>input_sequence_72254
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-----------------------ATGAAGCTCTTCACTGTCATGTTTTCCTACCTCCTCCTT------CTTGGCCTCTAT
ACACCACCAAGCCTGTCAGACAGTCCACCTCTTCAAGATATGTGCCCTATGGCGCCTCAGGATGAAAGGAAGCTGTTCAT
GAACGGCTACCTCTGCAAGCACCCGAGCACCATTCTGGCTTCCGATTTCAAGACATTGCTTCTCAACCATGCCGGGAAAC
TAGACAACATGGT---------------CCGGTCATCGGCGAACATCGTCACCGCTGCCGAGTTCCCTGGCCTCAACACC
CTTGGCATGTCGATGGCACGCACCGACATCGACTCCTACGGGATAGTGCTTCCCCAC--------TCTCACCCAAGGGCG
TCGGAGATGATGTTTGTCCATGATGGCAGCGTGCTGGCCGGTTTCTTTGACACCACCGGTAAGCTGTTTCAGAAGAGATT
ATGTGAGGGGGATGTTTTCATCTTTCCCCGTGGTCTTGTTCACTTCATCATGAACTATGGTCTCCGTCTTGCCACGACGT
TCTCGGTGCTCAACAGTCAGAACCCTGGTGTGGTTGGAATCACCCACGCGATGTTTGCGCCAGATTCAGATGTAGCTGAG
G-GGCTGGTGGCAAGAATGATGAAGTTCAGAGAGATGGAAATCTCTGACAACAAGACTACTGATTTTCCATGGACTTCCT
GA------------------------------------------------------------------------------
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>chr3D_1_TraesCS3D01G062300
GATATTTGCTGGGTTTTTTAAACAGGGTTTTGTTTTTCCTATTACCGATCCTCTGGCTCACTGCACTGGGGGGCCCACTA
CAAGCCCGTGACGAGTGGTTTGGTAGGTTGTGGGTGTTGGGCTTACTTTCTGATTGCGAGTGGTCCCCTTCATGCGCCAT
GAATTTAGAACCTCCAATGTCGAGGCTCACAAACTTGCAAAGCATGCCTTAACGCTGGGTACTGGTCGCCATGCTTGGTT
TGGTCAGTCCGGAGATCTTGTTTTCGTCCCTGTAAACCTCGTGACGGATGAATAAAAAGCTTTGTGGGTTTGCCTAAAAA
AAAAAAACTACCGCCGACGAGAGGTCCGGCGCATCCTGTGGCGGCGGCGATGTCGACCCTCTCCCGAAACCTTCCGTTTG
CACGCCATTGATCTTCCCTACTTCCGAAGC--------------------------------------------------
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------------------------AGCAGAGCT--------------------TGTTCAGCTAGTCTTTGCTTGATCTCT
TCATGAGCATCAGTTTCTGAAGCAC-ACCATTTTTTACCAGTGAGTGGGC--GATGAGCGCCTCCTCGGATACCATTACT
AACAACAGATTGCCAACTACTCCCTCCGTCCCATAATATAAGAGCGTTTTTGACACTAGTGTAGTACCAAAAACACTATT
ATGGAACGGAGGGAGTATCACTTTACCACGGGAACGCAAATTGAGCACCATATACAATAG--GCATTACTGCAGCC--TG
---------CCAAGTCTGAAGCATTTTCAGAATCAGCGTAATAATTTTTCTAGATTTGCAGCCTCAGGTAGCCTGGAGAT
GAAACAAATGGCGACCTAGGGCCATCATTAGAATCT-AAAAGCTTCATATTAACACCTTCACCCTTTTGCCACAATTCAG
AGATTG-------------TTACTTTGGCCACAGTCCGAAGCAAATTCTGTAGTGAACTCCAAGAAATCTGATACAGGTT
GCACAGACTTGGCTTTGGTTTCACTCCTTTCTCATCACTTTATTTAA------------------ACCCATGATTTTCTA
CT-CCCATCTCCGCGTCCAGGAGATGAAGCTCTTCACTGTCATGTTTTCCTACCTCCTCCTT------CTTGGCCTCTAT
ACACCACCAAGCCTGTCAGACAGTCCACCTCTTCAAGATATGTGCCCTATGGCGCCTCAGGATGAAAGGAAGCTGTTCAT
GAACGGCTACCTCTGCAAGCACCCGAGCACCATTCTGGCTTCCGATTTCAAGACATTGCTTCTCAACCATGCCGGGAAAC
TAGACAACATGGT---------------CCGGTCATCGGCGAACATCGTCACCGCTGCCGAGTTCCCTGGCCTCAACACC
CTTGGCATGTCGATGGCACGCACCGACATCGACTCCTACGGGATAGTGCTTCCCCAC--------TCTCACCCAAGGGCG
TCGGAGATGATGTTTGTCCATGATGGCAGCGTGCTGGCCGGTTTCTTTGACACCACCGGTAAGCTGTTTCAGAAGAGATT
ATGTGAGGGGGATGTTTTCATCTTTCCCCGTGGTCTTGTTCACTTCATCATGAACTATGGTCTCCGTCTTGCCACGACGT
TCTCGGTGCTCAACAGTCAGAACCCTGGTGTGGTTGGAATCACCCACGCGATGTTTGCGCCAGATTCAGATGTAGCTGAG
G-GGCTGGTGGCAAGAATGATGAAGTTCAGAGAGATGGAAATCTCTGACAACAAGACTACTGATTTTCCATGGACTTCCT
GATTAGTTATGTAACTAATCAAGATAGTGGATCTAATTATTATGAAATTTACCCGCAGATGATGATTTCCACGTTTCAAT
