.290 34.615 13.54 4.61 38.34 3.27
311 312 6.917217 TGAATAAAAAGCTTTGTGGGTTTG 57.083 33.333 13.54 0.00 37.07 2.93
312 313 5.295540 TGAATAAAAAGCTTTGTGGGTTTGC 59.704 36.000 13.54 0.00 37.07 3.68
313 314 2.036958 AAAAGCTTTGTGGGTTTGCC 57.963 45.000 13.54 0.00 37.07 4.52
314 315 1.203237 AAAGCTTTGTGGGTTTGCCT 58.797 45.000 11.80 0.00 35.89 4.75
315 316 2.080654 AAGCTTTGTGGGTTTGCCTA 57.919 45.000 0.00 0.00 34.45 3.93
316 317 2.080654 AGCTTTGTGGGTTTGCCTAA 57.919 45.000 0.00 0.00 34.45 2.69
317 318 2.393646 AGCTTTGTGGGTTTGCCTAAA 58.606 42.857 0.00 0.00 34.45 1.85
318 319 2.769095 AGCTTTGTGGGTTTGCCTAAAA 59.231 40.909 0.00 0.00 34.45 1.52
319 320 3.198853 AGCTTTGTGGGTTTGCCTAAAAA 59.801 39.130 0.00 0.00 32.44 1.94
343 344 1.930908 AAACTACCGCCGACGAGAGG 61.931 60.000 0.00 0.06 43.93 3.69
382 383 2.413765 GGCGATGTCGACCCTCTC 59.586 66.667 14.12 4.94 42.67 3.20
407 408 2.625823 CCTTCCGTTTGCACGCCAT 61.626 57.895 0.00 0.00 45.72 4.40
410 411 1.448119 TTCCGTTTGCACGCCATTGA 61.448 50.000 0.00 0.00 45.72 2.57
423 424 3.134458 CGCCATTGATCTTCCCTACTTC 58.866 50.000 0.00 0.00 0.00 3.01
426 427 3.388024 CCATTGATCTTCCCTACTTCCGA 59.612 47.826 0.00 0.00 0.00 4.55
428 429 4.737855 TTGATCTTCCCTACTTCCGAAG 57.262 45.455 6.59 6.59 35.39 3.79
429 430 2.431057 TGATCTTCCCTACTTCCGAAGC 59.569 50.000 8.11 0.00 34.32 3.86
434 669 0.460987 CCCTACTTCCGAAGCAGCAG 60.461 60.000 8.11 1.20 0.00 4.24
435 670 0.532573 CCTACTTCCGAAGCAGCAGA 59.467 55.000 8.11 0.00 0.00 4.26
546 804 4.831155 CCTCCTCGGATACCATTACTAACA 59.169 45.833 0.00 0.00 33.16 2.41
561 819 7.120579 CCATTACTAACAACAGATTGCCAACTA 59.879 37.037 0.00 0.00 39.66 2.24
562 820 5.941948 ACTAACAACAGATTGCCAACTAC 57.058 39.130 0.00 0.00 39.66 2.73
563 821 5.621193 ACTAACAACAGATTGCCAACTACT 58.379 37.500 0.00 0.00 39.66 2.57
564 822 5.701290 ACTAACAACAGATTGCCAACTACTC 59.299 40.000 0.00 0.00 39.66 2.59
565 823 3.412386 ACAACAGATTGCCAACTACTCC 58.588 45.455 0.00 0.00 39.66 3.85
566 824 2.749621 CAACAGATTGCCAACTACTCCC 59.250 50.000 0.00 0.00 0.00 4.30
567 825 2.269940 ACAGATTGCCAACTACTCCCT 58.730 47.619 0.00 0.00 0.00 4.20
568 826 2.237392 ACAGATTGCCAACTACTCCCTC 59.763 50.000 0.00 0.00 0.00 4.30
569 827 1.840635 AGATTGCCAACTACTCCCTCC 59.159 52.381 0.00 0.00 0.00 4.30
570 828 0.541863 ATTGCCAACTACTCCCTCCG 59.458 55.000 0.00 0.00 0.00 4.63
571 829 0.834687 TTGCCAACTACTCCCTCCGT 60.835 55.000 0.00 0.00 0.00 4.69
572 830 1.255667 TGCCAACTACTCCCTCCGTC 61.256 60.000 0.00 0.00 0.00 4.79
573 831 1.957765 GCCAACTACTCCCTCCGTCC 61.958 65.000 0.00 0.00 0.00 4.79
574 832 1.328430 CCAACTACTCCCTCCGTCCC 61.328 65.000 0.00 0.00 0.00 4.46
575 833 0.613853 CAACTACTCCCTCCGTCCCA 60.614 60.000 0.00 0.00 0.00 4.37
576 834 0.338814 AACTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
577 835 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
578 836 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
579 837 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
580 838 3.400322 ACTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
581 839 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
582 840 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
583 841 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
584 842 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
585 843 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
586 844 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
587 845 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
588 846 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
589 847 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
590 848 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
591 849 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
592 850 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
593 851 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
594 852 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
595 853 7.042321 CGTCCCATAATATAAGAGCGTTTTTGA 60.042 37.037 0.00 0.00 0.00 2.69
596 854 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
597 855 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
598 856 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
599 857 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
602 860 8.773404 AATATAAGAGCGTTTTTGACACTAGT 57.227 30.769 0.00 0.00 0.00 2.57
603 861 4.795970 AAGAGCGTTTTTGACACTAGTG 57.204 40.909 21.44 21.44 0.00 2.74
605 863 4.940463 AGAGCGTTTTTGACACTAGTGTA 58.060 39.130 27.98 11.50 45.05 2.90
606 864 4.982916 AGAGCGTTTTTGACACTAGTGTAG 59.017 41.667 27.98 13.76 45.05 2.74
607 865 4.690122 AGCGTTTTTGACACTAGTGTAGT 58.310 39.130 27.98 6.32 45.05 2.73
608 866 5.835257 AGCGTTTTTGACACTAGTGTAGTA 58.165 37.500 27.98 14.71 45.05 1.82
609 867 5.689068 AGCGTTTTTGACACTAGTGTAGTAC 59.311 40.000 27.98 15.97 45.05 2.73
610 868 5.107722 GCGTTTTTGACACTAGTGTAGTACC 60.108 44.000 27.98 15.61 45.05 3.34
611 869 5.978919 CGTTTTTGACACTAGTGTAGTACCA 59.021 40.000 27.98 17.99 45.05 3.25
612 870 6.476380 CGTTTTTGACACTAGTGTAGTACCAA 59.524 38.462 27.98 22.31 45.05 3.67
613 871 7.010367 CGTTTTTGACACTAGTGTAGTACCAAA 59.990 37.037 27.98 25.99 45.05 3.28
614 872 8.667463 GTTTTTGACACTAGTGTAGTACCAAAA 58.333 33.333 29.84 29.84 45.05 2.44
615 873 8.789825 TTTTGACACTAGTGTAGTACCAAAAA 57.210 30.769 30.63 22.54 45.05 1.94
616 874 7.775397 TTGACACTAGTGTAGTACCAAAAAC 57.225 36.000 27.98 11.61 45.05 2.43
617 875 6.876155 TGACACTAGTGTAGTACCAAAAACA 58.124 36.000 27.98 14.00 45.05 2.83
618 876 6.757947 TGACACTAGTGTAGTACCAAAAACAC 59.242 38.462 27.98 11.00 45.05 3.32
627 885 9.439500 GTGTAGTACCAAAAACACTATTATGGA 57.561 33.333 0.00 0.00 39.27 3.41
630 888 8.036273 AGTACCAAAAACACTATTATGGAACG 57.964 34.615 0.00 0.00 0.00 3.95
631 889 6.262193 ACCAAAAACACTATTATGGAACGG 57.738 37.500 0.00 0.00 0.00 4.44
632 890 6.005198 ACCAAAAACACTATTATGGAACGGA 58.995 36.000 0.00 0.00 0.00 4.69
633 891 6.150474 ACCAAAAACACTATTATGGAACGGAG 59.850 38.462 0.00 0.00 0.00 4.63
634 892 6.404293 CCAAAAACACTATTATGGAACGGAGG 60.404 42.308 0.00 0.00 0.00 4.30
635 893 4.417426 AACACTATTATGGAACGGAGGG 57.583 45.455 0.00 0.00 0.00 4.30
755 1026 6.594788 AATTTTTCTAGATTTGCAGCCTCA 57.405 33.333 0.00 0.00 0.00 3.86
791 1062 0.679960 AACAAATGGCGACCTAGGGC 60.680 55.000 14.81 9.80 0.00 5.19
869 1154 4.074970 AGAGATTGTTACTTTGGCCACAG 58.925 43.478 17.55 17.55 0.00 3.66
1112 1422 2.844362 CCCTATGGCGCCTCAGGA 60.844 66.667 34.95 16.20 0.00 3.86
1233 1558 0.391130 ACAACATGGTCCGGTCATCG 60.391 55.000 0.00 5.17 38.88 3.84
1464 1797 1.358152 TCATCTTTCCCCGTGGTCTT 58.642 50.000 0.00 0.00 0.00 3.01
1500 1833 0.824759 ACTATGGTCTCCGTCTTGCC 59.175 55.000 0.00 0.00 0.00 4.52
1583 1916 0.864455 GCGCCAGATTCAGATGTAGC 59.136 55.000 0.00 0.00 0.00 3.58