CTTGTCATGTATTTGGACAGAATCTCAGTCTAGTAATGT-TCTATACTCAATGATGTAAATACCATGTGATGTAGCTGAT
TAATATCTGT--------AGGAAACTAGGAATTATATAAAGATCAGAATCGCG---------------------------
ACGCATAGATTGGGACCATAGCCTTCTATCTGTTTACCTTACAGGTTGGTTGTTTAGCCTGAACCCT-GTCGTGATAATA
ATA------ATGATCCTGGACGCTATGCATTATCTCTCCATGGTGTTGTTTCTATCTCATTAGTGTCGCACATGCACAAC
CAAGTTTTGGAACCTTATGTAAGCTGTGACATGAGATTTTTGTCAAGCGACAGCAAGCCAGTCTCTTTGGTTCAGCATCA
CCAAGGTTGACATCCTCTGGACTGTATGTATCGTAGCCTTGCTTTTCCTTTTGCTTTACTCAGTGGAATTCTATACCGTT
CTTTTAGTATTGTTATC-TTTTGCTCCTTGCAGTTGT--GGTGGTCCCTTTCTTTTCCCTTCCTTCTTTTGAAAGTGAAG
CTTATTTTTT-ATTCTCTCTTCACTGAAAGTTTG----------------------------------------------
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--------------------------------------------------------------------ATTC--ATAGGT
ATATACCTATGATGCCACTTACAGATTTGTGCAAGGATTATCCTACCAATCAACTAGCTACTCGTGCATAGGATTCTGAG
CACTCGGCGGCGAGGTGAACAGGTTGAGCTTAGCGAGGTCTGAAGAATAATCCAGAGGGAACGAATGGCTACTCGACTGC
GCCCTGAATTCAGACCAGTGGCATTGTAAGCAGCACAACTTCTATCTGACTAGATTTGCAAAAATG-TTGTGAAATCTGA
TGTCATATACCCTGATAATAGGGAGCATTACATGGTCACAGCAGTAGCAGAGATAGTTCAGTCAGACTTGACACCCTCTA
GGCATGGTTGGTCTTTCTGTGAGCAGGAGAGAAATTCATGTCTGGC
>chr3B_61
CTGCACT-------------------------------------------------------------GGGGGCCCACTA
CAAGCCCGTGACGAGTGGTTTGGTAGGTTGT-GGTGTTGGGCTTACTTTCAGATTGCGAGTGGCCTCCCCACC-------
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---------ACCGCCGACGCGAGCTCCGGCGCATCCTGCGGCGGCGGCGATGTCGACCCTCTTCCGAAACCTTCCGTTCG
CACGCCACTGCTGTTCCCTACCTGCGCATTTGCCCCCGCAGCGGCTGCCGCTCCCGTCTCCAGCGAGTCCCCGCGGGGTG
GTACCTCACTGCT-----------------CCTCCGCGTCCAGATTCCAGAAGGTGAATCTTCTTCTCCTCCTTCCGGTG
ATGGCGGCCAGTAGATGCGTAAATTGTAGCAAATGAACCCTTCTGCACCATGACTGTTGCCGATTCTCCAGCTTCTATGA
AATCTGATGATATGCCTTCGTTATAGCATTGCACGTTCAGAAGCAGCAGAGCTTGTTCAGCCAGACTTTGCTTGATCTCT
TCGTGAGCATCAGTTTCTGAAAAAAAACCATTTTTTACCAGTGAGTGGGC--GATGAGCGTCTCCTCAAATACAATTACT
AACTACAGATTGCCAACT--------------------------------------------------------------
-------------AGTATCACTTTACCACGGGAACGCTAATTGAGCACCATATACAATAG--GCATTACTGCAGCC--TG
---------CCAAGTCTGAAGCATTTTCAGAATCAGCATAATAATTTTTCTAGATTTGC----------AGCCTGGAGAT
GAAACAAATGGCGACCTAGGGGCATCGTTAGAATCT-AAAAGCTTCATGTTAACACCTTCACCCTTTTGCCACAATTCAG
AGATTG-------------TTACTTTGGCCACAATCCGAAGCAAATTCTGTAGTGAACTCCAAGAAATCTGATACAGGTT
GCACACACTTGGCTTTGGTTACACTCCTTTCTCGTCACATTATTTAA------------------ACCCACAATTCTCTA
CT-CC-ATCTCTGTGTCTAAGAGATGAAGCTCTTCACTGTCATGTTTTTCTACGTCCTCCTC------CTTGGCATCTAT
ACACCACCAAGTCTATCAGACGGTCCACCACTTCAAGATGTGTGCCCTATGGCGCCTCAGGGTGAAAGGAAGCTGTTCAT
GAACGGTTTCCTCTGCAAGCACCCTAGCACCATTCTGGCTTCCGATTTCAAGACATTGCTTCTCAACCATGCCGGGAAAC
TAGACAACATGGT---------------CCGGTCATCAACGAACATCATCACCGCTGCCGAGTTCCCTGGCCTCAACACC
CTTGGCATGTCCATGGCACGGACCGACATCGACCCGTATGGGCTAGTGCTTCCCCAC--------TCTCACCCAAGGGCG
TCTGAGATGATGTTTGTCCATGATGGCAGTGTGCTGGCCGGTTTCTTTGACACAACCGGTAAGCTGTTTCAGAAGAGACT
ATGTAAGGGGGATGTGTTCATCTTTCCCCGTGGTTTGGTTCATTTCATCATGAACTATGGTTTCCGTCTTGCAACGACGT