2113 2490 2.229792 GTTCAGCATCACCAAGGTTGA 58.770 47.619 0.00 0.00 0.00 3.18
2222 2602 4.164258 GCTCCTTGCAGTTGTGGT 57.836 55.556 0.00 0.00 42.31 4.16
2241 2621 2.425829 GGTGGTCCCTTTCTTTTCCCTT 60.426 50.000 0.00 0.00 0.00 3.95
2416 3713 3.330267 GAGGTGAACAGGTTGAGCTTAG 58.670 50.000 4.91 0.00 34.84 2.18
2476 3773 1.699656 CGACTGCGCCCTGAATTCAG 61.700 60.000 25.75 25.75 43.40 3.02
2654 3952 2.560542 GTCTTTCTGTGAGCAGGAGAGA 59.439 50.000 0.00 0.00 42.78 3.10
2655 3953 3.006323 GTCTTTCTGTGAGCAGGAGAGAA 59.994 47.826 0.00 0.00 42.78 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 8.693120 AGGAAAAACAAAACCCTGTTTAAAAA 57.307 26.923 2.39 0.00 46.32 1.94
15 16 9.961264 ATAGGAAAAACAAAACCCTGTTTAAAA 57.039 25.926 2.39 0.00 46.32 1.52
16 17 9.961264 AATAGGAAAAACAAAACCCTGTTTAAA 57.039 25.926 2.39 0.00 46.32 1.52
20 21 7.502696 GGTAATAGGAAAAACAAAACCCTGTT 58.497 34.615 0.00 0.00 41.31 3.16
21 22 6.239092 CGGTAATAGGAAAAACAAAACCCTGT 60.239 38.462 0.00 0.00 0.00 4.00
22 23 6.016108 TCGGTAATAGGAAAAACAAAACCCTG 60.016 38.462 0.00 0.00 0.00 4.45
23 24 6.069994 TCGGTAATAGGAAAAACAAAACCCT 58.930 36.000 0.00 0.00 0.00 4.34
24 25 6.330004 TCGGTAATAGGAAAAACAAAACCC 57.670 37.500 0.00 0.00 0.00 4.11
25 26 7.031372 GGATCGGTAATAGGAAAAACAAAACC 58.969 38.462 0.00 0.00 0.00 3.27
26 27 7.823665 AGGATCGGTAATAGGAAAAACAAAAC 58.176 34.615 0.00 0.00 0.00 2.43
27 28 7.886446 AGAGGATCGGTAATAGGAAAAACAAAA 59.114 33.333 0.00 0.00 42.67 2.44
28 29 7.335924 CAGAGGATCGGTAATAGGAAAAACAAA 59.664 37.037 0.00 0.00 42.67 2.83
29 30 6.821665 CAGAGGATCGGTAATAGGAAAAACAA 59.178 38.462 0.00 0.00 42.67 2.83
30 31 6.346096 CAGAGGATCGGTAATAGGAAAAACA 58.654 40.000 0.00 0.00 42.67 2.83
31 32 5.758784 CCAGAGGATCGGTAATAGGAAAAAC 59.241 44.000 0.00 0.00 42.67 2.43
32 33 5.686650 GCCAGAGGATCGGTAATAGGAAAAA 60.687 44.000 0.00 0.00 42.67 1.94
33 34 4.202326 GCCAGAGGATCGGTAATAGGAAAA 60.202 45.833 0.00 0.00 42.67 2.29
34 35 3.323979 GCCAGAGGATCGGTAATAGGAAA 59.676 47.826 0.00 0.00 42.67 3.13
35 36 2.897969 GCCAGAGGATCGGTAATAGGAA 59.102 50.000 0.00 0.00 42.67 3.36
36 37 2.110188 AGCCAGAGGATCGGTAATAGGA 59.890 50.000 0.00 0.00 42.67 2.94
37 38 2.494073 GAGCCAGAGGATCGGTAATAGG 59.506 54.545 0.00 0.00 42.67 2.57
38 39 3.057174 GTGAGCCAGAGGATCGGTAATAG 60.057 52.174 0.00 0.00 41.58 1.73
39 40 2.891580 GTGAGCCAGAGGATCGGTAATA 59.108 50.000 0.00 0.00 41.58 0.98
40 41 1.689273 GTGAGCCAGAGGATCGGTAAT 59.311 52.381 0.00 0.00 41.58 1.89
41 42 1.112113 GTGAGCCAGAGGATCGGTAA 58.888 55.000 0.00 0.00 41.58 2.85
42 43 0.259065 AGTGAGCCAGAGGATCGGTA 59.741 55.000 0.00 0.00 41.58 4.02
43 44 1.000993 AGTGAGCCAGAGGATCGGT 59.999 57.895 0.00 0.00 41.58 4.69
44 45 1.440893 CAGTGAGCCAGAGGATCGG 59.559 63.158 0.00 0.00 41.58 4.18
45 46 1.227205 GCAGTGAGCCAGAGGATCG 60.227 63.158 0.00 0.00 41.58 3.69
46 47 0.461693 GTGCAGTGAGCCAGAGGATC 60.462 60.000 0.00 0.00 44.83 3.36
47 48 0.908656 AGTGCAGTGAGCCAGAGGAT 60.909 55.000 0.00 0.00 44.83 3.24
48 49 1.534959 AGTGCAGTGAGCCAGAGGA 60.535 57.895 0.00 0.00 44.83 3.71
49 50 1.375652 CAGTGCAGTGAGCCAGAGG 60.376 63.158 16.94 0.00 44.83 3.69
50 51 1.375652 CCAGTGCAGTGAGCCAGAG 60.376 63.158 23.34 0.01 44.83 3.35
51 52 2.745698 CCAGTGCAGTGAGCCAGA 59.254 61.111 23.34 0.00 44.83 3.86
52 53 2.359602 CCCAGTGCAGTGAGCCAG 60.360 66.667 23.34 5.45 44.83 4.85
53 54 3.957586 CCCCAGTGCAGTGAGCCA 61.958 66.667 23.34 0.00 44.83 4.75
54 55 4.729918 CCCCCAGTGCAGTGAGCC 62.730 72.222 23.34 0.00 44.83 4.70
111 112 1.886542 CAGAAAGTAAGCCCAACACCC 59.113 52.381 0.00 0.00 0.00 4.61
143 144 2.124193 CATGGCGCATGAAGGGGA 60.124 61.111 10.83 0.00 43.81 4.81
150 151 3.067180 AGGTTCTAAATTCATGGCGCATG 59.933 43.478 10.83 11.55 42.60 4.06
151 152 3.290710 AGGTTCTAAATTCATGGCGCAT 58.709 40.909 10.83 0.00 0.00 4.73
152 153 2.682856 GAGGTTCTAAATTCATGGCGCA 59.317 45.455 10.83 0.00 0.00 6.09
153 154 2.033424 GGAGGTTCTAAATTCATGGCGC 59.967 50.000 0.00 0.00 0.00 6.53
154 155 3.278574 TGGAGGTTCTAAATTCATGGCG 58.721 45.455 0.00 0.00 0.00 5.69
155 156 5.127682 ACATTGGAGGTTCTAAATTCATGGC 59.872 40.000 0.00 0.00 0.00 4.40
156 157 6.458751 CGACATTGGAGGTTCTAAATTCATGG 60.459 42.308 0.00 0.00 0.00 3.66
157 158 6.316140 TCGACATTGGAGGTTCTAAATTCATG 59.684 38.462 0.00 0.00 0.00 3.07
158 159 6.414732 TCGACATTGGAGGTTCTAAATTCAT 58.585 36.000 0.00 0.00 0.00 2.57
159 160 5.800296 TCGACATTGGAGGTTCTAAATTCA 58.200 37.500 0.00 0.00 0.00 2.57
160 161 5.294552 CCTCGACATTGGAGGTTCTAAATTC 59.705 44.000 0.00 0.00 44.92 2.17
161 162 5.186198 CCTCGACATTGGAGGTTCTAAATT 58.814 41.667 0.00 0.00 44.92 1.82
162 163 4.770795 CCTCGACATTGGAGGTTCTAAAT 58.229 43.478 0.00 0.00 44.92 1.40
163 164 4.202245 CCTCGACATTGGAGGTTCTAAA 57.798 45.455 0.00 0.00 44.92 1.85
164 165 3.887621 CCTCGACATTGGAGGTTCTAA 57.112 47.619 0.00 0.00 44.92 2.10
171 172 0.247460 TGTGAGCCTCGACATTGGAG 59.753 55.000 0.00 0.00 0.00 3.86
172 173 0.684535 TTGTGAGCCTCGACATTGGA 59.315 50.000 0.00 0.00 0.00 3.53
173 174 1.197721 GTTTGTGAGCCTCGACATTGG 59.802 52.381 0.00 0.00 0.00 3.16
174 175 2.146342 AGTTTGTGAGCCTCGACATTG 58.854 47.619 0.00 0.00 0.00 2.82
175 176 2.549754 CAAGTTTGTGAGCCTCGACATT 59.450 45.455 0.00 0.00 0.00 2.71
176 177 2.146342 CAAGTTTGTGAGCCTCGACAT 58.854 47.619 0.00 0.00 0.00 3.06
177 178 1.581934 CAAGTTTGTGAGCCTCGACA 58.418 50.000 0.00 0.00 0.00 4.35
178 179 0.235926 GCAAGTTTGTGAGCCTCGAC 59.764 55.000 0.00 0.00 0.00 4.20
179 180 0.179059 TGCAAGTTTGTGAGCCTCGA 60.179 50.000 0.00 0.00 0.00 4.04
180 181 0.662619 TTGCAAGTTTGTGAGCCTCG 59.337 50.000 0.00 0.00 0.00 4.63
181 182 2.735823 CTTTGCAAGTTTGTGAGCCTC 58.264 47.619 0.00 0.00 0.00 4.70
182 183 1.202452 GCTTTGCAAGTTTGTGAGCCT 60.202 47.619 0.00 0.00 0.00 4.58
183 184 1.211743 GCTTTGCAAGTTTGTGAGCC 58.788 50.000 0.00 0.00 0.00 4.70
184 185 1.925229 TGCTTTGCAAGTTTGTGAGC 58.075 45.000 9.56 9.56 34.76 4.26
197 198 1.621107 CAGCGTTAAGGCATGCTTTG 58.379 50.000 23.96 9.42 36.86 2.77
198 199 0.527565 CCAGCGTTAAGGCATGCTTT 59.472 50.000 19.67 19.67 36.86 3.51
199 200 1.315257 CCCAGCGTTAAGGCATGCTT 61.315 55.000 21.21 7.19 36.86 3.91
200 201 1.750399 CCCAGCGTTAAGGCATGCT 60.750 57.895 21.21 0.24 39.79 3.79
201 202 0.746563 TACCCAGCGTTAAGGCATGC 60.747 55.000 21.21 9.90 34.64 4.06
202 203 1.014352 GTACCCAGCGTTAAGGCATG 58.986 55.000 21.21 15.17 34.64 4.06
203 204 0.909623 AGTACCCAGCGTTAAGGCAT 59.090 50.000 21.21 7.10 34.64 4.40
204 205 0.036765 CAGTACCCAGCGTTAAGGCA 60.037 55.000 21.21 0.00 34.64 4.75
205 206 0.743345 CCAGTACCCAGCGTTAAGGC 60.743 60.000 12.17 12.17 0.00 4.35
206 207 0.611714 ACCAGTACCCAGCGTTAAGG 59.388 55.000 0.00 0.00 0.00 2.69
207 208 1.734707 CGACCAGTACCCAGCGTTAAG 60.735 57.143 0.00 0.00 0.00 1.85
208 209 0.244450 CGACCAGTACCCAGCGTTAA 59.756 55.000 0.00 0.00 0.00 2.01
209 210 1.885157 CGACCAGTACCCAGCGTTA 59.115 57.895 0.00 0.00 0.00 3.18