TCTCGGTGCTTAACAGTCAGAACCCTGGTGTGGTTGGCATCACCCATGCAATGTTTGCGCCAGATTCAGATGTAGTTGAG
G-GGCTGGTGGCCAGAATGATGAAGTTCAGAGAGATGGAAATCTCTGACAACAAGACTACTGATTTTCCATGGACTTCCT
GATTAGTTATGTAACTAATCAAGATAGTGGATCTAATTATTATGAAATTTACCCGCAGATGATGATTTGCACATTTCAAT
CTTGTTATGTATTTGGACAGAATCTCAGTCTAGTAATGT-TATGTACTCAATGATGTAAATACCATGTGATGTAGCTGAT
TAATTTCTGTAGGAAACTAGGAAT----------TATAAAGATAAGAACCGCG---------------------------
GCACATAGATTGGGAC-----CCTTCTATCTGTTTACCTTACAGGTTGGTTGTTTAGCCTGAACCCT-GTTGTGATAATA
ATA------ATGATCCTGGACGCTATGCATTATCTCTCCATGGTGTTGTTTCTATCTCATTAGTGTCGCACATGCACAAC
CAAGTTTTGCAACCTTATGTAAGCTGTGACATGAGATTTTTGTCAAGCGACAGCAAGCCAGTCTCTTTGGTTCAGCATCA
CCAAGGTTGGCATCCTCTGGACTGTATGTATCGTAGCCTTGCTTTTCCTTTTGCTTTACTCAGTGGAACTCTATACTGTT
TTTTTAGTATTGTTATC-TTTTGCTCTTTGCTGTTGA--GGAGGTCCCTTTCTTTTCCCTGCCTTCTTTTGAAAGTGAAG
CTTATTTTTTTATTCTCTCTTCATGGAAAGTTTG----------------------------------------------
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--------------------------------------------------------------------ATTCATATAGGT
ATATACCTATGATGCCACTTACGCATTTGTGCAAGGATTATCCTACCAATCAACTAGCTACTCGTGCATAGGATTCTGAG
CACTCGGCAGCGAGGTGAACAGGTTGAGCTTACCGAGGTCTGAAGAATAATCCAGAGGGAACGAATGGCTACTCGACTGC
GCCCTGAATTCACACCAGTGGCATTGTAAGCAGCACAACTTCTATCTGACTAGATTTGCAAAAATG-TTGTCAAATCTGA
TGTCATATACCCTGATAATAGGGAGCATTACATGGTCACAGCAGTAGCAAAGATAGTTCAGTCAGACTTGACGCCCTCTA
GTCAGGGT--------------------------------------
>chr3A_61
CTGCACT-------------------------------------------------------------GGGGGCCCACTA
CAAGCCCGTGACGAGTGGTTTGGTAGGCTGT-GGTGTTGGGCTTACTTTCCGATTGCGAGTGGCCTCCCCACC-------
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---------ACCACCGCCGGGAGCTCCGGTGCATCCTGCGGCGGCGGCGATGTCGACCTTC-TCCGAAACCTTCCGTTCG
CACGCCACCGCTCTCCCCTACTTGCGCATTTGCCACCGCAGTGGCTGCTGCCCCGA----------------------TG
GTACCTCACTGCCGCCTTCGACCTTGGGCACCTCCGCATCCAGATTCCAGAAGGTGAATTTATTTCTCCTCCTTCCGGTG
ATGGCGGCTAGTCGATGCGTAAATTGTAGCAAGCGAACTCTTCTGCACCGTGATTGTTGCCGACTCGCCAGCTGCTATGA
AATCTGATGATATGCCTTCGTTATAGCATTGCA--------------------TGTTCAGCCAGACTTTGGTTGATCTCT
TCATGAGCATCAGTTTCTGAAACAC-ACCATTTTTTACCAGTATAAGTGAGTGATGAGCGTCTCCTCGGATACCAGTACT
AACTACAGATTGCCAAC---------------------------------------------------------------
---------------TATCTCTTTACCACGGGAACACTAATTGAGCACCATATACAATAG--GCATCACTGCAGCATATG
---------CCAAGTCTGAAGCATTTTCAGAATCAGCGTAATGTTTTTTCTAGATTTGCAGCCTC-GGTAGCCTGGAGAT
GAAACAAATGGCGACCTAGGGGCATCGTTAGAATCAAAAAAGCTTCATAGTAACACCTTCACCCTTTTGCCACAATTCAG
AGATTG-------------TTACCTTGGCCCCAATCCGAAGCAAATTCTGTAGTGAACTCCAAGAAATCTGATACAGGTT
GCACAGACTTGGCTTTGGTTTCACTCCTTTTCCATCACATTATTTAA------------------ACCCATGATTCTCTA
CT-CCC-TCTCTGTGTCCAAGAGATGAAGCTCTTCACCGTCATGTTTTCCTACCTCCTCCTC------CTTGGCCTCTAT
ACACCACCAAGCCTGTCAGACAGTCCACCTCTTCAAGATATGTGCCCTATGGCGCCTCAGGGTGAAAGGAAGCTGTTCAT
GAACGGCTACCTCTGCAAGCACCCTAGCACCATACTGGCTTCTGATTTCAAGACTTTGCTTCTCAACCATGCCGGGAAAC
TAGACAACGTGGT---------------C---------------ATCGTCACCGCTGCCGAGTTCCCTGGCCTCAACACC