210 211 2.654877 CGACCAGTACCCAGCGTT 59.345 61.111 0.00 0.00 0.00 4.84
211 212 4.065281 GCGACCAGTACCCAGCGT 62.065 66.667 0.00 0.00 0.00 5.07
212 213 4.814294 GGCGACCAGTACCCAGCG 62.814 72.222 0.00 0.00 0.00 5.18
213 214 3.031417 ATGGCGACCAGTACCCAGC 62.031 63.158 4.90 0.00 36.75 4.85
214 215 1.153369 CATGGCGACCAGTACCCAG 60.153 63.158 4.90 0.00 36.75 4.45
215 216 2.986290 CATGGCGACCAGTACCCA 59.014 61.111 4.90 0.00 36.75 4.51
216 217 2.513897 GCATGGCGACCAGTACCC 60.514 66.667 4.90 0.00 36.75 3.69
217 218 1.078426 AAGCATGGCGACCAGTACC 60.078 57.895 4.90 0.00 36.75 3.34
218 219 1.369091 CCAAGCATGGCGACCAGTAC 61.369 60.000 0.00 0.00 40.58 2.73
219 220 1.078497 CCAAGCATGGCGACCAGTA 60.078 57.895 0.00 0.00 40.58 2.74
220 221 2.360350 CCAAGCATGGCGACCAGT 60.360 61.111 0.00 0.00 40.58 4.00
228 229 3.975522 GGACTGACCAAACCAAGCATGG 61.976 54.545 6.39 6.39 44.84 3.66
229 230 1.270550 GGACTGACCAAACCAAGCATG 59.729 52.381 0.00 0.00 38.79 4.06
230 231 1.620822 GGACTGACCAAACCAAGCAT 58.379 50.000 0.00 0.00 38.79 3.79
231 232 0.817634 CGGACTGACCAAACCAAGCA 60.818 55.000 0.00 0.00 38.90 3.91
232 233 1.515521 CCGGACTGACCAAACCAAGC 61.516 60.000 0.00 0.00 38.90 4.01
233 234 0.107831 TCCGGACTGACCAAACCAAG 59.892 55.000 0.00 0.00 38.90 3.61
234 235 0.107831 CTCCGGACTGACCAAACCAA 59.892 55.000 0.00 0.00 38.90 3.67
235 236 0.761323 TCTCCGGACTGACCAAACCA 60.761 55.000 0.00 0.00 38.90 3.67
236 237 0.613777 ATCTCCGGACTGACCAAACC 59.386 55.000 0.00 0.00 38.90 3.27
237 238 1.550976 AGATCTCCGGACTGACCAAAC 59.449 52.381 0.00 0.00 38.90 2.93
238 239 1.938585 AGATCTCCGGACTGACCAAA 58.061 50.000 0.00 0.00 38.90 3.28
239 240 1.550524 CAAGATCTCCGGACTGACCAA 59.449 52.381 0.00 0.00 38.90 3.67
240 241 1.186200 CAAGATCTCCGGACTGACCA 58.814 55.000 0.00 0.00 38.90 4.02
241 242 1.187087 ACAAGATCTCCGGACTGACC 58.813 55.000 0.00 0.00 0.00 4.02
242 243 3.320673 AAACAAGATCTCCGGACTGAC 57.679 47.619 0.00 0.00 0.00 3.51
243 244 3.614150 CGAAAACAAGATCTCCGGACTGA 60.614 47.826 0.00 0.00 0.00 3.41
244 245 2.668457 CGAAAACAAGATCTCCGGACTG 59.332 50.000 0.00 0.00 0.00 3.51
245 246 2.299297 ACGAAAACAAGATCTCCGGACT 59.701 45.455 0.00 0.00 0.00 3.85
246 247 2.666994 GACGAAAACAAGATCTCCGGAC 59.333 50.000 0.00 0.00 0.00 4.79
247 248 2.353406 GGACGAAAACAAGATCTCCGGA 60.353 50.000 2.93 2.93 0.00 5.14
248 249 2.000447 GGACGAAAACAAGATCTCCGG 59.000 52.381 0.00 0.00 0.00 5.14
249 250 2.000447 GGGACGAAAACAAGATCTCCG 59.000 52.381 0.00 0.00 0.00 4.63
250 251 3.003480 CAGGGACGAAAACAAGATCTCC 58.997 50.000 0.00 0.00 0.00 3.71
251 252 3.665190 ACAGGGACGAAAACAAGATCTC 58.335 45.455 0.00 0.00 0.00 2.75
252 253 3.771577 ACAGGGACGAAAACAAGATCT 57.228 42.857 0.00 0.00 0.00 2.75
253 254 5.334646 GGTTTACAGGGACGAAAACAAGATC 60.335 44.000 0.00 0.00 34.30 2.75
254 255 4.517832 GGTTTACAGGGACGAAAACAAGAT 59.482 41.667 0.00 0.00 34.30 2.40
255 256 3.878699 GGTTTACAGGGACGAAAACAAGA 59.121 43.478 0.00 0.00 34.30 3.02
256 257 3.881089 AGGTTTACAGGGACGAAAACAAG 59.119 43.478 0.00 0.00 34.30 3.16
257 258 3.878699 GAGGTTTACAGGGACGAAAACAA 59.121 43.478 0.00 0.00 34.30 2.83
258 259 3.469739 GAGGTTTACAGGGACGAAAACA 58.530 45.455 0.00 0.00 34.30 2.83
259 260 2.477754 CGAGGTTTACAGGGACGAAAAC 59.522 50.000 0.00 0.00 0.00 2.43
260 261 2.102925 ACGAGGTTTACAGGGACGAAAA 59.897 45.455 0.00 0.00 0.00 2.29
261 262 1.688197 ACGAGGTTTACAGGGACGAAA 59.312 47.619 0.00 0.00 0.00 3.46