CTTGGCATGTCCATGGCACGGACCGACATCGACCCGTATGGGCTAGTGCTTCCCCAC--------TCTCACCCAAGGGCG
TCTGAGATGATGTTTGTCCATGATGGCAGGGTGCTGGCTGGTTTCTTTGACACAACCGGTAAGCTGTTTCAGAAGAGACT
ATGTAAGGGGGATGTGTTCATCTTTCCCCGTGGTTTGGTTCATTTCATCATGAACTATGGTTTCCGTCTTGCAACGACGT
TCTCGGTGCTTAAAAGTCAGAACCCTGGTGTAGTTGGCATCACCCATGCAATGTTCGCGCCAGATTCAGATGTAGTTGAG
G-GGCTGGTGGCCAGAGTGATGAAGTTCAGAGAGATGGAAATCTCCGACAACAAGACTACTGATTTTCCATGGACTTCCT
GATTAGTTATGTAACTAATCAAGATAGTGGATCTAATTATTATGAAATTTACCCGCAGATGATGATTTCCACGTTGCAAT
CTTGTCATGTATTTGGACAGAATCTCAGTCTAGTAATGT-TCTATACTCAATGATGTAAATACCATGTGATGTAGCTGAT
TAATATCTGT--------AGGAAACTAGGAATTATATAAAGATCAGAATCGCG---------------------------
ACGCATAGATTGGGACCATAGCCTTCTATCTGTTTAGCTTACAGGTTCGTTGTTTAGCCTGAACCCT-GTCATGATAATA
ATA------ATGATCCTGGACGCTATGCATTATCTCTCTATGGTGTTGTTTCTATCTCATTAGTGTCGCACAAGCACAAC
CAAATTTTGCAACCTTATGTAAGCTGTGACATGAGATTTTTGTCAAGCGACACCAAGCCAGTCTCTTTGGTTCAGCATCA
CCAAGGTTGGCATCCTCTGGACTGTATGTATTGTAGCATTGCTTTTCCTTTTGCTTTACTCAGTGGAATTCTATACCGTT
CTTTTAGTATTGTTATC-TTTTGCTCCTTGCAGTTGA--GGAGGTCCCTTTCTTTTCCCTGCCTTCTTTTGAAAGTGAAG
CTTATTTTTT-ATATACATGAATCAAACTTTCAGCGAATCTGAATCTATTGAACATTTATTTTTTAATTGTGTCGTTGCG
ATAGAACTATGGAGAGTGATTTTTGATATATCCAATAAGCGCGCTGGAATGTCCATTGATGACATGCTAGCCTGGTGGTT
GAATAACAAAAATCACCCAGCGGACTGTTTGCTACATTCTGCTGTTCTTTGGACTCTGTGGAAATATCGTAATGACATAT
GTTTCAATCATGTCCCCTGGCTTGGGATGCAGGTTCTGTGGAGGAAAACTGCTTATACACTAGGCAGTTGGATGGTTCGA
TGCTCTGGCCCTGTCAAAGAAAGGGTGATGCACTTGGTAAGAAAGCTGGAGCAGGAAGCGCGAGCNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCTTGGCCCACTCCTTCGTCGCGGCTCCCG
TTTCCCTTTCTTTGCTGGTTGGTAGTACCTCTGAGACTAGCTTTTTTCTCTTTTAGTAGTTAAGTTTTTGGCGTTCTGCC
TGTTGAGGCTTGGACAACTCTATTTGCTGGGGCAGCGTGTGTGCTGTATATCCCCCCCGCGTGCTTATAACAGAGATGCT
GGTTGTTCTAGGGTTTCATTTGGTAATACAAATGGAGCCGGGGCAAGAGCCCTTTTCCTCTAAAAAAAATTCATATAGGT
ATATACCTTTGATGCCACTTACAGATTTGTGCAAGGATTATCCTACCAATCAACTAGCTACTCGTGCATAGGATTCTGAG
CACTCGGCAGCGAGGTGAACAGGTTGAGCTTACCGAGGTCTGAAGAATAATCCAGAGGGAACGAATGGCTACTCAACTGC
GCCCTGAATTCACACCAGTGGCATTGTAAGCAGCATAACTTCTATCTGACTAGATTTGCAAAAATG-TTGTGAAATCTGA
TGTCATATACCCTGATAATAGGGAGCATTACATGGTCACAGCAGTAGCAGAGATGGTTCAGTCAGACCTGACACCCTCTA
GGCATTGTTGGTCTTTCTGTGAGCAGGAGAGTTATTCATGTCTGGC
>chr3B_667
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-------------------------------------------AGCACCATATACAATGCACGCATTACTGCAGAC--TT
GCCAAGTGACCAAGTCTGAAGCATTTTCAGCATCAGCGTGACAATTTATCTAGATTTGCAGTGTAGTTTAGCCTGGAGAT
GAAACAAATGGCT---TGGGGGCATCGTTAGAATCT-GAAAGCTTCATATTAACACCTTCACCCTTTTGCCACAATTCAG
AGATTG-------------TTACTTTGGCCACAATCCGAAGCAAGTTCTGTAGTGAACTCCAAGAAATCTGATACAGGTT
GCACAAATTTGGCTTTGGTTGCACTCCTTTCTCATCACTTTATTTAA------------------ATCCATGGTTTTCTA
CT-TCA-TCTCTACGTCCAGGAGATAAAGCTCTTCACTGTCCTGTTTTACTACGTCCTCCTC------CTTGGCCTCTAT
ACACTACCAAGCCTGTCAGACGGTCCACCTCTTCAAAATGTGTGCCCAATGGTGCCT-AGGGTGAAAGGAAGCTGTTCAT
GAACGGTTTCCTCTACAAGCACCCTAGCACCATACTAGCTTCTGATTTGAAGACTTTGCTTCTCAACCATGCC-------
-----------GTCCGGTCATCGGCGAAC---------------ATCGTCACCGCTGCTGAGTTCCCTGGCCTCAACACC
CTTGGCATGTCGATGGCACGGACCGACATCGATCCCTATGATGTAGTGCTTCCCCAC--------TCTCACCCAAGGGCG
TCCGAGATGATGTTTGTCCCCAGTGGCAGCGTGCTGGCCGCTTTCTTTGACACCACCGGTAAGCTGTTTCAGAAGAGATT
ACGTGAGGGGGATGTTTTCATCTTTCCCCGTGGTCTGGTTCACTTTATCATGAACTATGGTCTCCGTCTTGCGACGATGT
TCTCGGTGCTCAGCAGTCAGAACCCTAGTGTGGTTGGAATCACCCACGCGATGTTTGCGCCAGATTCAGATGTAGTTGA-
G-GGCTGGTGGCCAGAATGATGAAGTTCAGAGAGATGGAAATTCCTGACAACAAGACTACTGATTTTCGATGGACTTCCT
GATAAGTTATGTAACGAGTCAAACTAGTGTATCCAATTATTATGAAATTTATCCATAGATGATGATTTTCATGTTTCAAT
CTGGTTATGTATATGGACAAAATTTCAGTCTACTGATGT-TTTATACTCCGTAATGTATATACCATG-------------
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>chr3D_700
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---------CCAAGTCTGAAGCATTTTCAGCATCAGCGTGACAATTTATCTAGATTTGCAGCGTAGGGTAGCCTGGAGAT
GAACCAAATGGCT---TAGGGGCGTCGCTAGAATCG-GAAAGCTTCATATTAACACCTTCACCCTTTTGCCACAGTTCAG
AGATTG-------------TTACTTTGGCCACAATCCGAAGCAAGTTCTGTAGCGAACTCCAAGAAATCTGATACAGGCT
GCACAGATTTGGCTTTGGTTGCACTCCTTTCTCATCACTTTATTTAA------------------ACCCATGAATTTTTA
CTCCC-ATCTCCGCGTCCAGGAGATGAAGCTCTTCACTGTCCTGTTTTCCTACGTCCTCCTC------CTTGGCCTCTAT
ACACCACCAAGCCTGTCAGACAGTCCACCTCTTCAAGATGTGTGCCCCATGGCGCCTCGGGGTGGAAGGAAGCTGTTCAT
GAACGGTTACATCTGCAAGCACCCTAGCACTATACTGGCTTCTGATTTCAAGACACTGCTTCTCAACCATGCTGGGAAAC
TAGACAACATGGTCCGGTCATCTGCGAAC---------------ATCATCACCGCTGCTGAGTTCCCTGGCCTCAACACC
CTTGGCATGTCGATGGCACGCACCGACATCGACTCCTACGGGATAGTGCTTCCCCAC--------TCTCACCCAAGGGCG
TCGGAGATGATGTTTGTCCATGATGGCAGCGTGCTGGCCGGTTTCTTTGACACCACCGGTAAGCTGTTTCAGAAGAGACT
GTGTGAGGGGGATGTGTTCATATTTCCCCGTGGTTTGGTTCACTTCATCATGAACTATGGTCTCCGCCTTGCGACGACGT
TCTCGGTGCTCAACAGTCAGAACCCTGGCGTGGTTGGAATCACCCACGCGATGTTTGCGCCAGATTCAGATGTAGTTGA-
GGGGCTGGTGGCCAGAATGATGAAGTTCAGAGAGATGGAAATCCCTGACAACAAGACTACTGATTTTCCATGGACTTACT
-------------------------AGTGAAACCAATTATAGTATAATTTATCGACGGATGATGATTTTCACATTTCAAT
CAAGACATGTATATGGGCAGAATTTCATTTTAGTGATGT-TCTATACTCTATACTCTA----------------GCCGAT
TAATTTCTGT--------TGGAAT----------TATAAAGAGCAGTATCGCG---------------------------
ACACACATATTGGGAGCAGAACTTTCTATCTGTTTACCCTACATGTGGCTTGTTTAGCC-------------------TA
ATG------ATAATCCTGGACGCTATGCGTTATCTCTCCGTGGTGTTGTTTCTATCTCAGCAGTGTTGCACAAGCACACC
CAAGTTTTGCAACCTTATTGCAGCTTTGACAC-AGATTTTCGTCAAGCAGCAGCCAGCCAGTCTCTTTGATTTAGCATCA
CCAAGGTTTGCGTCCTTTGGACTGTATGTATTGTAGCCTTGCTTTTCCTTTTGCTTTACTCAGCGGAACTCCATGCCATT
TTA-TAGTATTGTTATCTTTTTGCTCGTTGCAGTTGATCGGAGGTCCCTTTCTTTTCCCTGCCTTCTTTTGAATGTGAAG
CTTACTTTTT-GTTCTCTCTTTATGGAAAGTTTG----------------------------------------------
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--------------------------------------------------------------------ATTC--GTAGGA
ATATGCCTATGATGCCACTTACGGATTTGTGCAAGGACTATCCTACCAATCAACTAACTACTCGTGCATAGGATTCCGAG
C-------------------------------------------------------------------------------
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----------------------------------------------
>chr3A_701