262 263 1.000060 CACGAGGTTTACAGGGACGAA 60.000 52.381 0.00 0.00 0.00 3.85
263 264 0.599558 CACGAGGTTTACAGGGACGA 59.400 55.000 0.00 0.00 0.00 4.20
264 265 0.599558 TCACGAGGTTTACAGGGACG 59.400 55.000 0.00 0.00 0.00 4.79
265 266 1.668047 CGTCACGAGGTTTACAGGGAC 60.668 57.143 0.00 0.00 0.00 4.46
266 267 0.599558 CGTCACGAGGTTTACAGGGA 59.400 55.000 0.00 0.00 0.00 4.20
267 268 0.389426 CCGTCACGAGGTTTACAGGG 60.389 60.000 0.00 0.00 0.00 4.45
268 269 0.599558 TCCGTCACGAGGTTTACAGG 59.400 55.000 0.00 0.00 0.00 4.00
269 270 2.094906 TCATCCGTCACGAGGTTTACAG 60.095 50.000 0.00 0.00 0.00 2.74
270 271 1.887854 TCATCCGTCACGAGGTTTACA 59.112 47.619 0.00 0.00 0.00 2.41
271 272 2.642139 TCATCCGTCACGAGGTTTAC 57.358 50.000 0.00 0.00 0.00 2.01
272 273 3.880047 ATTCATCCGTCACGAGGTTTA 57.120 42.857 0.00 0.00 0.00 2.01
273 274 2.762535 ATTCATCCGTCACGAGGTTT 57.237 45.000 0.00 0.00 0.00 3.27
274 275 3.880047 TTATTCATCCGTCACGAGGTT 57.120 42.857 0.00 0.00 0.00 3.50
275 276 3.880047 TTTATTCATCCGTCACGAGGT 57.120 42.857 0.00 0.00 0.00 3.85
276 277 4.494199 GCTTTTTATTCATCCGTCACGAGG 60.494 45.833 0.00 0.00 0.00 4.63
277 278 4.330074 AGCTTTTTATTCATCCGTCACGAG 59.670 41.667 0.00 0.00 0.00 4.18
278 279 4.250464 AGCTTTTTATTCATCCGTCACGA 58.750 39.130 0.00 0.00 0.00 4.35
279 280 4.600012 AGCTTTTTATTCATCCGTCACG 57.400 40.909 0.00 0.00 0.00 4.35
280 281 6.088085 CACAAAGCTTTTTATTCATCCGTCAC 59.912 38.462 9.53 0.00 0.00 3.67
281 282 6.148948 CACAAAGCTTTTTATTCATCCGTCA 58.851 36.000 9.53 0.00 0.00 4.35
282 283 5.572896 CCACAAAGCTTTTTATTCATCCGTC 59.427 40.000 9.53 0.00 0.00 4.79
283 284 5.469479 CCACAAAGCTTTTTATTCATCCGT 58.531 37.500 9.53 0.00 0.00 4.69
284 285 4.864247 CCCACAAAGCTTTTTATTCATCCG 59.136 41.667 9.53 0.00 0.00 4.18
285 286 5.793817 ACCCACAAAGCTTTTTATTCATCC 58.206 37.500 9.53 0.00 0.00 3.51
286 287 7.575365 CAAACCCACAAAGCTTTTTATTCATC 58.425 34.615 9.53 0.00 0.00 2.92
287 288 6.017192 GCAAACCCACAAAGCTTTTTATTCAT 60.017 34.615 9.53 0.00 0.00 2.57
288 289 5.295540 GCAAACCCACAAAGCTTTTTATTCA 59.704 36.000 9.53 0.00 0.00 2.57
289 290 5.277779 GGCAAACCCACAAAGCTTTTTATTC 60.278 40.000 9.53 0.00 0.00 1.75
290 291 4.578516 GGCAAACCCACAAAGCTTTTTATT 59.421 37.500 9.53 0.00 0.00 1.40
291 292 4.133820 GGCAAACCCACAAAGCTTTTTAT 58.866 39.130 9.53 0.00 0.00 1.40
292 293 3.198853 AGGCAAACCCACAAAGCTTTTTA 59.801 39.130 9.53 0.00 36.11 1.52
293 294 2.026356 AGGCAAACCCACAAAGCTTTTT 60.026 40.909 9.53 0.00 36.11 1.94
294 295 1.559219 AGGCAAACCCACAAAGCTTTT 59.441 42.857 9.53 0.00 36.11 2.27
295 296 1.203237 AGGCAAACCCACAAAGCTTT 58.797 45.000 5.69 5.69 36.11 3.51
296 297 2.080654 TAGGCAAACCCACAAAGCTT 57.919 45.000 0.00 0.00 36.11 3.74
297 298 2.080654 TTAGGCAAACCCACAAAGCT 57.919 45.000 0.00 0.00 36.11 3.74
298 299 2.900716 TTTAGGCAAACCCACAAAGC 57.099 45.000 0.00 0.00 36.11 3.51
322 323 0.314935 TCTCGTCGGCGGTAGTTTTT 59.685 50.000 10.62 0.00 38.89 1.94
323 324 0.109412 CTCTCGTCGGCGGTAGTTTT 60.109 55.000 10.62 0.00 38.89 2.43
324 325 1.505353 CTCTCGTCGGCGGTAGTTT 59.495 57.895 10.62 0.00 38.89 2.66
325 326 2.404995 CCTCTCGTCGGCGGTAGTT 61.405 63.158 10.62 0.00 38.89 2.24
326 327 2.823147 CCTCTCGTCGGCGGTAGT 60.823 66.667 10.62 0.00 38.89 2.73
327 328 2.821688 GACCTCTCGTCGGCGGTAG 61.822 68.421 10.62 7.31 38.89 3.18
328 329 2.821366 GACCTCTCGTCGGCGGTA 60.821 66.667 10.62 0.00 38.89 4.02