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----------CAAGTCTGAAGCATTTTCAGCATCAGCGTGACAGTTTATCTAGATTTGCAGCGTAGGGTAGCCTGGAGAT
GAAACAAATGGCT---TAGGGGCATCGTTAGAATCG-GAAAGCTTCATATTAACACCTTCACCCTTTTGCCACAATTCAG
AGATTG-------------TTACTTTGGCCACAATCCGAAGCAAATTCTGTAGTGAACTCCAAGAAATCTGATACAGGTT
GCACAGATTTGGCTTTGGTTGCACTCCTTTCTCATCACTTTATTTAA------------------ACCCATGATTTTCTA
CT-CCCATCTCCGCGTCCAGGAGATGAAGCTCTTCACTGTCCTGTTTTCCTACGTCCTCCTT------CTTGGCCTCTAT
ACACCACCAAGCCTGTCAGATGGTCCACCTCTTCAAGATGTGTGCCCTATGGCACCTCAGGGTGAAAGGAAGCTGTTCAT
GAACGGTTTCCTCTGCAAGCACCCTAGCACCATACTGGCTTCTGATTTCAAGACACTGCTTCTCAATCATGCCGGGAAAC
TAGATAACATTCTCCGGTCATCGGTATAC---------------ATCGTCACCACCGCAGAGTTCCCTGGCCTCAACACC
CTTGGCATGTCGATGGCACGGACCGACATCGACCCCTATGGGTTAGTGCTTCCCCAC--------TCTCACCCAAGGGCG
TCCGAGATGATGTTTGTCCATGATGGCAGCGTGCTGGCCGGTTTCTTTGACACAACTGGTAAGCTGTTTCAGAAGAGACT
GTGTGAGGGGGATGTGTTCATCTTTCCCCGTGGTTTGGTTCACTTCATCATGAACTATGGTCTCCGTCTTGCGACGACGT
TCTCAGTGCTCAACAGTCAGAACCCTGGTGTGGTTGGCATCACCCATGCAATGTTTGCGCCAGATTCAGATGTAGTCGAG
G-GGCTGATGGCCAGAATGATGAAGTCCAGAGAGATGGAAATCCCTAACAACAAGACTACCGATTTTCCATGGACTTACT
-------------------------AGTGAAACCAATTATAGTATAATTTATCGACGCATGATGATTTTCACATTTCAAT
CAAGTCATGTATATGGGCAGAATTTCAATTTAGTGATGT-TCTATACTCTATACTCTA----------------GCCGAT
TAATTTCTGT--------AGGAAT----------TATAAAGAGCAGTATCGCG---------------------------
ACACACATATTGGGAGCAGAACTTTCTATCTGTTTACCCTACATGTGGCTTGTTTAGCC-------------------TA
ATG------ATAATCCTGGACGCTATGCGTTATCTCTCCATGGTGTTGTTTCTATCTCAGTAGTGTTGCACAAGCACACC
CAAGTTTTGCAACCTTATTGCAGCTTTGACAC-AGATTTTCGTCAAGCAGCAGCCAGCCAGTCTCTTTGATTTAGCATCA
CCAAGGTTGGCGTCCTTTGGACTGTAAGTATTGTAGCCTTGCTTTTCCTTTTGCTTTACTCAGCGGAACTCCATGCCATT
TTCTGAGTATTGTTCTCTTTTTGCTCCTTGCAGTTGA--GGAGGTCCCTTTCTTTTCCCTCCCTTCTTTTGAAAGTGAAG
CTTACTTTTT-GTTCTCTCTTTATGGAAAGTTTG----------------------------------------------
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--------------------------------------------------------------------ATTC--ATAGGA
ATATGCCTATGATGCCACTTACCGTTTTGTGCAAGGACTATCCTACCAATCAACTAACTACTCGTGCATAGGATTCCGAG
CACTCGGCAGCGAGGGAAT-------------------------------------------GAATGGTTACTCGACTGC
ACCTTGAATTCACCCCAGTGGCATGCTAAGCAGCACAACTTCTATTTGACTAGATTTGCAAAAATGTTTATGAAATTTGA
TGTCATATACCCTGATAATAGGGAGCACTACATTGTCACAACAGTAGCAGAGATAGTTCAGTCAGACTCGGCACCCTCTA
GGCATGGTTGGTCTTTC-----------------------------
>chr3A_804
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---------------------------------TCT-GAAAACTTCATATTAACAGGTTCACCCTTTTGCCACAATTCAG
AGATGTTCTCTGTAAGCGCTTACTTTGGCCCCAATCCAAAGCAAATTCTCAAGTGAACTCCAAGAAATGTGATACAGGTT
ACACAGATTTGCCTTTGGCTGCACTCCTTTCTCATCTCATTATTTAGGAGTACTCCATTATTTAGACCCATGATTTTCTA
CT-CC-ATCTCCGTGTCCAAGAGATGAAGCTCTTCAATGTCCTGTTTTCCTACGTTCTCCTCCTTGTCCTTGTCCTCTAT
ACACCAGCAAGCCTATCAGATAGTCCACCTCTTCAAGATGTGTGCCCTATGGCACCTCAGAGTGAAAGGAAGCTGTTCAT
GAACGGTCTGCAAGAACCCGAT-CGAGCACCATACAGGCTTATGATTTCAAGACACTGCTTCTCAACCATGCTGGGAAAC
TAGACAACATGGTCCGGTCATTGGCGAAC---------------ATCGTCACTGCTGCTGAGTTCCCTGGCCTCAATACC
CTTGGCATGTCGATAGCATGGACCGACATCAACCCCTACTGGTTAGTGCTTCCCCACTCTCACGGTCTCACCCAAGGGCA
TCCGAGATGATGTTTGTCCACGATGGCAGTGTGCTGGCCGGTTTCTTGGACTCAACAGGTAAGCTGTTTCAGAAGAGACT
CTGTGAGGGGGATGTGTTCATCTTTCCCCGTGGTTTGGTTCACTTCATCATGAACTATGGTCTCCGTCTTGCGACAACGT
TCTCGATGCTCAACAGTCAGAACCCTGGTGTGGTTGGCATCACCCATGCGATGTTTTCATCAGATTTTGATGTAGTTGAG
G-GGCTGATGGGTAGAATGATGAAGTTCAGAGAGATGGAAATCCCTGGCAACAACACTGCTGATTTTCCATGGACTTACT
-------------------------AGTGGATCCAATTATTATGAAGTTGATCCATGGAT-ATGATTTTCACGTTTCAAT
TTGGTTATGTATATGGACATGATTTCAGTCTAGTGATGTGTCTATACTCTATGCTGTATATACCATGTGATGTAGCTGAT
TAATTTCTGT--------AGGAAT----------TATAAAGATCAGTATCGCGGCACACAGATTTTTTTGGAAATTTTTG
ACACCCAGATTGGGAGCAGAACCTTCTATCTGTTTACCTTACAGGTGGCTTGTTAAGCCTGGACCCTTGTTGTGATGATA
ATAGTAACAATAATCCTGGACGCTATGCATTATCTCTCTATGGTGTTGTTTCTTTGTCGTTAGTGTTGCACAAGAACAAC
AAAGTTTTTCAGCCTTATTTCAGCTGTGACATGAGATTTCCGTCAAGCGACAGCCCACCAATCTCTTTGATTCGGCATCA
CCAAGGTTGGCGTCCTTCGTACTGTATGTGTCGTAGCCTTGCTTTTCCTTTTGCTTTACTCACTGGAACTCCATGCTGTT
TTTCTAGTGTTGTTGTC-TTTTGCTCCTTGCAGTTGA--GGAGGTCCCTTTCTTTCCCATGCCTTCT-------------
--------------------------------------------------------------------------------
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>chrUn_859
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----------------------CTTTGGCCACAATCCAAAGCAAATTCTGAAGTGAACTCCAAGAAATCTGATACAGGTT
ACATGGATTTGGCTTTGGGTGCACTCATTTCTCAGCGCATTATTTAA------------------GCCCGTGTTTTTCTC
C--------------------------------------TCCTGTTTTCCTACGTTCTCTTC------CTTGGGCTCTAT
ACACCAGCTAGCCTATCAGACAGTCCACCTCTTCAAGATGTGTGCCCTATGGCACCTCAGAGTGAAGGGAACCTATTCAT
GAATGGTTTCCTCTGCAAACACCCTAGCACCATACTGGCTTCCGATTTCAAGACATCGCTTCTCAACCATGCCGGGAAAC
TAAACAACATGGTCCGGTCATCGACAAAT---------------ATTATCACGGCTGCCGAGTT--------------CC
CTTGGCATGTCGATGGCACGGACCGACACCGGCCCCTACGGGGTAGTGCTTCCCCAC--------TCTCACCCAAGGGCG
TCAGAGATGATGTTTGTCCACGGTGGCAACGTGTTGGTCGGTTTCTTCGACACAACTGGTAAGCTGTTTCAGAAGAGACT
ATGTGAGGGGGATGTGTTCATCTTTCCCCGTGGTCTGGTTCACTTCATCATGAACTATGGTTTCCATCTTGCGACAACGT
TCTCCGTGCTCAGCAGTCAGAACCCTGGTGTGGCTGGCATCACCCATGCAATGTTTGCGCCAGATTCAGATGTAGTTGAG
G-AGCTGATGGCCAGAATGATGAAGTTCGGAGAGATGGAAATCCCTGACAACAAGACTACTGATTTTCCATGGACTTGCT
GACTA---------------------------------------------------------------------------
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>chr3B_1014
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------------------------------------CTGTCCTGTTTTACTACGTCCTCCTC------CTTGGCCTCTAT
ACACTACCAAGCCTGTCAGACGGTCCACCTCTTCAAAATGTGTGCCCAATGGTGCCT-AGGGTGAAAGGAAGCTGTTCAT
GAACGGTTTCCTCTACAAGCACCCTAGCACCATACTAGCTTCTGATTTGAAGACTTTGCTTCTCAACCATGCC-------
-----------GTCCGGTCATCGGCGAAC---------------ATCGTCACCGCTGCTGAGTTCCCTGGCCTCAACACC
CTTGGCATGTCGATGGCACGGACCGACATCGATCCCTATGATGTAGTGCTTCCCCAC--------TCTCACCCAAGGGCG
TCCGAGATGATGTTTTTCCCTAGTGGCAGCGTGCTGGCCACTTTCTTTGACACCACTGGTAAGCTGTTTCAGAAGAGATT
ATGTGAGGGGGATGTTTTCATCTTTCCCCGTGGTCTAGTTCACTTTATCATGAACTATGGTGTCCGTCTTGCGACGATGT