382 383 1.284715 GCAAACGGAAGGTTTCGGG 59.715 57.895 0.00 0.00 45.60 5.14
398 399 1.031571 GGGAAGATCAATGGCGTGCA 61.032 55.000 0.00 0.00 0.00 4.57
407 408 3.118738 GCTTCGGAAGTAGGGAAGATCAA 60.119 47.826 18.32 0.00 39.56 2.57
410 411 2.432510 CTGCTTCGGAAGTAGGGAAGAT 59.567 50.000 23.23 0.00 39.56 2.40
438 673 4.450976 TCAAGCAAAGACTAGCTGAACAA 58.549 39.130 0.00 0.00 41.70 2.83
447 702 6.939622 TCATGAAGAGATCAAGCAAAGACTA 58.060 36.000 0.00 0.00 42.54 2.59
450 705 5.802173 TGCTCATGAAGAGATCAAGCAAAGA 60.802 40.000 0.00 0.00 44.78 2.52
523 781 4.831155 TGTTAGTAATGGTATCCGAGGAGG 59.169 45.833 0.00 0.00 42.97 4.30
546 804 2.644798 AGGGAGTAGTTGGCAATCTGTT 59.355 45.455 1.92 0.00 0.00 3.16
561 819 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
562 820 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
563 821 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
564 822 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
565 823 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
566 824 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
567 825 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
568 826 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
569 827 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
570 828 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
571 829 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
572 830 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
573 831 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
576 834 9.865321 ACTAGTGTCAAAAACGCTCTTATATTA 57.135 29.630 0.00 0.00 45.69 0.98
577 835 8.656849 CACTAGTGTCAAAAACGCTCTTATATT 58.343 33.333 15.06 0.00 45.69 1.28
578 836 7.817962 ACACTAGTGTCAAAAACGCTCTTATAT 59.182 33.333 22.95 0.00 45.69 0.86
579 837 7.149973 ACACTAGTGTCAAAAACGCTCTTATA 58.850 34.615 22.95 0.00 45.69 0.98
580 838 5.989777 ACACTAGTGTCAAAAACGCTCTTAT 59.010 36.000 22.95 0.00 45.69 1.73
581 839 5.353938 ACACTAGTGTCAAAAACGCTCTTA 58.646 37.500 22.95 0.00 45.69 2.10
582 840 4.189231 ACACTAGTGTCAAAAACGCTCTT 58.811 39.130 22.95 0.00 45.69 2.85
583 841 3.793559 ACACTAGTGTCAAAAACGCTCT 58.206 40.909 22.95 0.00 45.69 4.09
584 842 4.743644 ACTACACTAGTGTCAAAAACGCTC 59.256 41.667 31.11 0.00 45.69 5.03
586 844 5.107722 GGTACTACACTAGTGTCAAAAACGC 60.108 44.000 31.11 13.86 43.74 4.84
587 845 5.978919 TGGTACTACACTAGTGTCAAAAACG 59.021 40.000 31.11 13.90 43.74 3.60
588 846 7.775397 TTGGTACTACACTAGTGTCAAAAAC 57.225 36.000 31.11 20.71 43.74 2.43
589 847 8.789825 TTTTGGTACTACACTAGTGTCAAAAA 57.210 30.769 30.63 24.54 42.18 1.94
590 848 8.667463 GTTTTTGGTACTACACTAGTGTCAAAA 58.333 33.333 29.84 29.84 43.74 2.44
591 849 7.823310 TGTTTTTGGTACTACACTAGTGTCAAA 59.177 33.333 31.11 27.21 43.74 2.69
592 850 7.278424 GTGTTTTTGGTACTACACTAGTGTCAA 59.722 37.037 31.11 23.63 43.74 3.18
593 851 6.757947 GTGTTTTTGGTACTACACTAGTGTCA 59.242 38.462 31.11 19.43 43.74 3.58
594 852 6.982724 AGTGTTTTTGGTACTACACTAGTGTC 59.017 38.462 31.11 16.83 46.72 3.67
595 853 6.881570 AGTGTTTTTGGTACTACACTAGTGT 58.118 36.000 30.13 30.13 46.72 3.55
601 859 9.439500 TCCATAATAGTGTTTTTGGTACTACAC 57.561 33.333 0.00 0.00 40.81 2.90
604 862 9.153721 CGTTCCATAATAGTGTTTTTGGTACTA 57.846 33.333 0.00 0.00 30.93 1.82
605 863 7.120138 CCGTTCCATAATAGTGTTTTTGGTACT 59.880 37.037 0.00 0.00 30.93 2.73
606 864 7.119553 TCCGTTCCATAATAGTGTTTTTGGTAC 59.880 37.037 0.00 0.00 31.79 3.34