TCTCGGTGCTCAGCAGTCATAACCCTAGTGTGGTTGGAATCACCCACGCGATGTTTGCGCCAGATTCAGATGTAGTTGA-
G-GGCTGGTGGCCCGAATGATAAAGTTCAGAGAGATGGAAATTCCTGACAACAAGACTACTGATTTTTGATGGACTTCCT
GATAAGTTATGTAAGGAGTCAAACTAGTGTATCCAATTATTATGAAATTTATCCATAGATGATGATTTTCATGTTTCAAT
CTGGTTATGTATATGGACAAAATTTCAGTCTACTGATGT-TTTATACTC-------------------------------
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----------------------------------------------
>SNPs
SSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------
-------------------------------S------------------S------------S-S--SSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS----------S---S--------------S-----------------------S---------------S-
-------S--S------------S--S-SS--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------SS--S----------------------------S--S---------------
---------------------S--------------------------------------S-------------------
---S--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS------------------------S------------------------------------------
-----------------------------------------------------------------S--------------
---------------------S----S-----------------------------------------------------
---------------------------------S----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------S------------------
--------------------------------------------------------------------------------
-------------------------------------SS-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------S-----------------------------------S-------
---------------------------------------------------------------------------S----
------------S-------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------S----------------------------------------------------------------------
---------S----------------------------------------------------------------------
------------------------------------S----S------------------S-------------------
------------------------S-------------------------------------------------------
--------------------------------------------------------------------------------
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--------S-----------------------S-----------------------------------------------
------------S-------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------SS-------------
>forward_224
--------------------------------------------------------------------------------
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--------------------------------------------TGCCTTAACGCTGGGTACTG----------------
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>reverse_2597
--------------------------------------------------------------------------------
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------------------------------------TGGTGGTCCCTTTCTTTTCCC-----------------------
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----------------------------------------------