607 865 7.166851 TCCGTTCCATAATAGTGTTTTTGGTA 58.833 34.615 0.00 0.00 31.79 3.25
608 866 6.005198 TCCGTTCCATAATAGTGTTTTTGGT 58.995 36.000 0.00 0.00 31.79 3.67
609 867 6.404293 CCTCCGTTCCATAATAGTGTTTTTGG 60.404 42.308 0.00 0.00 0.00 3.28
610 868 6.404293 CCCTCCGTTCCATAATAGTGTTTTTG 60.404 42.308 0.00 0.00 0.00 2.44
611 869 5.650703 CCCTCCGTTCCATAATAGTGTTTTT 59.349 40.000 0.00 0.00 0.00 1.94
612 870 5.045432 TCCCTCCGTTCCATAATAGTGTTTT 60.045 40.000 0.00 0.00 0.00 2.43
613 871 4.472108 TCCCTCCGTTCCATAATAGTGTTT 59.528 41.667 0.00 0.00 0.00 2.83
614 872 4.035112 TCCCTCCGTTCCATAATAGTGTT 58.965 43.478 0.00 0.00 0.00 3.32
615 873 3.641906 CTCCCTCCGTTCCATAATAGTGT 59.358 47.826 0.00 0.00 0.00 3.55
616 874 3.641906 ACTCCCTCCGTTCCATAATAGTG 59.358 47.826 0.00 0.00 0.00 2.74
617 875 3.924922 ACTCCCTCCGTTCCATAATAGT 58.075 45.455 0.00 0.00 0.00 2.12
618 876 5.715279 TGATACTCCCTCCGTTCCATAATAG 59.285 44.000 0.00 0.00 0.00 1.73
619 877 5.479375 GTGATACTCCCTCCGTTCCATAATA 59.521 44.000 0.00 0.00 0.00 0.98
620 878 4.283722 GTGATACTCCCTCCGTTCCATAAT 59.716 45.833 0.00 0.00 0.00 1.28
621 879 3.640029 GTGATACTCCCTCCGTTCCATAA 59.360 47.826 0.00 0.00 0.00 1.90
622 880 3.117246 AGTGATACTCCCTCCGTTCCATA 60.117 47.826 0.00 0.00 0.00 2.74
623 881 2.040178 GTGATACTCCCTCCGTTCCAT 58.960 52.381 0.00 0.00 0.00 3.41
624 882 1.006758 AGTGATACTCCCTCCGTTCCA 59.993 52.381 0.00 0.00 0.00 3.53
625 883 1.777941 AGTGATACTCCCTCCGTTCC 58.222 55.000 0.00 0.00 0.00 3.62
626 884 3.889520 AAAGTGATACTCCCTCCGTTC 57.110 47.619 0.00 0.00 0.00 3.95
627 885 3.450096 GGTAAAGTGATACTCCCTCCGTT 59.550 47.826 0.00 0.00 0.00 4.44
628 886 3.029570 GGTAAAGTGATACTCCCTCCGT 58.970 50.000 0.00 0.00 0.00 4.69
629 887 3.028850 TGGTAAAGTGATACTCCCTCCG 58.971 50.000 0.00 0.00 0.00 4.63
630 888 3.181478 CGTGGTAAAGTGATACTCCCTCC 60.181 52.174 0.00 0.00 0.00 4.30
631 889 3.181478 CCGTGGTAAAGTGATACTCCCTC 60.181 52.174 0.00 0.00 0.00 4.30
632 890 2.764572 CCGTGGTAAAGTGATACTCCCT 59.235 50.000 0.00 0.00 0.00 4.20
633 891 2.159000 CCCGTGGTAAAGTGATACTCCC 60.159 54.545 0.00 0.00 0.00 4.30
634 892 2.762327 TCCCGTGGTAAAGTGATACTCC 59.238 50.000 0.00 0.00 0.00 3.85
635 893 4.179298 GTTCCCGTGGTAAAGTGATACTC 58.821 47.826 0.00 0.00 0.00 2.59
660 918 6.777091 TGCCTATTGTATATGGTGCTCAATTT 59.223 34.615 0.00 0.00 32.27 1.82
755 1026 2.551270 TGTTTCATCTCCAGGCTACCT 58.449 47.619 0.00 0.00 0.00 3.08
869 1154 3.994392 TCACTACAGAATTTGCTTCGGAC 59.006 43.478 0.00 0.00 38.98 4.79
1112 1422 4.083110 CGTTCATGAACAGCTTCCTTTCAT 60.083 41.667 32.06 4.51 39.95 2.57
1583 1916 3.933048 CTTGCCACCAGCCCCTCAG 62.933 68.421 0.00 0.00 42.71 3.35
1599 1933 7.049133 CCATCTCTCTGAACTTCATCATTCTT 58.951 38.462 0.00 0.00 0.00 2.52
2033 2410 5.874810 TCATGTCACAGCTTACATAAGGTTC 59.125 40.000 5.93 0.00 41.62 3.62
2113 2490 4.520874 CGATACATACAGTCCAGAGGATGT 59.479 45.833 0.00 0.00 32.73 3.06
2219 2597 1.133294 GGGAAAAGAAAGGGACCACCA 60.133 52.381 0.00 0.00 43.89 4.17
2222 2602 2.158370 GGAAGGGAAAAGAAAGGGACCA 60.158 50.000 0.00 0.00 0.00 4.02
2241 2621 7.823745 ATAAGCTTCACTTTCAAAAGAAGGA 57.176 32.000 0.00 1.84 39.97 3.36
2392 3689 0.951040 CTCAACCTGTTCACCTCGCC 60.951 60.000 0.00 0.00 0.00 5.54
2416 3713 4.054671 CTGGATTATTCTTCAGACCTCGC 58.945 47.826 0.00 0.00 0.00 5.03
2476 3773 1.470098 CTGCTTACAATGCCACTGGTC 59.530 52.381 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.